Pregenerated sensors for NEUROG3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044312Ensembl transcript IDs: ENSMUST00000050103.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCCCTGCAACTCACACTTTAGACACGGGAGACAAGTTGGAGAGATaGTCTAGCCATAGGCTAGGGCTTTCCGGTTCACAGCCTGGTCTC | + |
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Preference number: 1 (lower is better) Translates to: VPATHTLDTGDKLER*SSHRLGLSGSQPGL Trigger: GAGACCAGGCTGTGAACCGGAAAGCCCTAGCCTATGGCTAGAGCATCTCTCCAACTTGTCTCCCGTGTCTAAAGTGTGAGTTGCAGGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| 3UTR CCA 90 bp | TCTAGCCATAGGCTAGGGCTTTCCGGTTCACAGCCTGGTCTCCCTTaGGGGAAGGGTAACGACTTGAAAAGTGCAGAAGAAGGCAGATCA | + |
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Preference number: 1 (lower is better) Translates to: SSHRLGLSGSQPGLP*GKGNDLKSAEEGRS Trigger: TGATCTGCCTTCTTCTGCACTTTTCAAGTCGTTACCCTTCCCCCAAGGGAGACCAGGCTGTGAACCGGAAAGCCCTAGCCTATGGCTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| 3UTR-3UTR TCA 90 bp | GAGAGTTTGATGTGGCTGCACCGAGGAGAGTTAAGAGAAGAGCAGCCCCCAATGAAGAGGCGAGATGCTTaGGAGCCTCCACTACCTCCC | + |
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Preference number: 2 (lower is better) Translates to: ESLMWLHRGELREEQPPMKRRDA*EPPLPP Trigger: GGGAGGTAGTGGAGGCTCTCAAGCATCTCGCCTCTT...CATTGGGGGCTGCTCTTCTCTTAACTCTCCTCGGTGCAGCCACATCAAACTCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| 3UTR-3UTR CCA 90 bp | AGTGCAGAAGAAGGCAGATCACCTTCGTGGACTAAGGCAGAATGGAGAAGCTCACTATGGGCCAAGAGCTaGATGGAGGAGCCAGTGAGG | + |
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Preference number: 2 (lower is better) Translates to: SAEEGRSPSWTKAEWRSSLWAKS*MEEPVR Trigger: CCTCACTGGCTCCTCCATCCAGCTCTTGGCCCATAG...TGAGCTTCTCCATTCTGCCTTAGTCCACGAAGGTGATCTGCCTTCTTCTGCACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| 3UTR-3UTR GCA 90 bp | GCAGTAAAGACGACGAACATCATCTATGGGCCAAGAGCTGGATGGAGGAGCCAGGCTACCATTCTCAAATaGTTGGAGCGAGAGTTTGAT | + |
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Preference number: 2 (lower is better) Translates to: AVKTTNIIYGPRAGWRSQATILK*LEREFD Trigger: ATCAAACTCTCGCTCCAAGCATTTGAGAATGGTAGC...CTGGCTCCTCCATCCAGCTCTTGGCCCATAGATGATGTTCGTCGTCTTTACTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| 3UTR CCA 72 bp | TTGAGAGCCTCCACTACCTCCCACTCCAGACGGCTCTaGTCCCCTCCCTTTCCACTAGCACCCACCACCCAG | + |
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Preference number: 3 (lower is better) Translates to: LRASTTSHSRRL*SPPFPLAPTTQ Trigger: CTGGGTGGTGGGTGCTAGTGGAAAGGGAGGGGACCAGAGCCGTCTGGAGTGGGAGGTAGTGGAGGCTCTCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| 3UTR TCA 72 bp | GATCCAAGTAGTGAAAGCCAGAAGAGGCGAGATGCTTaGGAGCCTCCACTACCTCCCACTCCAGACGGCTCT | + |
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Preference number: 3 (lower is better) Translates to: DPSSESQKRRDA*EPPLPPTPDGS Trigger: AGAGCCGTCTGGAGTGGGAGGTAGTGGAGGCTCTCAAGCATCTCGCCTCTTCTGGCTTTCACTACTTGGATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| 3UTR TCA 72 bp | ATCATCTATGGGCCAAGAGCTGGATGGAGGAGCCAGTaGGGTAAGACGCAACACTGGATTAGGTCACCCTGG | + |
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Preference number: 3 (lower is better) Translates to: IIYGPRAGWRSQ*GKTQHWIRSPW Trigger: CCAGGGTGACCTAATCCAGTGTTGCGTCTTACCTCACTGGCTCCTCCATCCAGCTCTTGGCCCATAGATGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| 3UTR CCA 72 bp | AGGCTAGGGCTTTCCGGTTCACAGCCTGGTCTCCCTTaGGGGAAGGGTAACGACTTGAAAAGTGCAGAAGAA | + |
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Preference number: 3 (lower is better) Translates to: RLGLSGSQPGLP*GKGNDLKSAEE Trigger: TTCTTCTGCACTTTTCAAGTCGTTACCCTTCCCCCAAGGGAGACCAGGCTGTGAACCGGAAAGCCCTAGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| 3UTR CCA 72 bp | GAAGAAGGCAGATCACCTTCGTGGACTAAGGCAGAATaGAGAAGCTCAGAAACCCTGCATGTAGCGGGCAGT | + |
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Preference number: 3 (lower is better) Translates to: EEGRSPSWTKAE*RSSETLHVAGS Trigger: ACTGCCCGCTACATGCAGGGTTTCTGAGCTTCTCCATTCTGCCTTAGTCCACGAAGGTGATCTGCCTTCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| 3UTR CCA 72 bp | CTACCATTCTCAAATGCTTGGAGCGAGAGTTTGATGTaGCTGCACCGAGGAGAGTTAAGAGAAGAGCAGCCC | + |
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Preference number: 3 (lower is better) Translates to: LPFSNAWSESLM*LHRGELREEQP Trigger: GGGCTGCTCTTCTCTTAACTCTCCTCGGTGCAGCCACATCAAACTCTCGCTCCAAGCATTTGAGAATGGTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| 3UTR CCA 72 bp | GACTTGAAAAGTGCAGAAGAAGGCAGATCACCTTCGTaGACTAAGGCAGAATGGAGAAGCTCAGAAACCCTG | + |
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Preference number: 3 (lower is better) Translates to: DLKSAEEGRSPS*TKAEWRSSETL Trigger: CAGGGTTTCTGAGCTTCTCCATTCTGCCTTAGTCCACGAAGGTGATCTGCCTTCTTCTGCACTTTTCAAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR CCA 90 bp | CCACTCCAGACGGCTCTGGTCCCCTCCCTTTCCACTAGCACCCACCACCCAGAGCGTCATCCGGGAAGGTaGGCAGGACACCGCGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: PLQTALVPSLSTSTHHPERHPGR*AGHRAA Trigger: CGCTGCGCGGTGTCCTGCCCACCTTCCCGGATGACG...CTCTGGGTGGTGGGTGCTAGTGGAAAGGGAGGGGACCAGAGCCGTCTGGAGTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR CCA 90 bp | CCACTCCAGACGGCTCTGGTCCCCTCCCTTTCCACTAGCACCCACCACCCAGAGCGGGAGCAGATAGGATaGGGAGCTGGGCACCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: PLQTALVPSLSTSTHHPEREQIG*GAGHLQ Trigger: CTGCAGGTGCCCAGCTCCCCATCCTATCTGCTCCCG...CTCTGGGTGGTGGGTGCTAGTGGAAAGGGAGGGGACCAGAGCCGTCTGGAGTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR CCA 90 bp | CACTCCAGACGGCTCTGGTCCCCTCCCTTTCCACTAGCACCCACCACCCAGAGCGTCTCTGGGGACACTTaGATGGTGAGCGCATCCAAG | + |
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Preference number: 4 (lower is better) Translates to: HSRRLWSPPFPLAPTTQSVSGDT*MVSASK Trigger: CTTGGATGCGCTCACCATCCAAGTGTCCCCAGAGAC...GCTCTGGGTGGTGGGTGCTAGTGGAAAGGGAGGGGACCAGAGCCGTCTGGAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR CCA 90 bp | CGAGGAGAGTTAAGAGAAGAGCAGCCCCCAATGTCTGCTGTGCGCAGCAGCAAGGTGCCAACTCGCTCTTaGGCCTGTTGCGCCCTCCGC | + |
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Preference number: 4 (lower is better) Translates to: RGELREEQPPMSAVRSSKVPTRS*ACCALR Trigger: GCGGAGGGCGCAACAGGCCCAAGAGCGAGTTGGCAC...CTTGCTGCTGCGCACAGCAGACATTGGGGGCTGCTCTTCTCTTAACTCTCCTCG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR GCA 90 bp | GAGAGTTTGATGTGGCTGCACCGAGGAGAGTTAAGAGAAGAGCAGCCCCCAATGGGGGAGCTGGGCACCTaGAGGCCAGGGAATTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: ESLMWLHRGELREEQPPMGELGT*RPGNSS Trigger: GGAGGAATTCCCTGGCCTGCAGGTGCCCAGCTCCCC...CATTGGGGGCTGCTCTTCTCTTAACTCTCCTCGGTGCAGCCACATCAAACTCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR CCA 90 bp | CACTCCAGACGGCTCTGGTCCCCTCCCTTTCCACTAGCACCCACCACCCAGAGCAGGTTGTTGTGTCTCTaGGGACACTTGGATGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: HSRRLWSPPFPLAPTTQSRLLCL*GHLDGE Trigger: CTCACCATCCAAGTGTCCCCAGAGACACAACAACCT...GCTCTGGGTGGTGGGTGCTAGTGGAAAGGGAGGGGACCAGAGCCGTCTGGAGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR TCA 90 bp | TTGAGAGCCTCCACTACCTCCCACTCCAGACGGCTCTGGTCCCCTCCCTTTCCATTCTTCGCTGTTTGCTaGGTGCCAACTCGCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: LRASTTSHSRRLWSPPFPFFAVC*VPTRSW Trigger: CCAAGAGCGAGTTGGCACTCAGCAAACAGCGAAGAA...TGGAAAGGGAGGGGACCAGAGCCGTCTGGAGTGGGAGGTAGTGGAGGCTCTCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR CCA 90 bp | GAGCGAGAGTTTGATGTGGCTGCACCGAGGAGAGTTAAGAGAAGAGCAGCCCCCGAGAGTGGGGCTAGGTaGGGTGGAATTGGAACTGAG | + |
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Preference number: 4 (lower is better) Translates to: EREFDVAAPRRVKRRAAPESGAR*GGIGTE Trigger: CTCAGTTCCAATTCCACCCCACCTAGCCCCACTCTC...GGGGGCTGCTCTTCTCTTAACTCTCCTCGGTGCAGCCACATCAAACTCTCGCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR GCA 90 bp | GCGGGCAGTAAAGACGACGAACATCATCTATGGGCCAAGAGCTGGATGGAGGAGGGTTGTGCATGCGATTaGGCTCCCGATCATTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: AGSKDDEHHLWAKSWMEEGCACD*APDHWP Trigger: AGGCCAATGATCGGGAGCGCAATCGCATGCACAACC...CTCCTCCATCCAGCTCTTGGCCCATAGATGATGTTCGTCGTCTTTACTGCCCGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR GCA 90 bp | GCAGTAAAGACGACGAACATCATCTATGGGCCAAGAGCTGGATGGAGGAGCCAGAGCTGTGGTCCGCTATaGGCAGCGTCTGAGTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: AVKTTNIIYGPRAGWRSQSCGPL*AASESV Trigger: CACTGACTCAGACGCTGCGCATAGCGGACCACAGCT...CTGGCTCCTCCATCCAGCTCTTGGCCCATAGATGATGTTCGTCGTCTTTACTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR GCA 90 bp | AAAAGTGCAGAAGAAGGCAGATCACCTTCGTGGACTAAGGCAGAATGGAGAAGCTCGCTGTTTGCTGAGTaGCAACTCGCTCTTGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: KSAEEGRSPSWTKAEWRSSLFAE*QLALGP Trigger: AGGCCCAAGAGCGAGTTGGCACTCAGCAAACAGCGA...GCTTCTCCATTCTGCCTTAGTCCACGAAGGTGATCTGCCTTCTTCTGCACTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS GCA 90 bp | CCGATCATTGGCCTTCTTGCGCCGGCTTCTTCGCTGTTTGCTGAGTaGCAACTCGCTCTTGGGCCTGTTGCGCCCTCCGCGTCGGGCGCG | + |
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Preference number: 5 (lower is better) Translates to: PIIGLLAPASSLFAE*QLALGPVAPSASGA Trigger: CGCGCCCGACGCGGAGGGCGCAACAGGCCCAAGAGCGAGTTGGCACTCAGCAAACAGCGAAGAAGCCGGCGCAAGAAGGCCAATGATCGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS TCA 90 bp | GCTCCCGATCATTGGCCTTCTTGCGCCGGCTTCTTCGCTGTTTGCTaGGTGCCAACTCGCTCTTGGGCCTGTTGCGCCCTCCGCGTCGGG | + |
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Preference number: 5 (lower is better) Translates to: APDHWPSCAGFFAVC*VPTRSWACCALRVG Trigger: CCCGACGCGGAGGGCGCAACAGGCCCAAGAGCGAGTTGGCACTCAGCAAACAGCGAAGAAGCCGGCGCAAGAAGGCCAATGATCGGGAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR CAA 90 bp | TACCTCCCACTCCAGACGGCTCTGGTCCCCTCCCTTTCCACTAGCACCCACCACAGTGCCAACTCGCTCTaGGGCCTGTTGCGCCCTCCG | + |
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Preference number: 5 (lower is better) Translates to: YLPLQTALVPSLSTSTHHSANSL*GLLRPP Trigger: CGGAGGGCGCAACAGGCCCAAGAGCGAGTTGGCACT...GTGGTGGGTGCTAGTGGAAAGGGAGGGGACCAGAGCCGTCTGGAGTGGGAGGTA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS CCA 90 bp | AGTCTGAGAACACCAGTGCTCCCGGGAGCAGATAGGATGGGGAGCTaGGCACCTGCAGGCCAGGGAATTCCTCCAATGAGGCCGTGGGGC | + |
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Preference number: 5 (lower is better) Translates to: SLRTPVLPGADRMGS*APAGQGIPPMRPWG Trigger: GCCCCACGGCCTCATTGGAGGAATTCCCTGGCCTGCAGGTGCCCAGCTCCCCATCCTATCTGCTCCCGGGAGCACTGGTGTTCTCAGACT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR CAA 90 bp | CCACTCCAGACGGCTCTGGTCCCCTCCCTTTCCACTAGCACCCACCACCCAGAGGCTCAGGTTACCCGCTaGGGAGACTGGGGAGTAGAT | + |
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Preference number: 5 (lower is better) Translates to: PLQTALVPSLSTSTHHPEAQVTR*GDWGVD Trigger: ATCTACTCCCCAGTCTCCCAAGCGGGTAACCTGAGC...CTCTGGGTGGTGGGTGCTAGTGGAAAGGGAGGGGACCAGAGCCGTCTGGAGTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS CCA 90 bp | GAGCACTTCGTGGTCCGAGGCTCCGGGAAAAGGTTGTTGTGTCTCTaGGGACACTTGGATGGTGAGCGCATCCAAGGGATGAGGCGCCAT | + |
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Preference number: 5 (lower is better) Translates to: EHFVVRGSGKRLLCL*GHLDGERIQGMRRH Trigger: ATGGCGCCTCATCCCTTGGATGCGCTCACCATCCAAGTGTCCCCAGAGACACAACAACCTTTTCCCGGAGCCTCGGACCACGAAGTGCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR CAA 90 bp | GAGCGAGAGTTTGATGTGGCTGCACCGAGGAGAGTTAAGAGAAGAGCAGCCCCCCGGCTTCTTCGCTGTTaGCTGAGTGCCAACTCGCTC | + |
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Preference number: 5 (lower is better) Translates to: EREFDVAAPRRVKRRAAPRLLRC*LSANSL Trigger: GAGCGAGTTGGCACTCAGCAAACAGCGAAGAAGCCG...GGGGGCTGCTCTTCTCTTAACTCTCCTCGGTGCAGCCACATCAAACTCTCGCTC 58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR CAA 90 bp | GGAGACAAACAGTGCTTCAGGAACCGTCCCTGCAACTCACACTTTAGACACGGGAGCGCCGAGTTGAGGTaGTGCATGCGATTGCGCTCC | + |
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Preference number: 5 (lower is better) Translates to: GDKQCFRNRPCNSHFRHGSAELR*CMRLRS Trigger: GGAGCGCAATCGCATGCACAACCTCAACTCGGCGCT...CCCGTGTCTAAAGTGTGAGTTGCAGGGACGGTTCCTGAAGCACTGTTTGTCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR CAA 90 bp | GAGAGTTTGATGTGGCTGCACCGAGGAGAGTTAAGAGAAGAGCAGCCCCCAATGTGTCTCTGGGGACACTaGGATGGTGAGCGCATCCAA | + |
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Preference number: 5 (lower is better) Translates to: ESLMWLHRGELREEQPPMCLWGH*DGERIQ Trigger: TTGGATGCGCTCACCATCCAAGTGTCCCCAGAGACA...CATTGGGGGCTGCTCTTCTCTTAACTCTCCTCGGTGCAGCCACATCAAACTCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS-3UTR CAA 90 bp | AAAAGTGCAGAAGAAGGCAGATCACCTTCGTGGACTAAGGCAGAATGGAGAAGCCTAGGTGGGGTGGAATaGGAACTGAGCACTTCGTGG | + |
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Preference number: 5 (lower is better) Translates to: KSAEEGRSPSWTKAEWRSLGGVE*ELSTSW Trigger: CCACGAAGTGCTCAGTTCCAATTCCACCCCACCTAG...GCTTCTCCATTCTGCCTTAGTCCACGAAGGTGATCTGCCTTCTTCTGCACTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS CAA 72 bp | CGGCTTCTTCGCTGTTTGCTGAGTGCCAACTCGCTCTaGGGCCTGTTGCGCCCTCCGCGTCGGGCGCGGAGC | + |
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Preference number: 6 (lower is better) Translates to: RLLRCLLSANSL*GLLRPPRRARS Trigger: GCTCCGCGCCCGACGCGGAGGGCGCAACAGGCCCAAGAGCGAGTTGGCACTCAGCAAACAGCGAAGAAGCCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS CAA 90 bp | TTCTTGCGCCGGCTTCTTCGCTGTTTGCTGAGTGCCAACTCGCTCTaGGGCCTGTTGCGCCCTCCGCGTCGGGCGCGGAGCTTCCTCGAG | + |
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Preference number: 6 (lower is better) Translates to: FLRRLLRCLLSANSL*GLLRPPRRARSFLE Trigger: CTCGAGGAAGCTCCGCGCCCGACGCGGAGGGCGCAACAGGCCCAAGAGCGAGTTGGCACTCAGCAAACAGCGAAGAAGCCGGCGCAAGAA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS GCA 72 bp | GGCCTTCTTGCGCCGGCTTCTTCGCTGTTTGCTGAGTaGCAACTCGCTCTTGGGCCTGTTGCGCCCTCCGCG | + |
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Preference number: 6 (lower is better) Translates to: GLLAPASSLFAE*QLALGPVAPSA Trigger: CGCGGAGGGCGCAACAGGCCCAAGAGCGAGTTGGCACTCAGCAAACAGCGAAGAAGCCGGCGCAAGAAGGCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS CCA 72 bp | GCACCTGCAGGCCAGGGAATTCCTCCAATGAGGCCGTaGGGCTCAGGTTACCCGCTTGGGAGACTGGGGAGT | + |
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Preference number: 6 (lower is better) Translates to: APAGQGIPPMRP*GSGYPLGRLGS Trigger: ACTCCCCAGTCTCCCAAGCGGGTAACCTGAGCCCCACGGCCTCATTGGAGGAATTCCCTGGCCTGCAGGTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS GCA 72 bp | GAGCTTCCTCGAGGTCCCTCGGCAGTCACCCACTTCTaGTTCGGAGCAGTCCCTAGGTATGAGAGTGGGGCT | + |
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Preference number: 6 (lower is better) Translates to: ELPRGPSAVTHF*FGAVPRYESGA Trigger: AGCCCCACTCTCATACCTAGGGACTGCTCCGAAGCAGAAGTGGGTGACTGCCGAGGGACCTCGAGGAAGCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS CAA 72 bp | TCCCTAGGTATGAGAGTGGGGCTAGGTGGGGTGGAATaGGAACTGAGCACTTCGTGGTCCGAGGCTCCGGGA | + |
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Preference number: 6 (lower is better) Translates to: SLGMRVGLGGVE*ELSTSWSEAPG Trigger: TCCCGGAGCCTCGGACCACGAAGTGCTCAGTTCCAATTCCACCCCACCTAGCCCCACTCTCATACCTAGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS CAA 72 bp | CGATCATTGGCCTTCTTGCGCCGGCTTCTTCGCTGTTaGCTGAGTGCCAACTCGCTCTTGGGCCTGTTGCGC | + |
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Preference number: 6 (lower is better) Translates to: RSLAFLRRLLRC*LSANSLLGLLR Trigger: GCGCAACAGGCCCAAGAGCGAGTTGGCACTCAGCAAACAGCGAAGAAGCCGGCGCAAGAAGGCCAATGATCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS CCA 72 bp | GTGGTCCGAGGCTCCGGGAAAAGGTTGTTGTGTCTCTaGGGACACTTGGATGGTGAGCGCATCCAAGGGATG | + |
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Preference number: 6 (lower is better) Translates to: VVRGSGKRLLCL*GHLDGERIQGM Trigger: CATCCCTTGGATGCGCTCACCATCCAAGTGTCCCCAGAGACACAACAACCTTTTCCCGGAGCCTCGGACCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS CAA 72 bp | GGCTCCGGGAAAAGGTTGTTGTGTCTCTGGGGACACTaGGATGGTGAGCGCATCCAAGGGATGAGGCGCCAT | + |
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Preference number: 6 (lower is better) Translates to: GSGKRLLCLWGH*DGERIQGMRRH Trigger: ATGGCGCCTCATCCCTTGGATGCGCTCACCATCCAAGTGTCCCCAGAGACACAACAACCTTTTCCCGGAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS CCA 72 bp | GGGCTAGGTGGGGTGGAATTGGAACTGAGCACTTCGTaGTCCGAGGCTCCGGGAAAAGGTTGTTGTGTCTCT | + |
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Preference number: 6 (lower is better) Translates to: GLGGVELELSTS*SEAPGKGCCVS Trigger: AGAGACACAACAACCTTTTCCCGGAGCCTCGGACCACGAAGTGCTCAGTTCCAATTCCACCCCACCTAGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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| CDS CCA 72 bp | TTCGGAGCAGTCCCTAGGTATGAGAGTGGGGCTAGGTaGGGTGGAATTGGAACTGAGCACTTCGTGGTCCGA | + |
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Preference number: 6 (lower is better) Translates to: FGAVPRYESGAR*GGIGTEHFVVR Trigger: TCGGACCACGAAGTGCTCAGTTCCAATTCCACCCCACCTAGCCCCACTCTCATACCTAGGGACTGCTCCGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050103.2 |
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