Pregenerated sensors for NFE2L3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029832Ensembl transcript IDs: ENSMUST00000005103.12, ENSMUST00000160133.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | CTTCACATAGATATTTATGAATTGTGCAGGAACATGTaGATTCTCCCAACTTCACAGAAGCATAATCTTGAT | + |
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Preference number: 3 (lower is better) Translates to: LHIDIYELCRNM*ILPTSQKHNLD Trigger: ATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGCACAATTCATAAATATCTATGTGAAG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CCA 90 bp | GTACTTGGCAAATTGCTGTGTCTTCCAAGTAGGAGAGTCTTCAATCCACAGAGGCCGAGGCGGGGCGGGTaGGGCAGAGTGGGAGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: VLGKLLCLPSRRVFNPQRPRRGG*GRVGAA Trigger: AGCTGCTCCCACTCTGCCCCACCCGCCCCGCCTCGG...CCTCTGTGGATTGAAGACTCTCCTACTTGGAAGACACAGCAATTTGCCAAGTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160133.2 |
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| CDS-3UTR GCA 90 bp | TACTTGGCAAATTGCTGTGTCTTCCAAGTAGGAGAGTCTTCAATCCACAGAGGTCAGCTCTTCCCAAAGTaGGGCGGCCGGCGGCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: YLANCCVFQVGESSIHRGQLFPK*GGRRRQ Trigger: CTGCCGCCGCCGGCCGCCGCACTTTGGGAAGAGCTG...ACCTCTGTGGATTGAAGACTCTCCTACTTGGAAGACACAGCAATTTGCCAAGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160133.2 |
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| CDS-3UTR CCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAACCGAGGCGGGGCGGGTaGGGCAGAGTGGGAGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKPRRGG*GRVGAA Trigger: AGCTGCTCCCACTCTGCCCCACCCGCCCCGCCTCGG...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR GCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAACAGCTCTTCCCAAAGTaGGGCGGCCGGCGGCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKQLFPK*GGRRRQ Trigger: CTGCCGCCGCCGGCCGCCGCACTTTGGGAAGAGCTG...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CCA 90 bp | TACTTGGCAAATTGCTGTGTCTTCCAAGTAGGAGAGTCTTCAATCCACAGAGGTGCGGGTGGGGCAGAGTaGGAGCAGCTCTTCCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: YLANCCVFQVGESSIHRGAGGAE*EQLFPK Trigger: CTTTGGGAAGAGCTGCTCCCACTCTGCCCCACCCGC...ACCTCTGTGGATTGAAGACTCTCCTACTTGGAAGACACAGCAATTTGCCAAGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160133.2 |
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| CDS-3UTR GCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAAACAGAATCGTGAGTTaGAGGAGGCCGCCGCCCGCC | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKNRIVS*RRPPPA Trigger: GGCGGGCGGCGGCCTCCTGCAACTCACGATTCTGTT...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAGCGGGTGGGGCAGAGTaGGAGCAGCTCTTCCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKAGGAE*EQLFPK Trigger: CTTTGGGAAGAGCTGCTCCCACTCTGCCCCACCCGC...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAAGCATCCCGTTCTCCTaGCTCCCGCATCCGCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKSIPFS*LPHPPA Trigger: TGCAGGCGGATGCGGGAGCCAGGAGAACGGGATGCT...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR GCA 90 bp | AAGCCTTTGTATTTTGTAATGTACTTGGCAAATTGCTGTGTCTTCCAAGTAGGAAACAGAATCGTGAGTTaGAGGAGGCCGCCGCCCGCC | + |
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Preference number: 4 (lower is better) Translates to: KPLYFVMYLANCCVFQVGNRIVS*RRPPPA Trigger: GGCGGGCGGCGGCCTCCTGCAACTCACGATTCTGTT...TCCTACTTGGAAGACACAGCAATTTGCCAAGTACATTACAAAATACAAAGGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160133.2 |
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| CDS-3UTR GCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAACGGTGGAAGAGACATTaGAGGAGTGGCTTGCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKRWKRH*RSGLLR Trigger: CCTGAGCAAGCCACTCCTGCAATGTCTCTTCCACCG...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR TCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAATGGAATGTCTTCCACTaGGATGCCCTCCAGAGAATG | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKWNVFH*DALQRM Trigger: CATTCTCTGGAGGGCATCTCAGTGGAAGACATTCCA...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAATGTTTATGGGGTTCTaGGTAGCAGCCTCCTACAGC | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKMFMGF*VAASYS Trigger: GCTGTAGGAGGCTGCTACCCAGAACCCCATAAACAT...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAGGGGCTTCCTTTTTGTaGCCTGATGAGATGAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKGASFL*PDEMSS Trigger: AGAACTCATCTCATCAGGCCACAAAAAGGAAGCCCC...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR TCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAAAACTTCCAATGGACTaGAACCTGTGGCCAATGACA | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKKLPMD*NLWPMT Trigger: TGTCATTGGCCACAGGTTTCAGTCCATTGGAAGTTT...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR TCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAATGTGGCCTGATGAGATaGGTTCTTTGGGTACAATCA | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKCGLMR*VLWVQS Trigger: TGATTGTACCCAAAGAACTCATCTCATCAGGCCACA...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR GCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAACGACTTCTCAGACCATaGAAAAGATTCAGATGTGGG | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKRLLRP*KRFRCG Trigger: CCCACATCTGAATCTTTTGCATGGTCTGAGAAGTCG...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR GCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAACAGAAAAGGGAATGTaGAGAGCTTTAGCACGCTGT | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKTEKGM*RALARC Trigger: ACAGCGTGCTAAAGCTCTGCACATTCCCTTTTCTGT...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAACAAAAGATTCAGATGTaGGCTCTGATGCACCTGACT | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKQKIQM*ALMHLT Trigger: AGTCAGGTGCATCAGAGCCCACATCTGAATCTTTTG...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAATATCAAGGCATCCACTaGTTTTCTGCGACTTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKYQGIH*FSATSQ Trigger: CTGAGAAGTCGCAGAAAACCAGTGGATGCCTTGATA...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR TCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAGTTAGGTTCCTCATTTaGTTGTCAAACGGTGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKVRFLI*LSNGGR Trigger: TCTTCCACCGTTTGACAATCAAATGAGGAACCTAAC...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR TCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAGTCCTATGGTCCATATaGCAATGTTTATGGGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKVLWSI*QCLWGS Trigger: AGAACCCCATAAACATTGTCATATGGACCATAGGAC...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR GCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAACACTTTCACAGACACTaGTCAGAAAAGGTGGAATGT | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKHFHRH*SEKVEC Trigger: ACATTCCACCTTTTCTGAGCAGTGTCTGTGAAAGTG...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR GCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAAGGCCATGTAGCTTCTaGCTCATTATGTCAATAGCT | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKRPCSF*LIMSIA Trigger: AGCTATTGACATAATGAGGCAGAAGCTACATGGCCT...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR GCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAATGGCTGTACTGAAGTaGATATTGGCTTGGATTGAC | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKMAVLK*ILAWID Trigger: GTCAATCCAAGCCAATATGCACTTCAGTACAGCCAT...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAGCTCAAGTTTCTATCTaGGTTATCAAGGCATCCACT | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKAQVSI*VIKAST Trigger: AGTGGATGCCTTGATAACCCAGATAGAAACTTGAGC...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR GCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAGCTTCTTTCTTTGCTTaGAAGTTACATATATCATCC | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKASFFA*KLHISS Trigger: GGATGATATATGTAACTTGCAAGCAAAGAAAGAAGC...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CCA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAATCATGGCTTATAGCTTaGCTCAAATTTATGTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: AGTCGFSQLHRSIILIPKSWLIA*LKFMFC Trigger: ACAGAACATAAATTTGAGCCAAGCTATAAGCCATGA...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CAA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAACGGTGGAAGAGACATaGCAGGAGTGGCTTGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: AGTCGFSQLHRSIILIPKTVEET*QEWLAQ Trigger: CTGAGCAAGCCACTCCTGCAATGTCTCTTCCACCGT...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CAA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAACATTGCAGGAGTGGCTaGCTCAGGATTTGTATGAGG | + |
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Preference number: 5 (lower is better) Translates to: AGTCGFSQLHRSIILIPKHCRSG*LRICMR Trigger: CCTCATACAAATCCTGAGCAAGCCACTCCTGCAATG...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CAA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAATTTGGGGCTTCCTTTTaGTGGCCTGATGAGATGAGT | + |
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Preference number: 5 (lower is better) Translates to: AGTCGFSQLHRSIILIPKFGASF*WPDEMS Trigger: ACTCATCTCATCAGGCCACAAAAAGGAAGCCCCAAA...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CAA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAAGGTGCTGTTGTAACTaGAATTTAATGAGAGCCCGG | + |
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Preference number: 5 (lower is better) Translates to: AGTCGFSQLHRSIILIPKRCCCN*NLMRAR Trigger: CCGGGCTCTCATTAAATTCAAGTTACAACAGCACCT...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CAA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAGTGGTCATGAAATACTaGCTGACATTCAAGGGACAC | + |
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Preference number: 5 (lower is better) Translates to: AGTCGFSQLHRSIILIPKVVMKY*LTFKGH Trigger: GTGTCCCTTGAATGTCAGCAAGTATTTCATGACCAC...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS TCA 90 bp | CGCTATTGTAACCTACAGTCCCATCATAAATACGGTAAGAATTTGTaGGAGAGGTGCTGTTGTAACTTGAATTTAATGAGAGCCCGGAAT | + |
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Preference number: 5 (lower is better) Translates to: RYCNLQSHHKYGKNL*ERCCCNLNLMRARN Trigger: ATTCCGGGCTCTCATTAAATTCAAGTTACAACAGCACCTCTCTCACAAATTCTTACCGTATTTATGATGGGACTGTAGGTTACAATAGCG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS TCA 90 bp | ATTGACATCATGGCTTATAGCTTGGCTCAAATTTATGTTCTGTGCTaGGGAATTAACACTTTCACAGACACTGCTCAGAAAAGGTGGAAT | + |
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Preference number: 5 (lower is better) Translates to: IDIMAYSLAQIYVLC*GINTFTDTAQKRWN Trigger: ATTCCACCTTTTCTGAGCAGTGTCTGTGAAAGTGTTAATTCCTCAGCACAGAACATAAATTTGAGCCAAGCTATAAGCCATGATGTCAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CAA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAATGGTTCTTCAAAAAGTaGAGAAACTTCCAATGGACT | + |
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Preference number: 5 (lower is better) Translates to: AGTCGFSQLHRSIILIPKWFFKK*RNFQWT Trigger: AGTCCATTGGAAGTTTCTCAACTTTTTGAAGAACCA...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS-3UTR CAA 90 bp | GCAGGAACATGTGGATTCTCCCAACTTCACAGAAGCATAATCTTGATTCCTAAAGATGAGATGAGTTCTTaGGGTACAATCAAAACAGTT | + |
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Preference number: 5 (lower is better) Translates to: AGTCGFSQLHRSIILIPKDEMSS*GTIKTV Trigger: AACTGTTTTGATTGTACCCAAAGAACTCATCTCATC...TTTAGGAATCAAGATTATGCTTCTGTGAAGTTGGGAGAATCCACATGTTCCTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS GCA 72 bp | ACACGGAGCCCTACCAAGCTCAACAGAATCGTGAGTTaGAGGAGGCCGCCGCCCGCCCACCAAGGCTTCGGG | + |
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Preference number: 6 (lower is better) Translates to: TRSPTKLNRIVS*RRPPPAHQGFG Trigger: CCCGAAGCCTTGGTGGGCGGGCGGCGGCCTCCTGCAACTCACGATTCTGTTGAGCTTGGTAGGGCTCCGTGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005103.12 ENSMUST00000160133.2 |
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| CDS CCA 72 bp | TCTTCCAAAGAGAAAGATGTATCTGACCAATGTAGATaGCTCTCGTTCCTAGCCTCGGTGATCTTCTCGGCT | + |
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Preference number: 6 (lower is better) Translates to: SSKEKDVSDQCR*LSFLASVIFSA Trigger: AGCCGAGAAGATCACCGAGGCTAGGAACGAGAGCCATCTACATTGGTCAGATACATCTTTCTCTTTGGAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000005103.12 ENSMUST00000160133.2 |
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| CDS CCA 72 bp | TCTGCGACTTCTCAGACCATGCAAAAGATTCAGATGTaGGCTCTGATGCACCTGACTGTAAATGGTAAGTGT | + |
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Preference number: 6 (lower is better) Translates to: SATSQTMQKIQM*ALMHLTVNGKC Trigger: ACACTTACCATTTACAGTCAGGTGCATCAGAGCCCACATCTGAATCTTTTGCATGGTCTGAGAAGTCGCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS GCA 72 bp | GTTCCTCATTTGATTGTCAAACGGTGGAAGAGACATTaGAGGAGTGGCTTGCTCAGGATTTGTATGAGGATT | + |
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Preference number: 6 (lower is better) Translates to: VPHLIVKRWKRH*RSGLLRICMRI Trigger: AATCCTCATACAAATCCTGAGCAAGCCACTCCTGCAATGTCTCTTCCACCGTTTGACAATCAAATGAGGAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS GCA 72 bp | TTTCTATCTGGGTTATCAAGGCATCCACTGGTTTTCTaGGACTTCTCAGACCATGCAAAAGATTCAGATGTG | + |
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Preference number: 6 (lower is better) Translates to: FLSGLSRHPLVF*DFSDHAKDSDV Trigger: CACATCTGAATCTTTTGCATGGTCTGAGAAGTCGCAGAAAACCAGTGGATGCCTTGATAACCCAGATAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS TCA 72 bp | ATGGCTTATAGCTTGGCTCAAATTTATGTTCTGTGCTaGGGAATTAACACTTTCACAGACACTGCTCAGAAA | + |
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Preference number: 6 (lower is better) Translates to: MAYSLAQIYVLC*GINTFTDTAQK Trigger: TTTCTGAGCAGTGTCTGTGAAAGTGTTAATTCCTCAGCACAGAACATAAATTTGAGCCAAGCTATAAGCCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS TCA 72 bp | AGCTTCTGCCTCATTATGTCAATAGCTTTGCTACATTaGGTTTGCTCATTTTTAAGGGCTTCTTTCTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: SFCLIMSIALLH*VCSFLRASFFA Trigger: AGCAAAGAAAGAAGCCCTTAAAAATGAGCAAACTCAATGTAGCAAAGCTATTGACATAATGAGGCAGAAGCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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| CDS TCA 72 bp | AACCTACAGTCCCATCATAAATACGGTAAGAATTTGTaGGAGAGGTGCTGTTGTAACTTGAATTTAATGAGA | + |
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Preference number: 6 (lower is better) Translates to: NLQSHHKYGKNL*ERCCCNLNLMR Trigger: TCTCATTAAATTCAAGTTACAACAGCACCTCTCTCACAAATTCTTACCGTATTTATGATGGGACTGTAGGTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005103.12 |
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