RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NF2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000009073

Ensembl transcript IDs: ENSMUST00000053079.13, ENSMUST00000056290.13, ENSMUST00000093374.11, ENSMUST00000109910.9, ENSMUST00000124878.3, ENSMUST00000152656.8, ENSMUST00000164190.8, ENSMUST00000172305.2

Found 397 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGGGAGGAGACAGAGGTCCTGGTCACAGCTGGGTTCCCAGGCACTaGTGGGAATGTGACTGGGAAGCTCCTGGCCCACCAAAGGCTCAT +
Preference number: 1 (lower is better)
Translates to: GGGDRGPGHSWVPRH*WECDWEAPGPPKAH
Trigger: ATGAGCCTTTGGTGGGCCAGGAGCTTCCCAGTCACATTCCCATCAGTGCCTGGGAACCCAGCTGTGACCAGGACCTCTGTCTCCTCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR GCA 90 bp AGGGGAGGCCCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTaGATGGTAGATTTCAGCCAGCTTTCACACTGGACTCCCACAGCC +
Preference number: 1 (lower is better)
Translates to: RGGPSQKPSWGVGST*MVDFSQLSHWTPTA
Trigger: GGCTGTGGGAGTCCAGTGTGAAAGCTGGCTGAAATCTACCATGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGGGCCTCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR CCA 90 bp CAGGCCCATCCTGTTGGTGTCAGGAGCAGCAGATGTGGCAGGAGGTaGCCGGGTCACCTGCTAGAGTTCTTCAAAGAAGGCCACTCGGGA +
Preference number: 1 (lower is better)
Translates to: QAHPVGVRSSRCGRR*PGHLLEFFKEGHSG
Trigger: TCCCGAGTGGCCTTCTTTGAAGAACTCTAGCAGGTGACCCGGCCACCTCCTGCCACATCTGCTGCTCCTGACACCAACAGGATGGGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056290.13
3UTR GCA 90 bp GGACTCCCACAGCCGATTCTCAATGTCAGCAAGCACAGCAACCCGTaGACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACA +
Preference number: 1 (lower is better)
Translates to: GLPQPILNVSKHSNP*TTVLGCRKDGSPHT
Trigger: TGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGGTTGCTGTGCTTGCTGACATTGAGAATCGGCTGTGGGAGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR CCA 90 bp ACTTGGGAGGCAGAGGCAGGCATAGTACAGCATTTGAGGCCAGGCTaGCATAGAGAATGCCAGACCAGCCAGAACTACACAGCAAGGCCC +
Preference number: 1 (lower is better)
Translates to: TWEAEAGIVQHLRPG*HRECQTSQNYTARP
Trigger: GGGCCTTGCTGTGTAGTTCTGGCTGGTCTGGCATTCTCTATGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGCCTCTGCCTCCCAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
3UTR GCA 90 bp CCACAGGCAAGAGCAAGGCCTCAGTGTCCTGCACTGAGAGTGACTTaGTGTTTCAGTAGCAGGGTACCCCTGCCTATGCTTCAGAAACCA +
Preference number: 1 (lower is better)
Translates to: PQARARPQCPALRVT*CFSSRVPLPMLQKP
Trigger: TGGTTTCTGAAGCATAGGCAGGGGTACCCTGCTACTGAAACAGCAAGTCACTCTCAGTGCAGGACACTGAGGCCTTGCTCTTGCCTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 90 bp GGAGTGGGTAGCACCTGCATGGTAGATTTCAGCCAGCTTTCACACTaGACTCCCACAGCCGATTCTCAATGTCAGCAAGCACAGCAACCC +
Preference number: 1 (lower is better)
Translates to: GVGSTCMVDFSQLSH*TPTADSQCQQAQQP
Trigger: GGGTTGCTGTGCTTGCTGACATTGAGAATCGGCTGTGGGAGTCCAGTGTGAAAGCTGGCTGAAATCTACCATGCAGGTGCTACCCACTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR CCA 90 bp AGAGTGCTATCACAGGTGCCCAAAGATGCTGAGGTGACCATTGGGTaGCTGCCTATGACAAAGTGGCCCAATAACAGCCCGGGAACAAGG +
Preference number: 1 (lower is better)
Translates to: RVLSQVPKDAEVTIG*LPMTKWPNNSPGTR
Trigger: CCTTGTTCCCGGGCTGTTATTGGGCCACTTTGTCATAGGCAGCCACCCAATGGTCACCTCAGCATCTTTGGGCACCTGTGATAGCACTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 90 bp CAGGAGCCTCACATGAAGAGCTGTTTGAAAAGAGTAACAGAGGAATaGAAGCCCATGGGCACTGGCGTGGCCTCAAGGCACCTAGGAGAG +
Preference number: 1 (lower is better)
Translates to: QEPHMKSCLKRVTEE*KPMGTGVASRHLGE
Trigger: CTCTCCTAGGTGCCTTGAGGCCACGCCAGTGCCCATGGGCTTCCATTCCTCTGTTACTCTTTTCAAACAGCTCTTCATGTGAGGCTCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 90 bp GCTGTCAGCAATAATGTCGAAGCTCGGTATGTCAGGAGGCAGTGGTaGTGGAATTGGGTTCATGGGTGGATAGGTGGGCTTGGTGGCGAT +
Preference number: 1 (lower is better)
Translates to: AVSNNVEARYVRRQW*WNWVHGWIGGLGGD
Trigger: ATCGCCACCAAGCCCACCTATCCACCCATGAACCCAATTCCACCACCACTGCCTCCTGACATACCGAGCTTCGACATTATTGCTGACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
3UTR CCA 90 bp CAAGCTGTCAGCAATAATGTCGAAGCTCGGTATGTCAGGAGGCAGTaGTGGTGGAATTGGGTTCATGGGTGGATAGGTGGGCTTGGTGGC +
Preference number: 1 (lower is better)
Translates to: QAVSNNVEARYVRRQ*WWNWVHGWIGGLGG
Trigger: GCCACCAAGCCCACCTATCCACCCATGAACCCAATTCCACCACCACTGCCTCCTGACATACCGAGCTTCGACATTATTGCTGACAGCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
3UTR GCA 90 bp AGCCGATTCTCAATGTCAGCAAGCACAGCAACCCGTGCACCACAGTaGTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGTATTT +
Preference number: 1 (lower is better)
Translates to: SRFSMSASTATRAPQ*LGAGRMAAHTQQVF
Trigger: AAATACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGGTTGCTGTGCTTGCTGACATTGAGAATCGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR CCA 90 bp GCTGAGGTACTTCTGAGTGGGGTTTGGACCTCACCTTCCAAGAAATaGCGAAATGGTTACACCCACCATTCCTCAAATACCAGGGCGCCC +
Preference number: 1 (lower is better)
Translates to: AEVLLSGVWTSPSKK*RNGYTHHSSNTRAP
Trigger: GGGCGCCCTGGTATTTGAGGAATGGTGGGTGTAACCATTTCGCCATTTCTTGGAAGGTGAGGTCCAAACCCCACTCAGAAGTACCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 90 bp GTCAGCAATAATGTCGAAGCTCGGTATGTCAGGAGGCAGTGGTGGTaGAATTGGGTTCATGGGTGGATAGGTGGGCTTGGTGGCGATTTC +
Preference number: 1 (lower is better)
Translates to: VSNNVEARYVRRQWW*NWVHGWIGGLGGDF
Trigger: GAAATCGCCACCAAGCCCACCTATCCACCCATGAACCCAATTCCACCACCACTGCCTCCTGACATACCGAGCTTCGACATTATTGCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
3UTR CCA 90 bp GGAACAAGGTGGTGTGCCTCAGTTTCTCAAAAACAAACCGTACTGTaGAACATCGCCTTGCTCAGCCCCTCAGCTCAGCTGTCCTCAGTT +
Preference number: 1 (lower is better)
Translates to: GTRWCASVSQKQTVL*NIALLSPSAQLSSV
Trigger: AACTGAGGACAGCTGAGCTGAGGGGCTGAGCAAGGCGATGTTCCACAGTACGGTTTGTTTTTGAGAAACTGAGGCACACCACCTTGTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 90 bp TCTCTCTCTCTCTCTCTCGGAGCTGAGGTACTTCTGAGTGGGGTTTaGACCTCACCTTCCAAGAAATGGCGAAATGGTTACACCCACCAT +
Preference number: 1 (lower is better)
Translates to: SLSLSLGAEVLLSGV*TSPSKKWRNGYTHH
Trigger: ATGGTGGGTGTAACCATTTCGCCATTTCTTGGAAGGTGAGGTCCAAACCCCACTCAGAAGTACCTCAGCTCCGAGAGAGAGAGAGAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR GCA 90 bp CTCAATGTCAGCAAGCACAGCAACCCGTGCACCACAGTGCTTGGGTaGAGGAAGGATGGCAGCCCACACACAACAAGTATTTATATAAGA +
Preference number: 1 (lower is better)
Translates to: LNVSKHSNPCTTVLG*RKDGSPHTTSIYIR
Trigger: TCTTATATAAATACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGGTTGCTGTGCTTGCTGACATTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR CCA 90 bp TGGCTGCCTATGACAAAGTGGCCCAATAACAGCCCGGGAACAAGGTaGTGTGCCTCAGTTTCTCAAAAACAAACCGTACTGTGGAACATC +
Preference number: 1 (lower is better)
Translates to: WLPMTKWPNNSPGTR*CASVSQKQTVLWNI
Trigger: GATGTTCCACAGTACGGTTTGTTTTTGAGAAACTGAGGCACACCACCTTGTTCCCGGGCTGTTATTGGGCCACTTTGTCATAGGCAGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 90 bp CGCTGTAGGAGATGTTTCGGATTTCATTCCATGGGAAGGAGATCTTaGGGGTCAGCCTGTTCTCAGGGTCATAGATATGAAGCCCAAGAG +
Preference number: 1 (lower is better)
Translates to: RCRRCFGFHSMGRRS*GSACSQGHRYEAQE
Trigger: CTCTTGGGCTTCATATCTATGACCCTGAGAACAGGCTGACCCCCAAGATCTCCTTCCCATGGAATGAAATCCGAAACATCTCCTACAGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124878.3
3UTR GCA 90 bp TTAGTTGACTCAACACAAATGCTGCTAACTCATCTCCTGGGTGTCTaGAATGGGACAGTTGCAGATGAGCTTGTCCATGCACAGCTCCTT +
Preference number: 1 (lower is better)
Translates to: LVDSTQMLLTHLLGV*NGTVADELVHAQLL
Trigger: AAGGAGCTGTGCATGGACAAGCTCATCTGCAACTGTCCCATTGCAGACACCCAGGAGATGAGTTAGCAGCATTTGTGTTGAGTCAACTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
3UTR CCA 90 bp ATCATGGAGTGTGTGAGGCACATGGTAAGCATTTGTTGCCTAGCATaGAGGCAACCCATAGTGTTAGCTTGTGTGACTGTTAGTAGCCTG +
Preference number: 1 (lower is better)
Translates to: IMECVRHMVSICCLA*RQPIVLACVTVSSL
Trigger: CAGGCTACTAACAGTCACACAAGCTAACACTATGGGTTGCCTCCATGCTAGGCAACAAATGCTTACCATGTGCCTCACACACTCCATGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR TCA 90 bp TATCTCCATGGAAAGTCGCTTCATGTCCGTATCCTTGAAGTCAAATaGCAAGCTGTCAGCAATAATGTCGAAGCTCGGTATGTCAGGAGG +
Preference number: 1 (lower is better)
Translates to: YLHGKSLHVRILEVK*QAVSNNVEARYVRR
Trigger: CCTCCTGACATACCGAGCTTCGACATTATTGCTGACAGCTTGTCATTTGACTTCAAGGATACGGACATGAAGCGACTTTCCATGGAGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
3UTR-3UTR CCA 90 bp TGGAGGGGAGGCCCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTGCATGGTGCACCACAGTGCTTaGGTGCAGGAAGGATGGCAG +
Preference number: 2 (lower is better)
Translates to: WRGGPSQKPSWGVGSTCMVHHSA*VQEGWQ
Trigger: CTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCAC...CATGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGGGCCTCCCCTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR CAA 90 bp TCTGTGAAGGCTGCTTGTACCAGGGACTTTGAGGCTCTGGCCCTGTaGGCAGGAACGGTTAGTCACTGTTGCTGGGAGTCAGCCTCTGGG +
Preference number: 2 (lower is better)
Translates to: SVKAACTRDFEALAL*AGTVSHCCWESASG
Trigger: CCCAGAGGCTGACTCCCAGCAACAGTGACTAACCGTTCCTGCCAACAGGGCCAGAGCCTCAAAGTCCCTGGTACAAGCAGCCTTCACAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR-3UTR CCA 90 bp TCAAAGCAGGCTGGAGACATTCTGGGGACCCATTCGAGCTCTCTCTCTCTCTCCCTTCTACCCCATGCTTaGAGGGGAGGCCCATCCCAG +
Preference number: 2 (lower is better)
Translates to: SKQAGDILGTHSSSLSLSLLPHA*RGGPSQ
Trigger: CTGGGATGGGCCTCCCCTCCAAGCATGGGGTAGAAG...GGAGAGAGAGAGAGAGCTCGAATGGGTCCCCAGAATGTCTCCAGCCTGCTTTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR-3UTR GCA 90 bp TCAAAGCAGGCTGGAGACATTCTGGGGACCCATTCGAGCTCTCTCTCTCTCTCCACCACAGTGCTTGGGTaGAGGAAGGATGGCAGCCCA +
Preference number: 2 (lower is better)
Translates to: SKQAGDILGTHSSSLSLSTTVLG*RKDGSP
Trigger: TGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGT...GGAGAGAGAGAGAGAGCTCGAATGGGTCCCCAGAATGTCTCCAGCCTGCTTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR-3UTR CCA 90 bp CGTGCACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGTATCAGGCCCATCCTGTTaGTGTCAGGAGCAGCAGATG +
Preference number: 2 (lower is better)
Translates to: RAPQCLGAGRMAAHTQQVSGPSC*CQEQQM
Trigger: CATCTGCTGCTCCTGACACCAACAGGATGGGCCTGA...TACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR-3UTR CCA 90 bp GCAACCCGTGCACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAAACTGATGGTTCCTTTTaGGTCAGGCCCATCCTGTTG +
Preference number: 2 (lower is better)
Translates to: ATRAPQCLGAGRMAAHTQTDGSF*VRPILL
Trigger: CAACAGGATGGGCCTGACCCAAAAGGAACCATCAGT...TTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGGTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR-3UTR CCA 90 bp CTCCATTTCAGCTTCATCCCTGGCTCTGCCCCGGTGCTCCGCATACCAAGCCGTGGGAGCAATTCCTCTTaGGCTAAAAATCCCCGCTTG +
Preference number: 2 (lower is better)
Translates to: LHFSFIPGSAPVLRIPSRGSNSS*AKNPRL
Trigger: CAAGCGGGGATTTTTAGCCCAAGAGGAATTGCTCCC...ACGGCTTGGTATGCGGAGCACCGGGGCAGAGCCAGGGATGAAGCTGAAATGGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000124878.3
3UTR-3UTR CCA 90 bp AAATCCCCAACCCCCATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCTCAGGCCCATCCTGTTaGTGTCAGGAGCAGCAGATG +
Preference number: 2 (lower is better)
Translates to: KSPTPIAGSELSQSTLLPSGPSC*CQEQQM
Trigger: CATCTGCTGCTCCTGACACCAACAGGATGGGCCTGA...GGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAATGGGGGTTGGGGATTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR-3UTR TCA 90 bp CAAGGTGGTGTGCCTCAGTTTCTCAAAAACAAACCGTACTGTGGAACATCGCCTGCACTGATGGGAATGTaGCTGGGAAGCTCCTGGCCC +
Preference number: 2 (lower is better)
Translates to: QGGVPQFLKNKPYCGTSPALMGM*LGSSWP
Trigger: GGGCCAGGAGCTTCCCAGTCACATTCCCATCAGTGC...AGGCGATGTTCCACAGTACGGTTTGTTTTTGAGAAACTGAGGCACACCACCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR-3UTR GCA 90 bp TCAGCCTTAGGTTTCAGACTAGAGTGCTATCACAGGTGCCCAAAGATGCTGAGGCACACTTCTACCCCATaGTTGGAGGGGAGGCCCATC +
Preference number: 2 (lower is better)
Translates to: SALGFRLECYHRCPKMLRHTSTP*LEGRPI
Trigger: GATGGGCCTCCCCTCCAAGCATGGGGTAGAAGTGTG...CCTCAGCATCTTTGGGCACCTGTGATAGCACTCTAGTCTGAAACCTAAGGCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR-3UTR CCA 90 bp TCAGCCTTAGGTTTCAGACTAGAGTGCTATCACAGGTGCCCAAAGATGCTGAGGAGGAGACAGAGGTCCTaGTCACAGCTGGGTTCCCAG +
Preference number: 2 (lower is better)
Translates to: SALGFRLECYHRCPKMLRRRQRS*SQLGSQ
Trigger: CTGGGAACCCAGCTGTGACCAGGACCTCTGTCTCCT...CCTCAGCATCTTTGGGCACCTGTGATAGCACTCTAGTCTGAAACCTAAGGCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR-3UTR CCA 90 bp AGAGCATCCACTCCAAGCAGCAACTCTGTGCCCTTTTTATTCCGGATTGTAAAGTTTCAGCTTCATCCCTaGCTCTGCCCCGGTGCTCCG +
Preference number: 2 (lower is better)
Translates to: RASTPSSNSVPFLFRIVKFQLHP*LCPGAP
Trigger: CGGAGCACCGGGGCAGAGCCAGGGATGAAGCTGAAA...CTTTACAATCCGGAATAAAAAGGGCACAGAGTTGCTGCTTGGAGTGGATGCTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000124878.3
3UTR-3UTR CCA 90 bp TGTCGAAGCTCGGTATGTCAGGAGGCAGTGGTGGTGGAATTGGGTTCATGGGTGTTCGCTCTGCTTCTCTaGCTTCTTGCAAGTCTTGCT +
Preference number: 2 (lower is better)
Translates to: CRSSVCQEAVVVELGSWVFALLL*LLASLA
Trigger: AGCAAGACTTGCAAGAAGCCAGAGAAGCAGAGCGAA...CACCCATGAACCCAATTCCACCACCACTGCCTCCTGACATACCGAGCTTCGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
3UTR-3UTR CCA 90 bp CAAGCTGTCAGCAATAATGTCGAAGCTCGGTATGTCAGGAGGCAGTGGTGGTGGTCATGGGTGGATAGGTaGGCTTGGTGGCGATTTCTA +
Preference number: 2 (lower is better)
Translates to: QAVSNNVEARYVRRQWWWSWVDR*AWWRFL
Trigger: TAGAAATCGCCACCAAGCCCACCTATCCACCCATGA...CCACCACCACTGCCTCCTGACATACCGAGCTTCGACATTATTGCTGACAGCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
3UTR CAA 90 bp TGCTGTTTCAGTAGCAGGGTACCCCTGCCTATGCTTCAGAAACCATaGAAACTAGGAAGAGCCAGGGTTGGGCCTCACTTTGGACTTCAG +
Preference number: 2 (lower is better)
Translates to: CCFSSRVPLPMLQKP*KLGRARVGPHFGLQ
Trigger: CTGAAGTCCAAAGTGAGGCCCAACCCTGGCTCTTCCTAGTTTCAATGGTTTCTGAAGCATAGGCAGGGGTACCCTGCTACTGAAACAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR-3UTR GCA 90 bp TCTGGGTCCTCTGTGAAGGCTGCTTGTACCAGGGACTTTGAGGCTCTGGCCCTGCAGTTAATATACATCTaGTTGTGGACTGAGGCAGAT +
Preference number: 2 (lower is better)
Translates to: SGSSVKAACTRDFEALALQLIYI*LWTEAD
Trigger: ATCTGCCTCAGTCCACAAGCAGATGTATATTAACTG...CAGGGCCAGAGCCTCAAAGTCCCTGGTACAAGCAGCCTTCACAGAGGACCCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR-3UTR CCA 90 bp CACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGTATTTATATTCTATAGGGTCAGAGTaGCACGGGGCCCTCAACTCA +
Preference number: 2 (lower is better)
Translates to: HSAWVQEGWQPTHNKYLYSIGSE*HGALNS
Trigger: TGAGTTGAGGGCCCCGTGCCACTCTGACCCTATAGA...ATATAAATACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR-3UTR GCA 90 bp TGCCTCAGTTTCTCAAAAACAAACCGTACTGTGGAACATCGCCTTGCTCAGCCCATGGTAAGCATTTGTTaGCTAGCATGGAGGCAACCC +
Preference number: 2 (lower is better)
Translates to: CLSFSKTNRTVEHRLAQPMVSIC*LAWRQP
Trigger: GGGTTGCCTCCATGCTAGGCAACAAATGCTTACCAT...GGGCTGAGCAAGGCGATGTTCCACAGTACGGTTTGTTTTTGAGAAACTGAGGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR-3UTR CCA 90 bp TCAAAGCAGGCTGGAGACATTCTGGGGACCCATTCGAGCTCTCTCTCTCTCTCCCGTGGTTATGTAGCTTaGTATTTCCCAAATTTGAGA +
Preference number: 2 (lower is better)
Translates to: SKQAGDILGTHSSSLSLSRGYVA*YFPNLR
Trigger: TCTCAAATTTGGGAAATACCAAGCTACATAACCACG...GGAGAGAGAGAGAGAGCTCGAATGGGTCCCCAGAATGTCTCCAGCCTGCTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR-3UTR CCA 90 bp AATAATGTCGAAGCTCGGTATGTCAGGAGGCAGTGGTGGTGGAATTGGGTTCATGATAGGTGGGCTTGGTaGCGATTTCTAAGAGCTTCT +
Preference number: 2 (lower is better)
Translates to: NNVEARYVRRQWWWNWVHDRWAW*RFLRAS
Trigger: AGAAGCTCTTAGAAATCGCCACCAAGCCCACCTATC...ATGAACCCAATTCCACCACCACTGCCTCCTGACATACCGAGCTTCGACATTATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
3UTR CAA 90 bp TTTTCTTTCTCTATCTCCATGGAAAGTCGCTTCATGTCCGTATCCTaGAAGTCAAATGACAAGCTGTCAGCAATAATGTCGAAGCTCGGT +
Preference number: 2 (lower is better)
Translates to: FSFSISMESRFMSVS*KSNDKLSAIMSKLG
Trigger: ACCGAGCTTCGACATTATTGCTGACAGCTTGTCATTTGACTTCAAGGATACGGACATGAAGCGACTTTCCATGGAGATAGAGAAAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
3UTR CAA 90 bp CATAATTTTTATAAACCAGCATCATTGTCTCGTGTCCCACAGCCATaGTTAAATCAAGTGTACAGAGAGGAAGAAAGTCAGAGAGCAGTT +
Preference number: 2 (lower is better)
Translates to: HNFYKPASLSRVPQP*LNQVYREEESQRAV
Trigger: AACTGCTCTCTGACTTTCTTCCTCTCTGTACACTTGATTTAACAATGGCTGTGGGACACGAGACAATGATGCTGGTTTATAAAAATTATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR TCA 72 bp GACAGAGGTCCTGGTCACAGCTGGGTTCCCAGGCACTaGTGGGAATGTGACTGGGAAGCTCCTGGCCCACCA +
Preference number: 3 (lower is better)
Translates to: DRGPGHSWVPRH*WECDWEAPGPP
Trigger: TGGTGGGCCAGGAGCTTCCCAGTCACATTCCCATCAGTGCCTGGGAACCCAGCTGTGACCAGGACCTCTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 72 bp GGGCACTGGCGTGGCCTCAAGGCACCTAGGAGAGTCTaGGTCCTCTGTGAAGGCTGCTTGTACCAGGGACTT +
Preference number: 3 (lower is better)
Translates to: GHWRGLKAPRRV*VLCEGCLYQGL
Trigger: AAGTCCCTGGTACAAGCAGCCTTCACAGAGGACCCAGACTCTCCTAGGTGCCTTGAGGCCACGCCAGTGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR TCA 72 bp CCCGCCCCCTCTCTCTCTCTCTCTCTCTCTCGGAGCTaGGGTACTTCTGAGTGGGGTTTGGACCTCACCTTC +
Preference number: 3 (lower is better)
Translates to: PAPSLSLSLSRS*GTSEWGLDLTF
Trigger: GAAGGTGAGGTCCAAACCCCACTCAGAAGTACCTCAGCTCCGAGAGAGAGAGAGAGAGAGAGAGGGGGCGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR GCA 72 bp TGTCTAGCAGGGGTTGGCAGTGACCTCAGGTCAGAGTaGTGTGGCGGCTCAGGTACTGCCTCAATCAGGGTT +
Preference number: 3 (lower is better)
Translates to: CLAGVGSDLRSE*CGGSGTASIRV
Trigger: AACCCTGATTGAGGCAGTACCTGAGCCGCCACAGCACTCTGACCTGAGGTCACTGCCAACCCCTGCTAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 72 bp CTACTGATGGTTCCTTTTGGGTCAGGCCCATCCTGTTaGTGTCAGGAGCAGCAGATGTGGCAGGAGGTGGCC +
Preference number: 3 (lower is better)
Translates to: LLMVPFGSGPSC*CQEQQMWQEVA
Trigger: GGCCACCTCCTGCCACATCTGCTGCTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACCATCAGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR GCA 72 bp TCAATGTCAGCAAGCACAGCAACCCGTGCACCACAGTaGTTGGGTGCAGGAAGGATGGCAGCCCACACACAA +
Preference number: 3 (lower is better)
Translates to: SMSASTATRAPQ*LGAGRMAAHTQ
Trigger: TTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGGTTGCTGTGCTTGCTGACATTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR GCA 72 bp TACTCCATTTCAGCTTCATCCCTGGCTCTGCCCCGGTaGTCCGCATACCAAGCCGTAATTCTCTCCTCCCAC +
Preference number: 3 (lower is better)
Translates to: YSISASSLALPR*SAYQAVILSSH
Trigger: GTGGGAGGAGAGAATTACGGCTTGGTATGCGGAGCACCGGGGCAGAGCCAGGGATGAAGCTGAAATGGAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124878.3
3UTR GCA 72 bp AGCAAGCACAGCAACCCGTGCACCACAGTGCTTGGGTaGAGGAAGGATGGCAGCCCACACACAACAAGTATT +
Preference number: 3 (lower is better)
Translates to: SKHSNPCTTVLG*RKDGSPHTTSI
Trigger: AATACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGGTTGCTGTGCTTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR GCA 72 bp CCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTaGATGGTAGATTTCAGCCAGCTTTCACACTGGACT +
Preference number: 3 (lower is better)
Translates to: PSQKPSWGVGST*MVDFSQLSHWT
Trigger: AGTCCAGTGTGAAAGCTGGCTGAAATCTACCATGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR GCA 72 bp AGCCTCTTCCTAGCCACAGCTGTCTTGCCTGTTACCTaGCATTCAGACAGCTACACTGCCTCAGGTGAGCCT +
Preference number: 3 (lower is better)
Translates to: SLFLATAVLPVT*HSDSYTASGEP
Trigger: AGGCTCACCTGAGGCAGTGTAGCTGTCTGAATGGCAGGTAACAGGCAAGACAGCTGTGGCTAGGAAGAGGCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 72 bp TCCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTTTaGGTCAGGCCCATCCTGTTGGTGTCAGGAGCAGCA +
Preference number: 3 (lower is better)
Translates to: SQTSQPSTDGSF*VRPILLVSGAA
Trigger: TGCTGCTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACCATCAGTAGAGGGCTGGCTTGTTTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR CCA 72 bp TCACAGGTGCCCAAAGATGCTGAGGTGACCATTGGGTaGCTGCCTATGACAAAGTGGCCCAATAACAGCCCG +
Preference number: 3 (lower is better)
Translates to: SQVPKDAEVTIG*LPMTKWPNNSP
Trigger: CGGGCTGTTATTGGGCCACTTTGTCATAGGCAGCCACCCAATGGTCACCTCAGCATCTTTGGGCACCTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR GCA 72 bp GTTGCAGATGAGCTTGTCCATGCACAGCTCCTTCCATaGGGTAGGGGGACAGAAGCCAAAGTGGCCTTTAGA +
Preference number: 3 (lower is better)
Translates to: VADELVHAQLLP*GRGTEAKVAFR
Trigger: TCTAAAGGCCACTTTGGCTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTGCAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
3UTR GCA 72 bp AGAGCAAGGCCTCAGTGTCCTGCACTGAGAGTGACTTaGTGTTTCAGTAGCAGGGTACCCCTGCCTATGCTT +
Preference number: 3 (lower is better)
Translates to: RARPQCPALRVT*CFSSRVPLPML
Trigger: AAGCATAGGCAGGGGTACCCTGCTACTGAAACAGCAAGTCACTCTCAGTGCAGGACACTGAGGCCTTGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 72 bp GCAGAGGCAGGCATAGTACAGCATTTGAGGCCAGGCTaGCATAGAGAATGCCAGACCAGCCAGAACTACACA +
Preference number: 3 (lower is better)
Translates to: AEAGIVQHLRPG*HRECQTSQNYT
Trigger: TGTGTAGTTCTGGCTGGTCTGGCATTCTCTATGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGCCTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
3UTR CCA 72 bp GGGGGACAGAAGCCAAAGTGGCCTTTAGAGCAGCCATaGGACAGCCAACTCACTGCAACTGGCTTAAAGATG +
Preference number: 3 (lower is better)
Translates to: GGQKPKWPLEQP*DSQLTATGLKM
Trigger: CATCTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTTTGGCTTCTGTCCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
3UTR-3UTR CAA 90 bp CAAGGTGGTGTGCCTCAGTTTCTCAAAAACAAACCGTACTGTGGAACATCGCCTACTTCTACCCCATGCTaGGAGGGGAGGCCCATCCCA +
Preference number: 3 (lower is better)
Translates to: QGGVPQFLKNKPYCGTSPTSTPC*EGRPIP
Trigger: TGGGATGGGCCTCCCCTCCAAGCATGGGGTAGAAGT...AGGCGATGTTCCACAGTACGGTTTGTTTTTGAGAAACTGAGGCACACCACCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR TCA 72 bp TCTCTCTCTCTCTCTCTCTCGGAGCTGAGGTACTTCTaGGTGGGGTTTGGACCTCACCTTCCAAGAAATGGC +
Preference number: 3 (lower is better)
Translates to: SLSLSLSELRYF*VGFGPHLPRNG
Trigger: GCCATTTCTTGGAAGGTGAGGTCCAAACCCCACTCAGAAGTACCTCAGCTCCGAGAGAGAGAGAGAGAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR GCA 72 bp GCCCCTCAGCTCAGCTGTCCTCAGTTAATATACATCTaGTTGTGGACTGAGGCAGATCACCTGCTCTGTAGG +
Preference number: 3 (lower is better)
Translates to: APQLSCPQLIYI*LWTEADHLLCR
Trigger: CCTACAGAGCAGGTGATCTGCCTCAGTCCACAAGCAGATGTATATTAACTGAGGACAGCTGAGCTGAGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 72 bp TGGGGTTTGGACCTCACCTTCCAAGAAATGGCGAAATaGTTACACCCACCATTCCTCAAATACCAGGGCGCC +
Preference number: 3 (lower is better)
Translates to: WGLDLTFQEMAK*LHPPFLKYQGA
Trigger: GGCGCCCTGGTATTTGAGGAATGGTGGGTGTAACCATTTCGCCATTTCTTGGAAGGTGAGGTCCAAACCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 72 bp GTGGAATTGGGTTCATGGGTGGATAGGTGGGCTTGGTaGCGATTTCTAAGAGCTTCTGCTTGGCTCTTCGCT +
Preference number: 3 (lower is better)
Translates to: VELGSWVDRWAW*RFLRASAWLFA
Trigger: AGCGAAGAGCCAAGCAGAAGCTCTTAGAAATCGCCACCAAGCCCACCTATCCACCCATGAACCCAATTCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
3UTR CCA 72 bp GTGGTGGAATTGGGTTCATGGGTGGATAGGTGGGCTTaGTGGCGATTTCTAAGAGCTTCTGCTTGGCTCTTC +
Preference number: 3 (lower is better)
Translates to: VVELGSWVDRWA*WRFLRASAWLF
Trigger: GAAGAGCCAAGCAGAAGCTCTTAGAAATCGCCACCAAGCCCACCTATCCACCCATGAACCCAATTCCACCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
3UTR GCA 72 bp ATAGTACAGCATTTGAGGCCAGGCTGGCATAGAGAATaGCAGACCAGCCAGAACTACACAGCAAGGCCCTAT +
Preference number: 3 (lower is better)
Translates to: IVQHLRPGWHRE*QTSQNYTARPY
Trigger: ATAGGGCCTTGCTGTGTAGTTCTGGCTGGTCTGGCATTCTCTATGCCAGCCTGGCCTCAAATGCTGTACTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
3UTR CCA 72 bp AGCACCTGCATGGTAGATTTCAGCCAGCTTTCACACTaGACTCCCACAGCCGATTCTCAATGTCAGCAAGCA +
Preference number: 3 (lower is better)
Translates to: STCMVDFSQLSH*TPTADSQCQQA
Trigger: TGCTTGCTGACATTGAGAATCGGCTGTGGGAGTCCAGTGTGAAAGCTGGCTGAAATCTACCATGCAGGTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR CCA 72 bp CTCTCTCTCGGAGCTGAGGTACTTCTGAGTGGGGTTTaGACCTCACCTTCCAAGAAATGGCGAAATGGTTAC +
Preference number: 3 (lower is better)
Translates to: LSLGAEVLLSGV*TSPSKKWRNGY
Trigger: GTAACCATTTCGCCATTTCTTGGAAGGTGAGGTCCAAACCCCACTCAGAAGTACCTCAGCTCCGAGAGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 72 bp CTTGTCGCTGTAGGAGATGTTTCGGATTTCATTCCATaGGAAGGAGATCTTGGGGGTCAGCCTGTTCTCAGG +
Preference number: 3 (lower is better)
Translates to: LVAVGDVSDFIP*EGDLGGQPVLR
Trigger: CCTGAGAACAGGCTGACCCCCAAGATCTCCTTCCCATGGAATGAAATCCGAAACATCTCCTACAGCGACAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124878.3
3UTR CCA 72 bp CAACCCGTGCACCACAGTGCTTGGGTGCAGGAAGGATaGCAGCCCACACACAACAAGTATTTATATAAGAGA +
Preference number: 3 (lower is better)
Translates to: QPVHHSAWVQEG*QPTHNKYLYKR
Trigger: TCTCTTATATAAATACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
3UTR CCA 72 bp TGTCTAAAAGAGGATATAGCAGTAAGTGAAGCCCACTaGTGTTGTCTAGCAGGGGTTGGCAGTGACCTCAGG +
Preference number: 3 (lower is better)
Translates to: CLKEDIAVSEAH*CCLAGVGSDLR
Trigger: CCTGAGGTCACTGCCAACCCCTGCTAGACAACACCAGTGGGCTTCACTTACTGCTATATCCTCTTTTAGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR-3UTR CAA 90 bp TCACAGGTGCCCAAAGATGCTGAGGTGACCATTGGGTGGCTGCCTATGACAAAGTTAATATACATCTGCTaGTGGACTGAGGCAGATCAC +
Preference number: 3 (lower is better)
Translates to: SQVPKDAEVTIGWLPMTKLIYIC*WTEADH
Trigger: GTGATCTGCCTCAGTCCACAAGCAGATGTATATTAA...CTTTGTCATAGGCAGCCACCCAATGGTCACCTCAGCATCTTTGGGCACCTGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR GCA 72 bp TTGGGAGATACATCTGTTTCCATAATAGGACAGGCCTaGATACCTGAATTCCCAGTACTTGGGAGGCAGAGG +
Preference number: 3 (lower is better)
Translates to: LGDTSVSIIGQA*IPEFPVLGRQR
Trigger: CCTCTGCCTCCCAAGTACTGGGAATTCAGGTATGCAGGCCTGTCCTATTATGGAAACAGATGTATCTCCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
3UTR GCA 72 bp TCAACACAAATGCTGCTAACTCATCTCCTGGGTGTCTaGAATGGGACAGTTGCAGATGAGCTTGTCCATGCA +
Preference number: 3 (lower is better)
Translates to: STQMLLTHLLGV*NGTVADELVHA
Trigger: TGCATGGACAAGCTCATCTGCAACTGTCCCATTGCAGACACCCAGGAGATGAGTTAGCAGCATTTGTGTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
3UTR CCA 72 bp ATGACAAAGTGGCCCAATAACAGCCCGGGAACAAGGTaGTGTGCCTCAGTTTCTCAAAAACAAACCGTACTG +
Preference number: 3 (lower is better)
Translates to: MTKWPNNSPGTR*CASVSQKQTVL
Trigger: CAGTACGGTTTGTTTTTGAGAAACTGAGGCACACCACCTTGTTCCCGGGCTGTTATTGGGCCACTTTGTCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 72 bp CTTCTGAGTGGGGTTTGGACCTCACCTTCCAAGAAATaGCGAAATGGTTACACCCACCATTCCTCAAATACC +
Preference number: 3 (lower is better)
Translates to: LLSGVWTSPSKK*RNGYTHHSSNT
Trigger: GGTATTTGAGGAATGGTGGGTGTAACCATTTCGCCATTTCTTGGAAGGTGAGGTCCAAACCCCACTCAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR-3UTR CAA 90 bp CCATTGAAACTAGGAAGAGCCAGGGTTGGGCCTCACTTTGGACTTCAGATGTTTCGTGTCCCACAGCCATaGTTAAATCAAGTGTACAGA +
Preference number: 3 (lower is better)
Translates to: PLKLGRARVGPHFGLQMFRVPQP*LNQVYR
Trigger: TCTGTACACTTGATTTAACAATGGCTGTGGGACACG...AAACATCTGAAGTCCAAAGTGAGGCCCAACCCTGGCTCTTCCTAGTTTCAATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR TCA 72 bp ATGAGAAACCTGTCTAAAAGAGGATATAGCAGTAAGTaGAGCCCACTGGTGTTGTCTAGCAGGGGTTGGCAG +
Preference number: 3 (lower is better)
Translates to: MRNLSKRGYSSK*SPLVLSSRGWQ
Trigger: CTGCCAACCCCTGCTAGACAACACCAGTGGGCTTCACTTACTGCTATATCCTCTTTTAGACAGGTTTCTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR GCA 72 bp ATCATGGAGTGTGTGAGGCACATGGTAAGCATTTGTTaGCTAGCATGGAGGCAACCCATAGTGTTAGCTTGT +
Preference number: 3 (lower is better)
Translates to: IMECVRHMVSIC*LAWRQPIVLAC
Trigger: ACAAGCTAACACTATGGGTTGCCTCCATGCTAGGCAACAAATGCTTACCATGTGCCTCACACACTCCATGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 72 bp TGTGTGAGGCACATGGTAAGCATTTGTTGCCTAGCATaGAGGCAACCCATAGTGTTAGCTTGTGTGACTGTT +
Preference number: 3 (lower is better)
Translates to: CVRHMVSICCLA*RQPIVLACVTV
Trigger: AACAGTCACACAAGCTAACACTATGGGTTGCCTCCATGCTAGGCAACAAATGCTTACCATGTGCCTCACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 72 bp TACACCCACCATTCCTCAAATACCAGGGCGCCCACGTaGTTATGTAGCTTGGTATTTCCCAAATTTGAGATA +
Preference number: 3 (lower is better)
Translates to: YTHHSSNTRAPT*LCSLVFPKFEI
Trigger: TATCTCAAATTTGGGAAATACCAAGCTACATAACCACGTGGGCGCCCTGGTATTTGAGGAATGGTGGGTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CCA 72 bp AGATGTTTCGGATTTCATTCCATGGGAAGGAGATCTTaGGGGTCAGCCTGTTCTCAGGGTCATAGATATGAA +
Preference number: 3 (lower is better)
Translates to: RCFGFHSMGRRS*GSACSQGHRYE
Trigger: TTCATATCTATGACCCTGAGAACAGGCTGACCCCCAAGATCTCCTTCCCATGGAATGAAATCCGAAACATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124878.3
3UTR-3UTR CAA 90 bp AATCTAAACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCCTGAATTCCCAGTACTaGGGAGGCAGAGGCAGGCAT +
Preference number: 3 (lower is better)
Translates to: NLNKFGFGRYICFHNRTGLNSQY*GGRGRH
Trigger: ATGCCTGCCTCTGCCTCCCAAGTACTGGGAATTCAG...GCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGTTTAGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
3UTR TCA 72 bp GGAAAGTCGCTTCATGTCCGTATCCTTGAAGTCAAATaGCAAGCTGTCAGCAATAATGTCGAAGCTCGGTAT +
Preference number: 3 (lower is better)
Translates to: GKSLHVRILEVK*QAVSNNVEARY
Trigger: ATACCGAGCTTCGACATTATTGCTGACAGCTTGTCATTTGACTTCAAGGATACGGACATGAAGCGACTTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
CDS-3UTR GCA 90 bp GGAGGGGAGGCCCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTGCATGGGCCTCCAGCACCTTCTaGTCCATCAGGCGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: GGEAHPRSPVGEWVAPAWASSTF*SIRRFS
Trigger: GGAGAAGCGCCTGATGGAGCAGAAGGTGCTGGAGGC...CCATGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGGGCCTCCCCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp CTTGGAGGGGAGGCCCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTGCATTTCAGCTTCATCCCTaGCTCTGCCCCGGTGCTCCG +
Preference number: 4 (lower is better)
Translates to: LGGEAHPRSPVGEWVAPAFQLHP*LCPGAP
Trigger: CGGAGCACCGGGGCAGAGCCAGGGATGAAGCTGAAA...TGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGGGCCTCCCCTCCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp TGGCCGGGTCACCTGCTAGAGTTCTTCAAAGAAGGCCACTCGGGACTTGGCGCTGCCTCCTCCCGCATCTaGTTCTCTCGAGCCAGCCGC +
Preference number: 4 (lower is better)
Translates to: WPGHLLEFFKEGHSGLGAASSRI*FSRASR
Trigger: GCGGCTGGCTCGAGAGAAGCAGATGCGGGAGGAGGC...AGCGCCAAGTCCCGAGTGGCCTTCTTTGAAGAACTCTAGCAGGTGACCCGGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056290.13
CDS-3UTR TCA 90 bp TGGAGGGGAGGCCCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTGCATGTGGCCTCCTCCTCTGTaGTCTGAGCCTTTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: WRGGPSQKPSWGVGSTCMWPPPL*SEPFQP
Trigger: TGGCTGAAAAGGCTCAGATCACAGAGGAGGAGGCCA...CATGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGGGCCTCCCCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp TGGAGGGGAGGCCCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTGCATGTTGAGCTCGTTGAGCTaGTCCTGCAGGTGCTTGCTC +
Preference number: 4 (lower is better)
Translates to: WRGGPSQKPSWGVGSTCMLSSLS*SCRCLL
Trigger: GAGCAAGCACCTGCAGGAGCAGCTCAACGAGCTCAA...CATGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGGGCCTCCCCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp ACCCCCATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCCATGCTTGGGCCTCCTCCCGCATCTaGTTCTCTCGAGCCAGCCGC +
Preference number: 4 (lower is better)
Translates to: TPIAGSELSQSTLLPHAWASSRI*FSRASR
Trigger: GCGGCTGGCTCGAGAGAAGCAGATGCGGGAGGAGGC...CCAAGCATGGGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAATGGGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp CTTGGAGGGGAGGCCCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTGCAGTGGCCTTGATTCGCTaGATCTCTTGCTCAGCCTCT +
Preference number: 4 (lower is better)
Translates to: LGGEAHPRSPVGEWVAPAVALIR*ISCSAS
Trigger: AGAGGCTGAGCAAGAGATGCAGCGAATCAAGGCCAC...TGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGGGCCTCCCCTCCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp CCAAAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACTGCAACTGGCTTAGCCTCCTCCCGCATCTaGTTCTCTCGAGCCAGCCGC +
Preference number: 4 (lower is better)
Translates to: PKWPLEQPWDSQLTATGLASSRI*FSRASR
Trigger: GCGGCTGGCTCGAGAGAAGCAGATGCGGGAGGAGGC...TAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTTTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp CAGTACTTGGGAGGCAGAGGCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCATTTCAGCTTCATCCCTaGCTCTGCCCCGGTGCTCCG +
Preference number: 4 (lower is better)
Translates to: QYLGGRGRHSTAFEARLAFQLHP*LCPGAP
Trigger: CGGAGCACCGGGGCAGAGCCAGGGATGAAGCTGAAA...TGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGCCTCTGCCTCCCAAGTACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp CAGTTGCAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCGGTAGGGGGACAGTTTCAGCTTCATCCCTaGCTCTGCCCCGGTGCTCCG +
Preference number: 4 (lower is better)
Translates to: QLQMSLSMHSSFHAVGGQFQLHP*LCPGAP
Trigger: CGGAGCACCGGGGCAGAGCCAGGGATGAAGCTGAAA...CTGTCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTGCAACTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp TGGAGGGGAGGCCCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTGCATGCAGTGGTGGTGGAATTaGGTTCATGGGTGGATAGGT +
Preference number: 4 (lower is better)
Translates to: WRGGPSQKPSWGVGSTCMQWWWN*VHGWIG
Trigger: ACCTATCCACCCATGAACCCAATTCCACCACCACTG...CATGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGGGCCTCCCCTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp GCAACCCGTGCACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAAAGGAGGCAGTGGTGGTaGAATTGGGTTCATGGGTGG +
Preference number: 4 (lower is better)
Translates to: ATRAPQCLGAGRMAAHTQRRQWW*NWVHGW
Trigger: CCACCCATGAACCCAATTCCACCACCACTGCCTCCT...TTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGGTTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp CAGCAACCCGTGCACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACATTTCATCTCGCAGTTaGACTCCATCTCGGCGTCCA +
Preference number: 4 (lower is better)
Translates to: QQPVHHSAWVQEGWQPTHISSRS*TPSRRP
Trigger: TGGACGCCGAGATGGAGTTCAACTGCGAGATGAAAT...GTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGGTTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp GGAGGGGAGGCCCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTGCATGGCAAGCAGCAACTCTGTaGCCTTTTTATTCCGGATTG +
Preference number: 4 (lower is better)
Translates to: GGEAHPRSPVGEWVAPAWQAATL*PFYSGL
Trigger: CAATCCGGAATAAAAAGGGCACAGAGTTGCTGCTTG...CCATGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGGGCCTCCCCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp CCCGTGCACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGTCTCGAGCCAGCCGCTaGCTTTCCATCTGCTTTCTA +
Preference number: 4 (lower is better)
Translates to: PVHHSAWVQEGWQPTHNKSRASR*LSICFL
Trigger: TAGAAAGCAGATGGAAAGGCAGCGGCTGGCTCGAGA...CTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp CAGCAACCCGTGCACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACATTCGCTGCATCTCTTaGTCAGCCTCTGCAGCCTTT +
Preference number: 4 (lower is better)
Translates to: QQPVHHSAWVQEGWQPTHIRCIS*SASAAF
Trigger: AAAGGCTGCAGAGGCTGAGCAAGAGATGCAGCGAAT...GTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGGTTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp CCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTTTGGGTCAGGCCCATCCTGTGCCTCCAGCACCTTCTaGTCCATCAGGCGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: PKQASPLLMVPFGSGPSCASSTF*SIRRFS
Trigger: GGAGAAGCGCCTGATGGAGCAGAAGGTGCTGGAGGC...ACAGGATGGGCCTGACCCAAAAGGAACCATCAGTAGAGGGCTGGCTTGTTTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp TTGCAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCGGTAGGGGGACAGAAGGCCTCCAGCACCTTCTaGTCCATCAGGCGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: LQMSLSMHSSFHAVGGQKASSTF*SIRRFS
Trigger: GGAGAAGCGCCTGATGGAGCAGAAGGTGCTGGAGGC...CTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTGCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp CAGCAACCCGTGCACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACGGGAGCAATTCCTCTTaGGCTAAAAATCCCCGCTTG +
Preference number: 4 (lower is better)
Translates to: QQPVHHSAWVQEGWQPTHGSNSS*AKNPRL
Trigger: CAAGCGGGGATTTTTAGCCCAAGAGGAATTGCTCCC...GTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGGTTGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp CTTGGAGGGGAGGCCCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTGCAGATAGGTGGGCTTGGTaGCGATTTCTAAGAGCTTCT +
Preference number: 4 (lower is better)
Translates to: LGGEAHPRSPVGEWVAPADRWAW*RFLRAS
Trigger: AGAAGCTCTTAGAAATCGCCACCAAGCCCACCTATC...TGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGGGCCTCCCCTCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp CAGCAGATGTGGCAGGAGGTGGCCGGGTCACCTGCTAGAGTTCTTCAAAGAAGGCCGTCTCCCGCTCTTTaGGTTTCAAGGCCTCGATCT +
Preference number: 4 (lower is better)
Translates to: QQMWQEVAGSPARVLQRRPSPAL*VSRPRS
Trigger: AGATCGAGGCCTTGAAACTCAAAGAGCGGGAGACGG...CCTTCTTTGAAGAACTCTAGCAGGTGACCCGGCCACCTCCTGCCACATCTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056290.13
CDS-3UTR GCA 90 bp GAGCTTGTCCATGCACAGCTCCTTCCATGCGGTAGGGGGACAGAAGCCAAAGTGTTGAGCTCGTTGAGCTaGTCCTGCAGGTGCTTGCTC +
Preference number: 4 (lower is better)
Translates to: ELVHAQLLPCGRGTEAKVLSSLS*SCRCLL
Trigger: GAGCAAGCACCTGCAGGAGCAGCTCAACGAGCTCAA...CACTTTGGCTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp CAGTACTTGGGAGGCAGAGGCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCAACTGATCAGCCTCCTTaGCCCTCCTCTCTGACTCCT +
Preference number: 4 (lower is better)
Translates to: QYLGGRGRHSTAFEARLATDQPP*PSSLTP
Trigger: AGGAGTCAGAGAGGAGGGCCAAGGAGGCTGATCAGT...TGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGCCTCTGCCTCCCAAGTACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp CCCGTGCACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGTCATGGGTGGATAGGTaGGCTTGGTGGCGATTTCTA +
Preference number: 4 (lower is better)
Translates to: PVHHSAWVQEGWQPTHNKSWVDR*AWWRFL
Trigger: TAGAAATCGCCACCAAGCCCACCTATCCACCCATGA...CTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp GGGGGACAGAAGCCAAAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACTGTCAGGAGGCAGTGGTaGTGGAATTGGGTTCATGGG +
Preference number: 4 (lower is better)
Translates to: GGQKPKWPLEQPWDSQLTVRRQW*WNWVHG
Trigger: CCCATGAACCCAATTCCACCACCACTGCCTCCTGAC...AGTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTTTGGCTTCTGTCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
3UTR CAA 72 bp TCCTGGGTGTCTGCAATGGGACAGTTGCAGATGAGCTaGTCCATGCACAGCTCCTTCCATGCGGTAGGGGGA +
Preference number: 4 (lower is better)
Translates to: SWVSAMGQLQMS*SMHSSFHAVGG
Trigger: TCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTGCAACTGTCCCATTGCAGACACCCAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
3UTR CAA 72 bp GCTGCTTGTACCAGGGACTTTGAGGCTCTGGCCCTGTaGGCAGGAACGGTTAGTCACTGTTGCTGGGAGTCA +
Preference number: 4 (lower is better)
Translates to: AACTRDFEALAL*AGTVSHCCWES
Trigger: TGACTCCCAGCAACAGTGACTAACCGTTCCTGCCAACAGGGCCAGAGCCTCAAAGTCCCTGGTACAAGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp CAGTACTTGGGAGGCAGAGGCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCACTGCTTCCTCTTGAGTaGGCTGAAGCTCATGCGAGA +
Preference number: 4 (lower is better)
Translates to: QYLGGRGRHSTAFEARLALLPLE*AEAHAR
Trigger: TCTCGCATGAGCTTCAGCTCACTCAAGAGGAAGCAG...TGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGCCTCTGCCTCCCAAGTACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR TCA 90 bp CTTGTCCATGCACAGCTCCTTCCATGCGGTAGGGGGACAGAAGCCAAAGTGGCCTGTTGCGTGATCTCTTaGACTAGCTCCTCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: LVHAQLLPCGRGTEAKVACCVIS*TSSSSA
Trigger: TGCTGAGGAGGAGCTAGTTCAAGAGATCACGCAACA...GGCCACTTTGGCTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR TCA 90 bp CCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTTTGGGTCAGGCCCATCCTGTTGGCCTCCTCCTCTGTaGTCTGAGCCTTTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: PKQASPLLMVPFGSGPSCWPPPL*SEPFQP
Trigger: TGGCTGAAAAGGCTCAGATCACAGAGGAGGAGGCCA...ACAGGATGGGCCTGACCCAAAAGGAACCATCAGTAGAGGGCTGGCTTGTTTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp TTGCAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCGGTAGGGGGACAGAAGCCGTCTCCCGCTCTTTaGGTTTCAAGGCCTCGATCT +
Preference number: 4 (lower is better)
Translates to: LQMSLSMHSSFHAVGGQKPSPAL*VSRPRS
Trigger: AGATCGAGGCCTTGAAACTCAAAGAGCGGGAGACGG...CTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTGCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR GCA 90 bp CAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCGGTAGGGGGACAGAAGCCAGTGGCCTTGATTCGCTaGATCTCTTGCTCAGCCTCT +
Preference number: 4 (lower is better)
Translates to: QMSLSMHSSFHAVGGQKPVALIR*ISCSAS
Trigger: AGAGGCTGAGCAAGAGATGCAGCGAATCAAGGCCAC...TGGCTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR GCA 90 bp CGTGCACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGTACTCAGCCATCTTCAATaGCAGCACTTCAGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: RAPQCLGAGRMAAHTQQVLSHLQ*QHFSLQ
Trigger: CTGGAGGCTGAAGTGCTGGCATTGAAGATGGCTGAG...TACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp CAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCGGTAGGGGGACAGAAGCCAGCTCCTGCAGGTGCTTaGTCTTCTCCATGTACTCCA +
Preference number: 4 (lower is better)
Translates to: QMSLSMHSSFHAVGGQKPAPAGA*SSPCTP
Trigger: TGGAGTACATGGAGAAGAGCAAGCACCTGCAGGAGC...TGGCTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR GCA 90 bp CGTGCACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGTAGCTCCTGCAGGTGCTTaGTCTTCTCCATGTACTCCA +
Preference number: 4 (lower is better)
Translates to: RAPQCLGAGRMAAHTQQVAPAGA*SSPCTP
Trigger: TGGAGTACATGGAGAAGAGCAAGCACCTGCAGGAGC...TACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp GGTTCCTTTTGGGTCAGGCCCATCCTGTTGGTGTCAGGAGCAGCAGATGTGGCAAGCTGCTCCTGCAGGTaGTTGCTCTTCTCCATGTAC +
Preference number: 4 (lower is better)
Translates to: GSFWVRPILLVSGAADVASCSCR*LLFSMY
Trigger: GTACATGGAGAAGAGCAAGCACCTGCAGGAGCAGCT...TGCCACATCTGCTGCTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp CGTGCACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGTAAGCTGCTCCTGCAGGTaGTTGCTCTTCTCCATGTAC +
Preference number: 4 (lower is better)
Translates to: RAPQCLGAGRMAAHTQQVSCSCR*LLFSMY
Trigger: GTACATGGAGAAGAGCAAGCACCTGCAGGAGCAGCT...TACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp GGTTCCTTTTGGGTCAGGCCCATCCTGTTGGTGTCAGGAGCAGCAGATGTGGCAATGGGAAGGAGATCTTaGGGGTCAGCCTGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: GSFWVRPILLVSGAADVAMGRRS*GSACSQ
Trigger: CTGAGAACAGGCTGACCCCCAAGATCTCCTTCCCAT...TGCCACATCTGCTGCTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp AGCCCTCTACTGATGGTTCCTTTTGGGTCAGGCCCATCCTGTTGGTGTCAGGAGACTGATCAGCCTCCTTaGCCCTCCTCTCTGACTCCT +
Preference number: 4 (lower is better)
Translates to: SPLLMVPFGSGPSCWCQETDQPP*PSSLTP
Trigger: AGGAGTCAGAGAGGAGGGCCAAGGAGGCTGATCAGT...CTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACCATCAGTAGAGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp GCAACCCGTGCACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAATTCGCTCTGCTTCTCTaGCTTCTTGCAAGTCTTGCT +
Preference number: 4 (lower is better)
Translates to: ATRAPQCLGAGRMAAHTQFALLL*LLASLA
Trigger: AGCAAGACTTGCAAGAAGCCAGAGAAGCAGAGCGAA...TTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGGTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp CTTGTCCATGCACAGCTCCTTCCATGCGGTAGGGGGACAGAAGCCAAAGTGGCCTCATGGGTGGATAGGTaGGCTTGGTGGCGATTTCTA +
Preference number: 4 (lower is better)
Translates to: LVHAQLLPCGRGTEAKVASWVDR*AWWRFL
Trigger: TAGAAATCGCCACCAAGCCCACCTATCCACCCATGA...GGCCACTTTGGCTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp AGGGGGACAGAAGCCAAAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACAATTGGGTTCATGGGTaGATAGGTGGGCTTGGTGGC +
Preference number: 4 (lower is better)
Translates to: RGTEAKVAFRAAMGQPTHNWVHG*IGGLGG
Trigger: GCCACCAAGCCCACCTATCCACCCATGAACCCAATT...GTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTTTGGCTTCTGTCCCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp GCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCATAGAGAATGCCAGACCAGCAGGAGGCAGTGGTGGTaGAATTGGGTTCATGGGTGG +
Preference number: 4 (lower is better)
Translates to: AGIVQHLRPGWHRECQTSRRQWW*NWVHGW
Trigger: CCACCCATGAACCCAATTCCACCACCACTGCCTCCT...GCTGGTCTGGCATTCTCTATGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp GTTGCAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCGGTAGGGGGACAGAAAGGAGGCAGTGGTGGTaGAATTGGGTTCATGGGTGG +
Preference number: 4 (lower is better)
Translates to: VADELVHAQLLPCGRGTERRQWW*NWVHGW
Trigger: CCACCCATGAACCCAATTCCACCACCACTGCCTCCT...TTCTGTCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTGCAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp GCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCATAGAGAATGCCAGACCAGCTATTATGCTTGCTGCTaGGGCCGCCTCTGTCTGAGC +
Preference number: 4 (lower is better)
Translates to: AGIVQHLRPGWHRECQTSYYACC*GRLCLS
Trigger: GCTCAGACAGAGGCGGCCCCAGCAGCAAGCATAATA...GCTGGTCTGGCATTCTCTATGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
3UTR CAA 72 bp AGTACTTGGGAGGCAGAGGCAGGCATAGTACAGCATTaGAGGCCAGGCTGGCATAGAGAATGCCAGACCAGC +
Preference number: 4 (lower is better)
Translates to: STWEAEAGIVQH*RPGWHRECQTS
Trigger: GCTGGTCTGGCATTCTCTATGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGCCTCTGCCTCCCAAGTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR TCA 90 bp TGGTTCCTTTTGGGTCAGGCCCATCCTGTTGGTGTCAGGAGCAGCAGATGTGGCAGGCCACCGTGTCCTTaGTTGTATACTGCAGTCCAA +
Preference number: 4 (lower is better)
Translates to: WFLLGQAHPVGVRSSRCGRPPCP*LYTAVQ
Trigger: TTGGACTGCAGTATACAATCAAGGACACGGTGGCCT...GCCACATCTGCTGCTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp AAGCCCAGTTGGGGAGTGGGTAGCACCTGCATGGTAGATTTCAGCCAGCTTTCACCTTCTTGTCCATTTTaGGCCAGGCCACCGTGTCCT +
Preference number: 4 (lower is better)
Translates to: KPSWGVGSTCMVDFSQLSPSCPF*ARPPCP
Trigger: AGGACACGGTGGCCTGGCTCAAAATGGACAAGAAGG...TGAAAGCTGGCTGAAATCTACCATGCAGGTGCTACCCACTCCCCAACTGGGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp CCCGTGCACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGAATTTGGCCAGGAAGTaGAAGGTAACTGGTTCTTCC +
Preference number: 4 (lower is better)
Translates to: PVHHSAWVQEGWQPTHNKNLARK*KVTGSS
Trigger: GGAAGAACCAGTTACCTTTCACTTCCTGGCCAAATT...CTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp GGTTCCTTTTGGGTCAGGCCCATCCTGTTGGTGTCAGGAGCAGCAGATGTGGCATCCTCCTCTGTGATCTaGGCCTTTTCAGCCAACAGA +
Preference number: 4 (lower is better)
Translates to: GSFWVRPILLVSGAADVASSSVI*AFSANR
Trigger: TCTGTTGGCTGAAAAGGCTCAGATCACAGAGGAGGA...TGCCACATCTGCTGCTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp ACCGTACTGTGGAACATCGCCTTGCTCAGCCCCTCAGCTCAGCTGTCCTCAGTTAAGTCTTGCTTTAACTaGTCAGCCTCCTTGGCCCTC +
Preference number: 4 (lower is better)
Translates to: TVLWNIALLSPSAQLSSVKSCFN*SASLAL
Trigger: GAGGGCCAAGGAGGCTGATCAGTTAAAGCAAGACTT...AACTGAGGACAGCTGAGCTGAGGGGCTGAGCAAGGCGATGTTCCACAGTACGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp ACCGTACTGTGGAACATCGCCTTGCTCAGCCCCTCAGCTCAGCTGTCCTCAGTTGTGAATGTCTTGGGCTaGTTCCTCTTGAGTGAGCTG +
Preference number: 4 (lower is better)
Translates to: TVLWNIALLSPSAQLSSVVNVLG*FLLSEL
Trigger: CAGCTCACTCAAGAGGAAGCAGCCCAAGACATTCAC...AACTGAGGACAGCTGAGCTGAGGGGCTGAGCAAGGCGATGTTCCACAGTACGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp CCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTTTGGGTCAGGCCCATCCTGTCTCTGCAGCCTTTTGTaGCAAAAGCTTGGCCTCCTC +
Preference number: 4 (lower is better)
Translates to: PKQASPLLMVPFGSGPSCLCSLL*QKLGLL
Trigger: GAGGAGGCCAAGCTTTTGGCACAAAAGGCTGCAGAG...ACAGGATGGGCCTGACCCAAAAGGAACCATCAGTAGAGGGCTGGCTTGTTTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp CAGTACTTGGGAGGCAGAGGCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCAATTCGCTGCATCTCTTaGTCAGCCTCTGCAGCCTTT +
Preference number: 4 (lower is better)
Translates to: QYLGGRGRHSTAFEARLAIRCIS*SASAAF
Trigger: AAAGGCTGCAGAGGCTGAGCAAGAGATGCAGCGAAT...TGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGCCTCTGCCTCCCAAGTACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR GCA 90 bp AAGCCCAGTTGGGGAGTGGGTAGCACCTGCATGGTAGATTTCAGCCAGCTTTCATTGAGCTCGTTGAGCTaGTCCTGCAGGTGCTTGCTC +
Preference number: 4 (lower is better)
Translates to: KPSWGVGSTCMVDFSQLSLSSLS*SCRCLL
Trigger: GAGCAAGCACCTGCAGGAGCAGCTCAACGAGCTCAA...TGAAAGCTGGCTGAAATCTACCATGCAGGTGCTACCCACTCCCCAACTGGGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp GCCCTCAACTCAAGAGTTCCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTTTTTTCAGCTTCATCCCTaGCTCTGCCCCGGTGCTCCG +
Preference number: 4 (lower is better)
Translates to: ALNSRVPKQASPLLMVPFFQLHP*LCPGAP
Trigger: CGGAGCACCGGGGCAGAGCCAGGGATGAAGCTGAAA...AAAAGGAACCATCAGTAGAGGGCTGGCTTGTTTGGGAACTCTTGAGTTGAGGGC
54% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp ACCCCCATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCCATGCTTGGATGGGAAGGAGATCTTaGGGGTCAGCCTGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: TPIAGSELSQSTLLPHAWMGRRS*GSACSQ
Trigger: CTGAGAACAGGCTGACCCCCAAGATCTCCTTCCCAT...CCAAGCATGGGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAATGGGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp CCAAAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACTGCAACTGGCTTAACTGATCAGCCTCCTTaGCCCTCCTCTCTGACTCCT +
Preference number: 4 (lower is better)
Translates to: PKWPLEQPWDSQLTATGLTDQPP*PSSLTP
Trigger: AGGAGTCAGAGAGGAGGGCCAAGGAGGCTGATCAGT...TAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp CAGTACTTGGGAGGCAGAGGCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCACAGTGGTGGTGGAATTaGGTTCATGGGTGGATAGGT +
Preference number: 4 (lower is better)
Translates to: QYLGGRGRHSTAFEARLAQWWWN*VHGWIG
Trigger: ACCTATCCACCCATGAACCCAATTCCACCACCACTG...TGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGCCTCTGCCTCCCAAGTACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp AAATCCCCAACCCCCATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCTATTATGCTTGCTGCTaGGGCCGCCTCTGTCTGAGC +
Preference number: 4 (lower is better)
Translates to: KSPTPIAGSELSQSTLLPYYACC*GRLCLS
Trigger: GCTCAGACAGAGGCGGCCCCAGCAGCAAGCATAATA...GGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAATGGGGGTTGGGGATTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp AAATCCCCAACCCCCATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCCTGCTTCCTCTTGAGTaGGCTGAAGCTCATGCGAGA +
Preference number: 4 (lower is better)
Translates to: KSPTPIAGSELSQSTLLPLLPLE*AEAHAR
Trigger: TCTCGCATGAGCTTCAGCTCACTCAAGAGGAAGCAG...GGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAATGGGGGTTGGGGATTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp AGGAGAGAGAGAGAGAGGGAGGGAGAGAGAGATATGCAGGTATGCAGGAGGCAACTGCTTCCTCTTGAGTaGGCTGAAGCTCATGCGAGA +
Preference number: 4 (lower is better)
Translates to: RREREREGERDMQVCRRQLLPLE*AEAHAR
Trigger: TCTCGCATGAGCTTCAGCTCACTCAAGAGGAAGCAG...TTGCCTCCTGCATACCTGCATATCTCTCTCTCCCTCCCTCTCTCTCTCTCTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp AGTACTTGGGAGGCAGAGGCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCATTCCTCCTCTGTGATCTaGGCCTTTTCAGCCAACAGA +
Preference number: 4 (lower is better)
Translates to: STWEAEAGIVQHLRPGWHSSSVI*AFSANR
Trigger: TCTGTTGGCTGAAAAGGCTCAGATCACAGAGGAGGA...ATGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGCCTCTGCCTCCCAAGTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR TCA 90 bp GCCATGGGACAGCCAACTCACTGCAACTGGCTTAAAGATGCACCAGTGTTCTGTTGGCCTCCTCCTCTGTaGTCTGAGCCTTTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: AMGQPTHCNWLKDAPVFCWPPPL*SEPFQP
Trigger: TGGCTGAAAAGGCTCAGATCACAGAGGAGGAGGCCA...ACAGAACACTGGTGCATCTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR TCA 90 bp AGAGAGAGGGAGGGAGAGAGAGATATGCAGGTATGCAGGAGGCAAGGAGAACTACCGTCTCCCGCTCTTTaGGTTTCAAGGCCTCGATCT +
Preference number: 4 (lower is better)
Translates to: REREGERDMQVCRRQGELPSPAL*VSRPRS
Trigger: AGATCGAGGCCTTGAAACTCAAAGAGCGGGAGACGG...TAGTTCTCCTTGCCTCCTGCATACCTGCATATCTCTCTCTCCCTCCCTCTCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp CAGAGAGCAGTTTCAGGCCAGAGAACACAGCTCAACTTCAGAGCAGCCAGGGAATCTCGAGCCAGCCGCTaGCTTTCCATCTGCTTTCTA +
Preference number: 4 (lower is better)
Translates to: QRAVSGQRTQLNFRAARESRASR*LSICFL
Trigger: TAGAAAGCAGATGGAAAGGCAGCGGCTGGCTCGAGA...TTCCCTGGCTGCTCTGAAGTTGAGCTGTGTTCTCTGGCCTGAAACTGCTCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp GCAGCCATGGGACAGCCAACTCACTGCAACTGGCTTAAAGATGCACCAGTGTTCCTCTGCAGCCTTTTGTaGCAAAAGCTTGGCCTCCTC +
Preference number: 4 (lower is better)
Translates to: AAMGQPTHCNWLKDAPVFLCSLL*QKLGLL
Trigger: GAGGAGGCCAAGCTTTTGGCACAAAAGGCTGCAGAG...GAACACTGGTGCATCTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR GCA 90 bp CACGGGGCCCTCAACTCAAGAGTTCCCAAACAAGCCAGCCCTCTACTGATGGTTATTCGCTGCATCTCTTaGTCAGCCTCTGCAGCCTTT +
Preference number: 4 (lower is better)
Translates to: HGALNSRVPKQASPLLMVIRCIS*SASAAF
Trigger: AAAGGCTGCAGAGGCTGAGCAAGAGATGCAGCGAAT...AACCATCAGTAGAGGGCTGGCTTGTTTGGGAACTCTTGAGTTGAGGGCCCCGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp CAGAGAGCAGTTTCAGGCCAGAGAACACAGCTCAACTTCAGAGCAGCCAGGGAAGTGGCCTTGATTCGCTaGATCTCTTGCTCAGCCTCT +
Preference number: 4 (lower is better)
Translates to: QRAVSGQRTQLNFRAAREVALIR*ISCSAS
Trigger: AGAGGCTGAGCAAGAGATGCAGCGAATCAAGGCCAC...TTCCCTGGCTGCTCTGAAGTTGAGCTGTGTTCTCTGGCCTGAAACTGCTCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp ATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCCATGCTTGGAGGGGACTCAGCCATCTTCAATaGCAGCACTTCAGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: IAGSELSQSTLLPHAWRGLSHLQ*QHFSLQ
Trigger: CTGGAGGCTGAAGTGCTGGCATTGAAGATGGCTGAG...TCCCCTCCAAGCATGGGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp GCAATGGGACAGTTGCAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCGGTACTCAGCCATCTTCAATaGCAGCACTTCAGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: AMGQLQMSLSMHSSFHAVLSHLQ*QHFSLQ
Trigger: CTGGAGGCTGAAGTGCTGGCATTGAAGATGGCTGAG...TACCGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTGCAACTGTCCCATTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR GCA 90 bp GTCTGCAATGGGACAGTTGCAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCAGCTGCTCCTGCAGGTaGTTGCTCTTCTCCATGTAC +
Preference number: 4 (lower is better)
Translates to: VCNGTVADELVHAQLLPCSCSCR*LLFSMY
Trigger: GTACATGGAGAAGAGCAAGCACCTGCAGGAGCAGCT...GCATGGAAGGAGCTGTGCATGGACAAGCTCATCTGCAACTGTCCCATTGCAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp GCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCATAGAGAATGCCAGACCAGCGGGAGCAATTCCTCTTaGGCTAAAAATCCCCGCTTG +
Preference number: 4 (lower is better)
Translates to: AGIVQHLRPGWHRECQTSGSNSS*AKNPRL
Trigger: CAAGCGGGGATTTTTAGCCCAAGAGGAATTGCTCCC...GCTGGTCTGGCATTCTCTATGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp AGGGGGACAGAAGCCAAAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACTCGGATTTCATTCCATaGGAAGGAGATCTTGGGGGT +
Preference number: 4 (lower is better)
Translates to: RGTEAKVAFRAAMGQPTHSDFIP*EGDLGG
Trigger: ACCCCCAAGATCTCCTTCCCATGGAATGAAATCCGA...GTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTTTGGCTTCTGTCCCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp GGTTCCTTTTGGGTCAGGCCCATCCTGTTGGTGTCAGGAGCAGCAGATGTGGCATCGGATTTCATTCCATaGGAAGGAGATCTTGGGGGT +
Preference number: 4 (lower is better)
Translates to: GSFWVRPILLVSGAADVASDFIP*EGDLGG
Trigger: ACCCCCAAGATCTCCTTCCCATGGAATGAAATCCGA...TGCCACATCTGCTGCTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp GTACAGCATTTGAGGCCAGGCTGGCATAGAGAATGCCAGACCAGCCAGAACTACAATTGGGTTCATGGGTaGATAGGTGGGCTTGGTGGC +
Preference number: 4 (lower is better)
Translates to: VQHLRPGWHRECQTSQNYNWVHG*IGGLGG
Trigger: GCCACCAAGCCCACCTATCCACCCATGAACCCAATT...GTAGTTCTGGCTGGTCTGGCATTCTCTATGCCAGCCTGGCCTCAAATGCTGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp GCAGCCATGGGACAGCCAACTCACTGCAACTGGCTTAAAGATGCACCAGTGTTCGTGGAATTGGGTTCATaGGTGGATAGGTGGGCTTGG +
Preference number: 4 (lower is better)
Translates to: AAMGQPTHCNWLKDAPVFVELGS*VDRWAW
Trigger: CCAAGCCCACCTATCCACCCATGAACCCAATTCCAC...GAACACTGGTGCATCTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp GTTGCAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCGGTAGGGGGACAGAACAGTGGTGGTGGAATTaGGTTCATGGGTGGATAGGT +
Preference number: 4 (lower is better)
Translates to: VADELVHAQLLPCGRGTEQWWWN*VHGWIG
Trigger: ACCTATCCACCCATGAACCCAATTCCACCACCACTG...TTCTGTCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTGCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp AGCCCTCTACTGATGGTTCCTTTTGGGTCAGGCCCATCCTGTTGGTGTCAGGAGCAGTGGTGGTGGAATTaGGTTCATGGGTGGATAGGT +
Preference number: 4 (lower is better)
Translates to: SPLLMVPFGSGPSCWCQEQWWWN*VHGWIG
Trigger: ACCTATCCACCCATGAACCCAATTCCACCACCACTG...CTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACCATCAGTAGAGGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp AACACATTGAGAAACCTCTCTATAGGGTCAGAGTGGCACGGGGCCCTCAACTCAGTCAGGAGGCAGTGGTaGTGGAATTGGGTTCATGGG +
Preference number: 4 (lower is better)
Translates to: NTLRNLSIGSEWHGALNSVRRQW*WNWVHG
Trigger: CCCATGAACCCAATTCCACCACCACTGCCTCCTGAC...TGAGTTGAGGGCCCCGTGCCACTCTGACCCTATAGAGAGGTTTCTCAATGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp GCACAGCTCCTTCCATGCGGTAGGGGGACAGAAGCCAAAGTGGCCTTTAGAGCATATGTCAGGAGGCAGTaGTGGTGGAATTGGGTTCAT +
Preference number: 4 (lower is better)
Translates to: AQLLPCGRGTEAKVAFRAYVRRQ*WWNWVH
Trigger: ATGAACCCAATTCCACCACCACTGCCTCCTGACATA...TGCTCTAAAGGCCACTTTGGCTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp GCCATGGGACAGCCAACTCACTGCAACTGGCTTAAAGATGCACCAGTGTTCTGTTATTATGCTTGCTGCTaGGGCCGCCTCTGTCTGAGC +
Preference number: 4 (lower is better)
Translates to: AMGQPTHCNWLKDAPVFCYYACC*GRLCLS
Trigger: GCTCAGACAGAGGCGGCCCCAGCAGCAAGCATAATA...ACAGAACACTGGTGCATCTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp ACTGGGGTGTCAAGTCCAGAGACCTTCTCCTCAGCCTTAGGTTTCAGACTAGAGTATTATGCTTGCTGCTaGGGCCGCCTCTGTCTGAGC +
Preference number: 4 (lower is better)
Translates to: TGVSSPETFSSALGFRLEYYACC*GRLCLS
Trigger: GCTCAGACAGAGGCGGCCCCAGCAGCAAGCATAATA...CTCTAGTCTGAAACCTAAGGCTGAGGAGAAGGTCTCTGGACTTGACACCCCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CAA 72 bp GCCTCTATCTTAAGCCTCTTCCTAGCCACAGCTGTCTaGCCTGTTACCTGCCATTCAGACAGCTACACTGCC +
Preference number: 4 (lower is better)
Translates to: ASILSLFLATAV*PVTCHSDSYTA
Trigger: GGCAGTGTAGCTGTCTGAATGGCAGGTAACAGGCAAGACAGCTGTGGCTAGGAAGAGGCTTAAGATAGAGGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp AGGGGGACAGAAGCCAAAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACAATTTGGCCAGGAAGTaGAAGGTAACTGGTTCTTCC +
Preference number: 4 (lower is better)
Translates to: RGTEAKVAFRAAMGQPTHNLARK*KVTGSS
Trigger: GGAAGAACCAGTTACCTTTCACTTCCTGGCCAAATT...GTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTTTGGCTTCTGTCCCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR TCA 90 bp AGGGGGACAGAAGCCAAAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACTGGGCTTTCATCTGCTaGACTTCTAAAGAGTCAGCT +
Preference number: 4 (lower is better)
Translates to: RGTEAKVAFRAAMGQPTHWAFIC*TSKESA
Trigger: AGCTGACTCTTTAGAAGTTCAGCAGATGAAAGCCCA...GTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTTTGGCTTCTGTCCCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR TCA 90 bp ACCGTACTGTGGAACATCGCCTTGCTCAGCCCCTCAGCTCAGCTGTCCTCAGTTTGGGCTTTCATCTGCTaGACTTCTAAAGAGTCAGCT +
Preference number: 4 (lower is better)
Translates to: TVLWNIALLSPSAQLSSVWAFIC*TSKESA
Trigger: AGCTGACTCTTTAGAAGTTCAGCAGATGAAAGCCCA...AACTGAGGACAGCTGAGCTGAGGGGCTGAGCAAGGCGATGTTCCACAGTACGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp CCAAAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACTGCAACTGGCTTATCCTCCTCTGTGATCTaGGCCTTTTCAGCCAACAGA +
Preference number: 4 (lower is better)
Translates to: PKWPLEQPWDSQLTATGLSSSVI*AFSANR
Trigger: TCTGTTGGCTGAAAAGGCTCAGATCACAGAGGAGGA...TAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR TCA 90 bp AAATCCCCAACCCCCATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCAAGTCTTGCTTTAACTaGTCAGCCTCCTTGGCCCTC +
Preference number: 4 (lower is better)
Translates to: KSPTPIAGSELSQSTLLPKSCFN*SASLAL
Trigger: GAGGGCCAAGGAGGCTGATCAGTTAAAGCAAGACTT...GGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAATGGGGGTTGGGGATTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp CTTGTCCATGCACAGCTCCTTCCATGCGGTAGGGGGACAGAAGCCAAAGTGGCCCTTCTGCCTTGGGCTTaGGGCTTTTTAATGGTATTA +
Preference number: 4 (lower is better)
Translates to: LVHAQLLPCGRGTEAKVALLPWA*GFLMVL
Trigger: TAATACCATTAAAAAGCCTCAAGCCCAAGGCAGAAG...GGCCACTTTGGCTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR GCA 90 bp ATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCCATGCTTGGAGGGGAGTGAATGTCTTGGGCTaGTTCCTCTTGAGTGAGCTG +
Preference number: 4 (lower is better)
Translates to: IAGSELSQSTLLPHAWRGVNVLG*FLLSEL
Trigger: CAGCTCACTCAAGAGGAAGCAGCCCAAGACATTCAC...TCCCCTCCAAGCATGGGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp ATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCCATGCTTGGAGGGGACTCTTGCTCAGCCTCTaGAGCCTTTTGTGCCAAAAG +
Preference number: 4 (lower is better)
Translates to: IAGSELSQSTLLPHAWRGLLLSL*SLLCQK
Trigger: CTTTTGGCACAAAAGGCTGCAGAGGCTGAGCAAGAG...TCCCCTCCAAGCATGGGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp CCAAAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACTGCAACTGGCTTACTCTTGCTCAGCCTCTaGAGCCTTTTGTGCCAAAAG +
Preference number: 4 (lower is better)
Translates to: PKWPLEQPWDSQLTATGLLLLSL*SLLCQK
Trigger: CTTTTGGCACAAAAGGCTGCAGAGGCTGAGCAAGAG...TAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR GCA 90 bp GCAGCCATGGGACAGCCAACTCACTGCAACTGGCTTAAAGATGCACCAGTGTTCATTCGCTGCATCTCTTaGTCAGCCTCTGCAGCCTTT +
Preference number: 4 (lower is better)
Translates to: AAMGQPTHCNWLKDAPVFIRCIS*SASAAF
Trigger: AAAGGCTGCAGAGGCTGAGCAAGAGATGCAGCGAAT...GAACACTGGTGCATCTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR GCA 90 bp GCACAGCTCCTTCCATGCGGTAGGGGGACAGAAGCCAAAGTGGCCTTTAGAGCATTTTTAATGGTATTATaGTTGCTGCTGGGGCCGCCT +
Preference number: 4 (lower is better)
Translates to: AQLLPCGRGTEAKVAFRAFLMVL*LLLGPP
Trigger: AGGCGGCCCCAGCAGCAAGCATAATACCATTAAAAA...TGCTCTAAAGGCCACTTTGGCTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR GCA 90 bp TGGTTCCTTTTGGGTCAGGCCCATCCTGTTGGTGTCAGGAGCAGCAGATGTGGCTTTTTAATGGTATTATaGTTGCTGCTGGGGCCGCCT +
Preference number: 4 (lower is better)
Translates to: WFLLGQAHPVGVRSSRCGFLMVL*LLLGPP
Trigger: AGGCGGCCCCAGCAGCAAGCATAATACCATTAAAAA...GCCACATCTGCTGCTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp GCAGCCATGGGACAGCCAACTCACTGCAACTGGCTTAAAGATGCACCAGTGTTCGGGAGCAATTCCTCTTaGGCTAAAAATCCCCGCTTG +
Preference number: 4 (lower is better)
Translates to: AAMGQPTHCNWLKDAPVFGSNSS*AKNPRL
Trigger: CAAGCGGGGATTTTTAGCCCAAGAGGAATTGCTCCC...GAACACTGGTGCATCTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp GCCATGGGACAGCCAACTCACTGCAACTGGCTTAAAGATGCACCAGTGTTCTGTATGGGAAGGAGATCTTaGGGGTCAGCCTGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: AMGQPTHCNWLKDAPVFCMGRRS*GSACSQ
Trigger: CTGAGAACAGGCTGACCCCCAAGATCTCCTTCCCAT...ACAGAACACTGGTGCATCTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp GCACAGCTCCTTCCATGCGGTAGGGGGACAGAAGCCAAAGTGGCCTTTAGAGCAGCATCAGAGCTTCATTaGCCATCGTTGCTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: AQLLPCGRGTEAKVAFRAASELH*PSLLLL
Trigger: AAGAAGAAGCAACGATGGCCAATGAAGCTCTGATGC...TGCTCTAAAGGCCACTTTGGCTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp GCCCTCAACTCAAGAGTTCCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTTTACTGATCAGCCTCCTTaGCCCTCCTCTCTGACTCCT +
Preference number: 4 (lower is better)
Translates to: ALNSRVPKQASPLLMVPFTDQPP*PSSLTP
Trigger: AGGAGTCAGAGAGGAGGGCCAAGGAGGCTGATCAGT...AAAAGGAACCATCAGTAGAGGGCTGGCTTGTTTGGGAACTCTTGAGTTGAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp ATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCCATGCTTGGAGGGGATCATGGGTGGATAGGTaGGCTTGGTGGCGATTTCTA +
Preference number: 4 (lower is better)
Translates to: IAGSELSQSTLLPHAWRGSWVDR*AWWRFL
Trigger: TAGAAATCGCCACCAAGCCCACCTATCCACCCATGA...TCCCCTCCAAGCATGGGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp AACACATTGAGAAACCTCTCTATAGGGTCAGAGTGGCACGGGGCCCTCAACTCAAATTGGGTTCATGGGTaGATAGGTGGGCTTGGTGGC +
Preference number: 4 (lower is better)
Translates to: NTLRNLSIGSEWHGALNSNWVHG*IGGLGG
Trigger: GCCACCAAGCCCACCTATCCACCCATGAACCCAATT...TGAGTTGAGGGCCCCGTGCCACTCTGACCCTATAGAGAGGTTTCTCAATGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp TGTCTCCCAACAGCCTCTATCTTAAGCCTCTTCCTAGCCACAGCTGTCTTGCCTAATTGGGTTCATGGGTaGATAGGTGGGCTTGGTGGC +
Preference number: 4 (lower is better)
Translates to: CLPTASILSLFLATAVLPNWVHG*IGGLGG
Trigger: GCCACCAAGCCCACCTATCCACCCATGAACCCAATT...AGGCAAGACAGCTGTGGCTAGGAAGAGGCTTAAGATAGAGGCTGTTGGGAGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp AACACATTGAGAAACCTCTCTATAGGGTCAGAGTGGCACGGGGCCCTCAACTCAGTGGAATTGGGTTCATaGGTGGATAGGTGGGCTTGG +
Preference number: 4 (lower is better)
Translates to: NTLRNLSIGSEWHGALNSVELGS*VDRWAW
Trigger: CCAAGCCCACCTATCCACCCATGAACCCAATTCCAC...TGAGTTGAGGGCCCCGTGCCACTCTGACCCTATAGAGAGGTTTCTCAATGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp CCAATCATGGAGTGTGTGAGGCACATGGTAAGCATTTGTTGCCTAGCATGGAGGAGGAGGCAGTGGTGGTaGAATTGGGTTCATGGGTGG +
Preference number: 4 (lower is better)
Translates to: PIMECVRHMVSICCLAWRRRQWW*NWVHGW
Trigger: CCACCCATGAACCCAATTCCACCACCACTGCCTCCT...CCTCCATGCTAGGCAACAAATGCTTACCATGTGCCTCACACACTCCATGATTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp GCTTCAGAAACCATTGAAACTAGGAAGAGCCAGGGTTGGGCCTCACTTTGGACTGTCAGGAGGCAGTGGTaGTGGAATTGGGTTCATGGG +
Preference number: 4 (lower is better)
Translates to: ASETIETRKSQGWASLWTVRRQW*WNWVHG
Trigger: CCCATGAACCCAATTCCACCACCACTGCCTCCTGAC...AGTCCAAAGTGAGGCCCAACCCTGGCTCTTCCTAGTTTCAATGGTTTCTGAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp AGTACTTGGGAGGCAGAGGCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCATTATGTCAGGAGGCAGTaGTGGTGGAATTGGGTTCAT +
Preference number: 4 (lower is better)
Translates to: STWEAEAGIVQHLRPGWHYVRRQ*WWNWVH
Trigger: ATGAACCCAATTCCACCACCACTGCCTCCTGACATA...ATGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGCCTCTGCCTCCCAAGTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp CAGTACTTGGGAGGCAGAGGCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCACTTTCTCTATCTCCATaGAAAGTCGCTTCATGTCCG +
Preference number: 4 (lower is better)
Translates to: QYLGGRGRHSTAFEARLALSLSP*KVASCP
Trigger: CGGACATGAAGCGACTTTCCATGGAGATAGAGAAAG...TGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGCCTCTGCCTCCCAAGTACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp TGGTTCCTTTTGGGTCAGGCCCATCCTGTTGGTGTCAGGAGCAGCAGATGTGGCCTTTCTCTATCTCCATaGAAAGTCGCTTCATGTCCG +
Preference number: 4 (lower is better)
Translates to: WFLLGQAHPVGVRSSRCGLSLSP*KVASCP
Trigger: CGGACATGAAGCGACTTTCCATGGAGATAGAGAAAG...GCCACATCTGCTGCTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp CCATTGAAACTAGGAAGAGCCAGGGTTGGGCCTCACTTTGGACTTCAGATGTTTCCTTCTTGTCCATTTTaGGCCAGGCCACCGTGTCCT +
Preference number: 4 (lower is better)
Translates to: PLKLGRARVGPHFGLQMFPSCPF*ARPPCP
Trigger: AGGACACGGTGGCCTGGCTCAAAATGGACAAGAAGG...AAACATCTGAAGTCCAAAGTGAGGCCCAACCCTGGCTCTTCCTAGTTTCAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp AACACATTGAGAAACCTCTCTATAGGGTCAGAGTGGCACGGGGCCCTCAACTCATGTTGCGTGATCTCTTaGACTAGCTCCTCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: NTLRNLSIGSEWHGALNSCCVIS*TSSSSA
Trigger: TGCTGAGGAGGAGCTAGTTCAAGAGATCACGCAACA...TGAGTTGAGGGCCCCGTGCCACTCTGACCCTATAGAGAGGTTTCTCAATGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp GGTCCTGAGCTATCTTCAAATACTCCATTTCAGCTTCATCCCTGGCTCTGCCCCTGTTGCGTGATCTCTTaGACTAGCTCCTCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: GPELSSNTPFQLHPWLCPCCVIS*TSSSSA
Trigger: TGCTGAGGAGGAGCTAGTTCAAGAGATCACGCAACA...GGGGCAGAGCCAGGGATGAAGCTGAAATGGAGTATTTGAAGATAGCTCAGGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124878.3
CDS-3UTR TCA 90 bp AAGCTAAGGCAGGCACATGCCTATAATTCCAGCATTAAGGAGGCTGAGACAGGTTGGCCTCCTCCTCTGTaGTCTGAGCCTTTTCAGCCA +
Preference number: 4 (lower is better)
Translates to: KLRQAHAYNSSIKEAETGWPPPL*SEPFQP
Trigger: TGGCTGAAAAGGCTCAGATCACAGAGGAGGAGGCCA...ACCTGTCTCAGCCTCCTTAATGCTGGAATTATAGGCATGTGCCTGCCTTAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR TCA 90 bp AAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACTGCAACTGGCTTAAAGAAGTCTTGCTTTAACTaGTCAGCCTCCTTGGCCCTC +
Preference number: 4 (lower is better)
Translates to: KWPLEQPWDSQLTATGLKKSCFN*SASLAL
Trigger: GAGGGCCAAGGAGGCTGATCAGTTAAAGCAAGACTT...CTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR TCA 90 bp CCCGTGCACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGATCCTTGAAGTCAAATaGCAAGCTGTCAGCAATAAT +
Preference number: 4 (lower is better)
Translates to: PVHHSAWVQEGWQPTHNKILEVK*QAVSNN
Trigger: ATTATTGCTGACAGCTTGTCATTTGACTTCAAGGAT...CTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp ATGTGGCAGGAGGTGGCCGGGTCACCTGCTAGAGTTCTTCAAAGAAGGCCACTCTCATGTCCGTATCCTTaGAGTCAAATGACAAGCTGT +
Preference number: 4 (lower is better)
Translates to: MWQEVAGSPARVLQRRPLSCPYP*SQMTSC
Trigger: ACAGCTTGTCATTTGACTTCAAGGATACGGACATGA...GAGTGGCCTTCTTTGAAGAACTCTAGCAGGTGACCCGGCCACCTCCTGCCACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056290.13
CDS-3UTR GCA 90 bp AAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACTGCAACTGGCTTAAAGCGCTGCCTTTCCATCTaGTTTCTAGCCTTCTCTTCC +
Preference number: 4 (lower is better)
Translates to: KWPLEQPWDSQLTATGLKRCLSI*FLAFSS
Trigger: GGAAGAGAAGGCTAGAAAGCAGATGGAAAGGCAGCG...CTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR GCA 90 bp AGGCAGGCACATGCCTATAATTCCAGCATTAAGGAGGCTGAGACAGGTGCATTCTCTCGAGCCAGCCGCTaGCTTTCCATCTGCTTTCTA +
Preference number: 4 (lower is better)
Translates to: RQAHAYNSSIKEAETGAFSRASR*LSICFL
Trigger: TAGAAAGCAGATGGAAAGGCAGCGGCTGGCTCGAGA...GAATGCACCTGTCTCAGCCTCCTTAATGCTGGAATTATAGGCATGTGCCTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR GCA 90 bp CAAATGCTGCTAACTCATCTCCTGGGTGTCTGCAATGGGACAGTTGCAGATGAGTCTCGAGCCAGCCGCTaGCTTTCCATCTGCTTTCTA +
Preference number: 4 (lower is better)
Translates to: QMLLTHLLGVCNGTVADESRASR*LSICFL
Trigger: TAGAAAGCAGATGGAAAGGCAGCGGCTGGCTCGAGA...CTCATCTGCAACTGTCCCATTGCAGACACCCAGGAGATGAGTTAGCAGCATTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR GCA 90 bp ACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCCTGCATAGCCTCCTCCCGCATCTaGTTCTCTCGAGCCAGCCGC +
Preference number: 4 (lower is better)
Translates to: TSLDLGDTSVSIIGQACIASSRI*FSRASR
Trigger: GCGGCTGGCTCGAGAGAAGCAGATGCGGGAGGAGGC...TATGCAGGCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR GCA 90 bp TCAGCCTTAGGTTTCAGACTAGAGTGCTATCACAGGTGCCCAAAGATGCTGAGGCTCTGCAGCCTTTTGTaGCAAAAGCTTGGCCTCCTC +
Preference number: 4 (lower is better)
Translates to: SALGFRLECYHRCPKMLRLCSLL*QKLGLL
Trigger: GAGGAGGCCAAGCTTTTGGCACAAAAGGCTGCAGAG...CCTCAGCATCTTTGGGCACCTGTGATAGCACTCTAGTCTGAAACCTAAGGCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp AGAGAGAGGGAGGGAGAGAGAGATATGCAGGTATGCAGGAGGCAAGGAGAACTACTCTTGCTCAGCCTCTaGAGCCTTTTGTGCCAAAAG +
Preference number: 4 (lower is better)
Translates to: REREGERDMQVCRRQGELLLLSL*SLLCQK
Trigger: CTTTTGGCACAAAAGGCTGCAGAGGCTGAGCAAGAG...TAGTTCTCCTTGCCTCCTGCATACCTGCATATCTCTCTCTCCCTCCCTCTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp AGGCAGGCACATGCCTATAATTCCAGCATTAAGGAGGCTGAGACAGGTGCATTCCTCAGCCATCTTCAATaGCAGCACTTCAGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: RQAHAYNSSIKEAETGAFLSHLQ*QHFSLQ
Trigger: CTGGAGGCTGAAGTGCTGGCATTGAAGATGGCTGAG...GAATGCACCTGTCTCAGCCTCCTTAATGCTGGAATTATAGGCATGTGCCTGCCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR GCA 90 bp CCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTTTGGGTCAGGCCCATCCTGTATTTCTAAGAGCTTCTaGTTGGCTCTTCGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: PKQASPLLMVPFGSGPSCISKSF*LALRSA
Trigger: AGCAGAGCGAAGAGCCAAGCAGAAGCTCTTAGAAAT...ACAGGATGGGCCTGACCCAAAAGGAACCATCAGTAGAGGGCTGGCTTGTTTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp GCCCTCAACTCAAGAGTTCCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTTTGCTCCTGCAGGTGCTTaGTCTTCTCCATGTACTCCA +
Preference number: 4 (lower is better)
Translates to: ALNSRVPKQASPLLMVPFAPAGA*SSPCTP
Trigger: TGGAGTACATGGAGAAGAGCAAGCACCTGCAGGAGC...AAAAGGAACCATCAGTAGAGGGCTGGCTTGTTTGGGAACTCTTGAGTTGAGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp AGTACTTGGGAGGCAGAGGCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCATTTTTTAATGGTATTATaGTTGCTGCTGGGGCCGCCT +
Preference number: 4 (lower is better)
Translates to: STWEAEAGIVQHLRPGWHFLMVL*LLLGPP
Trigger: AGGCGGCCCCAGCAGCAAGCATAATACCATTAAAAA...ATGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGCCTCTGCCTCCCAAGTACT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR GCA 90 bp AGCCCTCTACTGATGGTTCCTTTTGGGTCAGGCCCATCCTGTTGGTGTCAGGAGTTTTTAATGGTATTATaGTTGCTGCTGGGGCCGCCT +
Preference number: 4 (lower is better)
Translates to: SPLLMVPFGSGPSCWCQEFLMVL*LLLGPP
Trigger: AGGCGGCCCCAGCAGCAAGCATAATACCATTAAAAA...CTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACCATCAGTAGAGGGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp CTGTCAGCAATAATGTCGAAGCTCGGTATGTCAGGAGGCAGTGGTGGTGGAATTATGGGAAGGAGATCTTaGGGGTCAGCCTGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: LSAIMSKLGMSGGSGGGIMGRRS*GSACSQ
Trigger: CTGAGAACAGGCTGACCCCCAAGATCTCCTTCCCAT...AATTCCACCACCACTGCCTCCTGACATACCGAGCTTCGACATTATTGCTGACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
CDS-3UTR CCA 90 bp AATGTCGAAGCTCGGTATGTCAGGAGGCAGTGGTGGTGGAATTGGGTTCATGGGTCGGATTTCATTCCATaGGAAGGAGATCTTGGGGGT +
Preference number: 4 (lower is better)
Translates to: NVEARYVRRQWWWNWVHGSDFIP*EGDLGG
Trigger: ACCCCCAAGATCTCCTTCCCATGGAATGAAATCCGA...CCCATGAACCCAATTCCACCACCACTGCCTCCTGACATACCGAGCTTCGACATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
CDS-3UTR CCA 90 bp GCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCATAGAGAATGCCAGACCAGCGCATCAGAGCTTCATTaGCCATCGTTGCTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: AGIVQHLRPGWHRECQTSASELH*PSLLLL
Trigger: AAGAAGAAGCAACGATGGCCAATGAAGCTCTGATGC...GCTGGTCTGGCATTCTCTATGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp CCAAAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACTGCAACTGGCTTATTCGCTCTGCTTCTCTaGCTTCTTGCAAGTCTTGCT +
Preference number: 4 (lower is better)
Translates to: PKWPLEQPWDSQLTATGLFALLL*LLASLA
Trigger: AGCAAGACTTGCAAGAAGCCAGAGAAGCAGAGCGAA...TAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp TCTGCAATGGGACAGTTGCAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCGGATAGGTGGGCTTGGTaGCGATTTCTAAGAGCTTCT +
Preference number: 4 (lower is better)
Translates to: SAMGQLQMSLSMHSSFHADRWAW*RFLRAS
Trigger: AGAAGCTCTTAGAAATCGCCACCAAGCCCACCTATC...CGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTGCAACTGTCCCATTGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp AAGCCCAGTTGGGGAGTGGGTAGCACCTGCATGGTAGATTTCAGCCAGCTTTCATATGTCAGGAGGCAGTaGTGGTGGAATTGGGTTCAT +
Preference number: 4 (lower is better)
Translates to: KPSWGVGSTCMVDFSQLSYVRRQ*WWNWVH
Trigger: ATGAACCCAATTCCACCACCACTGCCTCCTGACATA...TGAAAGCTGGCTGAAATCTACCATGCAGGTGCTACCCACTCCCCAACTGGGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp AAATCCCCAACCCCCATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCTATGTCAGGAGGCAGTaGTGGTGGAATTGGGTTCAT +
Preference number: 4 (lower is better)
Translates to: KSPTPIAGSELSQSTLLPYVRRQ*WWNWVH
Trigger: ATGAACCCAATTCCACCACCACTGCCTCCTGACATA...GGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAATGGGGGTTGGGGATTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp ATCTTCAAATACTCCATTTCAGCTTCATCCCTGGCTCTGCCCCGGTGCTCCGCAAACACTGCCATTTCTTaGCCTGGACAGCATATGACG +
Preference number: 4 (lower is better)
Translates to: IFKYSISASSLALPRCSANTAIS*PGQHMT
Trigger: CGTCATATGCTGTCCAGGCCAAGAAATGGCAGTGTT...TGCGGAGCACCGGGGCAGAGCCAGGGATGAAGCTGAAATGGAGTATTTGAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124878.3
3UTR CAA 72 bp AGTAGCAGGGTACCCCTGCCTATGCTTCAGAAACCATaGAAACTAGGAAGAGCCAGGGTTGGGCCTCACTTT +
Preference number: 4 (lower is better)
Translates to: SSRVPLPMLQKP*KLGRARVGPHF
Trigger: AAAGTGAGGCCCAACCCTGGCTCTTCCTAGTTTCAATGGTTTCTGAAGCATAGGCAGGGGTACCCTGCTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp AAATCCCCAACCCCCATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCAATTTGGCCAGGAAGTaGAAGGTAACTGGTTCTTCC +
Preference number: 4 (lower is better)
Translates to: KSPTPIAGSELSQSTLLPNLARK*KVTGSS
Trigger: GGAAGAACCAGTTACCTTTCACTTCCTGGCCAAATT...GGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAATGGGGGTTGGGGATTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp AAATCCCCAACCCCCATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCTGGGCTTTCATCTGCTaGACTTCTAAAGAGTCAGCT +
Preference number: 4 (lower is better)
Translates to: KSPTPIAGSELSQSTLLPWAFIC*TSKESA
Trigger: AGCTGACTCTTTAGAAGTTCAGCAGATGAAAGCCCA...GGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAATGGGGGTTGGGGATTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp GGTTCATGGGTGGATAGGTGGGCTTGGTGGCGATTTCTAAGAGCTTCTGCTTGGTGGGCTTTCATCTGCTaGACTTCTAAAGAGTCAGCT +
Preference number: 4 (lower is better)
Translates to: GSWVDRWAWWRFLRASAWWAFIC*TSKESA
Trigger: AGCTGACTCTTTAGAAGTTCAGCAGATGAAAGCCCA...CCAAGCAGAAGCTCTTAGAAATCGCCACCAAGCCCACCTATCCACCCATGAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
CDS-3UTR TCA 90 bp CTCAACTCAAGAGTTCCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTTTGGGTCCTCCTCTGTGATCTaGGCCTTTTCAGCCAACAGA +
Preference number: 4 (lower is better)
Translates to: LNSRVPKQASPLLMVPFGSSSVI*AFSANR
Trigger: TCTGTTGGCTGAAAAGGCTCAGATCACAGAGGAGGA...CCCAAAAGGAACCATCAGTAGAGGGCTGGCTTGTTTGGGAACTCTTGAGTTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp CACGGGGCCCTCAACTCAAGAGTTCCCAAACAAGCCAGCCCTCTACTGATGGTTTCATGTCCGTATCCTTaGAGTCAAATGACAAGCTGT +
Preference number: 4 (lower is better)
Translates to: HGALNSRVPKQASPLLMVSCPYP*SQMTSC
Trigger: ACAGCTTGTCATTTGACTTCAAGGATACGGACATGA...AACCATCAGTAGAGGGCTGGCTTGTTTGGGAACTCTTGAGTTGAGGGCCCCGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp GCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCATAGAGAATGCCAGACCAGCCTTCTGCCTTGGGCTTaGGGCTTTTTAATGGTATTA +
Preference number: 4 (lower is better)
Translates to: AGIVQHLRPGWHRECQTSLLPWA*GFLMVL
Trigger: TAATACCATTAAAAAGCCTCAAGCCCAAGGCAGAAG...GCTGGTCTGGCATTCTCTATGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR GCA 90 bp CTCAACTCAAGAGTTCCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTTTGGGCGCTGCCTTTCCATCTaGTTTCTAGCCTTCTCTTCC +
Preference number: 4 (lower is better)
Translates to: LNSRVPKQASPLLMVPFGRCLSI*FLAFSS
Trigger: GGAAGAGAAGGCTAGAAAGCAGATGGAAAGGCAGCG...CCCAAAAGGAACCATCAGTAGAGGGCTGGCTTGTTTGGGAACTCTTGAGTTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp TCAGCCTTAGGTTTCAGACTAGAGTGCTATCACAGGTGCCCAAAGATGCTGAGGCGCTGCCTTTCCATCTaGTTTCTAGCCTTCTCTTCC +
Preference number: 4 (lower is better)
Translates to: SALGFRLECYHRCPKMLRRCLSI*FLAFSS
Trigger: GGAAGAGAAGGCTAGAAAGCAGATGGAAAGGCAGCG...CCTCAGCATCTTTGGGCACCTGTGATAGCACTCTAGTCTGAAACCTAAGGCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp AGCCCTCTACTGATGGTTCCTTTTGGGTCAGGCCCATCCTGTTGGTGTCAGGAGTTCATTGGCCATCGTTaGTTCTTCTTTCATCTGCAG +
Preference number: 4 (lower is better)
Translates to: SPLLMVPFGSGPSCWCQEFIGHR*FFFHLQ
Trigger: CTGCAGATGAAAGAAGAAGCAACGATGGCCAATGAA...CTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACCATCAGTAGAGGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp CAGAGAGCAGTTTCAGGCCAGAGAACACAGCTCAACTTCAGAGCAGCCAGGGAAATTTCTAAGAGCTTCTaGTTGGCTCTTCGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: QRAVSGQRTQLNFRAAREISKSF*LALRSA
Trigger: AGCAGAGCGAAGAGCCAAGCAGAAGCTCTTAGAAAT...TTCCCTGGCTGCTCTGAAGTTGAGCTGTGTTCTCTGGCCTGAAACTGCTCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp TGGTTCCTTTTGGGTCAGGCCCATCCTGTTGGTGTCAGGAGCAGCAGATGTGGCGAAGTGAAAGGTAACTaGTTCTTCCTTCGAAACATC +
Preference number: 4 (lower is better)
Translates to: WFLLGQAHPVGVRSSRCGEVKGN*FFLRNI
Trigger: GATGTTTCGAAGGAAGAACCAGTTACCTTTCACTTC...GCCACATCTGCTGCTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp TCACAGGTGCCCAAAGATGCTGAGGTGACCATTGGGTGGCTGCCTATGACAAAGGCATCAGAGCTTCATTaGCCATCGTTGCTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: SQVPKDAEVTIGWLPMTKASELH*PSLLLL
Trigger: AAGAAGAAGCAACGATGGCCAATGAAGCTCTGATGC...CTTTGTCATAGGCAGCCACCCAATGGTCACCTCAGCATCTTTGGGCACCTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp AACACATTGAGAAACCTCTCTATAGGGTCAGAGTGGCACGGGGCCCTCAACTCATTCGCTCTGCTTCTCTaGCTTCTTGCAAGTCTTGCT +
Preference number: 4 (lower is better)
Translates to: NTLRNLSIGSEWHGALNSFALLL*LLASLA
Trigger: AGCAAGACTTGCAAGAAGCCAGAGAAGCAGAGCGAA...TGAGTTGAGGGCCCCGTGCCACTCTGACCCTATAGAGAGGTTTCTCAATGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp CACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGTATTTATATGTGGAATTGGGTTCATaGGTGGATAGGTGGGCTTGG +
Preference number: 4 (lower is better)
Translates to: HSAWVQEGWQPTHNKYLYVELGS*VDRWAW
Trigger: CCAAGCCCACCTATCCACCCATGAACCCAATTCCAC...ATATAAATACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp TCTGCAATGGGACAGTTGCAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCGCTTTCTCTATCTCCATaGAAAGTCGCTTCATGTCCG +
Preference number: 4 (lower is better)
Translates to: SAMGQLQMSLSMHSSFHALSLSP*KVASCP
Trigger: CGGACATGAAGCGACTTTCCATGGAGATAGAGAAAG...CGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTGCAACTGTCCCATTGCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
3UTR CAA 72 bp CCCAATCATGGAGTGTGTGAGGCACATGGTAAGCATTaGTTGCCTAGCATGGAGGCAACCCATAGTGTTAGC +
Preference number: 4 (lower is better)
Translates to: PNHGVCEAHGKH*LPSMEATHSVS
Trigger: GCTAACACTATGGGTTGCCTCCATGCTAGGCAACAAATGCTTACCATGTGCCTCACACACTCCATGATTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
3UTR CAA 72 bp CCTCAGCTCAGCTGTCCTCAGTTAATATACATCTGCTaGTGGACTGAGGCAGATCACCTGCTCTGTAGGACT +
Preference number: 4 (lower is better)
Translates to: PQLSCPQLIYIC*WTEADHLLCRT
Trigger: AGTCCTACAGAGCAGGTGATCTGCCTCAGTCCACAAGCAGATGTATATTAACTGAGGACAGCTGAGCTGAGG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp AAGCTAAGGCAGGCACATGCCTATAATTCCAGCATTAAGGAGGCTGAGACAGGTATTTCATCTCGCAGTTaGACTCCATCTCGGCGTCCA +
Preference number: 4 (lower is better)
Translates to: KLRQAHAYNSSIKEAETGISSRS*TPSRRP
Trigger: TGGACGCCGAGATGGAGTTCAACTGCGAGATGAAAT...ACCTGTCTCAGCCTCCTTAATGCTGGAATTATAGGCATGTGCCTGCCTTAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR TCA 90 bp CAAGGTGGTGTGCCTCAGTTTCTCAAAAACAAACCGTACTGTGGAACATCGCCTAGGCCACCGTGTCCTTaGTTGTATACTGCAGTCCAA +
Preference number: 4 (lower is better)
Translates to: QGGVPQFLKNKPYCGTSPRPPCP*LYTAVQ
Trigger: TTGGACTGCAGTATACAATCAAGGACACGGTGGCCT...AGGCGATGTTCCACAGTACGGTTTGTTTTTGAGAAACTGAGGCACACCACCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp AGGAGATCTTGGGGGTCAGCCTGTTCTCAGGGTCATAGATATGAAGCCCAAGAGAATTTGGCCAGGAAGTaGAAGGTAACTGGTTCTTCC +
Preference number: 4 (lower is better)
Translates to: RRSWGSACSQGHRYEAQENLARK*KVTGSS
Trigger: GGAAGAACCAGTTACCTTTCACTTCCTGGCCAAATT...CTCTTGGGCTTCATATCTATGACCCTGAGAACAGGCTGACCCCCAAGATCTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124878.3
CDS-3UTR TCA 90 bp AAGCTAAGGCAGGCACATGCCTATAATTCCAGCATTAAGGAGGCTGAGACAGGTTGTTGCGTGATCTCTTaGACTAGCTCCTCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: KLRQAHAYNSSIKEAETGCCVIS*TSSSSA
Trigger: TGCTGAGGAGGAGCTAGTTCAAGAGATCACGCAACA...ACCTGTCTCAGCCTCCTTAATGCTGGAATTATAGGCATGTGCCTGCCTTAGCTT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR TCA 90 bp CACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGTATTTATATTGTTGCGTGATCTCTTaGACTAGCTCCTCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: HSAWVQEGWQPTHNKYLYCCVIS*TSSSSA
Trigger: TGCTGAGGAGGAGCTAGTTCAAGAGATCACGCAACA...ATATAAATACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp AAATCCCCAACCCCCATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCCTTCTGCCTTGGGCTTaGGGCTTTTTAATGGTATTA +
Preference number: 4 (lower is better)
Translates to: KSPTPIAGSELSQSTLLPLLPWA*GFLMVL
Trigger: TAATACCATTAAAAAGCCTCAAGCCCAAGGCAGAAG...GGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAATGGGGGTTGGGGATTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000056290.13
CDS-3UTR GCA 90 bp TCTGCAATGGGACAGTTGCAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCGTTCATTGGCCATCGTTaGTTCTTCTTTCATCTGCAG +
Preference number: 4 (lower is better)
Translates to: SAMGQLQMSLSMHSSFHAFIGHR*FFFHLQ
Trigger: CTGCAGATGAAAGAAGAAGCAACGATGGCCAATGAA...CGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTGCAACTGTCCCATTGCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR GCA 90 bp ACCAGCCAGAACTACACAGCAAGGCCCTATTTTAAATACCAAACCAAACAAATGGCCTCCAGCACCTTCTaGTCCATCAGGCGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: TSQNYTARPYFKYQTKQMASSTF*SIRRFS
Trigger: GGAGAAGCGCCTGATGGAGCAGAAGGTGCTGGAGGC...CATTTGTTTGGTTTGGTATTTAAAATAGGGCCTTGCTGTGTAGTTCTGGCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR GCA 90 bp GAATGCCAGACCAGCCAGAACTACACAGCAAGGCCCTATTTTAAATACCAAACCAGCTGCTCCTGCAGGTaGTTGCTCTTCTCCATGTAC +
Preference number: 4 (lower is better)
Translates to: ECQTSQNYTARPYFKYQTSCSCR*LLFSMY
Trigger: GTACATGGAGAAGAGCAAGCACCTGCAGGAGCAGCT...GGTTTGGTATTTAAAATAGGGCCTTGCTGTGTAGTTCTGGCTGGTCTGGCATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp CACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGTATTTATATGGGAGCAATTCCTCTTaGGCTAAAAATCCCCGCTTG +
Preference number: 4 (lower is better)
Translates to: HSAWVQEGWQPTHNKYLYGSNSS*AKNPRL
Trigger: CAAGCGGGGATTTTTAGCCCAAGAGGAATTGCTCCC...ATATAAATACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp ACTGGGGTGTCAAGTCCAGAGACCTTCTCCTCAGCCTTAGGTTTCAGACTAGAGCTTTCTCTATCTCCATaGAAAGTCGCTTCATGTCCG +
Preference number: 4 (lower is better)
Translates to: TGVSSPETFSSALGFRLELSLSP*KVASCP
Trigger: CGGACATGAAGCGACTTTCCATGGAGATAGAGAAAG...CTCTAGTCTGAAACCTAAGGCTGAGGAGAAGGTCTCTGGACTTGACACCCCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp AAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACTGCAACTGGCTTAAAGTCATGTCCGTATCCTTaGAGTCAAATGACAAGCTGT +
Preference number: 4 (lower is better)
Translates to: KWPLEQPWDSQLTATGLKSCPYP*SQMTSC
Trigger: ACAGCTTGTCATTTGACTTCAAGGATACGGACATGA...CTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR GCA 90 bp GAATGCCAGACCAGCCAGAACTACACAGCAAGGCCCTATTTTAAATACCAAACCGTGAATGTCTTGGGCTaGTTCCTCTTGAGTGAGCTG +
Preference number: 4 (lower is better)
Translates to: ECQTSQNYTARPYFKYQTVNVLG*FLLSEL
Trigger: CAGCTCACTCAAGAGGAAGCAGCCCAAGACATTCAC...GGTTTGGTATTTAAAATAGGGCCTTGCTGTGTAGTTCTGGCTGGTCTGGCATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR GCA 90 bp ACTGGGGTGTCAAGTCCAGAGACCTTCTCCTCAGCCTTAGGTTTCAGACTAGAGTTCATTGGCCATCGTTaGTTCTTCTTTCATCTGCAG +
Preference number: 4 (lower is better)
Translates to: TGVSSPETFSSALGFRLEFIGHR*FFFHLQ
Trigger: CTGCAGATGAAAGAAGAAGCAACGATGGCCAATGAA...CTCTAGTCTGAAACCTAAGGCTGAGGAGAAGGTCTCTGGACTTGACACCCCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp GGCAGGCACATGCCTATAATTCCAGCATTAAGGAGGCTGAGACAGGTGCATTCTATTTCTAAGAGCTTCTaGTTGGCTCTTCGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: GRHMPIIPALRRLRQVHSISKSF*LALRSA
Trigger: AGCAGAGCGAAGAGCCAAGCAGAAGCTCTTAGAAAT...AGAATGCACCTGTCTCAGCCTCCTTAATGCTGGAATTATAGGCATGTGCCTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp AAGCTAAGGCAGGCACATGCCTATAATTCCAGCATTAAGGAGGCTGAGACAGGTTCGGATTTCATTCCATaGGAAGGAGATCTTGGGGGT +
Preference number: 4 (lower is better)
Translates to: KLRQAHAYNSSIKEAETGSDFIP*EGDLGG
Trigger: ACCCCCAAGATCTCCTTCCCATGGAATGAAATCCGA...ACCTGTCTCAGCCTCCTTAATGCTGGAATTATAGGCATGTGCCTGCCTTAGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp CACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGTATTTATATTCGGATTTCATTCCATaGGAAGGAGATCTTGGGGGT +
Preference number: 4 (lower is better)
Translates to: HSAWVQEGWQPTHNKYLYSDFIP*EGDLGG
Trigger: ACCCCCAAGATCTCCTTCCCATGGAATGAAATCCGA...ATATAAATACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp GCCCTCAACTCAAGAGTTCCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTTTGCATCAGAGCTTCATTaGCCATCGTTGCTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: ALNSRVPKQASPLLMVPFASELH*PSLLLL
Trigger: AAGAAGAAGCAACGATGGCCAATGAAGCTCTGATGC...AAAAGGAACCATCAGTAGAGGGCTGGCTTGTTTGGGAACTCTTGAGTTGAGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp ACCAGCCAGAACTACACAGCAAGGCCCTATTTTAAATACCAAACCAAACAAATGCCTTCTTGTCCATTTTaGGCCAGGCCACCGTGTCCT +
Preference number: 4 (lower is better)
Translates to: TSQNYTARPYFKYQTKQMPSCPF*ARPPCP
Trigger: AGGACACGGTGGCCTGGCTCAAAATGGACAAGAAGG...CATTTGTTTGGTTTGGTATTTAAAATAGGGCCTTGCTGTGTAGTTCTGGCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR TCA 90 bp TCTGCAATGGGACAGTTGCAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCGATCCTTGAAGTCAAATaGCAAGCTGTCAGCAATAAT +
Preference number: 4 (lower is better)
Translates to: SAMGQLQMSLSMHSSFHAILEVK*QAVSNN
Trigger: ATTATTGCTGACAGCTTGTCATTTGACTTCAAGGAT...CGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTGCAACTGTCCCATTGCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR TCA 90 bp ACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCCTGCATACCGTCTCCCGCTCTTTaGGTTTCAAGGCCTCGATCT +
Preference number: 4 (lower is better)
Translates to: TSLDLGDTSVSIIGQACIPSPAL*VSRPRS
Trigger: AGATCGAGGCCTTGAAACTCAAAGAGCGGGAGACGG...TATGCAGGCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR GCA 90 bp ACCAGCCAGAACTACACAGCAAGGCCCTATTTTAAATACCAAACCAAACAAATGTTGAGCTCGTTGAGCTaGTCCTGCAGGTGCTTGCTC +
Preference number: 4 (lower is better)
Translates to: TSQNYTARPYFKYQTKQMLSSLS*SCRCLL
Trigger: GAGCAAGCACCTGCAGGAGCAGCTCAACGAGCTCAA...CATTTGTTTGGTTTGGTATTTAAAATAGGGCCTTGCTGTGTAGTTCTGGCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp AAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACTGCAACTGGCTTAAAGGAAGTGAAAGGTAACTaGTTCTTCCTTCGAAACATC +
Preference number: 4 (lower is better)
Translates to: KWPLEQPWDSQLTATGLKEVKGN*FFLRNI
Trigger: GATGTTTCGAAGGAAGAACCAGTTACCTTTCACTTC...CTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp TTGGACCTCACCTTCCAAGAAATGGCGAAATGGTTACACCCACCATTCCTCAAAGATAGGTGGGCTTGGTaGCGATTTCTAAGAGCTTCT +
Preference number: 4 (lower is better)
Translates to: LDLTFQEMAKWLHPPFLKDRWAW*RFLRAS
Trigger: AGAAGCTCTTAGAAATCGCCACCAAGCCCACCTATC...TTTGAGGAATGGTGGGTGTAACCATTTCGCCATTTCTTGGAAGGTGAGGTCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp ACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCCTGCATAGTCAGGAGGCAGTGGTaGTGGAATTGGGTTCATGGG +
Preference number: 4 (lower is better)
Translates to: TSLDLGDTSVSIIGQACIVRRQW*WNWVHG
Trigger: CCCATGAACCCAATTCCACCACCACTGCCTCCTGAC...TATGCAGGCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
3UTR CAA 72 bp AATCATGGAGTGTGTGAGGCACATGGTAAGCATTTGTaGCCTAGCATGGAGGCAACCCATAGTGTTAGCTTG +
Preference number: 4 (lower is better)
Translates to: NHGVCEAHGKHL*PSMEATHSVSL
Trigger: CAAGCTAACACTATGGGTTGCCTCCATGCTAGGCAACAAATGCTTACCATGTGCCTCACACACTCCATGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp TTAGTTGACTCAACACAAATGCTGCTAACTCATCTCCTGGGTGTCTGCAATGGGATTTCTAAGAGCTTCTaGTTGGCTCTTCGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: LVDSTQMLLTHLLGVCNGISKSF*LALRSA
Trigger: AGCAGAGCGAAGAGCCAAGCAGAAGCTCTTAGAAAT...CCCATTGCAGACACCCAGGAGATGAGTTAGCAGCATTTGTGTTGAGTCAACTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CCA 90 bp GCTTCAGAAACCATTGAAACTAGGAAGAGCCAGGGTTGGGCCTCACTTTGGACTGAAGTGAAAGGTAACTaGTTCTTCCTTCGAAACATC +
Preference number: 4 (lower is better)
Translates to: ASETIETRKSQGWASLWTEVKGN*FFLRNI
Trigger: GATGTTTCGAAGGAAGAACCAGTTACCTTTCACTTC...AGTCCAAAGTGAGGCCCAACCCTGGCTCTTCCTAGTTTCAATGGTTTCTGAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR CCA 90 bp AGCCCAAGAGCATCCACTCCAAGCAGCAACTCTGTGCCCTTTTTATTCCGGATTGAAGTGAAAGGTAACTaGTTCTTCCTTCGAAACATC +
Preference number: 4 (lower is better)
Translates to: SPRASTPSSNSVPFLFRIEVKGN*FFLRNI
Trigger: GATGTTTCGAAGGAAGAACCAGTTACCTTTCACTTC...AATCCGGAATAAAAAGGGCACAGAGTTGCTGCTTGGAGTGGATGCTCTTGGGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124878.3
CDS-3UTR GCA 90 bp ACCAGCCAGAACTACACAGCAAGGCCCTATTTTAAATACCAAACCAAACAAATGCTCTTGCTCAGCCTCTaGAGCCTTTTGTGCCAAAAG +
Preference number: 4 (lower is better)
Translates to: TSQNYTARPYFKYQTKQMLLLSL*SLLCQK
Trigger: CTTTTGGCACAAAAGGCTGCAGAGGCTGAGCAAGAG...CATTTGTTTGGTTTGGTATTTAAAATAGGGCCTTGCTGTGTAGTTCTGGCTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR GCA 90 bp ATAATTCCAGCATTAAGGAGGCTGAGACAGGTGCATTCTAAATTGTTCATCCAAGTGGCCTTGATTCGCTaGATCTCTTGCTCAGCCTCT +
Preference number: 4 (lower is better)
Translates to: IIPALRRLRQVHSKLFIQVALIR*ISCSAS
Trigger: AGAGGCTGAGCAAGAGATGCAGCGAATCAAGGCCAC...TTGGATGAACAATTTAGAATGCACCTGTCTCAGCCTCCTTAATGCTGGAATTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR GCA 90 bp ATAATTCCAGCATTAAGGAGGCTGAGACAGGTGCATTCTAAATTGTTCATCCAAGCTCCTGCAGGTGCTTaGTCTTCTCCATGTACTCCA +
Preference number: 4 (lower is better)
Translates to: IIPALRRLRQVHSKLFIQAPAGA*SSPCTP
Trigger: TGGAGTACATGGAGAAGAGCAAGCACCTGCAGGAGC...TTGGATGAACAATTTAGAATGCACCTGTCTCAGCCTCCTTAATGCTGGAATTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp ATAATTCCAGCATTAAGGAGGCTGAGACAGGTGCATTCTAAATTGTTCATCCAAATGGGAAGGAGATCTTaGGGGTCAGCCTGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: IIPALRRLRQVHSKLFIQMGRRS*GSACSQ
Trigger: CTGAGAACAGGCTGACCCCCAAGATCTCCTTCCCAT...TTGGATGAACAATTTAGAATGCACCTGTCTCAGCCTCCTTAATGCTGGAATTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp ACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCCTGCATATCATGGGTGGATAGGTaGGCTTGGTGGCGATTTCTA +
Preference number: 4 (lower is better)
Translates to: TSLDLGDTSVSIIGQACISWVDR*AWWRFL
Trigger: TAGAAATCGCCACCAAGCCCACCTATCCACCCATGA...TATGCAGGCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR TCA 90 bp ATAATTCCAGCATTAAGGAGGCTGAGACAGGTGCATTCTAAATTGTTCATCCAAAAGTCTTGCTTTAACTaGTCAGCCTCCTTGGCCCTC +
Preference number: 4 (lower is better)
Translates to: IIPALRRLRQVHSKLFIQKSCFN*SASLAL
Trigger: GAGGGCCAAGGAGGCTGATCAGTTAAAGCAAGACTT...TTGGATGAACAATTTAGAATGCACCTGTCTCAGCCTCCTTAATGCTGGAATTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR TCA 90 bp CACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGTATTTATATATCCTTGAAGTCAAATaGCAAGCTGTCAGCAATAAT +
Preference number: 4 (lower is better)
Translates to: HSAWVQEGWQPTHNKYLYILEVK*QAVSNN
Trigger: ATTATTGCTGACAGCTTGTCATTTGACTTCAAGGAT...ATATAAATACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR GCA 90 bp AATCTAAACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCCTCTGCAGCCTTTTGTaGCAAAAGCTTGGCCTCCTC +
Preference number: 4 (lower is better)
Translates to: NLNKFGFGRYICFHNRTGLCSLL*QKLGLL
Trigger: GAGGAGGCCAAGCTTTTGGCACAAAAGGCTGCAGAG...GCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGTTTAGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp ACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCCTGCATATTCGCTCTGCTTCTCTaGCTTCTTGCAAGTCTTGCT +
Preference number: 4 (lower is better)
Translates to: TSLDLGDTSVSIIGQACIFALLL*LLASLA
Trigger: AGCAAGACTTGCAAGAAGCCAGAGAAGCAGAGCGAA...TATGCAGGCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp AATCTAAACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCGTGGAATTGGGTTCATaGGTGGATAGGTGGGCTTGG +
Preference number: 4 (lower is better)
Translates to: NLNKFGFGRYICFHNRTGVELGS*VDRWAW
Trigger: CCAAGCCCACCTATCCACCCATGAACCCAATTCCAC...GCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGTTTAGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
3UTR CAA 72 bp TCTATCTCCATGGAAAGTCGCTTCATGTCCGTATCCTaGAAGTCAAATGACAAGCTGTCAGCAATAATGTCG +
Preference number: 4 (lower is better)
Translates to: SISMESRFMSVS*KSNDKLSAIMS
Trigger: CGACATTATTGCTGACAGCTTGTCATTTGACTTCAAGGATACGGACATGAAGCGACTTTCCATGGAGATAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
CDS-3UTR TCA 90 bp AATCTAAACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCAGGCCACCGTGTCCTTaGTTGTATACTGCAGTCCAA +
Preference number: 4 (lower is better)
Translates to: NLNKFGFGRYICFHNRTGRPPCP*LYTAVQ
Trigger: TTGGACTGCAGTATACAATCAAGGACACGGTGGCCT...GCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGTTTAGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR TCA 90 bp ACCAGCCAGAACTACACAGCAAGGCCCTATTTTAAATACCAAACCAAACAAATGTGGGCTTTCATCTGCTaGACTTCTAAAGAGTCAGCT +
Preference number: 4 (lower is better)
Translates to: TSQNYTARPYFKYQTKQMWAFIC*TSKESA
Trigger: AGCTGACTCTTTAGAAGTTCAGCAGATGAAAGCCCA...CATTTGTTTGGTTTGGTATTTAAAATAGGGCCTTGCTGTGTAGTTCTGGCTGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR GCA 90 bp ACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCCTGCATACAAGCAGCAACTCTGTaGCCTTTTTATTCCGGATTG +
Preference number: 4 (lower is better)
Translates to: TSLDLGDTSVSIIGQACIQAATL*PFYSGL
Trigger: CAATCCGGAATAAAAAGGGCACAGAGTTGCTGCTTG...TATGCAGGCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR GCA 90 bp AATCTAAACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCCGCTGCCTTTCCATCTaGTTTCTAGCCTTCTCTTCC +
Preference number: 4 (lower is better)
Translates to: NLNKFGFGRYICFHNRTGRCLSI*FLAFSS
Trigger: GGAAGAGAAGGCTAGAAAGCAGATGGAAAGGCAGCG...GCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGTTTAGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
3UTR CAA 72 bp AGGAAGGCCTGGCATAATTTTTATAAACCAGCATCATaGTCTCGTGTCCCACAGCCATTGTTAAATCAAGTG +
Preference number: 4 (lower is better)
Translates to: RKAWHNFYKPAS*SRVPQPLLNQV
Trigger: CACTTGATTTAACAATGGCTGTGGGACACGAGACAATGATGCTGGTTTATAAAAATTATGCCAGGCCTTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR TCA 90 bp ATAATTCCAGCATTAAGGAGGCTGAGACAGGTGCATTCTAAATTGTTCATCCAAAATTTGGCCAGGAAGTaGAAGGTAACTGGTTCTTCC +
Preference number: 4 (lower is better)
Translates to: IIPALRRLRQVHSKLFIQNLARK*KVTGSS
Trigger: GGAAGAACCAGTTACCTTTCACTTCCTGGCCAAATT...TTGGATGAACAATTTAGAATGCACCTGTCTCAGCCTCCTTAATGCTGGAATTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp AATCTAAACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCGATAGGTGGGCTTGGTaGCGATTTCTAAGAGCTTCT +
Preference number: 4 (lower is better)
Translates to: NLNKFGFGRYICFHNRTGDRWAW*RFLRAS
Trigger: AGAAGCTCTTAGAAATCGCCACCAAGCCCACCTATC...GCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGTTTAGATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CCA 90 bp ACCAGCCAGAACTACACAGCAAGGCCCTATTTTAAATACCAAACCAAACAAATGGAAGTGAAAGGTAACTaGTTCTTCCTTCGAAACATC +
Preference number: 4 (lower is better)
Translates to: TSQNYTARPYFKYQTKQMEVKGN*FFLRNI
Trigger: GATGTTTCGAAGGAAGAACCAGTTACCTTTCACTTC...CATTTGTTTGGTTTGGTATTTAAAATAGGGCCTTGCTGTGTAGTTCTGGCTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR TCA 90 bp ACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCCTGCATAATCCTTGAAGTCAAATaGCAAGCTGTCAGCAATAAT +
Preference number: 4 (lower is better)
Translates to: TSLDLGDTSVSIIGQACIILEVK*QAVSNN
Trigger: ATTATTGCTGACAGCTTGTCATTTGACTTCAAGGAT...TATGCAGGCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR TCA 90 bp AATCTAAACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCTCATGTCCGTATCCTTaGAGTCAAATGACAAGCTGT +
Preference number: 4 (lower is better)
Translates to: NLNKFGFGRYICFHNRTGSCPYP*SQMTSC
Trigger: ACAGCTTGTCATTTGACTTCAAGGATACGGACATGA...GCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGTTTAGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR GCA 90 bp AATCTAAACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCTTCATTGGCCATCGTTaGTTCTTCTTTCATCTGCAG +
Preference number: 4 (lower is better)
Translates to: NLNKFGFGRYICFHNRTGFIGHR*FFFHLQ
Trigger: CTGCAGATGAAAGAAGAAGCAACGATGGCCAATGAA...GCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGTTTAGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CAA 90 bp GGAGGGGAGGCCCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTGCATGGCATGGGAAGGAGATCTaGGGGGTCAGCCTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: GGEAHPRSPVGEWVAPAWHGKEI*GVSLFS
Trigger: TGAGAACAGGCTGACCCCCAAGATCTCCTTCCCATG...CCATGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGGGCCTCCCCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp GGAGGGGAGGCCCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTGCATGGTCTCTAACTCATCTCTaGTACGCTCGGCCTCCTCCC +
Preference number: 5 (lower is better)
Translates to: GGEAHPRSPVGEWVAPAWSLTHL*YARPPP
Trigger: GGGAGGAGGCCGAGCGTACAAGAGATGAGTTAGAGA...CCATGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGGGCCTCCCCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp CTTGGAGGGGAGGCCCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTGCACGCACCGTGAATGTCTaGGGCTGCTTCCTCTTGAGT +
Preference number: 5 (lower is better)
Translates to: LGGEAHPRSPVGEWVAPARTVNV*GCFLLS
Trigger: ACTCAAGAGGAAGCAGCCCAAGACATTCACGGTGCG...TGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGGGCCTCCCCTCCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS GCA 90 bp TCCTCAGCCATCTTCAATGCCAGCACTTCAGCCTCCAGCACCTTCTaGTCCATCAGGCGCTTCTCCTCCTCTGTCCGAATGGCCGTGGCC +
Preference number: 5 (lower is better)
Translates to: SSAIFNASTSASSTF*SIRRFSSSVRMAVA
Trigger: GGCCACGGCCATTCGGACAGAGGAGGAGAAGCGCCTGATGGAGCAGAAGGTGCTGGAGGCTGAAGTGCTGGCATTGAAGATGGCTGAGGA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp GGAGGGGAGGCCCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTGCATGGCGCATCAGAGCTTCATaGGCCATCGTTGCTTCTTCT +
Preference number: 5 (lower is better)
Translates to: GGEAHPRSPVGEWVAPAWRIRAS*AIVASS
Trigger: AGAAGAAGCAACGATGGCCAATGAAGCTCTGATGCG...CCATGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGGGCCTCCCCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp GGCACTGATGGGAATGTGACTGGGAAGCTCCTGGCCCACCAAAGGCTCATGTGCTCCGTCTTGAGCTCGTaGAGCTGCTCCTGCAGGTGC +
Preference number: 5 (lower is better)
Translates to: GTDGNVTGKLLAHQRLMCSVLSS*SCSCRC
Trigger: GCACCTGCAGGAGCAGCTCAACGAGCTCAAGACGGA...GCACATGAGCCTTTGGTGGGCCAGGAGCTTCCCAGTCACATTCCCATCAGTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS TCA 90 bp GCTCCATCAGGCGCTTCTCCTCCTCTGTCCGAATGGCCGTGGCCTTaGTTCGCTGCATCTCTTGCTCAGCCTCTGCAGCCTTTTGTGCCA +
Preference number: 5 (lower is better)
Translates to: APSGASPPLSEWPWP*FAASLAQPLQPFVP
Trigger: TGGCACAAAAGGCTGCAGAGGCTGAGCAAGAGATGCAGCGAATCAAGGCCACGGCCATTCGGACAGAGGAGGAGAAGCGCCTGATGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp CAGTACTTGGGAGGCAGAGGCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCATCCGTCTTGAGCTCGTaGAGCTGCTCCTGCAGGTGC +
Preference number: 5 (lower is better)
Translates to: QYLGGRGRHSTAFEARLASVLSS*SCSCRC
Trigger: GCACCTGCAGGAGCAGCTCAACGAGCTCAAGACGGA...TGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGCCTCTGCCTCCCAAGTACTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CAA 90 bp GGGGGACAGAAGCCAAAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACTTCCGTCTTGAGCTCGTaGAGCTGCTCCTGCAGGTGC +
Preference number: 5 (lower is better)
Translates to: GGQKPKWPLEQPWDSQLTSVLSS*SCSCRC
Trigger: GCACCTGCAGGAGCAGCTCAACGAGCTCAAGACGGA...AGTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTTTGGCTTCTGTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CAA 90 bp GCACAGCTCCTTCCATGCGGTAGGGGGACAGAAGCCAAAGTGGCCTTTAGAGCAGCCTCGATCTCCGTCTaGAGCTCGTTGAGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: AQLLPCGRGTEAKVAFRAASISV*SSLSCS
Trigger: GGAGCAGCTCAACGAGCTCAAGACGGAGATCGAGGC...TGCTCTAAAGGCCACTTTGGCTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS GCA 90 bp CTCCTCTCTAACTCATCTCTTGTACGCTCGGCCTCCTCCCGCATCTaGTTCTCTCGAGCCAGCCGCTGCCTTTCCATCTGCTTTCTAGCC +
Preference number: 5 (lower is better)
Translates to: LLSNSSLVRSASSRI*FSRASRCLSICFLA
Trigger: GGCTAGAAAGCAGATGGAAAGGCAGCGGCTGGCTCGAGAGAAGCAGATGCGGGAGGAGGCCGAGCGTACAAGAGATGAGTTAGAGAGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS GCA 90 bp TCCTCCTCTGTCCGAATGGCCGTGGCCTTGATTCGCTGCATCTCTTaGTCAGCCTCTGCAGCCTTTTGTGCCAAAAGCTTGGCCTCCTCC +
Preference number: 5 (lower is better)
Translates to: SSSVRMAVALIRCIS*SASAAFCAKSLASS
Trigger: GGAGGAGGCCAAGCTTTTGGCACAAAAGGCTGCAGAGGCTGAGCAAGAGATGCAGCGAATCAAGGCCACGGCCATTCGGACAGAGGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp GGAGGGGAGGCCCATCCCAGAAGCCCAGTTGGGGAGTGGGTAGCACCTGCATGGCTTCATTGGCCATCGTaGCTTCTTCTTTCATCTGCA +
Preference number: 5 (lower is better)
Translates to: GGEAHPRSPVGEWVAPAWLHWPS*LLLSSA
Trigger: TGCAGATGAAAGAAGAAGCAACGATGGCCAATGAAG...CCATGCAGGTGCTACCCACTCCCCAACTGGGCTTCTGGGATGGGCCTCCCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp CCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTTTGGGTCAGGCCCATCCTGTGCCTCGATCTCCGTCTaGAGCTCGTTGAGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: PKQASPLLMVPFGSGPSCASISV*SSLSCS
Trigger: GGAGCAGCTCAACGAGCTCAAGACGGAGATCGAGGC...ACAGGATGGGCCTGACCCAAAAGGAACCATCAGTAGAGGGCTGGCTTGTTTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp CCGTACTGTGGAACATCGCCTTGCTCAGCCCCTCAGCTCAGCTGTCCTCAGTTAGCCGTCTCCCGCTCTTaGAGTTTCAAGGCCTCGATC +
Preference number: 5 (lower is better)
Translates to: PYCGTSPCSAPQLSCPQLAVSRS*SFKASI
Trigger: GATCGAGGCCTTGAAACTCAAAGAGCGGGAGACGGC...TAACTGAGGACAGCTGAGCTGAGGGGCTGAGCAAGGCGATGTTCCACAGTACGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp AAATCCCCAACCCCCATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCAAGGCCACTCGGGACTaGGCGCTCTGCAGAGTGAGC +
Preference number: 5 (lower is better)
Translates to: KSPTPIAGSELSQSTLLPKATRD*ALCRVS
Trigger: GCTCACTCTGCAGAGCGCCAAGTCCCGAGTGGCCTT...GGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAATGGGGGTTGGGGATTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS GCA 90 bp ATCTCGGCGTCCATGGTGACGATCCGCACCGTGAATGTCTTGGGCTaGTTCCTCTTGAGTGAGCTGAAGCTCATGCGAGAAGCGATGGCT +
Preference number: 5 (lower is better)
Translates to: ISASMVTIRTVNVLG*FLLSELKLMREAMA
Trigger: AGCCATCGCTTCTCGCATGAGCTTCAGCTCACTCAAGAGGAAGCAGCCCAAGACATTCACGGTGCGGATCGTCACCATGGACGCCGAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000109910.9
ENSMUST00000164190.8
ENSMUST00000172305.2
CDS GCA 90 bp CCGAATGGCCGTGGCCTTGATTCGCTGCATCTCTTGCTCAGCCTCTaGAGCCTTTTGTGCCAAAAGCTTGGCCTCCTCCTCTGTGATCTG +
Preference number: 5 (lower is better)
Translates to: PNGRGLDSLHLLLSL*SLLCQKLGLLLCDL
Trigger: CAGATCACAGAGGAGGAGGCCAAGCTTTTGGCACAAAAGGCTGCAGAGGCTGAGCAAGAGATGCAGCGAATCAAGGCCACGGCCATTCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp CGGGGCCCTCAACTCAAGAGTTCCCAAACAAGCCAGCCCTCTACTGATGGTTCCCGCACCGTGAATGTCTaGGGCTGCTTCCTCTTGAGT +
Preference number: 5 (lower is better)
Translates to: RGPQLKSSQTSQPSTDGSRTVNV*GCFLLS
Trigger: ACTCAAGAGGAAGCAGCCCAAGACATTCACGGTGCG...GGAACCATCAGTAGAGGGCTGGCTTGTTTGGGAACTCTTGAGTTGAGGGCCCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp TGGCCGGGTCACCTGCTAGAGTTCTTCAAAGAAGGCCACTCGGGACTTGGCGCTCATTTCATCTCGCAGTaGAACTCCATCTCGGCGTCC +
Preference number: 5 (lower is better)
Translates to: WPGHLLEFFKEGHSGLGAHFISQ*NSISAS
Trigger: GGACGCCGAGATGGAGTTCAACTGCGAGATGAAATG...AGCGCCAAGTCCCGAGTGGCCTTCTTTGAAGAACTCTAGCAGGTGACCCGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056290.13
CDS-3UTR CAA 90 bp AGGGGGACAGAAGCCAAAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACCATGGGAAGGAGATCTaGGGGGTCAGCCTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: RGTEAKVAFRAAMGQPTHHGKEI*GVSLFS
Trigger: TGAGAACAGGCTGACCCCCAAGATCTCCTTCCCATG...GTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTTTGGCTTCTGTCCCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CAA 90 bp GGTTCCTTTTGGGTCAGGCCCATCCTGTTGGTGTCAGGAGCAGCAGATGTGGCAAGCCTCTGCAGCCTTTaGTGCCAAAAGCTTGGCCTC +
Preference number: 5 (lower is better)
Translates to: GSFWVRPILLVSGAADVASLCSL*CQKLGL
Trigger: GAGGCCAAGCTTTTGGCACAAAAGGCTGCAGAGGCT...TGCCACATCTGCTGCTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp CGTGCACCACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGTATGCTCCTGCAGGTGCTaGCTCTTCTCCATGTACTCC +
Preference number: 5 (lower is better)
Translates to: RAPQCLGAGRMAAHTQQVCSCRC*LFSMYS
Trigger: GGAGTACATGGAGAAGAGCAAGCACCTGCAGGAGCA...TACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTGGTGCACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp CCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTTTGGGTCAGGCCCATCCTGTACCTTCTTGTCCATTTaGAGCCAGGCCACCGTGTCC +
Preference number: 5 (lower is better)
Translates to: PKQASPLLMVPFGSGPSCTFLSI*SQATVS
Trigger: GGACACGGTGGCCTGGCTCAAAATGGACAAGAAGGT...ACAGGATGGGCCTGACCCAAAAGGAACCATCAGTAGAGGGCTGGCTTGTTTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp CATGCACAGCTCCTTCCATGCGGTAGGGGGACAGAAGCCAAAGTGGCCTTTAGATCTCTAACTCATCTCTaGTACGCTCGGCCTCCTCCC +
Preference number: 5 (lower is better)
Translates to: HAQLLPCGRGTEAKVAFRSLTHL*YARPPP
Trigger: GGGAGGAGGCCGAGCGTACAAGAGATGAGTTAGAGA...TCTAAAGGCCACTTTGGCTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CAA 90 bp AGTACTTGGGAGGCAGAGGCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCATTGCTCCTGCAGGTGCTaGCTCTTCTCCATGTACTCC +
Preference number: 5 (lower is better)
Translates to: STWEAEAGIVQHLRPGWHCSCRC*LFSMYS
Trigger: GGAGTACATGGAGAAGAGCAAGCACCTGCAGGAGCA...ATGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGCCTCTGCCTCCCAAGTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CAA 90 bp ATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCCATGCTTGGAGGGGAGCCGTCTCCCGCTCTTaGAGTTTCAAGGCCTCGATC +
Preference number: 5 (lower is better)
Translates to: IAGSELSQSTLLPHAWRGAVSRS*SFKASI
Trigger: GATCGAGGCCTTGAAACTCAAAGAGCGGGAGACGGC...TCCCCTCCAAGCATGGGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp GCAGCCATGGGACAGCCAACTCACTGCAACTGGCTTAAAGATGCACCAGTGTTCGCCGTCTCCCGCTCTTaGAGTTTCAAGGCCTCGATC +
Preference number: 5 (lower is better)
Translates to: AAMGQPTHCNWLKDAPVFAVSRS*SFKASI
Trigger: GATCGAGGCCTTGAAACTCAAAGAGCGGGAGACGGC...GAACACTGGTGCATCTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CAA 90 bp GTCTGCAATGGGACAGTTGCAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCAGCCTCTGCAGCCTTTaGTGCCAAAAGCTTGGCCTC +
Preference number: 5 (lower is better)
Translates to: VCNGTVADELVHAQLLPCSLCSL*CQKLGL
Trigger: GAGGCCAAGCTTTTGGCACAAAAGGCTGCAGAGGCT...GCATGGAAGGAGCTGTGCATGGACAAGCTCATCTGCAACTGTCCCATTGCAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CAA 90 bp AAATCCCCAACCCCCATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCTGCTCCTGCAGGTGCTaGCTCTTCTCCATGTACTCC +
Preference number: 5 (lower is better)
Translates to: KSPTPIAGSELSQSTLLPCSCRC*LFSMYS
Trigger: GGAGTACATGGAGAAGAGCAAGCACCTGCAGGAGCA...GGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAATGGGGGTTGGGGATTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp GCCCTCAACTCAAGAGTTCCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTTTTCCGTCTTGAGCTCGTaGAGCTGCTCCTGCAGGTGC +
Preference number: 5 (lower is better)
Translates to: ALNSRVPKQASPLLMVPFSVLSS*SCSCRC
Trigger: GCACCTGCAGGAGCAGCTCAACGAGCTCAAGACGGA...AAAAGGAACCATCAGTAGAGGGCTGGCTTGTTTGGGAACTCTTGAGTTGAGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS GCA 90 bp TTCTTGTCCATTTTGAGCCAGGCCACCGTGTCCTTGATTGTATACTaGAGTCCAAAGAACCAGGTTTCCCGAAGCCCCAGTGTCCGGCAC +
Preference number: 5 (lower is better)
Translates to: FLSILSQATVSLIVY*SPKNQVSRSPSVRH
Trigger: GTGCCGGACACTGGGGCTTCGGGAAACCTGGTTCTTTGGACTGCAGTATACAATCAAGGACACGGTGGCCTGGCTCAAAATGGACAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000109910.9
ENSMUST00000164190.8
CDS-3UTR CAA 90 bp GTACAGCATTTGAGGCCAGGCTGGCATAGAGAATGCCAGACCAGCCAGAACTACCATTTCATCTCGCAGTaGAACTCCATCTCGGCGTCC +
Preference number: 5 (lower is better)
Translates to: VQHLRPGWHRECQTSQNYHFISQ*NSISAS
Trigger: GGACGCCGAGATGGAGTTCAACTGCGAGATGAAATG...GTAGTTCTGGCTGGTCTGGCATTCTCTATGCCAGCCTGGCCTCAAATGCTGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CAA 90 bp GTACAGCATTTGAGGCCAGGCTGGCATAGAGAATGCCAGACCAGCCAGAACTACCAGGCCACCGTGTCCTaGATTGTATACTGCAGTCCA +
Preference number: 5 (lower is better)
Translates to: VQHLRPGWHRECQTSQNYQATVS*IVYCSP
Trigger: TGGACTGCAGTATACAATCAAGGACACGGTGGCCTG...GTAGTTCTGGCTGGTCTGGCATTCTCTATGCCAGCCTGGCCTCAAATGCTGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CAA 90 bp ATTGCTGGTTCTGAGCTAAGCCAGTCCACACTTCTACCCCATGCTTGGAGGGGACAGGCCACCGTGTCCTaGATTGTATACTGCAGTCCA +
Preference number: 5 (lower is better)
Translates to: IAGSELSQSTLLPHAWRGQATVS*IVYCSP
Trigger: TGGACTGCAGTATACAATCAAGGACACGGTGGCCTG...TCCCCTCCAAGCATGGGGTAGAAGTGTGGACTGGCTTAGCTCAGAACCAGCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp AACACATTGAGAAACCTCTCTATAGGGTCAGAGTGGCACGGGGCCCTCAACTCACATGGGAAGGAGATCTaGGGGGTCAGCCTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: NTLRNLSIGSEWHGALNSHGKEI*GVSLFS
Trigger: TGAGAACAGGCTGACCCCCAAGATCTCCTTCCCATG...TGAGTTGAGGGCCCCGTGCCACTCTGACCCTATAGAGAGGTTTCTCAATGTGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp CTTGTCCATGCACAGCTCCTTCCATGCGGTAGGGGGACAGAAGCCAAAGTGGCCCTTCATTGGCCATCGTaGCTTCTTCTTTCATCTGCA +
Preference number: 5 (lower is better)
Translates to: LVHAQLLPCGRGTEAKVALHWPS*LLLSSA
Trigger: TGCAGATGAAAGAAGAAGCAACGATGGCCAATGAAG...GGCCACTTTGGCTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CAA 90 bp GCAGGCATAGTACAGCATTTGAGGCCAGGCTGGCATAGAGAATGCCAGACCAGCCGCATCAGAGCTTCATaGGCCATCGTTGCTTCTTCT +
Preference number: 5 (lower is better)
Translates to: AGIVQHLRPGWHRECQTSRIRAS*AIVASS
Trigger: AGAAGAAGCAACGATGGCCAATGAAGCTCTGATGCG...GCTGGTCTGGCATTCTCTATGCCAGCCTGGCCTCAAATGCTGTACTATGCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CAA 90 bp AGCCCTCTACTGATGGTTCCTTTTGGGTCAGGCCCATCCTGTTGGTGTCAGGAGCGCATCAGAGCTTCATaGGCCATCGTTGCTTCTTCT +
Preference number: 5 (lower is better)
Translates to: SPLLMVPFGSGPSCWCQERIRAS*AIVASS
Trigger: AGAAGAAGCAACGATGGCCAATGAAGCTCTGATGCG...CTCCTGACACCAACAGGATGGGCCTGACCCAAAAGGAACCATCAGTAGAGGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp GTTGCAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCGGTAGGGGGACAGAACGCATCAGAGCTTCATaGGCCATCGTTGCTTCTTCT +
Preference number: 5 (lower is better)
Translates to: VADELVHAQLLPCGRGTERIRAS*AIVASS
Trigger: AGAAGAAGCAACGATGGCCAATGAAGCTCTGATGCG...TTCTGTCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTGCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CAA 90 bp AGGCAGGCACATGCCTATAATTCCAGCATTAAGGAGGCTGAGACAGGTGCATTCACCTTCTTGTCCATTTaGAGCCAGGCCACCGTGTCC +
Preference number: 5 (lower is better)
Translates to: RQAHAYNSSIKEAETGAFTFLSI*SQATVS
Trigger: GGACACGGTGGCCTGGCTCAAAATGGACAAGAAGGT...GAATGCACCTGTCTCAGCCTCCTTAATGCTGGAATTATAGGCATGTGCCTGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CAA 90 bp ACCGTACTGTGGAACATCGCCTTGCTCAGCCCCTCAGCTCAGCTGTCCTCAGTTCTTCATTGGCCATCGTaGCTTCTTCTTTCATCTGCA +
Preference number: 5 (lower is better)
Translates to: TVLWNIALLSPSAQLSSVLHWPS*LLLSSA
Trigger: TGCAGATGAAAGAAGAAGCAACGATGGCCAATGAAG...AACTGAGGACAGCTGAGCTGAGGGGCTGAGCAAGGCGATGTTCCACAGTACGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp CAAATGCTGCTAACTCATCTCCTGGGTGTCTGCAATGGGACAGTTGCAGATGAGTGCTCCTGCAGGTGCTaGCTCTTCTCCATGTACTCC +
Preference number: 5 (lower is better)
Translates to: QMLLTHLLGVCNGTVADECSCRC*LFSMYS
Trigger: GGAGTACATGGAGAAGAGCAAGCACCTGCAGGAGCA...CTCATCTGCAACTGTCCCATTGCAGACACCCAGGAGATGAGTTAGCAGCATTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CAA 90 bp AGAGAGAGGGAGGGAGAGAGAGATATGCAGGTATGCAGGAGGCAAGGAGAACTATTAATGGTATTATGCTaGCTGCTGGGGCCGCCTCTG +
Preference number: 5 (lower is better)
Translates to: REREGERDMQVCRRQGELLMVLC*LLGPPL
Trigger: CAGAGGCGGCCCCAGCAGCAAGCATAATACCATTAA...TAGTTCTCCTTGCCTCCTGCATACCTGCATATCTCTCTCTCCCTCCCTCTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp GCCATGGGACAGCCAACTCACTGCAACTGGCTTAAAGATGCACCAGTGTTCTGTTTAATGGTATTATGCTaGCTGCTGGGGCCGCCTCTG +
Preference number: 5 (lower is better)
Translates to: AMGQPTHCNWLKDAPVFCLMVLC*LLGPPL
Trigger: CAGAGGCGGCCCCAGCAGCAAGCATAATACCATTAA...ACAGAACACTGGTGCATCTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CAA 90 bp CAGATGAGCTTGTCCATGCACAGCTCCTTCCATGCGGTAGGGGGACAGAAGCCAGATAGGTCTTCTGCCTaGGGCTTGAGGCTTTTTAAT +
Preference number: 5 (lower is better)
Translates to: QMSLSMHSSFHAVGGQKPDRSSA*GLRLFN
Trigger: ATTAAAAAGCCTCAAGCCCAAGGCAGAAGACCTATC...TGGCTTCTGTCCCCCTACCGCATGGAAGGAGCTGTGCATGGACAAGCTCATCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS CCA 90 bp CTTCTCTGGCTTCTTGCAAGTCTTGCTTTAACTGATCAGCCTCCTTaGCCCTCCTCTCTGACTCCTCAGCCATCTTCAATGCCAGCACTT +
Preference number: 5 (lower is better)
Translates to: LLWLLASLALTDQPP*PSSLTPQPSSMPAL
Trigger: AAGTGCTGGCATTGAAGATGGCTGAGGAGTCAGAGAGGAGGGCCAAGGAGGCTGATCAGTTAAAGCAAGACTTGCAAGAAGCCAGAGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp GCCCTCAACTCAAGAGTTCCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTTTCAGGCCACCGTGTCCTaGATTGTATACTGCAGTCCA +
Preference number: 5 (lower is better)
Translates to: ALNSRVPKQASPLLMVPFQATVS*IVYCSP
Trigger: TGGACTGCAGTATACAATCAAGGACACGGTGGCCTG...AAAAGGAACCATCAGTAGAGGGCTGGCTTGTTTGGGAACTCTTGAGTTGAGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp AATAATGTCGAAGCTCGGTATGTCAGGAGGCAGTGGTGGTGGAATTGGGTTCATCATGGGAAGGAGATCTaGGGGGTCAGCCTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: NNVEARYVRRQWWWNWVHHGKEI*GVSLFS
Trigger: TGAGAACAGGCTGACCCCCAAGATCTCCTTCCCATG...ATGAACCCAATTCCACCACCACTGCCTCCTGACATACCGAGCTTCGACATTATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
CDS-3UTR CAA 90 bp GCACATGGTAAGCATTTGTTGCCTAGCATGGAGGCAACCCATAGTGTTAGCTTGTCTCTAACTCATCTCTaGTACGCTCGGCCTCCTCCC +
Preference number: 5 (lower is better)
Translates to: AHGKHLLPSMEATHSVSLSLTHL*YARPPP
Trigger: GGGAGGAGGCCGAGCGTACAAGAGATGAGTTAGAGA...CAAGCTAACACTATGGGTTGCCTCCATGCTAGGCAACAAATGCTTACCATGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp CAAGGTGGTGTGCCTCAGTTTCTCAAAAACAAACCGTACTGTGGAACATCGCCTAGCCTCTGCAGCCTTTaGTGCCAAAAGCTTGGCCTC +
Preference number: 5 (lower is better)
Translates to: QGGVPQFLKNKPYCGTSPSLCSL*CQKLGL
Trigger: GAGGCCAAGCTTTTGGCACAAAAGGCTGCAGAGGCT...AGGCGATGTTCCACAGTACGGTTTGTTTTTGAGAAACTGAGGCACACCACCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp CGGGGCCCTCAACTCAAGAGTTCCCAAACAAGCCAGCCCTCTACTGATGGTTCCTTCATGTCCGTATCCTaGAAGTCAAATGACAAGCTG +
Preference number: 5 (lower is better)
Translates to: RGPQLKSSQTSQPSTDGSFMSVS*KSNDKL
Trigger: CAGCTTGTCATTTGACTTCAAGGATACGGACATGAA...GGAACCATCAGTAGAGGGCTGGCTTGTTTGGGAACTCTTGAGTTGAGGGCCCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp ATGTGGCAGGAGGTGGCCGGGTCACCTGCTAGAGTTCTTCAAAGAAGGCCACTCTCTTCTGCCTTGGGCTaGAGGCTTTTTAATGGTATT +
Preference number: 5 (lower is better)
Translates to: MWQEVAGSPARVLQRRPLSSALG*RLFNGI
Trigger: AATACCATTAAAAAGCCTCAAGCCCAAGGCAGAAGA...GAGTGGCCTTCTTTGAAGAACTCTAGCAGGTGACCCGGCCACCTCCTGCCACAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056290.13
CDS-3UTR CAA 90 bp TCACCTGCTAGAGTTCTTCAAAGAAGGCCACTCGGGACTTGGCGCTCTGCAGAGGATAGGTCTTCTGCCTaGGGCTTGAGGCTTTTTAAT +
Preference number: 5 (lower is better)
Translates to: SPARVLQRRPLGTWRSAEDRSSA*GLRLFN
Trigger: ATTAAAAAGCCTCAAGCCCAAGGCAGAAGACCTATC...CTCTGCAGAGCGCCAAGTCCCGAGTGGCCTTCTTTGAAGAACTCTAGCAGGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056290.13
CDS TCA 90 bp CCCTGCTTTCTAGCCTTCTCTTCCCTGGCCTGGGCTTTCATCTGCTaGACTTCTAAAGAGTCAGCTTTCCGTCGCCTCATAAATAGGTCA +
Preference number: 5 (lower is better)
Translates to: PCFLAFSSLAWAFIC*TSKESAFRRLINRS
Trigger: TGACCTATTTATGAGGCGACGGAAAGCTGACTCTTTAGAAGTTCAGCAGATGAAAGCCCAGGCCAGGGAAGAGAAGGCTAGAAAGCAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
CDS GCA 90 bp TCTTTGAGTTTCAAGGCCTCGATCTCCGTCTTGAGCTCGTTGAGCTaGTCCTGCAGGTGCTTGCTCTTCTCCATGTACTCCACTTTTTCT +
Preference number: 5 (lower is better)
Translates to: SLSFKASISVLSSLS*SCRCLLFSMYSTFS
Trigger: AGAAAAAGTGGAGTACATGGAGAAGAGCAAGCACCTGCAGGAGCAGCTCAACGAGCTCAAGACGGAGATCGAGGCCTTGAAACTCAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp GAATGCCAGACCAGCCAGAACTACACAGCAAGGCCCTATTTTAAATACCAAACCCGCACCGTGAATGTCTaGGGCTGCTTCCTCTTGAGT +
Preference number: 5 (lower is better)
Translates to: ECQTSQNYTARPYFKYQTRTVNV*GCFLLS
Trigger: ACTCAAGAGGAAGCAGCCCAAGACATTCACGGTGCG...GGTTTGGTATTTAAAATAGGGCCTTGCTGTGTAGTTCTGGCTGGTCTGGCATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CAA 90 bp TTGGACCTCACCTTCCAAGAAATGGCGAAATGGTTACACCCACCATTCCTCAAAACCTTCTTGTCCATTTaGAGCCAGGCCACCGTGTCC +
Preference number: 5 (lower is better)
Translates to: LDLTFQEMAKWLHPPFLKTFLSI*SQATVS
Trigger: GGACACGGTGGCCTGGCTCAAAATGGACAAGAAGGT...TTTGAGGAATGGTGGGTGTAACCATTTCGCCATTTCTTGGAAGGTGAGGTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp ACTGTTGCTGGGAGTCAGCCTCTGGGCTTTTTGAAAGTATGGGAGCATGAGAAATTAATGGTATTATGCTaGCTGCTGGGGCCGCCTCTG +
Preference number: 5 (lower is better)
Translates to: TVAGSQPLGFLKVWEHEKLMVLC*LLGPPL
Trigger: CAGAGGCGGCCCCAGCAGCAAGCATAATACCATTAA...TTTCTCATGCTCCCATACTTTCAAAAAGCCCAGAGGCTGACTCCCAGCAACAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp GTACAGCATTTGAGGCCAGGCTGGCATAGAGAATGCCAGACCAGCCAGAACTACGATAGGTCTTCTGCCTaGGGCTTGAGGCTTTTTAAT +
Preference number: 5 (lower is better)
Translates to: VQHLRPGWHRECQTSQNYDRSSA*GLRLFN
Trigger: ATTAAAAAGCCTCAAGCCCAAGGCAGAAGACCTATC...GTAGTTCTGGCTGGTCTGGCATTCTCTATGCCAGCCTGGCCTCAAATGCTGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS GCA 90 bp CATAGATATGAAGCCCAAGAGCATCCACTCCAAGCAGCAACTCTGTaGCCTTTTTATTCTTGGCCTGGACAGCATATGACGCCAAGAGCA +
Preference number: 5 (lower is better)
Translates to: HRYEAQEHPLQAATL*PFYSWPGQHMTPRA
Trigger: TGCTCTTGGCGTCATATGCTGTCCAGGCCAAGAATAAAAAGGGCACAGAGTTGCTGCTTGGAGTGGATGCTCTTGGGCTTCATATCTATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000152656.8
CDS-3UTR CAA 90 bp GTACAGCATTTGAGGCCAGGCTGGCATAGAGAATGCCAGACCAGCCAGAACTACTTCATGTCCGTATCCTaGAAGTCAAATGACAAGCTG +
Preference number: 5 (lower is better)
Translates to: VQHLRPGWHRECQTSQNYFMSVS*KSNDKL
Trigger: CAGCTTGTCATTTGACTTCAAGGATACGGACATGAA...GTAGTTCTGGCTGGTCTGGCATTCTCTATGCCAGCCTGGCCTCAAATGCTGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS TCA 90 bp ATCTGCTTTCTAGCCTTCTCTTCCCTGGCCTGGGCTTTCATCTGCTaGACTTCTAAAGAGTCAGCTTTCCGTCGCCTCATAAATAGGTCA +
Preference number: 5 (lower is better)
Translates to: ICFLAFSSLAWAFIC*TSKESAFRRLINRS
Trigger: TGACCTATTTATGAGGCGACGGAAAGCTGACTCTTTAGAAGTTCAGCAGATGAAAGCCCAGGCCAGGGAAGAGAAGGCTAGAAAGCAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
ENSMUST00000164190.8
CDS CCA 90 bp AGTAAACTCCTTGTCGCTGTAGGAGATGTTTCGGATTTCATTCCATaGGAAGGAGATCTTGGGGGTCAGCCTGTTCTCAGGGTCATAGAT +
Preference number: 5 (lower is better)
Translates to: SKLLVAVGDVSDFIP*EGDLGGQPVLRVID
Trigger: ATCTATGACCCTGAGAACAGGCTGACCCCCAAGATCTCCTTCCCATGGAATGAAATCCGAAACATCTCCTACAGCGACAAGGAGTTTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
ENSMUST00000152656.8
CDS-3UTR CAA 90 bp GCCATGGGACAGCCAACTCACTGCAACTGGCTTAAAGATGCACCAGTGTTCTGTTTCATGTCCGTATCCTaGAAGTCAAATGACAAGCTG +
Preference number: 5 (lower is better)
Translates to: AMGQPTHCNWLKDAPVFCFMSVS*KSNDKL
Trigger: CAGCTTGTCATTTGACTTCAAGGATACGGACATGAA...ACAGAACACTGGTGCATCTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CAA 90 bp AAGTGGCCTTTAGAGCAGCCATGGGACAGCCAACTCACTGCAACTGGCTTAAAGTCTTCTGCCTTGGGCTaGAGGCTTTTTAATGGTATT +
Preference number: 5 (lower is better)
Translates to: KWPLEQPWDSQLTATGLKSSALG*RLFNGI
Trigger: AATACCATTAAAAAGCCTCAAGCCCAAGGCAGAAGA...CTTTAAGCCAGTTGCAGTGAGTTGGCTGTCCCATGGCTGCTCTAAAGGCCACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000093374.11
CDS-3UTR CAA 90 bp ACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCCTGCATAAGCCTCTGCAGCCTTTaGTGCCAAAAGCTTGGCCTC +
Preference number: 5 (lower is better)
Translates to: TSLDLGDTSVSIIGQACISLCSL*CQKLGL
Trigger: GAGGCCAAGCTTTTGGCACAAAAGGCTGCAGAGGCT...TATGCAGGCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CAA 90 bp AATCTAAACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCGCCTCGATCTCCGTCTaGAGCTCGTTGAGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: NLNKFGFGRYICFHNRTGASISV*SSLSCS
Trigger: GGAGCAGCTCAACGAGCTCAAGACGGAGATCGAGGC...GCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGTTTAGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CAA 90 bp ATAATTCCAGCATTAAGGAGGCTGAGACAGGTGCATTCTAAATTGTTCATCCAAGCCGTCTCCCGCTCTTaGAGTTTCAAGGCCTCGATC +
Preference number: 5 (lower is better)
Translates to: IIPALRRLRQVHSKLFIQAVSRS*SFKASI
Trigger: GATCGAGGCCTTGAAACTCAAAGAGCGGGAGACGGC...TTGGATGAACAATTTAGAATGCACCTGTCTCAGCCTCCTTAATGCTGGAATTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CAA 90 bp ATAATTCCAGCATTAAGGAGGCTGAGACAGGTGCATTCTAAATTGTTCATCCAATCTCTAACTCATCTCTaGTACGCTCGGCCTCCTCCC +
Preference number: 5 (lower is better)
Translates to: IIPALRRLRQVHSKLFIQSLTHL*YARPPP
Trigger: GGGAGGAGGCCGAGCGTACAAGAGATGAGTTAGAGA...TTGGATGAACAATTTAGAATGCACCTGTCTCAGCCTCCTTAATGCTGGAATTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CAA 90 bp CACAGTGCTTGGGTGCAGGAAGGATGGCAGCCCACACACAACAAGTATTTATATTTCATGTCCGTATCCTaGAAGTCAAATGACAAGCTG +
Preference number: 5 (lower is better)
Translates to: HSAWVQEGWQPTHNKYLYFMSVS*KSNDKL
Trigger: CAGCTTGTCATTTGACTTCAAGGATACGGACATGAA...ATATAAATACTTGTTGTGTGTGGGCTGCCATCCTTCCTGCACCCAAGCACTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056290.13
ENSMUST00000109910.9
CDS-3UTR CAA 90 bp AATCTAAACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCCATGGGAAGGAGATCTaGGGGGTCAGCCTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: NLNKFGFGRYICFHNRTGHGKEI*GVSLFS
Trigger: TGAGAACAGGCTGACCCCCAAGATCTCCTTCCCATG...GCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGTTTAGATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CAA 90 bp GAATGCCAGACCAGCCAGAACTACACAGCAAGGCCCTATTTTAAATACCAAACCTCTTCTGCCTTGGGCTaGAGGCTTTTTAATGGTATT +
Preference number: 5 (lower is better)
Translates to: ECQTSQNYTARPYFKYQTSSALG*RLFNGI
Trigger: AATACCATTAAAAAGCCTCAAGCCCAAGGCAGAAGA...GGTTTGGTATTTAAAATAGGGCCTTGCTGTGTAGTTCTGGCTGGTCTGGCATTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CAA 90 bp AATCTAAACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCTTAATGGTATTATGCTaGCTGCTGGGGCCGCCTCTG +
Preference number: 5 (lower is better)
Translates to: NLNKFGFGRYICFHNRTGLMVLC*LLGPPL
Trigger: CAGAGGCGGCCCCAGCAGCAAGCATAATACCATTAA...GCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGTTTAGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS-3UTR CAA 90 bp ACAAGTTTGGATTTGGGAGATACATCTGTTTCCATAATAGGACAGGCCTGCATACTTCATTGGCCATCGTaGCTTCTTCTTTCATCTGCA +
Preference number: 5 (lower is better)
Translates to: TSLDLGDTSVSIIGQACILHWPS*LLLSSA
Trigger: TGCAGATGAAAGAAGAAGCAACGATGGCCAATGAAG...TATGCAGGCCTGTCCTATTATGGAAACAGATGTATCTCCCAAATCCAAACTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053079.13
CDS CCA 90 bp CTCAGCATTTTCAGGATAAAATTTGGCCAGGAAGTGAAAGGTAACTaGTTCTTCCTTCGAAACATCATGATCCAACACCTTCTTGTCCAT +
Preference number: 5 (lower is better)
Translates to: LSIFRIKFGQEVKGN*FFLRNIMIQHLLVH
Trigger: ATGGACAAGAAGGTGTTGGATCATGATGTTTCGAAGGAAGAACCAGTTACCTTTCACTTCCTGGCCAAATTTTATCCTGAAAATGCTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
ENSMUST00000124878.3
CDS CCA 72 bp GAGTGCCCTTCAGGCAGTGGGGCTGGAAGGAGCCTTTaGAGCTGCTTGGCTGTGGCTGTGCTTGCTGCCGTT +
Preference number: 6 (lower is better)
Translates to: ECPSGSGAGRSL*SCLAVAVLAAV
Trigger: AACGGCAGCAAGCACAGCCACAGCCAAGCAGCTCCAAAGGCTCCTTCCAGCCCCACTGCCTGAAGGGCACTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172305.2
CDS TCA 72 bp GGCGCTTCTCCTCCTCTGTCCGAATGGCCGTGGCCTTaGTTCGCTGCATCTCTTGCTCAGCCTCTGCAGCCT +
Preference number: 6 (lower is better)
Translates to: GASPPLSEWPWP*FAASLAQPLQP
Trigger: AGGCTGCAGAGGCTGAGCAAGAGATGCAGCGAATCAAGGCCACGGCCATTCGGACAGAGGAGGAGAAGCGCC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS CCA 72 bp GACAGGCACAGAAGAGTGCCCTTCAGGCAGTGGGGCTaGAAGGAGCCTTTGGAGCTGCTTGGCTGTGGCTGT +
Preference number: 6 (lower is better)
Translates to: DRHRRVPFRQWG*KEPLELLGCGC
Trigger: ACAGCCACAGCCAAGCAGCTCCAAAGGCTCCTTCCAGCCCCACTGCCTGAAGGGCACTCTTCTGTGCCTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172305.2
CDS CAA 72 bp AGGCGCTTCTCCTCCTCTGTCCGAATGGCCGTGGCCTaGATTCGCTGCATCTCTTGCTCAGCCTCTGCAGCC +
Preference number: 6 (lower is better)
Translates to: RRFSSSVRMAVA*IRCISCSASAA
Trigger: GGCTGCAGAGGCTGAGCAAGAGATGCAGCGAATCAAGGCCACGGCCATTCGGACAGAGGAGGAGAAGCGCCT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS GCA 72 bp AACTCATCTCTTGTACGCTCGGCCTCCTCCCGCATCTaGTTCTCTCGAGCCAGCCGCTGCCTTTCCATCTGC +
Preference number: 6 (lower is better)
Translates to: NSSLVRSASSRI*FSRASRCLSIC
Trigger: GCAGATGGAAAGGCAGCGGCTGGCTCGAGAGAAGCAGATGCGGGAGGAGGCCGAGCGTACAAGAGATGAGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS GCA 72 bp CCTTCAGGCAGTGGGGCTGGAAGGAGCCTTTGGAGCTaGTTGGCTGTGGCTGTGCTTGCTGCCGTTCCATTA +
Preference number: 6 (lower is better)
Translates to: PSGSGAGRSLWS*LAVAVLAAVPL
Trigger: TAATGGAACGGCAGCAAGCACAGCCACAGCCAAGCAGCTCCAAAGGCTCCTTCCAGCCCCACTGCCTGAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172305.2
CDS CAA 90 bp TGCTCCATCAGGCGCTTCTCCTCCTCTGTCCGAATGGCCGTGGCCTaGATTCGCTGCATCTCTTGCTCAGCCTCTGCAGCCTTTTGTGCC +
Preference number: 6 (lower is better)
Translates to: CSIRRFSSSVRMAVA*IRCISCSASAAFCA
Trigger: GGCACAAAAGGCTGCAGAGGCTGAGCAAGAGATGCAGCGAATCAAGGCCACGGCCATTCGGACAGAGGAGGAGAAGCGCCTGATGGAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS CAA 90 bp AGGCACAGAAGAGTGCCCTTCAGGCAGTGGGGCTGGAAGGAGCCTTaGGAGCTGCTTGGCTGTGGCTGTGCTTGCTGCCGTTCCATTAAC +
Preference number: 6 (lower is better)
Translates to: RHRRVPFRQWGWKEP*ELLGCGCACCRSIN
Trigger: GTTAATGGAACGGCAGCAAGCACAGCCACAGCCAAGCAGCTCCAAAGGCTCCTTCCAGCCCCACTGCCTGAAGGGCACTCTTCTGTGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172305.2
CDS CAA 90 bp TCTGAGCTCTCGCTGTGTAGGACGTCCAAGGCCGTCTCCCGCTCTTaGAGTTTCAAGGCCTCGATCTCCGTCTTGAGCTCGTTGAGCTGC +
Preference number: 6 (lower is better)
Translates to: SELSLCRTSKAVSRS*SFKASISVLSSLSC
Trigger: GCAGCTCAACGAGCTCAAGACGGAGATCGAGGCCTTGAAACTCAAAGAGCGGGAGACGGCCTTGGACGTCCTACACAGCGAGAGCTCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS GCA 72 bp TCCTCCTCTGTCCGAATGGCCGTGGCCTTGATTCGCTaGATCTCTTGCTCAGCCTCTGCAGCCTTTTGTGCC +
Preference number: 6 (lower is better)
Translates to: SSSVRMAVALIR*ISCSASAAFCA
Trigger: GGCACAAAAGGCTGCAGAGGCTGAGCAAGAGATGCAGCGAATCAAGGCCACGGCCATTCGGACAGAGGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS CAA 72 bp TCGCTGTGTAGGACGTCCAAGGCCGTCTCCCGCTCTTaGAGTTTCAAGGCCTCGATCTCCGTCTTGAGCTCG +
Preference number: 6 (lower is better)
Translates to: SLCRTSKAVSRS*SFKASISVLSS
Trigger: CGAGCTCAAGACGGAGATCGAGGCCTTGAAACTCAAAGAGCGGGAGACGGCCTTGGACGTCCTACACAGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS GCA 72 bp CGTGGCCTTGATTCGCTGCATCTCTTGCTCAGCCTCTaGAGCCTTTTGTGCCAAAAGCTTGGCCTCCTCCTC +
Preference number: 6 (lower is better)
Translates to: RGLDSLHLLLSL*SLLCQKLGLLL
Trigger: GAGGAGGAGGCCAAGCTTTTGGCACAAAAGGCTGCAGAGGCTGAGCAAGAGATGCAGCGAATCAAGGCCACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS CCA 72 bp AAAGAAGACAGGCACAGAAGAGTGCCCTTCAGGCAGTaGGGCTGGAAGGAGCCTTTGGAGCTGCTTGGCTGT +
Preference number: 6 (lower is better)
Translates to: KEDRHRRVPFRQ*GWKEPLELLGC
Trigger: ACAGCCAAGCAGCTCCAAAGGCTCCTTCCAGCCCCACTGCCTGAAGGGCACTCTTCTGTGCCTGTCTTCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172305.2
CDS CAA 72 bp TCCCGCTCTTTGAGTTTCAAGGCCTCGATCTCCGTCTaGAGCTCGTTGAGCTGCTCCTGCAGGTGCTTGCTC +
Preference number: 6 (lower is better)
Translates to: SRSLSFKASISV*SSLSCSCRCLL
Trigger: GAGCAAGCACCTGCAGGAGCAGCTCAACGAGCTCAAGACGGAGATCGAGGCCTTGAAACTCAAAGAGCGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS CAA 90 bp TTGCTTCTTCTTTCATCTGCAGGAGCCTCCTCTCTAACTCATCTCTaGTACGCTCGGCCTCCTCCCGCATCTGCTTCTCTCGAGCCAGCC +
Preference number: 6 (lower is better)
Translates to: LLLLSSAGASSLTHL*YARPPPASASLEPA
Trigger: GGCTGGCTCGAGAGAAGCAGATGCGGGAGGAGGCCGAGCGTACAAGAGATGAGTTAGAGAGGAGGCTCCTGCAGATGAAAGAAGAAGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS GCA 72 bp GTCCGAATGGCCGTGGCCTTGATTCGCTGCATCTCTTaGTCAGCCTCTGCAGCCTTTTGTGCCAAAAGCTTG +
Preference number: 6 (lower is better)
Translates to: VRMAVALIRCIS*SASAAFCAKSL
Trigger: CAAGCTTTTGGCACAAAAGGCTGCAGAGGCTGAGCAAGAGATGCAGCGAATCAAGGCCACGGCCATTCGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS GCA 72 bp ATCTTCAATGCCAGCACTTCAGCCTCCAGCACCTTCTaGTCCATCAGGCGCTTCTCCTCCTCTGTCCGAATG +
Preference number: 6 (lower is better)
Translates to: IFNASTSASSTF*SIRRFSSSVRM
Trigger: CATTCGGACAGAGGAGGAGAAGCGCCTGATGGAGCAGAAGGTGCTGGAGGCTGAAGTGCTGGCATTGAAGAT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS GCA 72 bp TTCAAGGCCTCGATCTCCGTCTTGAGCTCGTTGAGCTaGTCCTGCAGGTGCTTGCTCTTCTCCATGTACTCC +
Preference number: 6 (lower is better)
Translates to: FKASISVLSSLS*SCRCLLFSMYS
Trigger: GGAGTACATGGAGAAGAGCAAGCACCTGCAGGAGCAGCTCAACGAGCTCAAGACGGAGATCGAGGCCTTGAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS GCA 72 bp GCTGTGGCTGTGCTTGCTGCCGTTCCATTAACAGGCTaGAGTGTGATGTCACAGATATGTGATGCGCCTCGC +
Preference number: 6 (lower is better)
Translates to: AVAVLAAVPLTG*SVMSQICDAPR
Trigger: GCGAGGCGCATCACATATCTGTGACATCACACTGCAGCCTGTTAATGGAACGGCAGCAAGCACAGCCACAGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172305.2
CDS GCA 72 bp GAGCCTTTGGAGCTGCTTGGCTGTGGCTGTGCTTGCTaGCGTTCCATTAACAGGCTGCAGTGTGATGTCACA +
Preference number: 6 (lower is better)
Translates to: EPLELLGCGCAC*RSINRLQCDVT
Trigger: TGTGACATCACACTGCAGCCTGTTAATGGAACGGCAGCAAGCACAGCCACAGCCAAGCAGCTCCAAAGGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172305.2
CDS GCA 72 bp AGGGTGGTTTCCAAAAAGAAGACAGGCACAGAAGAGTaGCCTTCAGGCAGTGGGGCTGGAAGGAGCCTTTGG +
Preference number: 6 (lower is better)
Translates to: RVVSKKKTGTEE*PSGSGAGRSLW
Trigger: CCAAAGGCTCCTTCCAGCCCCACTGCCTGAAGGGCACTCTTCTGTGCCTGTCTTCTTTTTGGAAACCACCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000172305.2
CDS CAA 72 bp CTTTCATCTGCAGGAGCCTCCTCTCTAACTCATCTCTaGTACGCTCGGCCTCCTCCCGCATCTGCTTCTCTC +
Preference number: 6 (lower is better)
Translates to: LSSAGASSLTHL*YARPPPASASL
Trigger: GAGAGAAGCAGATGCGGGAGGAGGCCGAGCGTACAAGAGATGAGTTAGAGAGGAGGCTCCTGCAGATGAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS CAA 90 bp CGTGGCCTTGATTCGCTGCATCTCTTGCTCAGCCTCTGCAGCCTTTaGTGCCAAAAGCTTGGCCTCCTCCTCTGTGATCTGAGCCTTTTC +
Preference number: 6 (lower is better)
Translates to: RGLDSLHLLLSLCSL*CQKLGLLLCDLSLF
Trigger: GAAAAGGCTCAGATCACAGAGGAGGAGGCCAAGCTTTTGGCACAAAAGGCTGCAGAGGCTGAGCAAGAGATGCAGCGAATCAAGGCCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS CAA 90 bp TCCCGCTCTTTGAGTTTCAAGGCCTCGATCTCCGTCTTGAGCTCGTaGAGCTGCTCCTGCAGGTGCTTGCTCTTCTCCATGTACTCCACT +
Preference number: 6 (lower is better)
Translates to: SRSLSFKASISVLSS*SCSCRCLLFSMYST
Trigger: AGTGGAGTACATGGAGAAGAGCAAGCACCTGCAGGAGCAGCTCAACGAGCTCAAGACGGAGATCGAGGCCTTGAAACTCAAAGAGCGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS GCA 72 bp TCCATGGTGACGATCCGCACCGTGAATGTCTTGGGCTaGTTCCTCTTGAGTGAGCTGAAGCTCATGCGAGAA +
Preference number: 6 (lower is better)
Translates to: SMVTIRTVNVLG*FLLSELKLMRE
Trigger: TTCTCGCATGAGCTTCAGCTCACTCAAGAGGAAGCAGCCCAAGACATTCACGGTGCGGATCGTCACCATGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000109910.9
ENSMUST00000164190.8
ENSMUST00000172305.2
CDS CCA 72 bp GATCAGCTGTCTCCTCAGAGCGCATCAGAGCTTCATTaGCCATCGTTGCTTCTTCTTTCATCTGCAGGAGCC +
Preference number: 6 (lower is better)
Translates to: DQLSPQSASELH*PSLLLLSSAGA
Trigger: GGCTCCTGCAGATGAAAGAAGAAGCAACGATGGCCAATGAAGCTCTGATGCGCTCTGAGGAGACAGCTGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS CAA 90 bp GATCAGCTGTCTCCTCAGAGCGCATCAGAGCTTCATTGGCCATCGTaGCTTCTTCTTTCATCTGCAGGAGCCTCCTCTCTAACTCATCTC +
Preference number: 6 (lower is better)
Translates to: DQLSPQSASELHWPS*LLLSSAGASSLTHL
Trigger: GAGATGAGTTAGAGAGGAGGCTCCTGCAGATGAAAGAAGAAGCAACGATGGCCAATGAAGCTCTGATGCGCTCTGAGGAGACAGCTGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS TCA 72 bp CTAGCCTTCTCTTCCCTGGCCTGGGCTTTCATCTGCTaGACTTCTAAAGAGTCAGCTTTCCGTCGCCTCATA +
Preference number: 6 (lower is better)
Translates to: LAFSSLAWAFIC*TSKESAFRRLI
Trigger: TATGAGGCGACGGAAAGCTGACTCTTTAGAAGTTCAGCAGATGAAAGCCCAGGCCAGGGAAGAGAAGGCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
ENSMUST00000152656.8
ENSMUST00000164190.8
CDS TCA 72 bp TCTGCTTCTCTGGCTTCTTGCAAGTCTTGCTTTAACTaGTCAGCCTCCTTGGCCCTCCTCTCTGACTCCTCA +
Preference number: 6 (lower is better)
Translates to: SASLASCKSCFN*SASLALLSDSS
Trigger: TGAGGAGTCAGAGAGGAGGGCCAAGGAGGCTGATCAGTTAAAGCAAGACTTGCAAGAAGCCAGAGAAGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS CAA 72 bp TCTCCTCAGAGCGCATCAGAGCTTCATTGGCCATCGTaGCTTCTTCTTTCATCTGCAGGAGCCTCCTCTCTA +
Preference number: 6 (lower is better)
Translates to: SPQSASELHWPS*LLLSSAGASSL
Trigger: TAGAGAGGAGGCTCCTGCAGATGAAAGAAGAAGCAACGATGGCCAATGAAGCTCTGATGCGCTCTGAGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000093374.11
ENSMUST00000109910.9
CDS CAA 72 bp ACCTTCTTGTCCATTTTGAGCCAGGCCACCGTGTCCTaGATTGTATACTGCAGTCCAAAGAACCAGGTTTCC +
Preference number: 6 (lower is better)
Translates to: TFLSILSQATVS*IVYCSPKNQVS
Trigger: GGAAACCTGGTTCTTTGGACTGCAGTATACAATCAAGGACACGGTGGCCTGGCTCAAAATGGACAAGAAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053079.13
ENSMUST00000056290.13
ENSMUST00000109910.9
ENSMUST00000164190.8
CDS GCA 72 bp AGTTCTTCAAAGAAGGCCACTCGGGACTTGGCGCTCTaGAGAGTGAGCTTTTTAATGGTATTATGCTTGCTG +
Preference number: 6 (lower is better)
Translates to: SSSKKATRDLAL*RVSFLMVLCLL
Trigger: CAGCAAGCATAATACCATTAAAAAGCTCACTCTGCAGAGCGCCAAGTCCCGAGTGGCCTTCTTTGAAGAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109910.9