Pregenerated sensors for NEUROG2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027967Ensembl transcript IDs: ENSMUST00000029587.9
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACAGGGACCAGTTGCATTCCCTCTGAGAGATTCACACGAACTGCCTaGCCGGAGTTCTCCTCCAGCAGCTCTGAGAGAGGGGAGGAGCGT | + |
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Preference number: 1 (lower is better) Translates to: TGTSCIPSERFTRTA*PEFSSSSSERGEER Trigger: ACGCTCCTCCCCTCTCTCAGAGCTGCTGGAGGAGAACTCCGGGCAGGCAGTTCGTGTGAATCTCTCAGAGGGAATGCAACTGGTCCCTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| 3UTR TCA 90 bp | GAGATTCACACGAACTGCCTGCCCGGAGTTCTCCTCCAGCAGCTCTaGGAGAGGGGAGGAGCGTCAGTCTGCTCTGCACACTCGTTAGTT | + |
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Preference number: 1 (lower is better) Translates to: EIHTNCLPGVLLQQL*ERGGASVCSAHSLV Trigger: AACTAACGAGTGTGCAGAGCAGACTGACGCTCCTCCCCTCTCTCAGAGCTGCTGGAGGAGAACTCCGGGCAGGCAGTTCGTGTGAATCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| 3UTR GCA 90 bp | ACATCTCTATGTAGAAACGAAGGTGAAAAGATCACAGGGACCAGTTaGATTCCCTCTGAGAGATTCACACGAACTGCCTGCCCGGAGTTC | + |
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Preference number: 1 (lower is better) Translates to: TSLCRNEGEKITGTS*IPSERFTRTACPEF Trigger: GAACTCCGGGCAGGCAGTTCGTGTGAATCTCTCAGAGGGAATGCAACTGGTCCCTGTGATCTTTTCACCTTCGTTTCTACATAGAGATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| 3UTR-3UTR CCA 90 bp | TGGCTGATCCTGGCAATGCCCCGTGTCTGCTTAGGTTTTCAGACTGTTGATTTAGTGGAGTCCGGGGCGTaGAGGGTGAGGGGCGGGAGA | + |
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Preference number: 2 (lower is better) Translates to: WLILAMPRVCLGFQTVDLVESGA*RVRGGR Trigger: TCTCCCGCCCCTCACCCTCCACGCCCCGGACTCCAC...TAAATCAACAGTCTGAAAACCTAAGCAGACACGGGGCATTGCCAGGATCAGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| 3UTR-3UTR TCA 90 bp | GAAAAGATCACAGGGACCAGTTGCATTCCCTCTGAGAGATTCACACGAACTGCCGCCACCTCTGCTCTGTaGAGTGGAGTCCGGGGCGTG | + |
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Preference number: 2 (lower is better) Translates to: EKITGTSCIPSERFTRTAATSAL*SGVRGV Trigger: CACGCCCCGGACTCCACTTCACAGAGCAGAGGTGGC...GGCAGTTCGTGTGAATCTCTCAGAGGGAATGCAACTGGTCCCTGTGATCTTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| 3UTR-3UTR CCA 90 bp | GAAGGTGAAAAGATCACAGGGACCAGTTGCATTCCCTCTGAGAGATTCACACGAGGGGCGGGAGAAGGATaGGAAGAGGGCCGGGTAGAG | + |
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Preference number: 2 (lower is better) Translates to: EGEKITGTSCIPSERFTRGAGEG*EEGRVE Trigger: CTCTACCCGGCCCTCTTCCCATCCTTCTCCCGCCCC...TCGTGTGAATCTCTCAGAGGGAATGCAACTGGTCCCTGTGATCTTTTCACCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| 3UTR-3UTR TCA 90 bp | TGGCTGATCCTGGCAATGCCCCGTGTCTGCTTAGGTTTTCAGACTGTTGATTTACTACAAATTATACAATaGCTTCTAACCTGGCCCTCT | + |
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Preference number: 2 (lower is better) Translates to: WLILAMPRVCLGFQTVDLLQIIQ*LLTWPS Trigger: AGAGGGCCAGGTTAGAAGTCATTGTATAATTTGTAG...TAAATCAACAGTCTGAAAACCTAAGCAGACACGGGGCATTGCCAGGATCAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| 3UTR-3UTR GCA 90 bp | ATTCAGCCTAAATTTCCACGCTTGCATTCAACCCTTACAAAAGCCTACAAATTAGGAGGAGCGTCAGTCTaGTCTGCACACTCGTTAGTT | + |
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Preference number: 2 (lower is better) Translates to: IQPKFPRLHSTLTKAYKLGGASV*SAHSLV Trigger: AACTAACGAGTGTGCAGAGCAGACTGACGCTCCTCC...TAATTTGTAGGCTTTTGTAAGGGTTGAATGCAAGCGTGGAAATTTAGGCTGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| 3UTR-3UTR TCA 90 bp | ATTCAGCCTAAATTTCCACGCTTGCATTCAACCCTTACAAAAGCCTACAAATTACAGTTGCATTCCCTCTaGGAGATTCACACGAACTGC | + |
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Preference number: 2 (lower is better) Translates to: IQPKFPRLHSTLTKAYKLQLHSL*EIHTNC Trigger: GCAGTTCGTGTGAATCTCTCAGAGGGAATGCAACTG...TAATTTGTAGGCTTTTGTAAGGGTTGAATGCAAGCGTGGAAATTTAGGCTGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| 3UTR TCA 72 bp | ACGAACTGCCTGCCCGGAGTTCTCCTCCAGCAGCTCTaGGAGAGGGGAGGAGCGTCAGTCTGCTCTGCACAC | + |
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Preference number: 3 (lower is better) Translates to: TNCLPGVLLQQL*ERGGASVCSAH Trigger: GTGTGCAGAGCAGACTGACGCTCCTCCCCTCTCTCAGAGCTGCTGGAGGAGAACTCCGGGCAGGCAGTTCGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| 3UTR GCA 72 bp | AGTTGCATTCCCTCTGAGAGATTCACACGAACTGCCTaGCCGGAGTTCTCCTCCAGCAGCTCTGAGAGAGGG | + |
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Preference number: 3 (lower is better) Translates to: SCIPSERFTRTA*PEFSSSSSERG Trigger: CCCTCTCTCAGAGCTGCTGGAGGAGAACTCCGGGCAGGCAGTTCGTGTGAATCTCTCAGAGGGAATGCAACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| 3UTR TCA 72 bp | AGTGCACATCAGAGAGGGAAAGTTTGGTTTGACAGGTaGAATTCCCACAGCCTGCAGACAGCAATGGGAATA | + |
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Preference number: 3 (lower is better) Translates to: SAHQRGKVWFDR*NSHSLQTAMGI Trigger: TATTCCCATTGCTGTCTGCAGGCTGTGGGAATTTCACCTGTCAAACCAAACTTTCCCTCTCTGATGTGCACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR GCA 90 bp | AGGGGATTGCAAGGGCCACCTCTGCTCTGTGAAGTGGAGTCCGGGGCGTGGAGGCGACGCTTGCACTCGTaGATCAGGCCCAGCAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: RGLQGPPLLCEVESGAWRRRLHS*IRPSSR Trigger: GCGGCTGCTGGGCCTGATGCACGAGTGCAAGCGTCG...CCTCCACGCCCCGGACTCCACTTCACAGAGCAGAGGTGGCCCTTGCAATCCCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR TCA 90 bp | TCACAGGGACCAGTTGCATTCCCTCTGAGAGATTCACACGAACTGCCTGCCCGGGCCTGCGGGTCTTCTTaGTGCGCTGCACCGTCTCCG | + |
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Preference number: 4 (lower is better) Translates to: SQGPVAFPLRDSHELPARACGSS*CAAPSP Trigger: CGGAGACGGTGCAGCGCATCAAGAAGACCCGCAGGC...CCGGGCAGGCAGTTCGTGTGAATCTCTCAGAGGGAATGCAACTGGTCCCTGTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR TCA 90 bp | TCACAGGGACCAGTTGCATTCCCTCTGAGAGATTCACACGAACTGCCTGCCCGGGCGTCTCGATCTTCGTaGGCTTGGCATCCTCGGGGA | + |
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Preference number: 4 (lower is better) Translates to: SQGPVAFPLRDSHELPARASRSS*AWHPRG Trigger: TCCCCGAGGATGCCAAGCTCACGAAGATCGAGACGC...CCGGGCAGGCAGTTCGTGTGAATCTCTCAGAGGGAATGCAACTGGTCCCTGTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR CCA 90 bp | GAGGGGAGGAGCGTCAGTCTGCTCTGCACACTCGTTAGTTATGGTACTTTTTCTCCGTCTCCGCCGTCTTaGCACCTCGGGAGACGGCCC | + |
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Preference number: 4 (lower is better) Translates to: EGRSVSLLCTLVSYGTFSPSPPS*HLGRRP Trigger: GGGCCGTCTCCCGAGGTGCCAAGACGGCGGAGACGG...AGAAAAAGTACCATAACTAACGAGTGTGCAGAGCAGACTGACGCTCCTCCCCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR CCA 90 bp | GAAAAGATCACAGGGACCAGTTGCATTCCCTCTGAGAGATTCACACGAACTGCCGCTCCAGGAGGAAGGTaGAGAAGGGCTGTCCCCGCT | + |
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Preference number: 4 (lower is better) Translates to: EKITGTSCIPSERFTRTAAPGGR*RRAVPA Trigger: AGCGGGGACAGCCCTTCTCCACCTTCCTCCTGGAGC...GGCAGTTCGTGTGAATCTCTCAGAGGGAATGCAACTGGTCCCTGTGATCTTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR TCA 90 bp | GAAGGTGAAAAGATCACAGGGACCAGTTGCATTCCCTCTGAGAGATTCACACGACGTGGAGTTGGAGGATaGCGCCGGGCTGTTGGTGCA | + |
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Preference number: 4 (lower is better) Translates to: EGEKITGTSCIPSERFTRRGVGG*RRAVGA Trigger: TGCACCAACAGCCCGGCGTCATCCTCCAACTCCACG...TCGTGTGAATCTCTCAGAGGGAATGCAACTGGTCCCTGTGATCTTTTCACCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR CCA 90 bp | TGGCTGATCCTGGCAATGCCCCGTGTCTGCTTAGGTTTTCAGACTGTTGATTTAATGACGCCGGGCTGTTaGTGCAGCTCCAGGAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: WLILAMPRVCLGFQTVDLMTPGC*CSSRRK Trigger: CTTCCTCCTGGAGCTGCACCAACAGCCCGGCGTCAT...TAAATCAACAGTCTGAAAACCTAAGCAGACACGGGGCATTGCCAGGATCAGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR TCA 90 bp | TTCTTTCGACTGACATTAACATCTCTATGTAGAAACGAAGGTGAAAAGATCACAGGAGCACCGCCTCCGTaGAGAGCGCCCCCTGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: FFRLTLTSLCRNEGEKITGAPPP*RAPPGG Trigger: GCCTCCAGGGGGCGCTCTTCACGGAGGCGGTGCTCC...TGTGATCTTTTCACCTTCGTTTCTACATAGAGATGTTAATGTCAGTCGAAAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR CCA 90 bp | TCTGCACACTCGTTAGTTATGGTACTTTTTCTCAGTGTCTTTTACAGTCTTACGCATCCTCGGGGAAGGTaGGCAGCACCTCGCGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: SAHSLVMVLFLSVFYSLTHPRGR*AAPRAA Trigger: CGCTGCGCGAGGTGCTGCCCACCTTCCCCGAGGATG...CGTAAGACTGTAAAAGACACTGAGAAAAAGTACCATAACTAACGAGTGTGCAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR CCA 90 bp | TTCTTTCGACTGACATTAACATCTCTATGTAGAAACGAAGGTGAAAAGATCACACCTCCTCGTCCGCGCTaGAGGACATCGGGGTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: FFRLTLTSLCRNEGEKITPPRPR*RTSGSG Trigger: CCCTGACCCCGATGTCCTCCAGCGCGGACGAGGAGG...TGTGATCTTTTCACCTTCGTTTCTACATAGAGATGTTAATGTCAGTCGAAAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR CCA 90 bp | TCTGCACACTCGTTAGTTATGGTACTTTTTCTCAGTGTCTTTTACAGTCTTACGATGCTTCTCCGGAGGTaGGGGCTGCCAGTAGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: SAHSLVMVLFLSVFYSLTMLLRR*GLPVVH Trigger: GTGGACTACTGGCAGCCCCCACCTCCGGAGAAGCAT...CGTAAGACTGTAAAAGACACTGAGAAAAAGTACCATAACTAACGAGTGTGCAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR GCA 90 bp | ATTCAGCCTAAATTTCCACGCTTGCATTCAACCCTTACAAAAGCCTACAAATTAGTCTTCTTGATGCGCTaGACCGTCTCCGCCGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: IQPKFPRLHSTLTKAYKLVFLMR*TVSAVL Trigger: CAAGACGGCGGAGACGGTGCAGCGCATCAAGAAGAC...TAATTTGTAGGCTTTTGTAAGGGTTGAATGCAAGCGTGGAAATTTAGGCTGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS CCA 90 bp | CGACGGGCGACGCTTGCACTCGTGCATCAGGCCCAGCAGCCGCCCTaGCCGGCAACCCCCGGCACCCGACGCCGGACTGCCCTGCACCCC | + |
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Preference number: 5 (lower is better) Translates to: RRATLALVHQAQQPP*PATPGTRRRTALHP Trigger: GGGGTGCAGGGCAGTCCGGCGTCGGGTGCCGGGGGTTGCCGGCCAGGGCGGCTGCTGGGCCTGATGCACGAGTGCAAGCGTCGCCCGTCG 77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS CCA 90 bp | GCAGCTCCCGGGCTCAGGAGCACCGCCTCCGTGAAGAGCGCCCCCTaGAGGCCACCGGCGCCGGCGCAGTGGTCCGCCAGGCGCAGAGTC | + |
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Preference number: 5 (lower is better) Translates to: AAPGLRSTASVKSAP*RPPAPAQWSARRRV Trigger: GACTCTGCGCCTGGCGGACCACTGCGCCGGCGCCGGTGGCCTCCAGGGGGCGCTCTTCACGGAGGCGGTGCTCCTGAGCCCGGGAGCTGC 77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS TCA 90 bp | GCGCTGCACCGTCTCCGCCGTCTTGGCACCTCGGGAGACGGCCCGTaGGCGCGACGGGCGACGCTTGCACTCGTGCATCAGGCCCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: ALHRLRRLGTSGDGP*ARRATLALVHQAQQ Trigger: CTGCTGGGCCTGATGCACGAGTGCAAGCGTCGCCCGTCGCGCTCACGGGCCGTCTCCCGAGGTGCCAAGACGGCGGAGACGGTGCAGCGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS GCA 90 bp | CGCTCGCGGTTGTTGGCCTTGAGCCTGCGGGTCTTCTTGATGCGCTaGACCGTCTCCGCCGTCTTGGCACCTCGGGAGACGGCCCGTGAG | + |
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Preference number: 5 (lower is better) Translates to: RSRLLALSLRVFLMR*TVSAVLAPRETARE Trigger: CTCACGGGCCGTCTCCCGAGGTGCCAAGACGGCGGAGACGGTGCAGCGCATCAAGAAGACCCGCAGGCTCAAGGCCAACAACCGCGAGCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS GCA 90 bp | AGCTGTATGGGGACGTGGAGTTGGAGGATGACGCCGGGCTGTTGGTaGAGCTCCAGGAGGAAGGTGGAGAAGGGCTGTCCCCGCTGGCGC | + |
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Preference number: 5 (lower is better) Translates to: SCMGTWSWRMTPGCW*SSRRKVEKGCPRWR Trigger: GCGCCAGCGGGGACAGCCCTTCTCCACCTTCCTCCTGGAGCTGCACCAACAGCCCGGCGTCATCCTCCAACTCCACGTCCCCATACAGCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR CAA 90 bp | CTGCCTGCCCGGAGTTCTCCTCCAGCAGCTCTGAGAGAGGGGAGGAGCGTCAGTTTGCGCTCGCGGTTGTaGGCCTTGAGCCTGCGGGTC | + |
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Preference number: 5 (lower is better) Translates to: LPARSSPPAALREGRSVSLRSRL*ALSLRV Trigger: GACCCGCAGGCTCAAGGCCAACAACCGCGAGCGCAA...ACTGACGCTCCTCCCCTCTCTCAGAGCTGCTGGAGGAGAACTCCGGGCAGGCAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR CAA 90 bp | AGGGGATTGCAAGGGCCACCTCTGCTCTGTGAAGTGGAGTCCGGGGCGTGGAGGTCGCGGTTGTTGGCCTaGAGCCTGCGGGTCTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: RGLQGPPLLCEVESGAWRSRLLA*SLRVFL Trigger: CAAGAAGACCCGCAGGCTCAAGGCCAACAACCGCGA...CCTCCACGCCCCGGACTCCACTTCACAGAGCAGAGGTGGCCCTTGCAATCCCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR CAA 90 bp | GAAAAGATCACAGGGACCAGTTGCATTCCCTCTGAGAGATTCACACGAACTGCCACCGTCTCCGCCGTCTaGGCACCTCGGGAGACGGCC | + |
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Preference number: 5 (lower is better) Translates to: EKITGTSCIPSERFTRTATVSAV*APRETA Trigger: GGCCGTCTCCCGAGGTGCCAAGACGGCGGAGACGGT...GGCAGTTCGTGTGAATCTCTCAGAGGGAATGCAACTGGTCCCTGTGATCTTTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR CAA 90 bp | GAAAAGATCACAGGGACCAGTTGCATTCCCTCTGAGAGATTCACACGAACTGCCAGCCTGCGGGTCTTCTaGATGCGCTGCACCGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: EKITGTSCIPSERFTRTASLRVF*MRCTVS Trigger: GGAGACGGTGCAGCGCATCAAGAAGACCCGCAGGCT...GGCAGTTCGTGTGAATCTCTCAGAGGGAATGCAACTGGTCCCTGTGATCTTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR CAA 90 bp | TGGCTGATCCTGGCAATGCCCCGTGTCTGCTTAGGTTTTCAGACTGTTGATTTAGATGACGCCGGGCTGTaGGTGCAGCTCCAGGAGGAA | + |
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Preference number: 5 (lower is better) Translates to: WLILAMPRVCLGFQTVDLDDAGL*VQLQEE Trigger: TTCCTCCTGGAGCTGCACCAACAGCCCGGCGTCATC...TAAATCAACAGTCTGAAAACCTAAGCAGACACGGGGCATTGCCAGGATCAGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR CAA 90 bp | GAGGGGAGGAGCGTCAGTCTGCTCTGCACACTCGTTAGTTATGGTACTTTTTCTTCGATCTTCGTGAGCTaGGCATCCTCGGGGAAGGTG | + |
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Preference number: 5 (lower is better) Translates to: EGRSVSLLCTLVSYGTFSSIFVS*ASSGKV Trigger: CACCTTCCCCGAGGATGCCAAGCTCACGAAGATCGA...AGAAAAAGTACCATAACTAACGAGTGTGCAGAGCAGACTGACGCTCCTCCCCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS-3UTR CAA 90 bp | TCTGCACACTCGTTAGTTATGGTACTTTTTCTCAGTGTCTTTTACAGTCTTACGCGGTTGCGCTCGCGGTaGTTGGCCTTGAGCCTGCGG | + |
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Preference number: 5 (lower is better) Translates to: SAHSLVMVLFLSVFYSLTRLRSR*LALSLR Trigger: CCGCAGGCTCAAGGCCAACAACCGCGAGCGCAACCG...CGTAAGACTGTAAAAGACACTGAGAAAAAGTACCATAACTAACGAGTGTGCAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS TCA 72 bp | CGAGCGCAGCTCCCGGGCTCAGGAGCACCGCCTCCGTaGAGAGCGCCCCCTGGAGGCCACCGGCGCCGGCGC | + |
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Preference number: 6 (lower is better) Translates to: RAQLPGSGAPPP*RAPPGGHRRRR Trigger: GCGCCGGCGCCGGTGGCCTCCAGGGGGCGCTCTTCACGGAGGCGGTGCTCCTGAGCCCGGGAGCTGCGCTCG 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS GCA 72 bp | GGCCGGCAACCCCCGGCACCCGACGCCGGACTGCCCTaGACCCCCTGCCCGGCTTCCGCTCCACGCTGCCCA | + |
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Preference number: 6 (lower is better) Translates to: GRQPPAPDAGLP*TPCPASAPRCP Trigger: TGGGCAGCGTGGAGCGGAAGCCGGGCAGGGGGTGCAGGGCAGTCCGGCGTCGGGTGCCGGGGGTTGCCGGCC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS GCA 72 bp | GCCCTGGCCGGCAACCCCCGGCACCCGACGCCGGACTaGCCTGCACCCCCTGCCCGGCTTCCGCTCCACGCT | + |
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Preference number: 6 (lower is better) Translates to: ALAGNPRHPTPD*PAPPARLPLHA Trigger: AGCGTGGAGCGGAAGCCGGGCAGGGGGTGCAGGGCAGTCCGGCGTCGGGTGCCGGGGGTTGCCGGCCAGGGC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS GCA 72 bp | CTCGGGAGACGGCCCGTGAGCGCGACGGGCGACGCTTaGACTCGTGCATCAGGCCCAGCAGCCGCCCTGGCC | + |
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Preference number: 6 (lower is better) Translates to: LGRRPVSATGDA*TRASGPAAALA Trigger: GGCCAGGGCGGCTGCTGGGCCTGATGCACGAGTGCAAGCGTCGCCCGTCGCGCTCACGGGCCGTCTCCCGAG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS CAA 72 bp | CCTCGGGAGACGGCCCGTGAGCGCGACGGGCGACGCTaGCACTCGTGCATCAGGCCCAGCAGCCGCCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: PRETARERDGRR*HSCIRPSSRPG Trigger: GCCAGGGCGGCTGCTGGGCCTGATGCACGAGTGCAAGCGTCGCCCGTCGCGCTCACGGGCCGTCTCCCGAGG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS CCA 72 bp | AGCTCCAGGAGGAAGGTGGAGAAGGGCTGTCCCCGCTaGCGCCGAGCGCAGCTCCCGGGCTCAGGAGCACCG | + |
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Preference number: 6 (lower is better) Translates to: SSRRKVEKGCPR*RRAQLPGSGAP Trigger: CGGTGCTCCTGAGCCCGGGAGCTGCGCTCGGCGCCAGCGGGGACAGCCCTTCTCCACCTTCCTCCTGGAGCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS TCA 72 bp | CGTCTCCGCCGTCTTGGCACCTCGGGAGACGGCCCGTaGGCGCGACGGGCGACGCTTGCACTCGTGCATCAG | + |
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Preference number: 6 (lower is better) Translates to: RLRRLGTSGDGP*ARRATLALVHQ Trigger: CTGATGCACGAGTGCAAGCGTCGCCCGTCGCGCTCACGGGCCGTCTCCCGAGGTGCCAAGACGGCGGAGACG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS CAA 72 bp | CGGGTCTTCTTGATGCGCTGCACCGTCTCCGCCGTCTaGGCACCTCGGGAGACGGCCCGTGAGCGCGACGGG | + |
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Preference number: 6 (lower is better) Translates to: RVFLMRCTVSAV*APRETARERDG Trigger: CCCGTCGCGCTCACGGGCCGTCTCCCGAGGTGCCAAGACGGCGGAGACGGTGCAGCGCATCAAGAAGACCCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS CAA 90 bp | TTGAGCCTGCGGGTCTTCTTGATGCGCTGCACCGTCTCCGCCGTCTaGGCACCTCGGGAGACGGCCCGTGAGCGCGACGGGCGACGCTTG | + |
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Preference number: 6 (lower is better) Translates to: LSLRVFLMRCTVSAV*APRETARERDGRRL Trigger: CAAGCGTCGCCCGTCGCGCTCACGGGCCGTCTCCCGAGGTGCCAAGACGGCGGAGACGGTGCAGCGCATCAAGAAGACCCGCAGGCTCAA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS CAA 72 bp | CGCTCGCGGTTGTTGGCCTTGAGCCTGCGGGTCTTCTaGATGCGCTGCACCGTCTCCGCCGTCTTGGCACCT | + |
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Preference number: 6 (lower is better) Translates to: RSRLLALSLRVF*MRCTVSAVLAP Trigger: AGGTGCCAAGACGGCGGAGACGGTGCAGCGCATCAAGAAGACCCGCAGGCTCAAGGCCAACAACCGCGAGCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS GCA 72 bp | TTGTTGGCCTTGAGCCTGCGGGTCTTCTTGATGCGCTaGACCGTCTCCGCCGTCTTGGCACCTCGGGAGACG | + |
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Preference number: 6 (lower is better) Translates to: LLALSLRVFLMR*TVSAVLAPRET Trigger: CGTCTCCCGAGGTGCCAAGACGGCGGAGACGGTGCAGCGCATCAAGAAGACCCGCAGGCTCAAGGCCAACAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS CCA 72 bp | CGGGCGATAAAGTGCAGCTGTATGGGGACGTGGAGTTaGAGGATGACGCCGGGCTGTTGGTGCAGCTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: RAIKCSCMGTWS*RMTPGCWCSSR Trigger: CCTGGAGCTGCACCAACAGCCCGGCGTCATCCTCCAACTCCACGTCCCCATACAGCTGCACTTTATCGCCCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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| CDS CAA 72 bp | GCGGGCGATAAAGTGCAGCTGTATGGGGACGTGGAGTaGGAGGATGACGCCGGGCTGTTGGTGCAGCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: AGDKVQLYGDVE*EDDAGLLVQLQ Trigger: CTGGAGCTGCACCAACAGCCCGGCGTCATCCTCCAACTCCACGTCCCCATACAGCTGCACTTTATCGCCCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029587.9 |
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