RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NFKB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025225

Ensembl transcript IDs: ENSMUST00000073116.13, ENSMUST00000111881.4, ENSMUST00000236591.2, ENSMUST00000237330.2, ENSMUST00000237791.2

Found 373 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTaGTTCCCTTCTTTGGTGGGCCCTACCCTTTGTACAGCCTCCACC +
Preference number: 1 (lower is better)
Translates to: GIHFEAPSTGWGGTA*FPSLVGPTLCTAST
Trigger: GGTGGAGGCTGTACAAAGGGTAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR TCA 90 bp GGGCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTaGGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTC +
Preference number: 1 (lower is better)
Translates to: GLTSLFAETEEGHPL*GPIHRLGWHGLLPF
Trigger: GAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR CCA 90 bp CAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTaGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGCCCTACCCTT +
Preference number: 1 (lower is better)
Translates to: QRQRKGIHFEAPSTG*GGTACFPSLVGPTL
Trigger: AAGGGTAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR GCA 90 bp GACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACGAAGGAGACTaGCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACCAGGCTTC +
Preference number: 1 (lower is better)
Translates to: DPPSPHQPACNYEGD*RWETGSSCMCPPGF
Trigger: GAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
3UTR CCA 90 bp AGCTTGTCGCGGGTCTCAGGACCTTTCAGCAGCCTGACTCCCTCATaGAGACCCATGTCAGACAAGGCCTCCAATAGACCCACCAAGTCC +
Preference number: 1 (lower is better)
Translates to: SLSRVSGPFSSLTPS*RPMSDKASNRPTKS
Trigger: GGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
3UTR TCA 90 bp TGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTaGATTGCTGGCTGGGCCTCCTCCTCTATTCTCGCTCAGGGACTG +
Preference number: 1 (lower is better)
Translates to: WALPFVQPPPSLKLL*IAGWASSSILAQGL
Trigger: CAGTCCCTGAGCGAGAATAGAGGAGGAGGCCCAGCCAGCAATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR CCA 90 bp ACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGAATTGCTaGCTGGGCCTCCTCCTCTATTCTCGCTCAGGGACTGGGATGGGC +
Preference number: 1 (lower is better)
Translates to: TLCTASTLIKTALNC*LGLLLYSRSGTGMG
Trigger: GCCCATCCCAGTCCCTGAGCGAGAATAGAGGAGGAGGCCCAGCCAGCAATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR GCA 90 bp CCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGAATTaGTGGCTGGGCCTCCTCCTCTATTCTCGCTCAGGGACTGGGATG +
Preference number: 1 (lower is better)
Translates to: PTLCTASTLIKTALN*WLGLLLYSRSGTGM
Trigger: CATCCCAGTCCCTGAGCGAGAATAGAGGAGGAGGCCCAGCCAGCAATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR-3UTR TCA 90 bp GCTGAGCTGGTCCCCCTATTCCTCCCCAAGGGCTCACCTCTCTCTTTGCAGAGAGAAGGGCATCCACTTTaGGGCCCCATCCACAGGCTG +
Preference number: 2 (lower is better)
Translates to: AELVPLFLPKGSPLSLQREGHPL*GPIHRL
Trigger: CAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTC...TCTCTGCAAAGAGAGAGGTGAGCCCTTGGGGAGGAATAGGGGGACCAGCTCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR-3UTR CCA 90 bp AGCTGGTCCCCCTATTCCTCCCCAAGGGCTCACCTCTCTCTTTGCAGAGACAGATTCTCGCTCAGGGACTaGGATGGGCAGCACATTGGG +
Preference number: 2 (lower is better)
Translates to: SWSPYSSPRAHLSLCRDRFSLRD*DGQHIG
Trigger: CCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAA...TCTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGGGGAGGAATAGGGGGACCAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR-3UTR CCA 90 bp GAGCTGGTCCCCCTATTCCTCCCCAAGGGCTCACCTCTCTCTTTGCAGAGACAGACAGAGGGATCTGGGTaGAAGTTGACCGGGGCCATT +
Preference number: 2 (lower is better)
Translates to: ELVPLFLPKGSPLSLQRQTEGSG*KLTGAI
Trigger: AATGGCCCCGGTCAACTTCCACCCAGATCCCTCTGT...CTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGGGGAGGAATAGGGGGACCAGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR CCA 72 bp CCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTaGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCA +
Preference number: 3 (lower is better)
Translates to: PQAGVARPASLL*WALPFVQPPPS
Trigger: TGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR TCA 72 bp GACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTaGCCGGGGCCATTCAGTGCACCTGAGGCTGGGGGT +
Preference number: 3 (lower is better)
Translates to: DRDAVQRDLGGS*PGPFSAPEAGG
Trigger: ACCCCCAGCCTCAGGTGCACTGAATGGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR GCA 72 bp TTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTaGTTCCCTTCTTTGGTGGGCCCTACCCTTTGTACA +
Preference number: 3 (lower is better)
Translates to: FEAPSTGWGGTA*FPSLVGPTLCT
Trigger: TGTACAAAGGGTAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR CCA 72 bp CAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTaGGCCCTACCCTTTGTACAGCCTCCACCCTCATTA +
Preference number: 3 (lower is better)
Translates to: QAGVARPASLLW*ALPFVQPPPSL
Trigger: TAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR TCA 72 bp GCAGCTTGTCGCGGGTCTCAGGACCTTTCAGCAGCCTaGCTCCCTCATGGAGACCCATGTCAGACAAGGCCT +
Preference number: 3 (lower is better)
Translates to: AACRGSQDLSAA*LPHGDPCQTRP
Trigger: AGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
3UTR CCA 72 bp CACCAGCCAGCTTGTAACTACGAAGGAGACTGCCGCTaGGAGACGGGGTCTTCCTGTATGTGTCCACCAGGC +
Preference number: 3 (lower is better)
Translates to: HQPACNYEGDCR*ETGSSCMCPPG
Trigger: GCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAGCTGGCTGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
3UTR GCA 72 bp AGTCCCCACCAGCCAGCTTGTAACTACGAAGGAGACTaGCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCA +
Preference number: 3 (lower is better)
Translates to: SPHQPACNYEGD*RWETGSSCMCP
Trigger: TGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAGCTGGCTGGTGGGGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
3UTR CCA 72 bp TGGGCCTCCTCCTCTATTCTCGCTCAGGGACTGGGATaGGCAGCACATTGGGGTTGCTGTACCGTAAGTTGG +
Preference number: 3 (lower is better)
Translates to: WASSSILAQGLG*AAHWGCCTVSW
Trigger: CCAACTTACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAGGAGGAGGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
3UTR CCA 72 bp CGGGTCTCAGGACCTTTCAGCAGCCTGACTCCCTCATaGAGACCCATGTCAGACAAGGCCTCCAATAGACCC +
Preference number: 3 (lower is better)
Translates to: RVSGPFSSLTPS*RPMSDKASNRP
Trigger: GGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
3UTR TCA 72 bp TCGTGGGGGAGGCCTGATCAAGTTTCTGCTTTCTGCTaGGACCACCTCACCCTTACACCAGCAACACCCCTC +
Preference number: 3 (lower is better)
Translates to: SWGRPDQVSAFC*DHLTLTPATPL
Trigger: GAGGGGTGTTGCTGGTGTAAGGGTGAGGTGGTCTCAGCAGAAAGCAGAAACTTGATCAGGCCTCCCCCACGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR CCA 72 bp TCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTaGGGTTGCTGTACCGTAAGTTGGGGAGGGGTCTTC +
Preference number: 3 (lower is better)
Translates to: SILAQGLGWAAH*GCCTVSWGGVF
Trigger: GAAGACCCCTCCCCAACTTACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
3UTR CCA 72 bp ACAGCCTCCACCCTCATTAAAACTGCTCTGAATTGCTaGCTGGGCCTCCTCCTCTATTCTCGCTCAGGGACT +
Preference number: 3 (lower is better)
Translates to: TASTLIKTALNC*LGLLLYSRSGT
Trigger: AGTCCCTGAGCGAGAATAGAGGAGGAGGCCCAGCCAGCAATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR TCA 72 bp CCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTaGATTGCTGGCTGGGCCTCCTCCTCTATTCTCGCT +
Preference number: 3 (lower is better)
Translates to: PFVQPPPSLKLL*IAGWASSSILA
Trigger: AGCGAGAATAGAGGAGGAGGCCCAGCCAGCAATTCAGAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGCCCTACCCTTTGGCTCGGGCGCTGCGCTaGGCCAGACCGAACAGGCGC +
Preference number: 4 (lower is better)
Translates to: HRLGWHGLLPFFGGPYPLARALR*ARPNRR
Trigger: GCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGC...CAAAGGGTAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACCAGGCTTGCTCGGGCGCTGCGCTaGGCCAGACCGAACAGGCGC +
Preference number: 4 (lower is better)
Translates to: RRRLPLGDGVFLYVSTRLARALR*ARPNRR
Trigger: GCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGC...AAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR TCA 90 bp CGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACCAGGCTTCCCAGAGGTCGAGGGTaGGGGCAGCGGGCACAGAGG +
Preference number: 4 (lower is better)
Translates to: RRRLPLGDGVFLYVSTRLPRGRG*GQRAQR
Trigger: CCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGG...AAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp CACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGCCCTACCCTTTGCTAGAACCGGCCATCTaGGCTCCACCTCCCCCACCC +
Preference number: 4 (lower is better)
Translates to: HRLGWHGLLPFFGGPYPLLEPAI*APPPPP
Trigger: GGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAG...CAAAGGGTAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCGCTCGGGCGCTGCGCTaGGCCAGACCGAACAGGCGC +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAARALR*ARPNRR
Trigger: GCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGC...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGCCCTACCCTTTGCAGCAGCGTGGGGTCTaGACCCACCTGCAGCAGGAA +
Preference number: 4 (lower is better)
Translates to: HRLGWHGLLPFFGGPYPLQQRGV*THLQQE
Trigger: TTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTG...CAAAGGGTAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
3UTR CAA 72 bp TCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTaGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTC +
Preference number: 4 (lower is better)
Translates to: STGWGGTACFPS*VGPTLCTASTL
Trigger: GAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTCCCAGAGGTCGAGGGTaGGGGCAGCGGGCACAGAGG +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRPRGRG*GQRAQR
Trigger: CCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGG...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCATTCAGTGCACCTGAGGGCAACGCTCGGGCGCTaGGCTGCGCCAGACCGAACA +
Preference number: 4 (lower is better)
Translates to: LYRGIWVEVDRGHSVHLRATLGR*AAPDRT
Trigger: TGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGC...CCTCAGGTGCACTGAATGGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCGCGGGTCTCAGGACCTTTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCAGCAACGCTCGGGCGCTaGGCTGCGCCAGACCGAACA +
Preference number: 4 (lower is better)
Translates to: SRVSGPFSSLTPSWRPMSATLGR*AAPDRT
Trigger: TGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGC...TGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTCCGCCCCCGAAGGGCTaGGAGAAGGTGGGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRPPPKG*EKVGKA
Trigger: GGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGG...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAAGTTGGGCCCGGAGAGCCAAGTaGAGGGCGGAGTCTCCGTGC +
Preference number: 4 (lower is better)
Translates to: LAQGLGWAAHWGCCTVSWARRAK*RAESPC
Trigger: GCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGC...CCAACTTACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp TCGCGGGTCTCAGGACCTTTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCAGCCCGGAGAGCCAAGTaGAGGGCGGAGTCTCCGTGC +
Preference number: 4 (lower is better)
Translates to: SRVSGPFSSLTPSWRPMSARRAK*RAESPC
Trigger: GCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGC...TGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR TCA 90 bp CCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGCCCTACCTTGGTACTGCAAGTaGGGTCAAGAGGGGTATGGC +
Preference number: 4 (lower is better)
Translates to: PHPQAGVARPASLLWWALPWYCK*GQEGYG
Trigger: GCCATACCCCTCTTGACCTCACTTGCAGTACCAAGG...TAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAAGTTGGCTAGAACCGGCCATCTaGGCTCCACCTCCCCCACCC +
Preference number: 4 (lower is better)
Translates to: LAQGLGWAAHWGCCTVSWLEPAI*APPPPP
Trigger: GGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAG...CCAACTTACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCGCGGGTCTCAGGACCTTTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCACTAGAACCGGCCATCTaGGCTCCACCTCCCCCACCC +
Preference number: 4 (lower is better)
Translates to: SRVSGPFSSLTPSWRPMSLEPAI*APPPPP
Trigger: GGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAG...TGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCGCAACGCTCGGGCGCTaGGCTGCGCCAGACCGAACA +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAATLGR*AAPDRT
Trigger: TGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGC...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AGACCCATGTCAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCCAGAGCACGCGCGTCTaGGGTGACGCCGTAGTCCAG +
Preference number: 4 (lower is better)
Translates to: RPMSDKASNRPTKSPPASQSTRV*GDAVVQ
Trigger: CTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTG...GCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp CGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACCAGGCTTTCCGCTGCGCAACAGTaGCTGCAACAGCTCTGGGGC +
Preference number: 4 (lower is better)
Translates to: RRRLPLGDGVFLYVSTRLSAAQQ*LQQLWG
Trigger: GCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGA...AAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp AGACCCATGTCAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCCAGGTTCTGCAGGGCTaGATCCCCCAGGGACAGCCC +
Preference number: 4 (lower is better)
Translates to: RPMSDKASNRPTKSPPASQVLQG*IPQGQP
Trigger: GGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTG...GCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCCTGTCATGGATGGGCTaGGAGATCACAGGCTTCAGG +
Preference number: 4 (lower is better)
Translates to: RKGIHFEAPSTGWGGTACLSWMG*EITGFR
Trigger: CCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAG...GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTGCCCGGAGAGCCAAGTaGAGGGCGGAGTCTCCGTGC +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRARRAK*RAESPC
Trigger: GCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGC...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACCAGGCTTAGAAAAAGCCGAGGCTaGCACCTCCTCCAGCGCCTC +
Preference number: 4 (lower is better)
Translates to: RRRLPLGDGVFLYVSTRLRKSRG*HLLQRL
Trigger: GAGGCGCTGGAGGAGGTGGCAGCCTCGGCTTTTTCT...AAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCTAGAACCGGCCATCTaGGCTCCACCTCCCCCACCC +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGALEPAI*APPPPP
Trigger: GGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAG...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAGCTCGGGCGCTGCGCTaGGCCAGACCGAACAGGCGC +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKARALR*ARPNRR
Trigger: GCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGC...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCAGAGCACGCGCGTCTaGGGTGACGCCGTAGTCCAG +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAQSTRV*GDAVVQ
Trigger: CTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTG...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AGCTGGTCCCCCTATTCCTCCCCAAGGGCTCACCTCTCTCTTTGCAGAGACAGACAGAGCACGCGCGTCTaGGGTGACGCCGTAGTCCAG +
Preference number: 4 (lower is better)
Translates to: SWSPYSSPRAHLSLCRDRQSTRV*GDAVVQ
Trigger: CTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTG...TCTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGGGGAGGAATAGGGGGACCAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAAGTTGGCAGCAGCGTGGGGTCTaGACCCACCTGCAGCAGGAA +
Preference number: 4 (lower is better)
Translates to: LAQGLGWAAHWGCCTVSWQQRGV*THLQQE
Trigger: TTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTG...CCAACTTACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAAGTTGGTCCGCTGCGCAACAGTaGCTGCAACAGCTCTGGGGC +
Preference number: 4 (lower is better)
Translates to: LAQGLGWAAHWGCCTVSWSAAQQ*LQQLWG
Trigger: GCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGA...CCAACTTACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAGGACAGCCCTGGCCCTaGAGGGCTGGGTGGGGCCAG +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKGQPWP*RAGWGQ
Trigger: CTGGCCCCACCCAGCCCTGCAGGGCCAGGGCTGTCC...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGGACAGCCCTGGCCCTaGAGGGCTGGGTGGGGCCAG +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGGQPWP*RAGWGQ
Trigger: CTGGCCCCACCCAGCCCTGCAGGGCCAGGGCTGTCC...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCAGGTTCTGCAGGGCTaGATCCCCCAGGGACAGCCC +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAQVLQG*IPQGQP
Trigger: GGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTG...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGCCCTACCCTTTGCTTTCTTCAGCTCCTTaGCCTCCTGCTCTAGCTCCC +
Preference number: 4 (lower is better)
Translates to: HRLGWHGLLPFFGGPYPLLSSAP*PPALAP
Trigger: GGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAG...CAAAGGGTAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGCCCTACACTTGCTGTCATGGATaGGCTGGGAGATCACAGGCT +
Preference number: 4 (lower is better)
Translates to: PIHRLGWHGLLPFFGGPYTCCHG*AGRSQA
Trigger: AGCCTGTGATCTCCCAGCCCATCCATGACAGCAAGT...GTAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGCCCTACGGAGACTTGCTGTCATaGATGGGCTGGGAGATCACA +
Preference number: 4 (lower is better)
Translates to: PIHRLGWHGLLPFFGGPYGDLLS*MGWEIT
Trigger: TGTGATCTCCCAGCCCATCCATGACAGCAAGTCTCC...GTAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp TTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCAGACAAGGCCTCCAATAGACCGCCCCCGAAGGGCTaGGAGAAGGTGGGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: FSSLTPSWRPMSDKASNRPPPKG*EKVGKA
Trigger: GGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGG...TCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCGAACCTCCACCCATGTaGGATCCGCCCCCGAAGGGC +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAEPPPM*DPPPKG
Trigger: GCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTC...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTGAACCTCCACCCATGTaGGATCCGCCCCCGAAGGGC +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYREPPPM*DPPPKG
Trigger: GCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTC...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCGCCGATCCAGCAGCGTaGGGTCTGCACCCACCTGCA +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAADPAA*GLHPPA
Trigger: TGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGC...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GTAACTACGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACGCCGATCCAGCAGCGTaGGGTCTGCACCCACCTGCA +
Preference number: 4 (lower is better)
Translates to: VTTKETAAGRRGLPVCVHADPAA*GLHPPA
Trigger: TGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGC...GTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
3UTR CAA 72 bp CTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTaGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCT +
Preference number: 4 (lower is better)
Translates to: LSLCRDRGRAST*RPHPQAGVARP
Trigger: AGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGCCCAGAGGTCGAGGGTaGGGGCAGCGGGCACAGAGG +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGPRGRG*GQRAQR
Trigger: CCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGG...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAACCCAGAGGTCGAGGGTaGGGGCAGCGGGCACAGAGG +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKPRGRG*GQRAQR
Trigger: CCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGG...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GTAACTACGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACAGCTCCTTGGCCTCCTaGTCTAGCTCCCGCCGCTCA +
Preference number: 4 (lower is better)
Translates to: VTTKETAAGRRGLPVCVHSSLAS*SSSRRS
Trigger: TGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCT...GTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp CTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAAGTTGGAGAAAAAGCCGAGGCTaGCACCTCCTCCAGCGCCTC +
Preference number: 4 (lower is better)
Translates to: LAQGLGWAAHWGCCTVSWRKSRG*HLLQRL
Trigger: GAGGCGCTGGAGGAGGTGGCAGCCTCGGCTTTTTCT...CCAACTTACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCGCGGGTCTCAGGACCTTTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCAGCAGCCCATTGGGGCTaGACCGGATTGGTAGGGGTT +
Preference number: 4 (lower is better)
Translates to: SRVSGPFSSLTPSWRPMSAAHWG*TGLVGV
Trigger: AACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGC...TGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp GAGCTGGTCCCCCTATTCCTCCCCAAGGGCTCACCTCTCTCTTTGCAGAGACAGTCCGTTCTCGTCCTGTaGCATCAGCAGGTGGCGCTG +
Preference number: 4 (lower is better)
Translates to: ELVPLFLPKGSPLSLQRQSVLVL*HQQVAL
Trigger: CAGCGCCACCTGCTGATGGCACAGGACGAGAACGGA...CTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGGGGAGGAATAGGGGGACCAGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCTCCGCTGCGCAACAGTaGCTGCAACAGCTCTGGGGC +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGASAAQQ*LQQLWG
Trigger: GCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGA...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATGCAGTTCGGCCCCCTTaGCTCTCTGGGGCCTCCACT +
Preference number: 4 (lower is better)
Translates to: AHLSLCRDRGRASTLRPHAVRPP*LSGAST
Trigger: AGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGC...ATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACCAGGCTTGGACCATCCAGCAGTTaGTCCAGGTTCTGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: RRRLPLGDGVFLYVSTRLGPSSS*SRFCRA
Trigger: AGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCC...AAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp CTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAAGTTGGCCTGGCAAACCTCCATaGGAGGGGCCTTCACAGCCA +
Preference number: 4 (lower is better)
Translates to: LAQGLGWAAHWGCCTVSWPGKPP*EGPSQP
Trigger: TGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGG...CCAACTTACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTTTGCCCACCAGACTGTaGGCATGCGCACGAGGTGGG +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRLPTRL*ACARGG
Trigger: CCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAA...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GTAACTACGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACTTGCCCACCAGACTGTaGGCATGCGCACGAGGTGGG +
Preference number: 4 (lower is better)
Translates to: VTTKETAAGRRGLPVCVHLPTRL*ACARGG
Trigger: CCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAA...GTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp TCGCGGGTCTCAGGACCTTTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCAAGGGCTGGGAGAAGGTaGGCAAGGCCTTTCTCCGCT +
Preference number: 4 (lower is better)
Translates to: SRVSGPFSSLTPSWRPMSRAGRR*ARPFSA
Trigger: AGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCT...TGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAACCGCCCCCGAAGGGCTaGGAGAAGGTGGGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKPPPKG*EKVGKA
Trigger: GGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGG...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACGAACCTCCACCCATGTaGGATCCGCCCCCGAAGGGC +
Preference number: 4 (lower is better)
Translates to: QTRPPIDPPSPHQPACNYEPPPM*DPPPKG
Trigger: GCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTC...GTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp TCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGCCGATCCAGCAGCGTaGGGTCTGCACCCACCTGCA +
Preference number: 4 (lower is better)
Translates to: SLCRDRGRASTLRPHPQAADPAA*GLHPPA
Trigger: TGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGC...AGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GTAACTACGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACCCCCAGGGACAGCCCTaGCCCTTGGTACTGCAAGTG +
Preference number: 4 (lower is better)
Translates to: VTTKETAAGRRGLPVCVHPQGQP*PLVLQV
Trigger: CACTTGCAGTACCAAGGGCCAGGGCTGTCCCTGGGG...GTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR TCA 90 bp CGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACCAGGCTTCCTTGGTACTGCAAGTaGGGTCAAGAGGGGTATGGC +
Preference number: 4 (lower is better)
Translates to: RRRLPLGDGVFLYVSTRLPWYCK*GQEGYG
Trigger: GCCATACCCCTCTTGACCTCACTTGCAGTACCAAGG...AAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp CGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACCAGGCTTCCCAACTCTGAACACTaGTTGCCCACCAGACTGTGG +
Preference number: 4 (lower is better)
Translates to: RRRLPLGDGVFLYVSTRLPNSEH*LPTRLW
Trigger: CCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGG...AAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCAGGCCCCTGGAGACTTaGTGTCATGGATGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGARPLET*CHGWAG
Trigger: CCCAGCCCATCCATGACAGCAAGTCTCCAGGGGCCT...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAGGCCCCTGGAGACTTaGTGTCATGGATGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRRPLET*CHGWAG
Trigger: CCCAGCCCATCCATGACAGCAAGTCTCCAGGGGCCT...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AGCTGGTCCCCCTATTCCTCCCCAAGGGCTCACCTCTCTCTTTGCAGAGACAGAAGGCCCCTGGAGACTTaGTGTCATGGATGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: SWSPYSSPRAHLSLCRDRRPLET*CHGWAG
Trigger: CCCAGCCCATCCATGACAGCAAGTCTCCAGGGGCCT...TCTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGGGGAGGAATAGGGGGACCAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GTAACTACGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACAGGCCCCTGGAGACTTaGTGTCATGGATGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: VTTKETAAGRRGLPVCVHRPLET*CHGWAG
Trigger: CCCAGCCCATCCATGACAGCAAGTCTCCAGGGGCCT...GTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCAGAAAAAGCCGAGGCTaGCACCTCCTCCAGCGCCTC +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGARKSRG*HLLQRL
Trigger: GAGGCGCTGGAGGAGGTGGCAGCCTCGGCTTTTTCT...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCGCAGCCCATTGGGGCTaGACCGGATTGGTAGGGGTT +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAAAHWG*TGLVGV
Trigger: AACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGC...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTGCAGCCCATTGGGGCTaGACCGGATTGGTAGGGGTT +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRAAHWG*TGLVGV
Trigger: AACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGC...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCAACGCTCGGGCGCTaGGCTGCGCCAGACCGAACA +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGATLGR*AAPDRT
Trigger: TGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGC...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTTCCGTTCTCGTCCTGTaGCATCAGCAGGTGGCGCTG +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRSVLVL*HQQVAL
Trigger: CAGCGCCACCTGCTGATGGCACAGGACGAGAACGGA...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCGTGATTACCGCCAGGTaGAGAGGCGTCTGGTGCAGG +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAVITAR*RGVWCR
Trigger: CCTGCACCAGACGCCTCTGCACCTGGCGGTAATCAC...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAAGTTGGCTCACCACCCTTGTCTaGCCAGTGATTACCGCCAGG +
Preference number: 4 (lower is better)
Translates to: LAQGLGWAAHWGCCTVSWLTTLV*PVITAR
Trigger: CCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAG...CCAACTTACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCGCGGGTCTCAGGACCTTTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCACTCACCACCCTTGTCTaGCCAGTGATTACCGCCAGG +
Preference number: 4 (lower is better)
Translates to: SRVSGPFSSLTPSWRPMSLTTLV*PVITAR
Trigger: CCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAG...TGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp TTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCAGACAAGGCCTCCAATAGAGCAGTTCGGCCCCCTTaGCTCTCTGGGGCCTCCACT +
Preference number: 4 (lower is better)
Translates to: FSSLTPSWRPMSDKASNRAVRPP*LSGAST
Trigger: AGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGC...TCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTGGCATGCGCACGAGGTaGGTCACTGTGTGTCACCAG +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRGMRTR*VTVCHQ
Trigger: CTGGTGACACACAGTGACCCACCTCGTGCGCATGCC...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATTTGCCCACCAGACTGTaGGCATGCGCACGAGGTGGG +
Preference number: 4 (lower is better)
Translates to: AHLSLCRDRGRASTLRPHLPTRL*ACARGG
Trigger: CCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAA...ATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACCAGGCTTCTGTCATGGATGGGCTaGGAGATCACAGGCTTCAGG +
Preference number: 4 (lower is better)
Translates to: RRRLPLGDGVFLYVSTRLLSWMG*EITGFR
Trigger: CCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAG...AAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCAGGGCTGGGAGAAGGTaGGCAAGGCCTTTCTCCGCT +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGARAGRR*ARPFSA
Trigger: AGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCT...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAGGGCTGGGAGAAGGTaGGCAAGGCCTTTCTCCGCT +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRRAGRR*ARPFSA
Trigger: AGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCT...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCTGTGCCATCAGCAGGTaGCGCTGTCCCGCTAGCAGA +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGACAISR*RCPASR
Trigger: TCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACA...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCAGGTGCAGAGGCGTCTaGTGCAGGTGGTTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGARCRGV*CRWLVR
Trigger: CCTCACCAACCACCTGCACCAGACGCCTCTGCACCT...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAGCCCGGAGAGCCAAGTaGAGGGCGGAGTCTCCGTGC +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKARRAK*RAESPC
Trigger: GCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGC...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCGGAGAGCCAAGTaGAGGGCGGAGTCTCCGTGC +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGARRAK*RAESPC
Trigger: GCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGC...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GTAACTACGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACGAGGCGAGTAAGAGTTaGGGACCCGAGTCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: VTTKETAAGRRGLPVCVHEASKS*GPESSC
Trigger: GCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTC...GTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp CTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAAGTTGGTGTCCTTACCTGTGCTaGGCAGCTTGTCGCGGGTCT +
Preference number: 4 (lower is better)
Translates to: LAQGLGWAAHWGCCTVSWCPYLC*AACRGS
Trigger: AGACCCGCGACAAGCTGCCCAGCACAGGTAAGGACA...CCAACTTACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATACCAGACTGTGGGCATaGGCACGAGGTGGGTCACTG +
Preference number: 4 (lower is better)
Translates to: AHLSLCRDRGRASTLRPHTRLWA*ARGGSL
Trigger: CAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGT...ATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACACCAGACTGTGGGCATaGGCACGAGGTGGGTCACTG +
Preference number: 4 (lower is better)
Translates to: QTRPPIDPPSPHQPACNYTRLWA*ARGGSL
Trigger: CAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGT...GTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGCAGAGCACGCGCGTCTaGGGTGACGCCGTAGTCCAG +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGQSTRV*GDAVVQ
Trigger: CTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTG...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGTGATTACCGCCAGGTaGAGAGGCGTCTGGTGCAGG +
Preference number: 4 (lower is better)
Translates to: SLCRDRGRASTLRPHPQAVITAR*RGVWCR
Trigger: CCTGCACCAGACGCCTCTGCACCTGGCGGTAATCAC...AGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACGTGATTACCGCCAGGTaGAGAGGCGTCTGGTGCAGG +
Preference number: 4 (lower is better)
Translates to: QTRPPIDPPSPHQPACNYVITAR*RGVWCR
Trigger: CCTGCACCAGACGCCTCTGCACCTGGCGGTAATCAC...GTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCTCACCACCCTTGTCTaGCCAGTGATTACCGCCAGG +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGALTTLV*PVITAR
Trigger: CCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAG...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTCTCACCACCCTTGTCTaGCCAGTGATTACCGCCAGG +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRLTTLV*PVITAR
Trigger: CCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAG...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCAGACAAGGCCTCCAATAGACAGCAGCGTGGGGTCTaGACCCACCTGCAGCAGGAA +
Preference number: 4 (lower is better)
Translates to: FSSLTPSWRPMSDKASNRQQRGV*THLQQE
Trigger: TTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTG...TCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAGCAGTTCGGCCCCCTTaGCTCTCTGGGGCCTCCACT +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKAVRPP*LSGAST
Trigger: AGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGC...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCAGTTCGGCCCCCTTaGCTCTCTGGGGCCTCCACT +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGAVRPP*LSGAST
Trigger: AGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGC...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGCAGGTTCTGCAGGGCTaGATCCCCCAGGGACAGCCC +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGQVLQG*IPQGQP
Trigger: GGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTG...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GAGCTGGTCCCCCTATTCCTCCCCAAGGGCTCACCTCTCTCTTTGCAGAGACAGAGCTGTCTCAGGGGCTaGATCCTTAGGCTCCACGAT +
Preference number: 4 (lower is better)
Translates to: ELVPLFLPKGSPLSLQRQSCLRG*ILRLHD
Trigger: ATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAGCT...CTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGGGGAGGAATAGGGGGACCAGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp TCGCGGGTCTCAGGACCTTTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCAAGCTGTCTCAGGGGCTaGATCCTTAGGCTCCACGAT +
Preference number: 4 (lower is better)
Translates to: SRVSGPFSSLTPSWRPMSSCLRG*ILRLHD
Trigger: ATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAGCT...TGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp CAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACCCTGGCAAACCTCCATaGGAGGGGCCTTCACAGCCA +
Preference number: 4 (lower is better)
Translates to: QTRPPIDPPSPHQPACNYPGKPP*EGPSQP
Trigger: TGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGG...GTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp TCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGCATGCGCACGAGGTaGGTCACTGTGTGTCACCAG +
Preference number: 4 (lower is better)
Translates to: SLCRDRGRASTLRPHPQAGMRTR*VTVCHQ
Trigger: CTGGTGACACACAGTGACCCACCTCGTGCGCATGCC...AGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACGGCATGCGCACGAGGTaGGTCACTGTGTGTCACCAG +
Preference number: 4 (lower is better)
Translates to: QTRPPIDPPSPHQPACNYGMRTR*VTVCHQ
Trigger: CTGGTGACACACAGTGACCCACCTCGTGCGCATGCC...GTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp GCTGAGCTGGTCCCCCTATTCCTCCCCAAGGGCTCACCTCTCTCTTTGCAGAGAGAGCAGTCATGTCCTTaGGTCCTACAGACACAGCGC +
Preference number: 4 (lower is better)
Translates to: AELVPLFLPKGSPLSLQREQSCP*VLQTQR
Trigger: GCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTC...TCTCTGCAAAGAGAGAGGTGAGCCCTTGGGGAGGAATAGGGGGACCAGCTCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp TCGCGGGTCTCAGGACCTTTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCAGAGCAGTCATGTCCTTaGGTCCTACAGACACAGCGC +
Preference number: 4 (lower is better)
Translates to: SRVSGPFSSLTPSWRPMSEQSCP*VLQTQR
Trigger: GCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTC...TGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAGAACCTCCACCCATGTaGGATCCGCCCCCGAAGGGC +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKEPPPM*DPPPKG
Trigger: GCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTC...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp AGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACGAAGGATGTGCCATCAGCAGGTaGCGCTGTCCCGCTAGCAGA +
Preference number: 4 (lower is better)
Translates to: RPPIDPPSPHQPACNYEGCAISR*RCPASR
Trigger: TCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACA...TCCTTCGTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp CAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACAGGTGCAGAGGCGTCTaGTGCAGGTGGTTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: QTRPPIDPPSPHQPACNYRCRGV*CRWLVR
Trigger: CCTCACCAACCACCTGCACCAGACGCCTCTGCACCT...GTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAGCCGATCCAGCAGCGTaGGGTCTGCACCCACCTGCA +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKADPAA*GLHPPA
Trigger: TGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGC...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCGATCCAGCAGCGTaGGGTCTGCACCCACCTGCA +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGADPAA*GLHPPA
Trigger: TGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGC...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCATTTGGGGCACAGCATaGGCTCCGCTGCGCAACAGT +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAIWGTA*APLRNS
Trigger: ACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAAT...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTATTTGGGGCACAGCATaGGCTCCGCTGCGCAACAGT +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRIWGTA*APLRNS
Trigger: ACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAAT...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATGAGGCGAGTAAGAGTTaGGGACCCGAGTCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: AHLSLCRDRGRASTLRPHEASKS*GPESSC
Trigger: GCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTC...ATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp AGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTGGCACGGCCTGCCCCAGATTATTAAATTaGGCAGTCATGTCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: RKGIHFEAPSTGWGGTACPRLLN*AVMSLG
Trigger: ACCCAAGGACATGACTGCTCAATTTAATAATCTGGG...GCAGGCCGTGCCACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTGGGCTATCTGCTCAATaGCACCAGTCTGCCCATGGA +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRGLSAQ*HQSAHG
Trigger: TCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCC...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCCTTGGTACTGCAAGTaGGGTCAAGAGGGGTATGGC +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAPWYCK*GQEGYG
Trigger: GCCATACCCCTCTTGACCTCACTTGCAGTACCAAGG...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCGCGGGTCTCAGGACCTTTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCACATCATATTCGGGGATaGCATCCAGGCCTGGATCGT +
Preference number: 4 (lower is better)
Translates to: SRVSGPFSSLTPSWRPMSHHIRG*HPGLDR
Trigger: ACGATCCAGGCCTGGATGGCATCCCCGAATATGATG...TGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTCCCAACTCTGAACACTaGTTGCCCACCAGACTGTGG +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRPNSEH*LPTRLW
Trigger: CCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGG...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGAGCTCCTTGGCCTCCTaGTCTAGCTCCCGCCGCTCA +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGSSLAS*SSSRRS
Trigger: TGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCT...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCGCTTGCGTTTCAGCTaGAGGAACACCGTTACAGGC +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGARLRFS*RNTVTG
Trigger: GCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCG...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTCGCTTGCGTTTCAGCTaGAGGAACACCGTTACAGGC +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRRLRFS*RNTVTG
Trigger: GCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCG...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GTAACTACGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACCGCTTGCGTTTCAGCTaGAGGAACACCGTTACAGGC +
Preference number: 4 (lower is better)
Translates to: VTTKETAAGRRGLPVCVHRLRFS*RNTVTG
Trigger: GCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCG...GTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGGCTCGGGCGCTGCGCTaGGCCAGACCGAACAGGCGC +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLARALR*ARPNRR
Trigger: GCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGC...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCAGACAAGGCCTCCAATAGATCCGTTCTCGTCCTGTaGCATCAGCAGGTGGCGCTG +
Preference number: 4 (lower is better)
Translates to: FSSLTPSWRPMSDKASNRSVLVL*HQQVAL
Trigger: CAGCGCCACCTGCTGATGGCACAGGACGAGAACGGA...TCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp GCTGAGCTGGTCCCCCTATTCCTCCCCAAGGGCTCACCTCTCTCTTTGCAGAGATCAATGACACCAGTCTaGCCATGGATGATGGCCAGG +
Preference number: 4 (lower is better)
Translates to: AELVPLFLPKGSPLSLQRSMTPV*PWMMAR
Trigger: CCTGGCCATCATCCATGGGCAGACTGGTGTCATTGA...TCTCTGCAAAGAGAGAGGTGAGCCCTTGGGGAGGAATAGGGGGACCAGCTCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAACAGCAGCGTGGGGTCTaGACCCACCTGCAGCAGGAA +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKQQRGV*THLQQE
Trigger: TTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTG...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGCAGCAGCGTGGGGTCTaGACCCACCTGCAGCAGGAA +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGQQRGV*THLQQE
Trigger: TTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTG...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGTCCGCTGCGCAACAGTaGCTGCAACAGCTCTGGGGC +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGSAAQQ*LQQLWG
Trigger: GCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGA...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGGGACAGCCCTGGCCCTaGAGGGCTGGGTGGGGCCAG +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLGQPWP*RAGWGQ
Trigger: CTGGCCCCACCCAGCCCTGCAGGGCCAGGGCTGTCC...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCAGCTGTCTCAGGGGCTaGATCCTTAGGCTCCACGAT +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGASCLRG*ILRLHD
Trigger: ATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAGCT...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGTTGCCCACCAGACTGTaGGCATGCGCACGAGGTGGG +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGLPTRL*ACARGG
Trigger: CCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAA...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCGAGCAGTCATGTCCTTaGGTCCTACAGACACAGCGC +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAEQSCP*VLQTQR
Trigger: GCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTC...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCTTTCTTCAGCTCCTTaGCCTCCTGCTCTAGCTCCC +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGALSSAP*PPALAP
Trigger: GGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAG...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACATTTGGGGCACAGCATaGGCTCCGCTGCGCAACAGT +
Preference number: 4 (lower is better)
Translates to: QTRPPIDPPSPHQPACNYIWGTA*APLRNS
Trigger: ACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAAT...GTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR TCA 90 bp GCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATGGGCTATCTGCTCAATaGCACCAGTCTGCCCATGGA +
Preference number: 4 (lower is better)
Translates to: AHLSLCRDRGRASTLRPHGLSAQ*HQSAHG
Trigger: TCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCC...ATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp AGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACGAAGGAGGGCTATCTGCTCAATaGCACCAGTCTGCCCATGGA +
Preference number: 4 (lower is better)
Translates to: RPPIDPPSPHQPACNYEGGLSAQ*HQSAHG
Trigger: TCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCC...TCCTTCGTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCATCATATTCGGGGATaGCATCCAGGCCTGGATCGT +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAHHIRG*HPGLDR
Trigger: ACGATCCAGGCCTGGATGGCATCCCCGAATATGATG...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGACCAGACTGTGGGCATaGGCACGAGGTGGGTCACTG +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGTRLWA*ARGGSL
Trigger: CAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGT...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTACTCTGAACACTGCTTaGCCACCAGACTGTGGGCAT +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRTLNTA*PPDCGH
Trigger: ATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGT...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GTAACTACGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACACTCTGAACACTGCTTaGCCACCAGACTGTGGGCAT +
Preference number: 4 (lower is better)
Translates to: VTTKETAAGRRGLPVCVHTLNTA*PPDCGH
Trigger: ATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGT...GTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAAGGCCCCTGGAGACTTaGTGTCATGGATGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKRPLET*CHGWAG
Trigger: CCCAGCCCATCCATGACAGCAAGTCTCCAGGGGCCT...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CTTCTTTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCAGAAAAAGCCGAGGCTaGCACCTCCTCCAGCGCCTC +
Preference number: 4 (lower is better)
Translates to: LLWWALPFVQPPPSLKLLRKSRG*HLLQRL
Trigger: GAGGCGCTGGAGGAGGTGGCAGCCTCGGCTTTTTCT...GAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAAAGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAATCCGTTCTCGTCCTGTaGCATCAGCAGGTGGCGCTG +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKSVLVL*HQQVAL
Trigger: CAGCGCCACCTGCTGATGGCACAGGACGAGAACGGA...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCTCAATGACACCAGTCTaGCCATGGATGATGGCCAGG +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGASMTPV*PWMMAR
Trigger: CCTGGCCATCATCCATGGGCAGACTGGTGTCATTGA...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAGTGATTACCGCCAGGTaGAGAGGCGTCTGGTGCAGG +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKVITAR*RGVWCR
Trigger: CCTGCACCAGACGCCTCTGCACCTGGCGGTAATCAC...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGTGATTACCGCCAGGTaGAGAGGCGTCTGGTGCAGG +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGVITAR*RGVWCR
Trigger: CCTGCACCAGACGCCTCTGCACCTGGCGGTAATCAC...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGCCCTACCCTTTGTCAAAATCAGGCATGTaGAATATTTGGGGCACAGCA +
Preference number: 4 (lower is better)
Translates to: HRLGWHGLLPFFGGPYPLSKSGM*NIWGTA
Trigger: TGCTGTGCCCCAAATATTGCACATGCCTGATTTTGA...CAAAGGGTAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAACCTGGCAAACCTCCATaGGAGGGGCCTTCACAGCCA +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKPGKPP*EGPSQP
Trigger: TGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGG...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGGCATGCGCACGAGGTaGGTCACTGTGTGTCACCAG +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGGMRTR*VTVCHQ
Trigger: CTGGTGACACACAGTGACCCACCTCGTGCGCATGCC...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp AGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACGAAGGACTTTCTTCAGCTCCTTaGCCTCCTGCTCTAGCTCCC +
Preference number: 4 (lower is better)
Translates to: RPPIDPPSPHQPACNYEGLSSAP*PPALAP
Trigger: GGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAG...TCCTTCGTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCACTTGCTGTCATGGATaGGCTGGGAGATCACAGGCT +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGATCCHG*AGRSQA
Trigger: AGCCTGTGATCTCCCAGCCCATCCATGACAGCAAGT...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCGGAGACTTGCTGTCATaGATGGGCTGGGAGATCACA +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAGDLLS*MGWEIT
Trigger: TGTGATCTCCCAGCCCATCCATGACAGCAAGTCTCC...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGAGGGCTGGGAGAAGGTaGGCAAGGCCTTTCTCCGCT +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGRAGRR*ARPFSA
Trigger: AGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCT...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGCCGCCCCCGAAGGGCTaGGAGAAGGTGGGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLPPPKG*EKVGKA
Trigger: GGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGG...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CTTCTTTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCTGTGCCATCAGCAGGTaGCGCTGTCCCGCTAGCAGA +
Preference number: 4 (lower is better)
Translates to: LLWWALPFVQPPPSLKLLCAISR*RCPASR
Trigger: TCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACA...GAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAAAGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAAGGTGCAGAGGCGTCTaGTGCAGGTGGTTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKRCRGV*CRWLVR
Trigger: CCTCACCAACCACCTGCACCAGACGCCTCTGCACCT...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp AGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACGAAGGAAGCTTGGTGACTAGATaGGTGACCAGCCCCAACTCC +
Preference number: 4 (lower is better)
Translates to: RPPIDPPSPHQPACNYEGSLVTR*VTSPNS
Trigger: GGAGTTGGGGCTGGTCACCCATCTAGTCACCAAGCT...TCCTTCGTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGAGGCGAGTAAGAGTTaGGGACCCGAGTCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGEASKS*GPESSC
Trigger: GCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTC...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCGGAGACGCTGCCTCTaGAGTTTCTGGATCATAATC +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGARRRCL*SFWIII
Trigger: GATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCG...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGGCAACGCTCGGGCGCTaGGCTGCGCCAGACCGAACA +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLATLGR*AAPDRT
Trigger: TGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGC...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACTCAATGACACCAGTCTaGCCATGGATGATGGCCAGG +
Preference number: 4 (lower is better)
Translates to: QTRPPIDPPSPHQPACNYSMTPV*PWMMAR
Trigger: CCTGGCCATCATCCATGGGCAGACTGGTGTCATTGA...GTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGCTCACCACCCTTGTCTaGCCAGTGATTACCGCCAGG +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGLTTLV*PVITAR
Trigger: CCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAG...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGGACCATCCAGCAGTTaGTCCAGGTTCTGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGGPSSS*SRFCRA
Trigger: AGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCC...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAGGACCATCCAGCAGTTaGTCCAGGTTCTGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKGPSSS*SRFCRA
Trigger: AGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCC...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAACTTCTTTCACCTCTGTaGTGGGCAGCTTGTCGCGGG +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKLLSPL*WAACRG
Trigger: CCCGCGACAAGCTGCCCAGCACAGAGGTGAAAGAAG...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGCTTCTTTCACCTCTGTaGTGGGCAGCTTGTCGCGGG +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGLLSPL*WAACRG
Trigger: CCCGCGACAAGCTGCCCAGCACAGAGGTGAAAGAAG...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
CDS-3UTR CCA 90 bp CAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACACTTGCTGTCATGGATaGGCTGGGAGATCACAGGCT +
Preference number: 4 (lower is better)
Translates to: QTRPPIDPPSPHQPACNYTCCHG*AGRSQA
Trigger: AGCCTGTGATCTCCCAGCCCATCCATGACAGCAAGT...GTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAACTTTCACCTCTGTGCTaGGCAGCTTGTCGCGGGTCT +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKLSPLC*AACRGS
Trigger: AGACCCGCGACAAGCTGCCCAGCACAGAGGTGAAAG...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
CDS-3UTR CCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGCTTTCACCTCTGTGCTaGGCAGCTTGTCGCGGGTCT +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGLSPLC*AACRGS
Trigger: AGACCCGCGACAAGCTGCCCAGCACAGAGGTGAAAG...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
CDS-3UTR TCA 90 bp CAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACCGGAGACGCTGCCTCTaGAGTTTCTGGATCATAATC +
Preference number: 4 (lower is better)
Translates to: QTRPPIDPPSPHQPACNYRRRCL*SFWIII
Trigger: GATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCG...GTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR TCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTCCAGAGGGTAATATGTaGACTGTTTGGAGTCCGAGA +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRPEGNM*TVWSPR
Trigger: TCTCGGACTCCAAACAGTTCACATATTACCCTCTGG...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGGGCTATCTGCTCAATaGCACCAGTCTGCCCATGGA +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGGLSAQ*HQSAHG
Trigger: TCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCC...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
53% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGCCTTGGTACTGCAAGTaGGGTCAAGAGGGGTATGGC +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGPWYCK*GQEGYG
Trigger: GCCATACCCCTCTTGACCTCACTTGCAGTACCAAGG...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAACCCAACTCTGAACACTaGTTGCCCACCAGACTGTGG +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKPNSEH*LPTRLW
Trigger: CCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGG...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAAGTCCCCAAAGGCTTaGCATCCATTCTCATCATCC +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRKSPKA*HPFSSS
Trigger: GGATGATGAGAATGGATGGCAAGCCTTTGGGGACTT...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GTAACTACGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACAAGTCCCCAAAGGCTTaGCATCCATTCTCATCATCC +
Preference number: 4 (lower is better)
Translates to: VTTKETAAGRRGLPVCVHKSPKA*HPFSSS
Trigger: GGATGATGAGAATGGATGGCAAGCCTTTGGGGACTT...GTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGCGCTTGCGTTTCAGCTaGAGGAACACCGTTACAGGC +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGRLRFS*RNTVTG
Trigger: GCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCG...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGCTAGAACCGGCCATCTaGGCTCCACCTCCCCCACCC +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLLEPAI*APPPPP
Trigger: GGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAG...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGGCAGTTCGGCCCCCTTaGCTCTCTGGGGCCTCCACT +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLAVRPP*LSGAST
Trigger: AGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGC...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAAGCTGTCTCAGGGGCTaGATCCTTAGGCTCCACGAT +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKSCLRG*ILRLHD
Trigger: ATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAGCT...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAGAGCAGTCATGTCCTTaGGTCCTACAGACACAGCGC +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKEQSCP*VLQTQR
Trigger: GCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTC...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAACTTTCTTCAGCTCCTTaGCCTCCTGCTCTAGCTCCC +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKLSSAP*PPALAP
Trigger: GGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAG...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGCTGTCATGGATGGGCTaGGAGATCACAGGCTTCAGG +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGLSWMG*EITGFR
Trigger: CCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAG...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAACTGTCATGGATGGGCTaGGAGATCACAGGCTTCAGG +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKLSWMG*EITGFR
Trigger: CCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAG...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp TTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCAGACAAGGCCTCCAATAGAGGAGACTTGCTGTCATaGATGGGCTGGGAGATCACA +
Preference number: 4 (lower is better)
Translates to: FSSLTPSWRPMSDKASNRGDLLS*MGWEIT
Trigger: TGTGATCTCCCAGCCCATCCATGACAGCAAGTCTCC...TCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCGTTTATGAACGTCTGTaGGAGAGAAGTCCCCAAAGG +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAVYERL*ERSPQR
Trigger: CCTTTGGGGACTTCTCTCCCACAGACGTTCATAAAC...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAAGCTTGGTGACTAGATaGGTGACCAGCCCCAACTCC +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKSLVTR*VTSPNS
Trigger: GGAGTTGGGGCTGGTCACCCATCTAGTCACCAAGCT...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp CTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCATTCAGTGCACCTGAGGCCACGATGGAGGGGCTaGATTCAAAATCATCATATT +
Preference number: 4 (lower is better)
Translates to: LYRGIWVEVDRGHSVHLRPRWRG*IQNHHI
Trigger: AATATGATGATTTTGAATTCAGCCCCTCCATCGTGG...CCTCAGGTGCACTGAATGGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp TCGCGGGTCTCAGGACCTTTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCACCACGATGGAGGGGCTaGATTCAAAATCATCATATT +
Preference number: 4 (lower is better)
Translates to: SRVSGPFSSLTPSWRPMSPRWRG*IQNHHI
Trigger: AATATGATGATTTTGAATTCAGCCCCTCCATCGTGG...TGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR TCA 90 bp TCGCGGGTCTCAGGACCTTTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCACCCAGATTATTAAATTaGGCAGTCATGTCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: SRVSGPFSSLTPSWRPMSPRLLN*AVMSLG
Trigger: ACCCAAGGACATGACTGCTCAATTTAATAATCTGGG...TGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR TCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTATGGCATACTGTTTATaGACGTCTGTGGGAGAGAAG +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRMAYCL*TSVGEK
Trigger: CTTCTCTCCCACAGACGTTCATAAACAGTATGCCAT...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp TCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTCCAGAGGGTAATATGTaGACTGTTTGGAGTCCGAGA +
Preference number: 4 (lower is better)
Translates to: SLCRDRGRASTLRPHPQAPEGNM*TVWSPR
Trigger: TCTCGGACTCCAAACAGTTCACATATTACCCTCTGG...AGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp AGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACGAAGGACCAGAGGGTAATATGTaGACTGTTTGGAGTCCGAGA +
Preference number: 4 (lower is better)
Translates to: RPPIDPPSPHQPACNYEGPEGNM*TVWSPR
Trigger: TCTCGGACTCCAAACAGTTCACATATTACCCTCTGG...TCCTTCGTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAACATCATATTCGGGGATaGCATCCAGGCCTGGATCGT +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKHHIRG*HPGLDR
Trigger: ACGATCCAGGCCTGGATGGCATCCCCGAATATGATG...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGCATCATATTCGGGGATaGCATCCAGGCCTGGATCGT +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGHHIRG*HPGLDR
Trigger: ACGATCCAGGCCTGGATGGCATCCCCGAATATGATG...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAACTCTGAACACTGCTTaGCCACCAGACTGTGGGCAT +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKTLNTA*PPDCGH
Trigger: ATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGT...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGAGCTCCTTGGCCTCCTaGTCTAGCTCCCGCCGCTCA +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLSSLAS*SSSRRS
Trigger: TGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCT...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAATCAATGACACCAGTCTaGCCATGGATGATGGCCAGG +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKSMTPV*PWMMAR
Trigger: CCTGGCCATCATCCATGGGCAGACTGGTGTCATTGA...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGTTGCCCACCAGACTGTaGGCATGCGCACGAGGTGGG +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLLPTRL*ACARGG
Trigger: CCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAA...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGACTTGCTGTCATGGATaGGCTGGGAGATCACAGGCT +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGTCCHG*AGRSQA
Trigger: AGCCTGTGATCTCCCAGCCCATCCATGACAGCAAGT...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAACTTGCTGTCATGGATaGGCTGGGAGATCACAGGCT +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKTCCHG*AGRSQA
Trigger: AGCCTGTGATCTCCCAGCCCATCCATGACAGCAAGT...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGGAGACTTGCTGTCATaGATGGGCTGGGAGATCACA +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGGDLLS*MGWEIT
Trigger: TGTGATCTCCCAGCCCATCCATGACAGCAAGTCTCC...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAAGTTGGGTGTCCGGAACACAATaGCATACTGTTTATGAACGT +
Preference number: 4 (lower is better)
Translates to: LAQGLGWAAHWGCCTVSWVSGTQ*HTVYER
Trigger: ACGTTCATAAACAGTATGCCATTGTGTTCCGGACAC...CCAACTTACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp TCGCGGGTCTCAGGACCTTTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCAGTGTCCGGAACACAATaGCATACTGTTTATGAACGT +
Preference number: 4 (lower is better)
Translates to: SRVSGPFSSLTPSWRPMSVSGTQ*HTVYER
Trigger: ACGTTCATAAACAGTATGCCATTGTGTTCCGGACAC...TGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAAAGGTCCTGAGACCCGCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCGCATTCACATTAGCATaGAGCTTGGTGACTAGATGG +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAAFTLA*SLVTRW
Trigger: CCATCTAGTCACCAAGCTCCATGCTAATGTGAATGC...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTGCATTCACATTAGCATaGAGCTTGGTGACTAGATGG +
Preference number: 4 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRAFTLA*SLVTRW
Trigger: CCATCTAGTCACCAAGCTCCATGCTAATGTGAATGC...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCCACGATGGAGGGGCTaGATTCAAAATCATCATATT +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAPRWRG*IQNHHI
Trigger: AATATGATGATTTTGAATTCAGCCCCTCCATCGTGG...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCCCAGATTATTAAATTaGGCAGTCATGTCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAPRLLN*AVMSLG
Trigger: ACCCAAGGACATGACTGCTCAATTTAATAATCTGGG...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGCGGAGACGCTGCCTCTaGAGTTTCTGGATCATAATC +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGRRRCL*SFWIII
Trigger: GATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCG...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp AGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACGAAGGAATGGCATACTGTTTATaGACGTCTGTGGGAGAGAAG +
Preference number: 4 (lower is better)
Translates to: RPPIDPPSPHQPACNYEGMAYCL*TSVGEK
Trigger: CTTCTCTCCCACAGACGTTCATAAACAGTATGCCAT...TCCTTCGTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCAGACTGTGGGCATaGGCACGAGGTGGGTCACTG +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLTRLWA*ARGGSL
Trigger: CAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGT...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGAGAAAAAGCCGAGGCTaGCACCTCCTCCAGCGCCTC +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLRKSRG*HLLQRL
Trigger: GAGGCGCTGGAGGAGGTGGCAGCCTCGGCTTTTTCT...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGGCAGCCCATTGGGGCTaGACCGGATTGGTAGGGGTT +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLAAHWG*TGLVGV
Trigger: AACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGC...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCTCAAAATCAGGCATGTaGAATATTTGGGGCACAGCA +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGASKSGM*NIWGTA
Trigger: TGCTGTGCCCCAAATATTGCACATGCCTGATTTTGA...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGCCTGGCAAACCTCCATaGGAGGGGCCTTCACAGCCA +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLPGKPP*EGPSQP
Trigger: TGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGG...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGGGCATGCGCACGAGGTaGGTCACTGTGTGTCACCAG +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLGMRTR*VTVCHQ
Trigger: CTGGTGACACACAGTGACCCACCTCGTGCGCATGCC...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCATCATGTTCTTCTTaGTTACATGCAGGACACCCA +
Preference number: 4 (lower is better)
Translates to: AHLSLCRDRGRASTLRPHPSCSS*LHAGHP
Trigger: TGGGTGTCCTGCATGTAACCAAGAAGAACATGATGG...ATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACCCATCATGTTCTTCTTaGTTACATGCAGGACACCCA +
Preference number: 4 (lower is better)
Translates to: QTRPPIDPPSPHQPACNYPSCSS*LHAGHP
Trigger: TGGGTGTCCTGCATGTAACCAAGAAGAACATGATGG...GTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp TTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCAGACAAGGCCTCCAATAGAGTTTATGAACGTCTGTaGGAGAGAAGTCCCCAAAGG +
Preference number: 4 (lower is better)
Translates to: FSSLTPSWRPMSDKASNRVYERL*ERSPQR
Trigger: CCTTTGGGGACTTCTCTCCCACAGACGTTCATAAAC...TCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGTGTGCCATCAGCAGGTaGCGCTGTCCCGCTAGCAGA +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLCAISR*RCPASR
Trigger: TCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACA...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGAGGTGCAGAGGCGTCTaGTGCAGGTGGTTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLRCRGV*CRWLVR
Trigger: CCTCACCAACCACCTGCACCAGACGCCTCTGCACCT...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGGAGGCGAGTAAGAGTTaGGGACCCGAGTCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLEASKS*GPESSC
Trigger: GCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTC...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp CTTCTTTGGTGGGCCCTACCCTTTGTACAGCCTCCACCCTCATTAAAACTGCTCACACACCTTCCAAGGTaGTTGTCCTTACCTGTGCTG +
Preference number: 4 (lower is better)
Translates to: LLWWALPFVQPPPSLKLLTHLPR*LSLPVL
Trigger: CAGCACAGGTAAGGACAACCACCTTGGAAGGTGTGT...GAGCAGTTTTAATGAGGGTGGAGGCTGTACAAAGGGTAGGGCCCACCAAAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGGCACACTCCCAACTCTaGACACTGCTTGCCCACCAG +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLAHSQL*TLLAHQ
Trigger: CTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGC...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAACCAGAGGGTAATATGTaGACTGTTTGGAGTCCGAGA +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKPEGNM*TVWSPR
Trigger: TCTCGGACTCCAAACAGTTCACATATTACCCTCTGG...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp GCTGAGCTGGTCCCCCTATTCCTCCCCAAGGGCTCACCTCTCTCTTTGCAGAGATTCTTCTTGGTTACATaGAGGACACCCAGATTATTA +
Preference number: 4 (lower is better)
Translates to: AELVPLFLPKGSPLSLQRFFLVT*RTPRLL
Trigger: TAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAA...TCTCTGCAAAGAGAGAGGTGAGCCCTTGGGGAGGAATAGGGGGACCAGCTCAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGAAGTCCCCAAAGGCTTaGCATCCATTCTCATCATCC +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGKSPKA*HPFSSS
Trigger: GGATGATGAGAATGGATGGCAAGCCTTTGGGGACTT...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp CAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACTCAAAATCAGGCATGTaGAATATTTGGGGCACAGCA +
Preference number: 4 (lower is better)
Translates to: QTRPPIDPPSPHQPACNYSKSGM*NIWGTA
Trigger: TGCTGTGCCCCAAATATTGCACATGCCTGATTTTGA...GTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGTTTATGAACGTCTGTaGGAGAGAAGTCCCCAAAGG +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGVYERL*ERSPQR
Trigger: CCTTTGGGGACTTCTCTCCCACAGACGTTCATAAAC...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGATTTGGGGCACAGCATaGGCTCCGCTGCGCAACAGT +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLIWGTA*APLRNS
Trigger: ACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAAT...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp TTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCAGACAAGGCCTCCAATAGAGCATTCACATTAGCATaGAGCTTGGTGACTAGATGG +
Preference number: 4 (lower is better)
Translates to: FSSLTPSWRPMSDKASNRAFTLA*SLVTRW
Trigger: CCATCTAGTCACCAAGCTCCATGCTAATGTGAATGC...TCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR TCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAATGGCATACTGTTTATaGACGTCTGTGGGAGAGAAG +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKMAYCL*TSVGEK
Trigger: CTTCTCTCCCACAGACGTTCATAAACAGTATGCCAT...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGCCCAACTCTGAACACTaGTTGCCCACCAGACTGTGG +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLPNSEH*LPTRLW
Trigger: CCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGG...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCTTCTTCTTGGTTACATaGAGGACACCCAGATTATTA +
Preference number: 4 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAFFLVT*RTPRLL
Trigger: TAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAA...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGCGCTTGCGTTTCAGCTaGAGGAACACCGTTACAGGC +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLRLRFS*RNTVTG
Trigger: GCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCG...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGAGCTGTCTCAGGGGCTaGATCCTTAGGCTCCACGAT +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLSCLRG*ILRLHD
Trigger: ATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAGCT...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAACCATCATGTTCTTCTTaGTTACATGCAGGACACCCA +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKPSCSS*LHAGHP
Trigger: TGGGTGTCCTGCATGTAACCAAGAAGAACATGATGG...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGCTGTCATGGATGGGCTaGGAGATCACAGGCTTCAGG +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLLSWMG*EITGFR
Trigger: CCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAG...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGAGCTTGGTGACTAGATaGGTGACCAGCCCCAACTCC +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLSLVTR*VTSPNS
Trigger: GGAGTTGGGGCTGGTCACCCATCTAGTCACCAAGCT...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCATTCACATTAGCATaGAGCTTGGTGACTAGATGG +
Preference number: 4 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGAFTLA*SLVTRW
Trigger: CCATCTAGTCACCAAGCTCCATGCTAATGTGAATGC...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGCATCATATTCGGGGATaGCATCCAGGCCTGGATCGT +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLHHIRG*HPGLDR
Trigger: ACGATCCAGGCCTGGATGGCATCCCCGAATATGATG...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACTCTGAACACTGCTTaGCCACCAGACTGTGGGCAT +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLTLNTA*PPDCGH
Trigger: ATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGT...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACGAAGGATTCTTCTTGGTTACATaGAGGACACCCAGATTATTA +
Preference number: 4 (lower is better)
Translates to: RPPIDPPSPHQPACNYEGFFLVT*RTPRLL
Trigger: TAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAA...TCCTTCGTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR GCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAATCAAAATCAGGCATGTaGAATATTTGGGGCACAGCA +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKSKSGM*NIWGTA
Trigger: TGCTGTGCCCCAAATATTGCACATGCCTGATTTTGA...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAGTGTCCGGAACACAATaGCATACTGTTTATGAACGT +
Preference number: 4 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKVSGTQ*HTVYER
Trigger: ACGTTCATAAACAGTATGCCATTGTGTTCCGGACAC...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGCCAGAGGGTAATATGTaGACTGTTTGGAGTCCGAGA +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLPEGNM*TVWSPR
Trigger: TCTCGGACTCCAAACAGTTCACATATTACCCTCTGG...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGAAGTCCCCAAAGGCTTaGCATCCATTCTCATCATCC +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLKSPKA*HPFSSS
Trigger: GGATGATGAGAATGGATGGCAAGCCTTTGGGGACTT...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGCCATCATGTTCTTCTTaGTTACATGCAGGACACCCA +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLPSCSS*LHAGHP
Trigger: TGGGTGTCCTGCATGTAACCAAGAAGAACATGATGG...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGCCACGATGGAGGGGCTaGATTCAAAATCATCATATT +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLPRWRG*IQNHHI
Trigger: AATATGATGATTTTGAATTCAGCCCCTCCATCGTGG...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR TCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGCCCAGATTATTAAATTaGGCAGTCATGTCCTTGGGT +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLPRLLN*AVMSLG
Trigger: ACCCAAGGACATGACTGCTCAATTTAATAATCTGGG...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR GCA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGTTCTTCTTGGTTACATaGAGGACACCCAGATTATTA +
Preference number: 4 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLFFLVT*RTPRLL
Trigger: TAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAA...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS CCA 90 bp TACTCGCGAGCTCGCTGCAGTGTGTCAAGGGCCTGTGGTTCGCCCTaGGGAGCCTCCGGGGGCGTCCTGGGCTCCTCTGCCCCCTCGCCA +
Preference number: 5 (lower is better)
Translates to: YSRARCSVSRACGSP*GASGGVLGSSAPSP
Trigger: TGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAGCTCGCGAGTA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CCA 90 bp GCGCGCGTTGTACTCGCGAGCTCGCTGCAGTGTGTCAAGGGCCTGTaGTTCGCCCTGGGGAGCCTCCGGGGGCGTCCTGGGCTCCTCTGC +
Preference number: 5 (lower is better)
Translates to: ARVVLASSLQCVKGL*FALGSLRGRPGLLC
Trigger: GCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAGCTCGCGAGTACAACGCGCGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CCA 90 bp GAGCCCCCAGAACCTCCACCCATGTGGGATCCGCCCCCGAAGGGCTaGGAGAAGGTGGGCAAGGCCTTTCTCCGCTTCCTCTGCACTTCC +
Preference number: 5 (lower is better)
Translates to: EPPEPPPMWDPPPKG*EKVGKAFLRFLCTS
Trigger: GGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CCA 90 bp ACCGGCCATCTGCGCTCCACCTCCCCCACCCGGATAGCAGCCCATTaGGGCTGCACCGGATTGGTAGGGGTTGTAGGCCAAGGAGGAGGA +
Preference number: 5 (lower is better)
Translates to: TGHLRSTSPTRIAAH*GCTGLVGVVGQGGG
Trigger: TCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp CCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGCCCTACCCGGATAGCAGCCCATaGGGGCTGCACCGGATTGGT +
Preference number: 5 (lower is better)
Translates to: PIHRLGWHGLLPFFGGPYPDSSP*GLHRIG
Trigger: ACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGG...GTAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS GCA 90 bp TGCAATATTTGGGGCACAGCATGGGCTCCGCTGCGCAACAGTGCCTaGAACAGCTCTGGGGCTGCAGCACCTGCCCGGAGAGCCAAGTGG +
Preference number: 5 (lower is better)
Translates to: CNIWGTAWAPLRNSA*NSSGAAAPARRAKW
Trigger: CCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp GAGCTGGTCCCCCTATTCCTCCCCAAGGGCTCACCTCTCTCTTTGCAGAGACAGCCGAACAGGCGCGCGTaGTACTCGCGAGCTCGCTGC +
Preference number: 5 (lower is better)
Translates to: ELVPLFLPKGSPLSLQRQPNRRA*YSRARC
Trigger: GCAGCGAGCTCGCGAGTACAACGCGCGCCTGTTCGG...CTGTCTCTGCAAAGAGAGAGGTGAGCCCTTGGGGAGGAATAGGGGGACCAGCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp AGACCCATGTCAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCCCGAACAGGCGCGCGTaGTACTCGCGAGCTCGCTGC +
Preference number: 5 (lower is better)
Translates to: RPMSDKASNRPTKSPPASPNRRA*YSRARC
Trigger: GCAGCGAGCTCGCGAGTACAACGCGCGCCTGTTCGG...GCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS GCA 90 bp CATGTGCAATATTTGGGGCACAGCATGGGCTCCGCTGCGCAACAGTaGCTGCAACAGCTCTGGGGCTGCAGCACCTGCCCGGAGAGCCAA +
Preference number: 5 (lower is better)
Translates to: HVQYLGHSMGSAAQQ*LQQLWGCSTCPESQ
Trigger: TTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCCGAACAGGCGCGCGTaGTACTCGCGAGCTCGCTGC +
Preference number: 5 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAPNRRA*YSRARC
Trigger: GCAGCGAGCTCGCGAGTACAACGCGCGCCTGTTCGG...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTCCGAACAGGCGCGCGTaGTACTCGCGAGCTCGCTGC +
Preference number: 5 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRPNRRA*YSRARC
Trigger: GCAGCGAGCTCGCGAGTACAACGCGCGCCTGTTCGG...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS CCA 90 bp ACAGCGCACACTCCCAACTCTGAACACTGCTTGCCCACCAGACTGTaGGCATGCGCACGAGGTGGGTCACTGTGTGTCACCAGGTCCACC +
Preference number: 5 (lower is better)
Translates to: TAHTPNSEHCLPTRL*ACARGGSLCVTRST
Trigger: GGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CCA 90 bp AACCTCCACCCATGTGGGATCCGCCCCCGAAGGGCTGGGAGAAGGTaGGCAAGGCCTTTCTCCGCTTCCTCTGCACTTCCTCCTTGTCTT +
Preference number: 5 (lower is better)
Translates to: NLHPCGIRPRRAGRR*ARPFSASSALPPCL
Trigger: AAGACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp CTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAAGTTGGGAGGCCCCTGGAGACTaGCTGTCATGGATGGGCTGG +
Preference number: 5 (lower is better)
Translates to: LAQGLGWAAHWGCCTVSWEAPGD*LSWMGW
Trigger: CCAGCCCATCCATGACAGCAAGTCTCCAGGGGCCTC...CCAACTTACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp GCTGAGCTGGTCCCCCTATTCCTCCCCAAGGGCTCACCTCTCTCTTTGCAGAGAGAGGCCCCTGGAGACTaGCTGTCATGGATGGGCTGG +
Preference number: 5 (lower is better)
Translates to: AELVPLFLPKGSPLSLQREAPGD*LSWMGW
Trigger: CCAGCCCATCCATGACAGCAAGTCTCCAGGGGCCTC...TCTCTGCAAAGAGAGAGGTGAGCCCTTGGGGAGGAATAGGGGGACCAGCTCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp CTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAAGTTGGCCGGATAGCAGCCCATaGGGGCTGCACCGGATTGGT +
Preference number: 5 (lower is better)
Translates to: LAQGLGWAAHWGCCTVSWPDSSP*GLHRIG
Trigger: ACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGG...CCAACTTACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp CGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACCAGGCTTGGACAGCCCTGGCCCTaGGTACTGCAAGTGAGGTCA +
Preference number: 5 (lower is better)
Translates to: RRRLPLGDGVFLYVSTRLGQPWP*VLQVRS
Trigger: TGACCTCACTTGCAGTACCAAGGGCCAGGGCTGTCC...AAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS TCA 90 bp AGGGCTGCATCCCCCAGGGACAGCCCTGGCCCTTGGTACTGCAAGTaGGGTCAAGAGGGGTATGGCCTCGGAAGTTTCTTTGGGTATCCC +
Preference number: 5 (lower is better)
Translates to: RAASPRDSPGPWYCK*GQEGYGLGSFFGYP
Trigger: GGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAGGGCCAGGGCTGTCCCTGGGGGATGCAGCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCGAGGCCCCTGGAGACTaGCTGTCATGGATGGGCTGG +
Preference number: 5 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAEAPGD*LSWMGW
Trigger: CCAGCCCATCCATGACAGCAAGTCTCCAGGGGCCTC...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCCGGATAGCAGCCCATaGGGGCTGCACCGGATTGGT +
Preference number: 5 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAPDSSP*GLHRIG
Trigger: ACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGG...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS CCA 90 bp GGGAGATCTTCAGGTTCGAGGCCCCTGGAGACTTGCTGTCATGGATaGGCTGGGAGATCACAGGCTTCAGGGGCAAGGAGAAGGAGCCAT +
Preference number: 5 (lower is better)
Translates to: GRSSGSRPLETCCHG*AGRSQASGARRRSH
Trigger: ATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAAGTCTCCAGGGGCCTCGAACCTGAAGATCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CCA 90 bp CCAAGTCCCCACCAGCCAGCTTGTAACTACGAAGGAGACTGCCGCTaGGAGACGGGGTCTTCCTGTATGTGTCCACCAGGCTTCTCAACC +
Preference number: 5 (lower is better)
Translates to: PSPHQPACNYEGDCR*ETGSSCMCPPGFST
Trigger: GGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAGCTGGCTGGTGGGGACTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp CAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACGAGGCCCCTGGAGACTaGCTGTCATGGATGGGCTGG +
Preference number: 5 (lower is better)
Translates to: QTRPPIDPPSPHQPACNYEAPGD*LSWMGW
Trigger: CCAGCCCATCCATGACAGCAAGTCTCCAGGGGCCTC...GTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp CAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACCCGGATAGCAGCCCATaGGGGCTGCACCGGATTGGT +
Preference number: 5 (lower is better)
Translates to: QTRPPIDPPSPHQPACNYPDSSP*GLHRIG
Trigger: ACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGG...GTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAACCGAACAGGCGCGCGTaGTACTCGCGAGCTCGCTGC +
Preference number: 5 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKPNRRA*YSRARC
Trigger: GCAGCGAGCTCGCGAGTACAACGCGCGCCTGTTCGG...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp CTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCATTCAGTGCACCTGAGGCACCTTCCAAGGTGGTaGTCCTTACCTGTGCTGGGC +
Preference number: 5 (lower is better)
Translates to: LYRGIWVEVDRGHSVHLRHLPRW*SLPVLG
Trigger: GCCCAGCACAGGTAAGGACAACCACCTTGGAAGGTG...CCTCAGGTGCACTGAATGGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS CCA 90 bp ATCTTCAGGTTCGAGGCCCCTGGAGACTTGCTGTCATGGATGGGCTaGGAGATCACAGGCTTCAGGGGCAAGGAGAAGGAGCCATCGCTA +
Preference number: 5 (lower is better)
Translates to: IFRFEAPGDLLSWMG*EITGFRGKEKEPSL
Trigger: TAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAAGTCTCCAGGGGCCTCGAACCTGAAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp CTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAAGTTGGCTGAAGCCTCGCTGTTaGGGCTGTTCCACAATCACC +
Preference number: 5 (lower is better)
Translates to: LAQGLGWAAHWGCCTVSWLKPRC*GCSTIT
Trigger: GGTGATTGTGGAACAGCCCAAACAGCGAGGCTTCAG...CCAACTTACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp TTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTGGGGTAACTCTGAACACTGCTaGCCCACCAGACTGTGGGCA +
Preference number: 5 (lower is better)
Translates to: LQRQRKGIHFEAPSTGWGNSEHC*PTRLWA
Trigger: TGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTT...ACCCCAGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp AGACCCATGTCAGACAAGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCAGGCATGTGCAATATTaGGGGCACAGCATGGGCTCC +
Preference number: 5 (lower is better)
Translates to: RPMSDKASNRPTKSPPASRHVQY*GHSMGS
Trigger: GGAGCCCATGCTGTGCCCCAAATATTGCACATGCCT...GCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCTGAAGCCTCGCTGTTaGGGCTGTTCCACAATCACC +
Preference number: 5 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGALKPRC*GCSTIT
Trigger: GGTGATTGTGGAACAGCCCAAACAGCGAGGCTTCAG...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp GTAACTACGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACCTGAAGCCTCGCTGTTaGGGCTGTTCCACAATCACC +
Preference number: 5 (lower is better)
Translates to: VTTKETAAGRRGLPVCVHLKPRC*GCSTIT
Trigger: GGTGATTGTGGAACAGCCCAAACAGCGAGGCTTCAG...GTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCAACTCTGAACACTGCTaGCCCACCAGACTGTGGGCA +
Preference number: 5 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGANSEHC*PTRLWA
Trigger: TGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTT...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp GTAACTACGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACAACTCTGAACACTGCTaGCCCACCAGACTGTGGGCA +
Preference number: 5 (lower is better)
Translates to: VTTKETAAGRRGLPVCVHNSEHC*PTRLWA
Trigger: TGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTT...GTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp CCCCATCCACAGGCTGGGGTGGCACGGCCTGCTTCCCTTCTTTGGTGGGCCCTACTCAATGTCGTCTTTTaGCACCTTATCACAGAGCAA +
Preference number: 5 (lower is better)
Translates to: PHPQAGVARPASLLWWALLNVVF*HLITEQ
Trigger: TTGCTCTGTGATAAGGTGCAAAAAGACGACATTGAG...TAGGGCCCACCAAAGAAGGGAAGCAGGCCGTGCCACCCCAGCCTGTGGATGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCAGGCATGTGCAATATTaGGGGCACAGCATGGGCTCC +
Preference number: 5 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGARHVQY*GHSMGS
Trigger: GGAGCCCATGCTGTGCCCCAAATATTGCACATGCCT...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS GCA 90 bp TGGACTGCCAGGTGTACAGGGTATAGTCCCTCAAAATCAGGCATGTaGAATATTTGGGGCACAGCATGGGCTCCGCTGCGCAACAGTGCC +
Preference number: 5 (lower is better)
Translates to: WTARCTGYSPSKSGM*NIWGTAWAPLRNSA
Trigger: GGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGGGACTATACCCTGTACACCTGGCAGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp TCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATCCACAGGCTAGGCATGTGCAATATTaGGGGCACAGCATGGGCTCC +
Preference number: 5 (lower is better)
Translates to: SLCRDRGRASTLRPHPQARHVQY*GHSMGS
Trigger: GGAGCCCATGCTGTGCCCCAAATATTGCACATGCCT...AGCCTGTGGATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS CCA 90 bp AGGTGTACAGGGTATAGTCCCTCAAAATCAGGCATGTGCAATATTTaGGGCACAGCATGGGCTCCGCTGCGCAACAGTGCCTGCAACAGC +
Preference number: 5 (lower is better)
Translates to: RCTGYSPSKSGMCNI*GTAWAPLRNSACNS
Trigger: GCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGGGACTATACCCTGTACACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp CTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAAGTTGGTCCATCATGTTCTTCTaGGTTACATGCAGGACACCC +
Preference number: 5 (lower is better)
Translates to: LAQGLGWAAHWGCCTVSWSIMFF*VTCRTP
Trigger: GGGTGTCCTGCATGTAACCAAGAAGAACATGATGGA...CCAACTTACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTGAAGTCCCCAAAGGCTaGCCATCCATTCTCATCATC +
Preference number: 5 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYREVPKG*PSILII
Trigger: GATGATGAGAATGGATGGCAAGCCTTTGGGGACTTC...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCGAAGTCCCCAAAGGCTaGCCATCCATTCTCATCATC +
Preference number: 5 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGAEVPKG*PSILII
Trigger: GATGATGAGAATGGATGGCAAGCCTTTGGGGACTTC...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCACATTAGCATGGAGCTaGGTGACTAGATGGGTGACC +
Preference number: 5 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGATLAWS*VTRWVT
Trigger: GGTCACCCATCTAGTCACCAAGCTCCATGCTAATGT...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCAGCAGAGTCTTCACCTaGGTACTGCAAGTGAGGTCA +
Preference number: 5 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGASRVFT*VLQVRS
Trigger: TGACCTCACTTGCAGTACCAAGGTGAAGACTCTGCT...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTAGCAGAGTCTTCACCTaGGTACTGCAAGTGAGGTCA +
Preference number: 5 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRSRVFT*VLQVRS
Trigger: TGACCTCACTTGCAGTACCAAGGTGAAGACTCTGCT...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS TCA 90 bp CTTCAGGGGCAAGGAGAAGGAGCCATCGCTAGCTCGAAGGAAAGCTaGGAAGCGCAGCCGTACAATGCTCAGATCCATGACTTTCTTCAG +
Preference number: 5 (lower is better)
Translates to: LQGQGEGAIASSKES*EAQPYNAQIHDFLQ
Trigger: CTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS TCA 90 bp GCTTCCTCTGCACTTCCTCCTTGTCTTCCACCAGAGGGTAATATGTaGACTGTTTGGAGTCCGAGACATCGCCCCCACGCTTGCGTTTCA +
Preference number: 5 (lower is better)
Translates to: ASSALPPCLPPEGNM*TVWSPRHRPHACVS
Trigger: TGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAGACAAGGAGGAAGTGCAGAGGAAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGCTGAAGCCTCGCTGTTaGGGCTGTTCCACAATCACC +
Preference number: 5 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGLKPRC*GCSTIT
Trigger: GGTGATTGTGGAACAGCCCAAACAGCGAGGCTTCAG...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAACTGAAGCCTCGCTGTTaGGGCTGTTCCACAATCACC +
Preference number: 5 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKLKPRC*GCSTIT
Trigger: GGTGATTGTGGAACAGCCCAAACAGCGAGGCTTCAG...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAAACTCTGAACACTGCTaGCCCACCAGACTGTGGGCA +
Preference number: 5 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKNSEHC*PTRLWA
Trigger: TGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTT...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCTCCATCATGTTCTTCTaGGTTACATGCAGGACACCC +
Preference number: 5 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGASIMFF*VTCRTP
Trigger: GGGTGTCCTGCATGTAACCAAGAAGAACATGATGGA...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp CTCTATTCTCGCTCAGGGACTGGGATGGGCAGCACATTGGGGTTGCTGTACCGTTCCATCATGTTCTTCTaGGTTACATGCAGGACACCC +
Preference number: 5 (lower is better)
Translates to: LYSRSGTGMGSTLGLLYRSIMFF*VTCRTP
Trigger: GGGTGTCCTGCATGTAACCAAGAAGAACATGATGGA...ACGGTACAGCAACCCCAATGTGCTGCCCATCCCAGTCCCTGAGCGAGAATAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp GTAACTACGAAGGAGACTGCCGCTGGGAGACGGGGTCTTCCTGTATGTGTCCACTCCATCATGTTCTTCTaGGTTACATGCAGGACACCC +
Preference number: 5 (lower is better)
Translates to: VTTKETAAGRRGLPVCVHSIMFF*VTCRTP
Trigger: GGGTGTCCTGCATGTAACCAAGAAGAACATGATGGA...GTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp AGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACGAAGGAGAAGTCCCCAAAGGCTaGCCATCCATTCTCATCATC +
Preference number: 5 (lower is better)
Translates to: RPPIDPPSPHQPACNYEGEVPKG*PSILII
Trigger: GATGATGAGAATGGATGGCAAGCCTTTGGGGACTTC...TCCTTCGTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGAGGCATGTGCAATATTaGGGGCACAGCATGGGCTCC +
Preference number: 5 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGRHVQY*GHSMGS
Trigger: GGAGCCCATGCTGTGCCCCAAATATTGCACATGCCT...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAAGGCATGTGCAATATTaGGGGCACAGCATGGGCTCC +
Preference number: 5 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKRHVQY*GHSMGS
Trigger: GGAGCCCATGCTGTGCCCCAAATATTGCACATGCCT...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp GCTCACCTCTCTCTTTGCAGAGACAGAGGAAGGGCATCCACTTTGAGGCCCCATACATTAGCATGGAGCTaGGTGACTAGATGGGTGACC +
Preference number: 5 (lower is better)
Translates to: AHLSLCRDRGRASTLRPHTLAWS*VTRWVT
Trigger: GGTCACCCATCTAGTCACCAAGCTCCATGCTAATGT...ATGGGGCCTCAAAGTGGATGCCCTTCCTCTGTCTCTGCAAAGAGAGAGGTGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp AGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACGAAGGAACATTAGCATGGAGCTaGGTGACTAGATGGGTGACC +
Preference number: 5 (lower is better)
Translates to: RPPIDPPSPHQPACNYEGTLAWS*VTRWVT
Trigger: GGTCACCCATCTAGTCACCAAGCTCCATGCTAATGT...TCCTTCGTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGGAGGCCCCTGGAGACTaGCTGTCATGGATGGGCTGG +
Preference number: 5 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLEAPGD*LSWMGW
Trigger: CCAGCCCATCCATGACAGCAAGTCTCCAGGGGCCTC...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCACCCAGATTATTAAATaGAGCAGTCATGTCCTTGGG +
Preference number: 5 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGATQIIK*SSHVLG
Trigger: CCCAAGGACATGACTGCTCAATTTAATAATCTGGGT...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp TCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGCCCTCAATGTCGTCTTTTaGCACCTTATCACAGAGCAA +
Preference number: 5 (lower is better)
Translates to: SIRQGCCTEGSGWKLTGALNVVF*HLITEQ
Trigger: TTGCTCTGTGATAAGGTGCAAAAAGACGACATTGAG...GGCCCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAGAAGTCCCCAAAGGCTaGCCATCCATTCTCATCATC +
Preference number: 5 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKEVPKG*PSILII
Trigger: GATGATGAGAATGGATGGCAAGCCTTTGGGGACTTC...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGGAAGTCCCCAAAGGCTaGCCATCCATTCTCATCATC +
Preference number: 5 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGEVPKG*PSILII
Trigger: GATGATGAGAATGGATGGCAAGCCTTTGGGGACTTC...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp GGGAGGGGTCTTCCCCTTTATTTGACCCACCGAGATGTGGGCTTGAGGTTTAAAACATTAGCATGGAGCTaGGTGACTAGATGGGTGACC +
Preference number: 5 (lower is better)
Translates to: GRGLPLYLTHRDVGLRFKTLAWS*VTRWVT
Trigger: GGTCACCCATCTAGTCACCAAGCTCCATGCTAATGT...TTTAAACCTCAAGCCCACATCTCGGTGGGTCAAATAAAGGGGAAGACCCCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGAGCAGAGTCTTCACCTaGGTACTGCAAGTGAGGTCA +
Preference number: 5 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGSRVFT*VLQVRS
Trigger: TGACCTCACTTGCAGTACCAAGGTGAAGACTCTGCT...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp AGGCCTCCAATAGACCCACCAAGTCCCCACCAGCCAGCTTGTAACTACGAAGGAACCCAGATTATTAAATaGAGCAGTCATGTCCTTGGG +
Preference number: 5 (lower is better)
Translates to: RPPIDPPSPHQPACNYEGTQIIK*SSHVLG
Trigger: CCCAAGGACATGACTGCTCAATTTAATAATCTGGGT...TCCTTCGTAGTTACAAGCTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp ATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCGGGTCCATCATGTTCTTCTaGGTTACATGCAGGACACCC +
Preference number: 5 (lower is better)
Translates to: ISIRQGCCTEGSGWKLTGSIMFF*VTCRTP
Trigger: GGGTGTCCTGCATGTAACCAAGAAGAACATGATGGA...CCCGGTCAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGAACTCTGAACACTGCTaGCCCACCAGACTGTGGGCA +
Preference number: 5 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLNSEHC*PTRLWA
Trigger: TGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTT...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp TTCAGCAGCCTGACTCCCTCATGGAGACCCATGTCAGACAAGGCCTCCAATAGACTCAATGTCGTCTTTTaGCACCTTATCACAGAGCAA +
Preference number: 5 (lower is better)
Translates to: FSSLTPSWRPMSDKASNRLNVVF*HLITEQ
Trigger: TTGCTCTGTGATAAGGTGCAAAAAGACGACATTGAG...TCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS-3UTR CAA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGAGCAGAGTCTTCACCTaGGTACTGCAAGTGAGGTCA +
Preference number: 5 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLSRVFT*VLQVRS
Trigger: TGACCTCACTTGCAGTACCAAGGTGAAGACTCTGCT...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS-3UTR CAA 90 bp AATAAGATTTCGATTAGACAGGGATGCTGTACAGAGGGATCTGGGTGGAAGTTGACCCAGATTATTAAATaGAGCAGTCATGTCCTTGGG +
Preference number: 5 (lower is better)
Translates to: NKISIRQGCCTEGSGWKLTQIIK*SSHVLG
Trigger: CCCAAGGACATGACTGCTCAATTTAATAATCTGGGT...CAACTTCCACCCAGATCCCTCTGTACAGCATCCCTGTCTAATCGAAATCTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
CDS TCA 72 bp GGCGCTGTCCCGCTAGCAGAGCACGCGCGTCTGCGGTaGCGCCGTAGTCCAGCAACGCTCGGGCGCTGCGCT +
Preference number: 6 (lower is better)
Translates to: GAVPLAEHARLR*RRSPATLGRCA
Trigger: AGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CCA 72 bp GCTCGCTGCAGTGTGTCAAGGGCCTGTGGTTCGCCCTaGGGAGCCTCCGGGGGCGTCCTGGGCTCCTCTGCC +
Preference number: 6 (lower is better)
Translates to: ARCSVSRACGSP*GASGGVLGSSA
Trigger: GGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS GCA 72 bp CCTGCCCGGAGAGCCAAGTGGAGGGCGGAGTCTCCGTaGCGATCCAGCAGCGTGGGGTCTGCACCCACCTGC +
Preference number: 6 (lower is better)
Translates to: PARRAKWRAESP*RSSSVGSAPTC
Trigger: GCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CCA 72 bp AGCTCTGGGGCTGCAGCACCTGCCCGGAGAGCCAAGTaGAGGGCGGAGTCTCCGTGCCGATCCAGCAGCGTG +
Preference number: 6 (lower is better)
Translates to: SSGAAAPARRAK*RAESPCRSSSV
Trigger: CACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS GCA 72 bp TCCGCTGCGCAACAGTGCCTGCAACAGCTCTGGGGCTaGAGCACCTGCCCGGAGAGCCAAGTGGAGGGCGGA +
Preference number: 6 (lower is better)
Translates to: SAAQQCLQQLWG*STCPESQVEGG
Trigger: TCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS GCA 72 bp TGGGGCACAGCATGGGCTCCGCTGCGCAACAGTGCCTaGAACAGCTCTGGGGCTGCAGCACCTGCCCGGAGA +
Preference number: 6 (lower is better)
Translates to: WGTAWAPLRNSA*NSSGAAAPARR
Trigger: TCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CCA 72 bp GAACCTCCACCCATGTGGGATCCGCCCCCGAAGGGCTaGGAGAAGGTGGGCAAGGCCTTTCTCCGCTTCCTC +
Preference number: 6 (lower is better)
Translates to: EPPPMWDPPPKG*EKVGKAFLRFL
Trigger: GAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CCA 72 bp CTGCGCTCCACCTCCCCCACCCGGATAGCAGCCCATTaGGGCTGCACCGGATTGGTAGGGGTTGTAGGCCAA +
Preference number: 6 (lower is better)
Translates to: LRSTSPTRIAAH*GCTGLVGVVGQ
Trigger: TTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS GCA 72 bp GGTTGTAGGCCAAGGAGGAGGAGAAAAAGCCGAGGCTaGCACCTCCTCCAGCGCCTCCATAACCCCCAGCGG +
Preference number: 6 (lower is better)
Translates to: GCRPRRRRKSRG*HLLQRLHNPQR
Trigger: CCGCTGGGGGTTATGGAGGCGCTGGAGGAGGTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS GCA 72 bp CAGACACAGCGCACACTCCCAACTCTGAACACTGCTTaGCCACCAGACTGTGGGCATGCGCACGAGGTGGGT +
Preference number: 6 (lower is better)
Translates to: QTQRTLPTLNTA*PPDCGHAHEVG
Trigger: ACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS GCA 72 bp GCATGTGCAATATTTGGGGCACAGCATGGGCTCCGCTaGGCAACAGTGCCTGCAACAGCTCTGGGGCTGCAG +
Preference number: 6 (lower is better)
Translates to: ACAIFGAQHGLR*ATVPATALGLQ
Trigger: CTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CAA 72 bp ACAGACACAGCGCACACTCCCAACTCTGAACACTGCTaGCCCACCAGACTGTGGGCATGCGCACGAGGTGGG +
Preference number: 6 (lower is better)
Translates to: TDTAHTPNSEHC*PTRLWACARGG
Trigger: CCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CAA 72 bp CTTCTCCCCTCAGCCCAGACACACCTTCCAAGGTGGTaGTCCTTACCTGTGCTGGGCAGCTTGTCGCGGGTC +
Preference number: 6 (lower is better)
Translates to: LLPSAQTHLPRW*SLPVLGSLSRV
Trigger: GACCCGCGACAAGCTGCCCAGCACAGGTAAGGACAACCACCTTGGAAGGTGTGTCTGGGCTGAGGGGAGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237330.2
CDS GCA 72 bp CCTACAGACACAGCGCACACTCCCAACTCTGAACACTaGTTGCCCACCAGACTGTGGGCATGCGCACGAGGT +
Preference number: 6 (lower is better)
Translates to: PTDTAHTPNSEH*LPTRLWACARG
Trigger: ACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CCA 72 bp CTGCTTGCCCACCAGACTGTGGGCATGCGCACGAGGTaGGTCACTGTGTGTCACCAGGTCCACCTCAATCTT +
Preference number: 6 (lower is better)
Translates to: LLAHQTVGMRTR*VTVCHQVHLNL
Trigger: AAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CCA 72 bp ACTCCCAACTCTGAACACTGCTTGCCCACCAGACTGTaGGCATGCGCACGAGGTGGGTCACTGTGTGTCACC +
Preference number: 6 (lower is better)
Translates to: TPNSEHCLPTRL*ACARGGSLCVT
Trigger: GGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTGGGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CCA 72 bp TTCGAGGCCCCTGGAGACTTGCTGTCATGGATGGGCTaGGAGATCACAGGCTTCAGGGGCAAGGAGAAGGAG +
Preference number: 6 (lower is better)
Translates to: FEAPGDLLSWMG*EITGFRGKEKE
Trigger: CTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAAGTCTCCAGGGGCCTCGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CCA 72 bp TCAGGTTCGAGGCCCCTGGAGACTTGCTGTCATGGATaGGCTGGGAGATCACAGGCTTCAGGGGCAAGGAGA +
Preference number: 6 (lower is better)
Translates to: SGSRPLETCCHG*AGRSQASGARR
Trigger: TCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAAGTCTCCAGGGGCCTCGAACCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS TCA 72 bp TCCCCCAGGGACAGCCCTGGCCCTTGGTACTGCAAGTaGGGTCAAGAGGGGTATGGCCTCGGAAGTTTCTTT +
Preference number: 6 (lower is better)
Translates to: SPRDSPGPWYCK*GQEGYGLGSFF
Trigger: AAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAGGGCCAGGGCTGTCCCTGGGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237791.2
CDS GCA 72 bp GAGTCCGAGACATCGCCCCCACGCTTGCGTTTCAGCTaGAGGAACACCGTTACAGGCCTCTCGATCTTCATC +
Preference number: 6 (lower is better)
Translates to: ESETSPPRLRFS*RNTVTGLSIFI
Trigger: GATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CAA 72 bp GTGAACTGTTTGGAGTCCGAGACATCGCCCCCACGCTaGCGTTTCAGCTGCAGGAACACCGTTACAGGCCTC +
Preference number: 6 (lower is better)
Translates to: VNCLESETSPPR*RFSCRNTVTGL
Trigger: GAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CCA 72 bp GGGTATAGTCCCTCAAAATCAGGCATGTGCAATATTTaGGGCACAGCATGGGCTCCGCTGCGCAACAGTGCC +
Preference number: 6 (lower is better)
Translates to: GYSPSKSGMCNI*GTAWAPLRNSA
Trigger: GGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGGGACTATACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS TCA 72 bp CAAGGAGAAGGAGCCATCGCTAGCTCGAAGGAAAGCTaGGAAGCGCAGCCGTACAATGCTCAGATCCATGAC +
Preference number: 6 (lower is better)
Translates to: QGEGAIASSKES*EAQPYNAQIHD
Trigger: GTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS TCA 72 bp GCACTTCCTCCTTGTCTTCCACCAGAGGGTAATATGTaGACTGTTTGGAGTCCGAGACATCGCCCCCACGCT +
Preference number: 6 (lower is better)
Translates to: ALPPCLPPEGNM*TVWSPRHRPHA
Trigger: AGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAGACAAGGAGGAAGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS GCA 72 bp AGGTGTACAGGGTATAGTCCCTCAAAATCAGGCATGTaGAATATTTGGGGCACAGCATGGGCTCCGCTGCGC +
Preference number: 6 (lower is better)
Translates to: RCTGYSPSKSGM*NIWGTAWAPLR
Trigger: GCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGGGACTATACCCTGTACACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CCA 72 bp TCCGGAACACAATGGCATACTGTTTATGAACGTCTGTaGGAGAGAAGTCCCCAAAGGCTTGCCATCCATTCT +
Preference number: 6 (lower is better)
Translates to: SGTQWHTVYERL*ERSPQRLAIHS
Trigger: AGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAGTATGCCATTGTGTTCCGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CAA 90 bp GGCATACTGTTTATGAACGTCTGTGGGAGAGAAGTCCCCAAAGGCTaGCCATCCATTCTCATCATCCTCATAGAACCGAACCTCAATGTC +
Preference number: 6 (lower is better)
Translates to: GILFMNVCGREVPKG*PSILIILIEPNLNV
Trigger: GACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAGTATGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CAA 72 bp TTTATGAACGTCTGTGGGAGAGAAGTCCCCAAAGGCTaGCCATCCATTCTCATCATCCTCATAGAACCGAAC +
Preference number: 6 (lower is better)
Translates to: FMNVCGREVPKG*PSILIILIEPN
Trigger: GTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CAA 90 bp TCCATTCTCATCATCCTCATAGAACCGAACCTCAATGTCGTCTTTTaGCACCTTATCACAGAGCAAATAAACTTCGTCTCCACCGCGCAC +
Preference number: 6 (lower is better)
Translates to: SILIILIEPNLNVVF*HLITEQINFVSTAH
Trigger: GTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAGACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2
CDS CAA 72 bp ATCATCCTCATAGAACCGAACCTCAATGTCGTCTTTTaGCACCTTATCACAGAGCAAATAAACTTCGTCTCC +
Preference number: 6 (lower is better)
Translates to: IILIEPNLNVVF*HLITEQINFVS
Trigger: GGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAGACGACATTGAGGTTCGGTTCTATGAGGATGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073116.13
ENSMUST00000111881.4
ENSMUST00000236591.2
ENSMUST00000237330.2
ENSMUST00000237791.2