Pregenerated sensors for NEUROG1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048904Ensembl transcript IDs: ENSMUST00000058475.6
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AATAGCTATGCTAGCACTCAGGTTCTTCCTGGAGCAAGCCCACAGTaGCGGGGGTCGGGATCCATAATGCATGAAGCCCACTCCTTGTGG | + |
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Preference number: 1 (lower is better) Translates to: NSYASTQVLPGASPQ*RGSGSIMHEAHSLW Trigger: CCACAAGGAGTGGGCTTCATGCATTATGGATCCCGACCCCCGCCACTGTGGGCTTGCTCCAGGAAGAACCTGAGTGCTAGCATAGCTATT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| 3UTR CCA 90 bp | CAGTGGCGGGGGTCGGGATCCATAATGCATGAAGCCCACTCCTTGTaGCTCCTTTTTAAGCCTTGCCATTGTATTGTCAGCCGGCTCAAA | + |
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Preference number: 1 (lower is better) Translates to: QWRGSGSIMHEAHSL*LLFKPCHCIVSRLK Trigger: TTTGAGCCGGCTGACAATACAATGGCAAGGCTTAAAAAGGAGCCACAAGGAGTGGGCTTCATGCATTATGGATCCCGACCCCCGCCACTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| 3UTR GCA 90 bp | TCCATAATGCATGAAGCCCACTCCTTGTGGCTCCTTTTTAAGCCTTaGCATTGTATTGTCAGCCGGCTCAAACCGAATTTTCATGCTCGT | + |
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Preference number: 1 (lower is better) Translates to: SIMHEAHSLWLLFKP*HCIVSRLKPNFHAR Trigger: ACGAGCATGAAAATTCGGTTTGAGCCGGCTGACAATACAATGGCAAGGCTTAAAAAGGAGCCACAAGGAGTGGGCTTCATGCATTATGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| 3UTR-3UTR CCA 90 bp | CCTGGAGCAAGCCCACAGTGGCGGGGGTCGGGATCCATAATGCATGAAGCCCACACCACACTGAAGTGGTaGCTGGGGTCAGTTCTGAGC | + |
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Preference number: 2 (lower is better) Translates to: PGASPQWRGSGSIMHEAHTTLKW*LGSVLS Trigger: GCTCAGAACTGACCCCAGCCACCACTTCAGTGTGGT...GTGGGCTTCATGCATTATGGATCCCGACCCCCGCCACTGTGGGCTTGCTCCAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| 3UTR-3UTR TCA 90 bp | AGCCCACAGTGGCGGGGGTCGGGATCCATAATGCATGAAGCCCACTCCTTGTGGGGCTGGGGTCAGTTCTaGGCCAGTCACAAAGAAGGT | + |
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Preference number: 2 (lower is better) Translates to: SPQWRGSGSIMHEAHSLWGWGQF*ASHKEG Trigger: ACCTTCTTTGTGACTGGCTCAGAACTGACCCCAGCC...CCACAAGGAGTGGGCTTCATGCATTATGGATCCCGACCCCCGCCACTGTGGGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| 3UTR CAA 90 bp | CCACAGTGGCGGGGGTCGGGATCCATAATGCATGAAGCCCACTCCTaGTGGCTCCTTTTTAAGCCTTGCCATTGTATTGTCAGCCGGCTC | + |
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Preference number: 2 (lower is better) Translates to: PQWRGSGSIMHEAHS*WLLFKPCHCIVSRL Trigger: GAGCCGGCTGACAATACAATGGCAAGGCTTAAAAAGGAGCCACAAGGAGTGGGCTTCATGCATTATGGATCCCGACCCCCGCCACTGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| 3UTR-3UTR CCA 90 bp | GCCCACTCCTTGTGGCTCCTTTTTAAGCCTTGCCATTGTATTGTCAGCCGGCTCCAGCAACCTAACAAGTaGTCAGGTATTCCCCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: AHSLWLLFKPCHCIVSRLQQPNK*SGIPPP Trigger: GGGAGGGGGAATACCTGACCACTTGTTAGGTTGCTG...GAGCCGGCTGACAATACAATGGCAAGGCTTAAAAAGGAGCCACAAGGAGTGGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| 3UTR-3UTR CCA 90 bp | CGGGGGTCGGGATCCATAATGCATGAAGCCCACTCCTTGTGGCTCCTTTTTAAGTTATTGCTCTTAGACTaGGGGAGGAAGAAAGTATTG | + |
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Preference number: 2 (lower is better) Translates to: RGSGSIMHEAHSLWLLFKLLLLD*GRKKVL Trigger: CAATACTTTCTTCCTCCCCCAGTCTAAGAGCAATAA...CTTAAAAAGGAGCCACAAGGAGTGGGCTTCATGCATTATGGATCCCGACCCCCG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| 3UTR CCA 72 bp | GCTAGCACTCAGGTTCTTCCTGGAGCAAGCCCACAGTaGCGGGGGTCGGGATCCATAATGCATGAAGCCCAC | + |
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Preference number: 3 (lower is better) Translates to: ASTQVLPGASPQ*RGSGSIMHEAH Trigger: GTGGGCTTCATGCATTATGGATCCCGACCCCCGCCACTGTGGGCTTGCTCCAGGAAGAACCTGAGTGCTAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| 3UTR CCA 72 bp | GGGTCGGGATCCATAATGCATGAAGCCCACTCCTTGTaGCTCCTTTTTAAGCCTTGCCATTGTATTGTCAGC | + |
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Preference number: 3 (lower is better) Translates to: GSGSIMHEAHSL*LLFKPCHCIVS Trigger: GCTGACAATACAATGGCAAGGCTTAAAAAGGAGCCACAAGGAGTGGGCTTCATGCATTATGGATCCCGACCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| 3UTR-3UTR CAA 90 bp | TTCACCTCGTCTTCAGGGGCTCATCTGTCCCTTTTCCAAACCACACTGAAGTGGGGGAGGAAGAAAGTATaGATGTTGCCTTACAAAGGC | + |
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Preference number: 3 (lower is better) Translates to: FTSSSGAHLSLFQTTLKWGRKKV*MLPYKG Trigger: GCCTTTGTAAGGCAACATCAATACTTTCTTCCTCCC...CCACTTCAGTGTGGTTTGGAAAAGGGACAGATGAGCCCCTGAAGACGAGGTGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| 3UTR GCA 72 bp | CATGAAGCCCACTCCTTGTGGCTCCTTTTTAAGCCTTaGCATTGTATTGTCAGCCGGCTCAAACCGAATTTT | + |
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Preference number: 3 (lower is better) Translates to: HEAHSLWLLFKP*HCIVSRLKPNF Trigger: AAAATTCGGTTTGAGCCGGCTGACAATACAATGGCAAGGCTTAAAAAGGAGCCACAAGGAGTGGGCTTCATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| 3UTR CCA 72 bp | CTTCAGCCAGTTCCCCATCTATTATTGCTCTTAGACTaGGGGAGGAAGAAAGTATTGATGTTGCCTTACAAA | + |
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Preference number: 3 (lower is better) Translates to: LQPVPHLLLLLD*GRKKVLMLPYK Trigger: TTTGTAAGGCAACATCAATACTTTCTTCCTCCCCCAGTCTAAGAGCAATAATAGATGGGGAACTGGCTGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR GCA 90 bp | CCTGGAGCAAGCCCACAGTGGCGGGGGTCGGGATCCATAATGCATGAAGCCCACACGAGGGCAGCACGCTaGGCAAGGCGTCCAGCGCAG | + |
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Preference number: 4 (lower is better) Translates to: PGASPQWRGSGSIMHEAHTRAAR*ARRPAQ Trigger: CTGCGCTGGACGCCTTGCGCAGCGTGCTGCCCTCGT...GTGGGCTTCATGCATTATGGATCCCGACCCCCGCCACTGTGGGCTTGCTCCAGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR CCA 90 bp | AGCCCACAGTGGCGGGGGTCGGGATCCATAATGCATGAAGCCCACTCCTTGTGGAGCGCTCCTCCGGGCTaGCACGGACAGCCCCGAGGT | + |
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Preference number: 4 (lower is better) Translates to: SPQWRGSGSIMHEAHSLWSAPPG*HGQPRG Trigger: ACCTCGGGGCTGTCCGTGCCAGCCCGGAGGAGCGCT...CCACAAGGAGTGGGCTTCATGCATTATGGATCCCGACCCCCGCCACTGTGGGCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR TCA 90 bp | CCTGGAGCAAGCCCACAGTGGCGGGGGTCGGGATCCATAATGCATGAAGCCCACCGCGATCGTTGGCTTTaGCGCGACGACTCCTCCGCA | + |
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Preference number: 4 (lower is better) Translates to: PGASPQWRGSGSIMHEAHRDRWL*RDDSSA Trigger: TGCGGAGGAGTCGTCGCGTCAAAGCCAACGATCGCG...GTGGGCTTCATGCATTATGGATCCCGACCCCCGCCACTGTGGGCTTGCTCCAGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR GCA 90 bp | CTCGTCTTCAGGGGCTCATCTGTCCCTTTTCCAAACCACACTGAAGTGGTGGCTGGCGCTCCCGGGCACTaGCCCCGGGGAGCCCTTGAT | + |
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Preference number: 4 (lower is better) Translates to: LVFRGSSVPFPNHTEVVAGAPGH*PRGALD Trigger: ATCAAGGGCTCCCCGGGGGCAGTGCCCGGGAGCGCC...AGCCACCACTTCAGTGTGGTTTGGAAAAGGGACAGATGAGCCCCTGAAGACGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR CCA 90 bp | GCCCACTCCTTGTGGCTCCTTTTTAAGCCTTGCCATTGTATTGTCAGCCGGCTCAGGACTCAGTGTCGCTaGCCGGGCTCGGGGGCCCGG | + |
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Preference number: 4 (lower is better) Translates to: AHSLWLLFKPCHCIVSRLRTQCR*PGSGAR Trigger: CCGGGCCCCCGAGCCCGGCCAGCGACACTGAGTCCT...GAGCCGGCTGACAATACAATGGCAAGGCTTAAAAAGGAGCCACAAGGAGTGGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR TCA 90 bp | CCTCCAGTCCAGTGCCTGAATAGCTATGCTAGCACTCAGGTTCTTCCTGGAGCAGGGGTCAGAGAGTGGTaGTGCCACAGTGGCGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: PPVQCLNSYASTQVLPGAGVREW*CHSGAG Trigger: CCCTGCGCCACTGTGGCATCACCACTCTCTGACCCC...TGCTCCAGGAAGAACCTGAGTGCTAGCATAGCTATTCAGGCACTGGACTGGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR CCA 90 bp | AGCCCACAGTGGCGGGGGTCGGGATCCATAATGCATGAAGCCCACTCCTTGTGGTGTGGAGCAGGTCTTTaGGCAGGCCAGGAAAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: SPQWRGSGSIMHEAHSLWCGAGL*AGQERR Trigger: TCTCCTTTCCTGGCCTGCCCAAAGACCTGCTCCACA...CCACAAGGAGTGGGCTTCATGCATTATGGATCCCGACCCCCGCCACTGTGGGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR GCA 90 bp | TTCACCTCGTCTTCAGGGGCTCATCTGTCCCTTTTCCAAACCACACTGAAGTGGGGGGAGCCCTTGATCTaGCAGGCGCAGTGTCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: FTSSSGAHLSLFQTTLKWGEPLI*QAQCLS Trigger: GCTGAGACACTGCGCCTGGCAGATCAAGGGCTCCCC...CCACTTCAGTGTGGTTTGGAAAAGGGACAGATGAGCCCCTGAAGACGAGGTGAA 57% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR CCA 90 bp | AGGGCAGCTTCAGCGAGGGTGCAGCAACCTAACAAGTGGTCAGGTATTCCCCCTTCCTGCTCTTCGTCCTaGGCACCGGGAACATTCGAT | + |
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Preference number: 4 (lower is better) Translates to: RAASARVQQPNKWSGIPPSCSSS*APGTFD Trigger: ATCGAATGTTCCCGGTGCCCAGGACGAAGAGCAGGA...AGGGGGAATACCTGACCACTTGTTAGGTTGCTGCACCCTCGCTGAAGCTGCCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR CCA 90 bp | TGCCTGAATAGCTATGCTAGCACTCAGGTTCTTCCTGGAGCAAGCCCACAGTGGAAACAGGGCGTCGTGTaGAGCAGGTCTTTGGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: CLNSYASTQVLPGASPQWKQGVV*SRSLGR Trigger: CCTGCCCAAAGACCTGCTCCACACGACGCCCTGTTT...CCACTGTGGGCTTGCTCCAGGAAGAACCTGAGTGCTAGCATAGCTATTCAGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR GCA 90 bp | CTTCAGCCAGTTCCCCATCTATTATTGCTCTTAGACTGGGGGAGGAAGAAAGTAACCGGGAACATTCGATaGCCCGGAGAGGGCGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: LQPVPHLLLLLDWGRKKVTGNIR*PGEGGS Trigger: GCTCCCGCCCTCTCCGGGGCATCGAATGTTCCCGGT...TACTTTCTTCCTCCCCCAGTCTAAGAGCAATAATAGATGGGGAACTGGCTGAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR TCA 90 bp | ATTATTGCTCTTAGACTGGGGGAGGAAGAAAGTATTGATGTTGCCTTACAAAGGCCCCCGGGGAGCCCTTaGTCTGCCAGGCGCAGTGTC | + |
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Preference number: 4 (lower is better) Translates to: IIALRLGEEESIDVALQRPPGSP*SARRSV Trigger: GACACTGCGCCTGGCAGATCAAGGGCTCCCCGGGGG...CCTTTGTAAGGCAACATCAATACTTTCTTCCTCCCCCAGTCTAAGAGCAATAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR TCA 90 bp | CGGGGGTCGGGATCCATAATGCATGAAGCCCACTCCTTGTGGCTCCTTTTTAAGATAGGTGAAGTCTTCTaGAGCCGAGGGACTACTGGG | + |
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Preference number: 4 (lower is better) Translates to: RGSGSIMHEAHSLWLLFKIGEVF*SRGTTG Trigger: CCCAGTAGTCCCTCGGCTTCAGAAGACTTCACCTAT...CTTAAAAAGGAGCCACAAGGAGTGGGCTTCATGCATTATGGATCCCGACCCCCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR CCA 90 bp | CTCGTCTTCAGGGGCTCATCTGTCCCTTTTCCAAACCACACTGAAGTGGTGGCTTGCTGCTGTTGCTGCTaGAGCAGTCGAGATCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: LVFRGSSVPFPNHTEVVACCCCC*SSRDQR Trigger: TCTCTGATCTCGACTGCTCCAGCAGCAACAGCAGCA...AGCCACCACTTCAGTGTGGTTTGGAAAAGGGACAGATGAGCCCCTGAAGACGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR GCA 90 bp | GCCTTGCCATTGTATTGTCAGCCGGCTCAAACCGAATTTTCATGCTCGTTTTTCTGGACAGGTCGCTGCTaGTGTTGCTGCTGGAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: ALPLYCQPAQTEFSCSFFWTGRC*CCCWSS Trigger: ACTGCTCCAGCAGCAACAGCAGCAGCGACCTGTCCA...GAAAAACGAGCATGAAAATTCGGTTTGAGCCGGCTGACAATACAATGGCAAGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| 3UTR CAA 72 bp | CGGGGGTCGGGATCCATAATGCATGAAGCCCACTCCTaGTGGCTCCTTTTTAAGCCTTGCCATTGTATTGTC | + |
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Preference number: 4 (lower is better) Translates to: RGSGSIMHEAHS*WLLFKPCHCIV Trigger: GACAATACAATGGCAAGGCTTAAAAAGGAGCCACAAGGAGTGGGCTTCATGCATTATGGATCCCGACCCCCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR TCA 90 bp | AGTTCCCCATCTATTATTGCTCTTAGACTGGGGGAGGAAGAAAGTATTGATGTTAGTCCTCCTCGTCGGTaGGGAAGCTGGACAGGTCGC | + |
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Preference number: 4 (lower is better) Translates to: SSPSIIALRLGEEESIDVSPPRR*GSWTGR Trigger: GCGACCTGTCCAGCTTCCTCACCGACGAGGAGGACT...AACATCAATACTTTCTTCCTCCCCCAGTCTAAGAGCAATAATAGATGGGGAACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR CCA 90 bp | TGCATGAAGCCCACTCCTTGTGGCTCCTTTTTAAGCCTTGCCATTGTATTGTCAAAGCCGAGGGACTACTaGGGTCAGAGAGTGGTGATG | + |
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Preference number: 4 (lower is better) Translates to: CMKPTPCGSFLSLAIVLSKPRDY*GQRVVM Trigger: CATCACCACTCTCTGACCCCAGTAGTCCCTCGGCTT...TGACAATACAATGGCAAGGCTTAAAAAGGAGCCACAAGGAGTGGGCTTCATGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| 3UTR CAA 72 bp | ACTCCTTGTGGCTCCTTTTTAAGCCTTGCCATTGTATaGTCAGCCGGCTCAAACCGAATTTTCATGCTCGTT | + |
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Preference number: 4 (lower is better) Translates to: TPCGSFLSLAIV*SAGSNRIFMLV Trigger: AACGAGCATGAAAATTCGGTTTGAGCCGGCTGACAATACAATGGCAAGGCTTAAAAAGGAGCCACAAGGAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS GCA 90 bp | CGCTCGCGATCGTTGGCTTTGACGCGACGACTCCTCCGCAGGGAGTaGAGCAGAGCCTCGGACCGCACCCGAGCGCGACCTCGCCGCCTC | + |
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Preference number: 5 (lower is better) Translates to: RSRSLALTRRLLRRE*SRASDRTRARPRRL Trigger: GAGGCGGCGAGGTCGCGCTCGGGTGCGGTCCGAGGCTCTGCTGCACTCCCTGCGGAGGAGTCGTCGCGTCAAAGCCAACGATCGCGAGCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR CAA 90 bp | CGAGGGCAGCTTCAGCGAGGGTGCAGCAACCTAACAAGTGGTCAGGTATTCCCCTCGCGATCGTTGGCTTaGACGCGACGACTCCTCCGC | + |
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Preference number: 5 (lower is better) Translates to: RGQLQRGCSNLTSGQVFPSRSLA*TRRLLR Trigger: GCGGAGGAGTCGTCGCGTCAAAGCCAACGATCGCGA...GGGGAATACCTGACCACTTGTTAGGTTGCTGCACCCTCGCTGAAGCTGCCCTCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR CAA 90 bp | GCTCATCTGTCCCTTTTCCAAACCACACTGAAGTGGTGGCTGGGGTCAGTTCTGGCCCCCGGGGAGCCCTaGATCTGCCAGGCGCAGTGT | + |
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Preference number: 5 (lower is better) Translates to: AHLSLFQTTLKWWLGSVLAPGEP*ICQAQC Trigger: ACACTGCGCCTGGCAGATCAAGGGCTCCCCGGGGGC...CAGAACTGACCCCAGCCACCACTTCAGTGTGGTTTGGAAAAGGGACAGATGAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR CAA 90 bp | CCTCCAGTCCAGTGCCTGAATAGCTATGCTAGCACTCAGGTTCTTCCTGGAGCAAGGTCGCTGCTGCTGTaGCTGCTGGAGCAGTCGAGA | + |
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Preference number: 5 (lower is better) Translates to: PPVQCLNSYASTQVLPGARSLLL*LLEQSR Trigger: TCTCGACTGCTCCAGCAGCAACAGCAGCAGCGACCT...TGCTCCAGGAAGAACCTGAGTGCTAGCATAGCTATTCAGGCACTGGACTGGAGG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR CAA 90 bp | TGCATGAAGCCCACTCCTTGTGGCTCCTTTTTAAGCCTTGCCATTGTATTGTCAGTGTGGAGCAGGTCTTaGGGCAGGCCAGGAAAGGAG | + |
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Preference number: 5 (lower is better) Translates to: CMKPTPCGSFLSLAIVLSVWSRS*GRPGKE Trigger: CTCCTTTCCTGGCCTGCCCAAAGACCTGCTCCACAC...TGACAATACAATGGCAAGGCTTAAAAAGGAGCCACAAGGAGTGGGCTTCATGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS-3UTR CAA 90 bp | AGTTCCCCATCTATTATTGCTCTTAGACTGGGGGAGGAAGAAAGTATTGATGTTTTGCGCTCGCGATCGTaGGCTTTGACGCGACGACTC | + |
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Preference number: 5 (lower is better) Translates to: SSPSIIALRLGEEESIDVLRSRS*ALTRRL Trigger: GAGTCGTCGCGTCAAAGCCAACGATCGCGAGCGCAA...AACATCAATACTTTCTTCCTCCCCCAGTCTAAGAGCAATAATAGATGGGGAACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS GCA 72 bp | GGACACACTGCGGAGGCAGGAGGCGCTCCCGGGCACTaGCCCCGGGGAGCCCTTGATCTGCCAGGCGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: GHTAEAGGAPGH*PRGALDLPGAV Trigger: CACTGCGCCTGGCAGATCAAGGGCTCCCCGGGGGCAGTGCCCGGGAGCGCCTCCTGCCTCCGCAGTGTGTCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS CAA 72 bp | CAGGAGGCGCTCCCGGGCACTGCCCCCGGGGAGCCCTaGATCTGCCAGGCGCAGTGTCTCAGCCAGGGCCCA | + |
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Preference number: 6 (lower is better) Translates to: QEALPGTAPGEP*ICQAQCLSQGP Trigger: TGGGCCCTGGCTGAGACACTGCGCCTGGCAGATCAAGGGCTCCCCGGGGGCAGTGCCCGGGAGCGCCTCCTG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS CCA 72 bp | GAGCGCTCCTCCGGGCTGGCACGGACAGCCCCGAGGTaGAGGCTAGGGGCTGTAGCCTGGCACAGTCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: ERSSGLARTAPR*RLGAVAWHSPP Trigger: AGGAGGACTGTGCCAGGCTACAGCCCCTAGCCTCCACCTCGGGGCTGTCCGTGCCAGCCCGGAGGAGCGCTC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS CCA 72 bp | CGACCTCGCCGCCTCCGCCGTTCCTGCTCTTCGTCCTaGGCACCGGGAACATTCGATGCCCCGGAGAGGGCG | + |
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Preference number: 6 (lower is better) Translates to: RPRRLRRSCSSS*APGTFDAPERA Trigger: CGCCCTCTCCGGGGCATCGAATGTTCCCGGTGCCCAGGACGAAGAGCAGGAACGGCGGAGGCGGCGAGGTCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS GCA 72 bp | TTCCTGCTCTTCGTCCTGGGCACCGGGAACATTCGATaGCCCGGAGAGGGCGGGAGCGCTCCTCCGGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: FLLFVLGTGNIR*PGEGGSAPPGW Trigger: CCAGCCCGGAGGAGCGCTCCCGCCCTCTCCGGGGCATCGAATGTTCCCGGTGCCCAGGACGAAGAGCAGGAA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS TCA 72 bp | CTAGGGGCTGTAGCCTGGCACAGTCCTCCTCGTCGGTaGGGAAGCTGGACAGGTCGCTGCTGCTGTTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: LGAVAWHSPPRR*GSWTGRCCCCC Trigger: GCAGCAACAGCAGCAGCGACCTGTCCAGCTTCCTCACCGACGAGGAGGACTGTGCCAGGCTACAGCCCCTAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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| CDS CAA 90 bp | CAGTCCTCCTCGTCGGTGAGGAAGCTGGACAGGTCGCTGCTGCTGTaGCTGCTGGAGCAGTCGAGATCAGAGATGCAGGTCTCCAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: QSSSSVRKLDRSLLL*LLEQSRSEMQVSKG Trigger: CCCTTTGGAGACCTGCATCTCTGATCTCGACTGCTCCAGCAGCAACAGCAGCAGCGACCTGTCCAGCTTCCTCACCGACGAGGAGGACTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058475.6 |
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