RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NEUROD6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037984

Ensembl transcript IDs: ENSMUST00000044767.10

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCACAGTGTaGTACAGACAAGAGGGAAGGAAAGGAAGTTCTCATACGAAAAGG +
Preference number: 1 (lower is better)
Translates to: ERERERERERERITV*YRQEGRKGSSHTKR
Trigger: CCTTTTCGTATGAGAACTTCCTTTCCTTCCCTCTTGTCTGTATCACACTGTGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
3UTR TCA 90 bp AATTATGACACTGATAACCTCCCCCAAATACCGTGTTTCCTCCTCTaGAAATGCTTGAAGAGGAATAGTTGTTACCAACTGAATACACTT +
Preference number: 1 (lower is better)
Translates to: NYDTDNLPQIPCFLL*KCLKRNSCYQLNTL
Trigger: AAGTGTATTCAGTTGGTAACAACTATTCCTCTTCAAGCATTTTCAGAGGAGGAAACACGGTATTTGGGGGAGGTTATCAGTGTCATAATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
3UTR TCA 90 bp CAAGAGGGAAGGAAAGGAAGTTCTCATACGAAAAGGGATTTATTATaGCATAGAAAATGGTCACAATCTTTGAGACACACTTCAGAAACT +
Preference number: 1 (lower is better)
Translates to: QEGRKGSSHTKRDLL*HRKWSQSLRHTSET
Trigger: AGTTTCTGAAGTGTGTCTCAAAGATTGTGACCATTTTCTATGTCATAATAAATCCCTTTTCGTATGAGAACTTCCTTTCCTTCCCTCTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
3UTR-3UTR CAA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAGAGAATCACAGTGTGATACAGACAAGAGGGAAATGGTCACAATCTTaGAGACACACTTCAGAAACT +
Preference number: 3 (lower is better)
Translates to: ERERERERENHSVIQTRGKWSQS*RHTSET
Trigger: AGTTTCTGAAGTGTGTCTCAAAGATTGTGACCATTT...CCCTCTTGTCTGTATCACACTGTGATTCTCTCTCTCTCTCTCTCTCTCTCTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAGAGAATCACAGTGTGATACAGACAAGAGGGGCCCAAGGGGACCCCTaGGTGGCACTGCACAGTAAT +
Preference number: 4 (lower is better)
Translates to: ERERERERENHSVIQTRGAQGDP*VALHSN
Trigger: ATTACTGTGCAGTGCCACCCAGGGGTCCCCTTGGGC...CCCTCTTGTCTGTATCACACTGTGATTCTCTCTCTCTCTCTCTCTCTCTCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp AAACTAGTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCAAGAGTCCCATGCCCTaGGGGAGTGGCCAGCTCAGG +
Preference number: 4 (lower is better)
Translates to: KLVNTLDRVVPITQPTSIKSPMP*GSGQLR
Trigger: CCTGAGCTGGCCACTCCCCCAGGGCATGGGACTCTT...GATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTACTAGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp GTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCAAACACATGCCCTGGGGGAGTaGCCAGCTCAGGGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: VCCVHVFIQQHLRHLVQTHALGE*PAQGCG
Trigger: ACCACAGCCCTGAGCTGGCCACTCCCCCAGGGCATG...TGTTTGAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR TCA 90 bp AAACTAGTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCGAATGTGGAGTAGGGTaGCCTTGTGTGGTGGGCAGC +
Preference number: 4 (lower is better)
Translates to: KLVNTLDRVVPITQPTSIECGVG*PCVVGS
Trigger: GCTGCCCACCACACAAGGTCACCCTACTCCACATTC...GATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTACTAGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR GCA 90 bp GTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCAAACACTGAACATGGCACCCTaGCCAAGGGGACCCCTGGGT +
Preference number: 4 (lower is better)
Translates to: VCCVHVFIQQHLRHLVQTLNMAP*PRGPLG
Trigger: ACCCAGGGGTCCCCTTGGGCAGGGTGCCATGTTCAG...TGTTTGAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR TCA 90 bp AAACTAGTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCGGAAACTTCTGGCGTTaGGCTGTAAGCAGCCTGCCA +
Preference number: 4 (lower is better)
Translates to: KLVNTLDRVVPITQPTSIGNFWR*AVSSLP
Trigger: TGGCAGGCTGCTTACAGCTCAACGCCAGAAGTTTCC...GATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTACTAGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR TCA 90 bp GTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCAAACATGTCGGTGGGCAACCTaGACATGGCACCCTGCCCAA +
Preference number: 4 (lower is better)
Translates to: VCCVHVFIQQHLRHLVQTCRWAT*TWHPAQ
Trigger: TTGGGCAGGGTGCCATGTTCAGGTTGCCCACCGACA...TGTTTGAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR GCA 90 bp TTGAAGTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCGCATCATTGAGGCCGTaGATCCGGTTCCTCTCGCGC +
Preference number: 4 (lower is better)
Translates to: LKYAVCMSLFSNILDTLFASLRP*IRFLSR
Trigger: GCGCGAGAGGAACCGGATGCACGGCCTCAATGATGC...GAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATACTTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp AAACTAGTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCAAGGGGACCCCTGGGTaGCACTGCACAGTAATGCAT +
Preference number: 4 (lower is better)
Translates to: KLVNTLDRVVPITQPTSIKGTPG*HCTVMH
Trigger: ATGCATTACTGTGCAGTGCCACCCAGGGGTCCCCTT...GATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTACTAGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR TCA 90 bp AAACTAGTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCAGTTTTGGACGAACGTaGGCAGATCCGGTCTCTTGC +
Preference number: 4 (lower is better)
Translates to: KLVNTLDRVVPITQPTSISFGRT*ADPVSC
Trigger: GCAAGAGACCGGATCTGCTCACGTTCGTCCAAAACT...GATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTACTAGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR GCA 90 bp GTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCAAACATTATCAAGAGTCCCATaGCCTGGGGGAGTGGCCAGC +
Preference number: 4 (lower is better)
Translates to: VCCVHVFIQQHLRHLVQTLSRVP*PGGVAS
Trigger: GCTGGCCACTCCCCCAGGGCATGGGACTCTTGATAA...TGTTTGAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp GTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCTGCTTTAGGGTGGGTAGAATGTaGAGTAGGGTGACCTTGTGT +
Preference number: 4 (lower is better)
Translates to: VNTLDRVVPITQPTSICFRVGRM*SRVTLC
Trigger: ACACAAGGTCACCCTACTCCACATTCTACCCACCCT...AAAGCAGATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp TTGAAGTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCAGGGCTGTGGTAGGGTaGGTAGAATGTGGAGTAGGG +
Preference number: 4 (lower is better)
Translates to: LKYAVCMSLFSNILDTLFRAVVG*VECGVG
Trigger: CCCTACTCCACATTCTACCCACCCTACCACAGCCCT...GAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATACTTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp GTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCAAACACTTCAAACTGAGGGCTaGCACACTCAGGGGAGGTAC +
Preference number: 4 (lower is better)
Translates to: VCCVHVFIQQHLRHLVQTLQTEG*HTQGRY
Trigger: GTACCTCCCCTGAGTGTGCCAGCCCTCAGTTTGAAG...TGTTTGAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR GCA 90 bp GTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCTGCTTTGCTGGGAAAGACCTTTaGATAAGTTTTGGACGAACG +
Preference number: 4 (lower is better)
Translates to: VNTLDRVVPITQPTSICFAGKDL*ISFGRT
Trigger: CGTTCGTCCAAAACTTATGCAAAGGTCTTTCCCAGC...AAAGCAGATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR GCA 90 bp TTGAAGTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCACCCCTGGGTGGCACTaGACAGTAATGCATGCCATA +
Preference number: 4 (lower is better)
Translates to: LKYAVCMSLFSNILDTLFTPGWH*TVMHAI
Trigger: TATGGCATGCATTACTGTGCAGTGCCACCCAGGGGT...GAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATACTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp GTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCTGCTTTCACCAAGTTTGTAGTTaGCTGGGAAAGACCTTTGCA +
Preference number: 4 (lower is better)
Translates to: VNTLDRVVPITQPTSICFHQVCS*LGKTFA
Trigger: TGCAAAGGTCTTTCCCAGCCAACTACAAACTTGGTG...AAAGCAGATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp AAACTAGTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCTGCATAGTGAGAGATTaGCTGCGCAGATGTAAGTCG +
Preference number: 4 (lower is better)
Translates to: KLVNTLDRVVPITQPTSICIVRD*LRRCKS
Trigger: CGACTTACATCTGCGCAGCCAATCTCTCACTATGCA...GATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTACTAGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp AAACTAGTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCAACTTTCTGCACATCTaGGATTCGGGCATTACGACA +
Preference number: 4 (lower is better)
Translates to: KLVNTLDRVVPITQPTSINFLHI*DSGITT
Trigger: TGTCGTAATGCCCGAATCCCAGATGTGCAGAAAGTT...GATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTACTAGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR GCA 90 bp TTGAAGTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCGCAGATCCGGTCTCTTaGCAATCCTCAGAATTTCAG +
Preference number: 4 (lower is better)
Translates to: LKYAVCMSLFSNILDTLFADPVS*QSSEFQ
Trigger: CTGAAATTCTGAGGATTGGCAAGAGACCGGATCTGC...GAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATACTTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR GCA 90 bp GTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCTGCTTTGCATTTAATTCATCTTaGATAGTGAGAGATTGGCTG +
Preference number: 4 (lower is better)
Translates to: VNTLDRVVPITQPTSICFAFNSS*IVRDWL
Trigger: CAGCCAATCTCTCACTATGCAAGATGAATTAAATGC...AAAGCAGATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp GTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCAAACACCTTTGCATAAGTTTTaGACGAACGTGAGCAGATCC +
Preference number: 4 (lower is better)
Translates to: VCCVHVFIQQHLRHLVQTPLHKF*TNVSRS
Trigger: GGATCTGCTCACGTTCGTCCAAAACTTATGCAAAGG...TGTTTGAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp AAACTAGTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCCCCAGATGTAATTTTTaGCCAGTCGTAAAGTTTCTA +
Preference number: 4 (lower is better)
Translates to: KLVNTLDRVVPITQPTSIPRCNF*PVVKFL
Trigger: TAGAAACTTTACGACTGGCCAAAAATTACATCTGGG...GATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTACTAGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp GTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCTGCTTTAATTGTAGGGTTTCATaGACTTGGAATTATCAAGAG +
Preference number: 4 (lower is better)
Translates to: VNTLDRVVPITQPTSICFNCRVS*TWNYQE
Trigger: CTCTTGATAATTCCAAGTCCATGAAACCCTACAATT...AAAGCAGATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp AAACTAGTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCTTCTTAATTTGTTTCTaGTCCTCACATTGTCTAGCA +
Preference number: 4 (lower is better)
Translates to: KLVNTLDRVVPITQPTSIFLICF*SSHCLA
Trigger: TGCTAGACAATGTGAGGACCAGAAACAAATTAAGAA...GATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTACTAGTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp TTGAAGTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCAAGTTTGTAGTTGGCTaGGAAAGACCTTTGCATAAG +
Preference number: 4 (lower is better)
Translates to: LKYAVCMSLFSNILDTLFKFVVG*ERPLHK
Trigger: CTTATGCAAAGGTCTTTCCCAGCCAACTACAAACTT...GAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATACTTCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR GCA 90 bp GTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCAAACAATAGAAGGATTCATATaGACTGCAGTAATTGTAGGG +
Preference number: 4 (lower is better)
Translates to: VCCVHVFIQQHLRHLVQTIEGFI*TAVIVG
Trigger: CCCTACAATTACTGCAGTGCATATGAATCCTTCTAT...TGTTTGAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CCA 90 bp GTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCAAACAAAGGACAACTTGTTTTaGAAAGCTCTCTGGTTTCTT +
Preference number: 4 (lower is better)
Translates to: VCCVHVFIQQHLRHLVQTKDNLF*KALWFL
Trigger: AAGAAACCAGAGAGCTTTCCAAAACAAGTTGTCCTT...TGTTTGAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS TCA 90 bp GGCCAGCTCAGGGCTGTGGTAGGGTGGGTAGAATGTGGAGTAGGGTaGCCTTGTGTGGTGGGCAGCCTCCCCACCCTGACCCATCAGGAA +
Preference number: 5 (lower is better)
Translates to: GQLRAVVGWVECGVG*PCVVGSLPTLTHQE
Trigger: TTCCTGATGGGTCAGGGTGGGGAGGCTGCCCACCACACAAGGTCACCCTACTCCACATTCTACCCACCCTACCACAGCCCTGAGCTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS TCA 90 bp TGCGCAGATGTAAGTCGTAAGGGAAGTGGCTGTCGGTGGGCAACCTaGACATGGCACCCTGCCCAAGGGGACCCCTGGGTGGCACTGCAC +
Preference number: 5 (lower is better)
Translates to: CADVSRKGSGCRWAT*TWHPAQGDPWVALH
Trigger: GTGCAGTGCCACCCAGGGGTCCCCTTGGGCAGGGTGCCATGTTCAGGTTGCCCACCGACAGCCACTTCCCTTACGACTTACATCTGCGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS GCA 90 bp CAGGGGACCACTTTTCGCAAATTGTCCAGAGCATCATTGAGGCCGTaGATCCGGTTCCTCTCGCGCGCATTAGCTTCCTGTCTCCTGAAC +
Preference number: 5 (lower is better)
Translates to: QGTTFRKLSRASLRP*IRFLSRALASCLLN
Trigger: GTTCAGGAGACAGGAAGCTAATGCGCGCGAGAGGAACCGGATGCACGGCCTCAATGATGCTCTGGACAATTTGCGAAAAGTGGTCCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CCA 90 bp GTTTCATGGACTTGGAATTATCAAGAGTCCCATGCCCTGGGGGAGTaGCCAGCTCAGGGCTGTGGTAGGGTGGGTAGAATGTGGAGTAGG +
Preference number: 5 (lower is better)
Translates to: VSWTWNYQESHALGE*PAQGCGRVGRMWSR
Trigger: CCTACTCCACATTCTACCCACCCTACCACAGCCCTGAGCTGGCCACTCCCCCAGGGCATGGGACTCTTGATAATTCCAAGTCCATGAAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CAA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAGAGAATCACAGTGTGATACAGACAAGAGGGTGGAGTAGGGTGACCTaGTGTGGTGGGCAGCCTCCC +
Preference number: 5 (lower is better)
Translates to: ERERERERENHSVIQTRGWSRVT*CGGQPP
Trigger: GGGAGGCTGCCCACCACACAAGGTCACCCTACTCCA...CCCTCTTGTCTGTATCACACTGTGATTCTCTCTCTCTCTCTCTCTCTCTCTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CCA 90 bp ATTGTAGGGTTTCATGGACTTGGAATTATCAAGAGTCCCATGCCCTaGGGGAGTGGCCAGCTCAGGGCTGTGGTAGGGTGGGTAGAATGT +
Preference number: 5 (lower is better)
Translates to: IVGFHGLGIIKSPMP*GSGQLRAVVGWVEC
Trigger: ACATTCTACCCACCCTACCACAGCCCTGAGCTGGCCACTCCCCCAGGGCATGGGACTCTTGATAATTCCAAGTCCATGAAACCCTACAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CCA 90 bp CTGGCGTTGAGCTGTAAGCAGCCTGCCACCAAGTTTGTAGTTGGCTaGGAAAGACCTTTGCATAAGTTTTGGACGAACGTGAGCAGATCC +
Preference number: 5 (lower is better)
Translates to: LALSCKQPATKFVVG*ERPLHKFWTNVSRS
Trigger: GGATCTGCTCACGTTCGTCCAAAACTTATGCAAAGGTCTTTCCCAGCCAACTACAAACTTGGTGGCAGGCTGCTTACAGCTCAACGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CCA 90 bp AGAAGGATTCATATGCACTGCAGTAATTGTAGGGTTTCATGGACTTaGAATTATCAAGAGTCCCATGCCCTGGGGGAGTGGCCAGCTCAG +
Preference number: 5 (lower is better)
Translates to: RRIHMHCSNCRVSWT*NYQESHALGEWPAQ
Trigger: CTGAGCTGGCCACTCCCCCAGGGCATGGGACTCTTGATAATTCCAAGTCCATGAAACCCTACAATTACTGCAGTGCATATGAATCCTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CAA 90 bp GTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCTGCTTTTTGTCCAGAGCATCATaGAGGCCGTGCATCCGGTTC +
Preference number: 5 (lower is better)
Translates to: VNTLDRVVPITQPTSICFLSRAS*RPCIRF
Trigger: GAACCGGATGCACGGCCTCAATGATGCTCTGGACAA...AAAGCAGATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CCA 90 bp GCCACCAAGTTTGTAGTTGGCTGGGAAAGACCTTTGCATAAGTTTTaGACGAACGTGAGCAGATCCGGTCTCTTGCCAATCCTCAGAATT +
Preference number: 5 (lower is better)
Translates to: ATKFVVGWERPLHKF*TNVSRSGLLPILRI
Trigger: AATTCTGAGGATTGGCAAGAGACCGGATCTGCTCACGTTCGTCCAAAACTTATGCAAAGGTCTTTCCCAGCCAACTACAAACTTGGTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CCA 90 bp TTTCATAGAAGGATTCATATGCACTGCAGTAATTGTAGGGTTTCATaGACTTGGAATTATCAAGAGTCCCATGCCCTGGGGGAGTGGCCA +
Preference number: 5 (lower is better)
Translates to: FHRRIHMHCSNCRVS*TWNYQESHALGEWP
Trigger: TGGCCACTCCCCCAGGGCATGGGACTCTTGATAATTCCAAGTCCATGAAACCCTACAATTACTGCAGTGCATATGAATCCTTCTATGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CAA 90 bp TTGAAGTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCAGGAAACTTCTGGCGTaGAGCTGTAAGCAGCCTGCC +
Preference number: 5 (lower is better)
Translates to: LKYAVCMSLFSNILDTLFRKLLA*SCKQPA
Trigger: GGCAGGCTGCTTACAGCTCAACGCCAGAAGTTTCCT...GAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATACTTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS GCA 90 bp AGGGCTGGCACACTCAGGGGAGGTACTTTCATAGAAGGATTCATATaGACTGCAGTAATTGTAGGGTTTCATGGACTTGGAATTATCAAG +
Preference number: 5 (lower is better)
Translates to: RAGTLRGGTFIEGFI*TAVIVGFHGLGIIK
Trigger: CTTGATAATTCCAAGTCCATGAAACCCTACAATTACTGCAGTGCATATGAATCCTTCTATGAAAGTACCTCCCCTGAGTGTGCCAGCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CCA 90 bp ATTTGTTTCTGGTCCTCACATTGTCTAGCAAACTTTCTGCACATCTaGGATTCGGGCATTACGACAGACTCGTCAAACGGTAGTGTTAAC +
Preference number: 5 (lower is better)
Translates to: ICFWSSHCLANFLHI*DSGITTDSSNGSVN
Trigger: GTTAACACTACCGTTTGACGAGTCTGTCGTAATGCCCGAATCCCAGATGTGCAGAAAGTTTGCTAGACAATGTGAGGACCAGAAACAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CAA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAGAGAATCACAGTGTGATACAGACAAGAGGGCTCTGGTTTCTTAATTaGTTTCTGGTCCTCACATTG +
Preference number: 5 (lower is better)
Translates to: ERERERERENHSVIQTRGLWFLN*FLVLTL
Trigger: CAATGTGAGGACCAGAAACAAATTAAGAAACCAGAG...CCCTCTTGTCTGTATCACACTGTGATTCTCTCTCTCTCTCTCTCTCTCTCTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CAA 90 bp AAACTAGTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCGGCTGGGAAAGACCTTaGCATAAGTTTTGGACGAAC +
Preference number: 5 (lower is better)
Translates to: KLVNTLDRVVPITQPTSIGWERP*HKFWTN
Trigger: GTTCGTCCAAAACTTATGCAAAGGTCTTTCCCAGCC...GATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTACTAGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CAA 90 bp GTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCTGCTTTGTCCAAGGTTTCTTCTaGCTTCAGGGAAAATATCCC +
Preference number: 5 (lower is better)
Translates to: VNTLDRVVPITQPTSICFVQGFF*LQGKYP
Trigger: GGGATATTTTCCCTGAAGCAAGAAGAAACCTTGGAC...AAAGCAGATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS GCA 90 bp TGGCACACTCAGGGGAGGTACTTTCATAGAAGGATTCATATGCACTaGAGTAATTGTAGGGTTTCATGGACTTGGAATTATCAAGAGTCC +
Preference number: 5 (lower is better)
Translates to: WHTQGRYFHRRIHMH*SNCRVSWTWNYQES
Trigger: GGACTCTTGATAATTCCAAGTCCATGAAACCCTACAATTACTGCAGTGCATATGAATCCTTCTATGAAAGTACCTCCCCTGAGTGTGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS GCA 90 bp CCCTGGGTGGCACTGCACAGTAATGCATGCCATAATTGTAATTTTTaGCATAGTCCAAGGTTTCTTCTTGCTTCAGGGAAAATATCCCAT +
Preference number: 5 (lower is better)
Translates to: PWVALHSNACHNCNF*HSPRFLLASGKISH
Trigger: ATGGGATATTTTCCCTGAAGCAAGAAGAAACCTTGGACTATGGCAAAAATTACAATTATGGCATGCATTACTGTGCAGTGCCACCCAGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CAA 90 bp GTAAACACCTTAGATAGAGTTGTGCCAATTACGCAGCCCACAAGCATCTGCTTTTTTCTGGTCCTCACATaGTCTAGCAAACTTTCTGCA +
Preference number: 5 (lower is better)
Translates to: VNTLDRVVPITQPTSICFFLVLT*SSKLSA
Trigger: TGCAGAAAGTTTGCTAGACAATGTGAGGACCAGAAA...AAAGCAGATGCTTGTGGGCTGCGTAATTGGCACAACTCTATCTAAGGTGTTTAC
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CAA 90 bp TTGAAGTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCTCCTCGAAGGACAACTaGTTTTGGAAAGCTCTCTGG +
Preference number: 5 (lower is better)
Translates to: LKYAVCMSLFSNILDTLFSSKDN*FWKALW
Trigger: CCAGAGAGCTTTCCAAAACAAGTTGTCCTTCGAGGA...GAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATACTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CAA 90 bp TTGAAGTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCAGCAGATCCGGTCTCTaGCCAATCCTCAGAATTTCA +
Preference number: 5 (lower is better)
Translates to: LKYAVCMSLFSNILDTLFSRSGL*PILRIS
Trigger: TGAAATTCTGAGGATTGGCAAGAGACCGGATCTGCT...GAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATACTTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS-3UTR CAA 90 bp GTATGCTGTGTGCATGTCTTTATTCAGCAACATCTTAGACACCTTGTTCAAACAGAAGGACAACTTGTTTaGGAAAGCTCTCTGGTTTCT +
Preference number: 5 (lower is better)
Translates to: VCCVHVFIQQHLRHLVQTEGQLV*ESSLVS
Trigger: AGAAACCAGAGAGCTTTCCAAAACAAGTTGTCCTTC...TGTTTGAACAAGGTGTCTAAGATGTTGCTGAATAAAGACATGCACACAGCATAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CCA 90 bp TTTAATGCTCTTTCCTCGAAGGACAACTTGTTTTGGAAAGCTCTCTaGTTTCTTAATTTGTTTCTGGTCCTCACATTGTCTAGCAAACTT +
Preference number: 5 (lower is better)
Translates to: FNALSSKDNLFWKAL*FLNLFLVLTLSSKL
Trigger: AAGTTTGCTAGACAATGTGAGGACCAGAAACAAATTAAGAAACCAGAGAGCTTTCCAAAACAAGTTGTCCTTCGAGGAAAGAGCATTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS TCA 72 bp GTAAGTCGTAAGGGAAGTGGCTGTCGGTGGGCAACCTaGACATGGCACCCTGCCCAAGGGGACCCCTGGGTG +
Preference number: 6 (lower is better)
Translates to: VSRKGSGCRWAT*TWHPAQGDPWV
Trigger: CACCCAGGGGTCCCCTTGGGCAGGGTGCCATGTTCAGGTTGCCCACCGACAGCCACTTCCCTTACGACTTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CAA 72 bp CAGGGGACCACTTTTCGCAAATTGTCCAGAGCATCATaGAGGCCGTGCATCCGGTTCCTCTCGCGCGCATTA +
Preference number: 6 (lower is better)
Translates to: QGTTFRKLSRAS*RPCIRFLSRAL
Trigger: TAATGCGCGCGAGAGGAACCGGATGCACGGCCTCAATGATGCTCTGGACAATTTGCGAAAAGTGGTCCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CCA 72 bp CCTGAACATGGCACCCTGCCCAAGGGGACCCCTGGGTaGCACTGCACAGTAATGCATGCCATAATTGTAATT +
Preference number: 6 (lower is better)
Translates to: PEHGTLPKGTPG*HCTVMHAIIVI
Trigger: AATTACAATTATGGCATGCATTACTGTGCAGTGCCACCCAGGGGTCCCCTTGGGCAGGGTGCCATGTTCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS GCA 72 bp ACTTTTCGCAAATTGTCCAGAGCATCATTGAGGCCGTaGATCCGGTTCCTCTCGCGCGCATTAGCTTCCTGT +
Preference number: 6 (lower is better)
Translates to: TFRKLSRASLRP*IRFLSRALASC
Trigger: ACAGGAAGCTAATGCGCGCGAGAGGAACCGGATGCACGGCCTCAATGATGCTCTGGACAATTTGCGAAAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CCA 72 bp TTGGGGGAGGACTTAAGGGACCTTCAAACTGAGGGCTaGCACACTCAGGGGAGGTACTTTCATAGAAGGATT +
Preference number: 6 (lower is better)
Translates to: LGEDLRDLQTEG*HTQGRYFHRRI
Trigger: AATCCTTCTATGAAAGTACCTCCCCTGAGTGTGCCAGCCCTCAGTTTGAAGGTCCCTTAAGTCCTCCCCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CCA 72 bp TGGTCCTCACATTGTCTAGCAAACTTTCTGCACATCTaGGATTCGGGCATTACGACAGACTCGTCAAACGGT +
Preference number: 6 (lower is better)
Translates to: WSSHCLANFLHI*DSGITTDSSNG
Trigger: ACCGTTTGACGAGTCTGTCGTAATGCCCGAATCCCAGATGTGCAGAAAGTTTGCTAGACAATGTGAGGACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CCA 72 bp AGCTGTAAGCAGCCTGCCACCAAGTTTGTAGTTGGCTaGGAAAGACCTTTGCATAAGTTTTGGACGAACGTG +
Preference number: 6 (lower is better)
Translates to: SCKQPATKFVVG*ERPLHKFWTNV
Trigger: CACGTTCGTCCAAAACTTATGCAAAGGTCTTTCCCAGCCAACTACAAACTTGGTGGCAGGCTGCTTACAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS TCA 72 bp GCTGGGAAAGACCTTTGCATAAGTTTTGGACGAACGTaGGCAGATCCGGTCTCTTGCCAATCCTCAGAATTT +
Preference number: 6 (lower is better)
Translates to: AGKDLCISFGRT*ADPVSCQSSEF
Trigger: AAATTCTGAGGATTGGCAAGAGACCGGATCTGCTCACGTTCGTCCAAAACTTATGCAAAGGTCTTTCCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CCA 72 bp TTTGTAGTTGGCTGGGAAAGACCTTTGCATAAGTTTTaGACGAACGTGAGCAGATCCGGTCTCTTGCCAATC +
Preference number: 6 (lower is better)
Translates to: FVVGWERPLHKF*TNVSRSGLLPI
Trigger: GATTGGCAAGAGACCGGATCTGCTCACGTTCGTCCAAAACTTATGCAAAGGTCTTTCCCAGCCAACTACAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CAA 72 bp CATAAGTTTTGGACGAACGTGAGCAGATCCGGTCTCTaGCCAATCCTCAGAATTTCAGAAAGTGCCCAGATG +
Preference number: 6 (lower is better)
Translates to: HKFWTNVSRSGL*PILRISESAQM
Trigger: CATCTGGGCACTTTCTGAAATTCTGAGGATTGGCAAGAGACCGGATCTGCTCACGTTCGTCCAAAACTTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CAA 72 bp GCTCTCTGGTTTCTTAATTTGTTTCTGGTCCTCACATaGTCTAGCAAACTTTCTGCACATCTGGGATTCGGG +
Preference number: 6 (lower is better)
Translates to: ALWFLNLFLVLT*SSKLSAHLGFG
Trigger: CCCGAATCCCAGATGTGCAGAAAGTTTGCTAGACAATGTGAGGACCAGAAACAAATTAAGAAACCAGAGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS GCA 72 bp ACACTCAGGGGAGGTACTTTCATAGAAGGATTCATATaGACTGCAGTAATTGTAGGGTTTCATGGACTTGGA +
Preference number: 6 (lower is better)
Translates to: TLRGGTFIEGFI*TAVIVGFHGLG
Trigger: TCCAAGTCCATGAAACCCTACAATTACTGCAGTGCATATGAATCCTTCTATGAAAGTACCTCCCCTGAGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CAA 90 bp TTTTGGAAAGCTCTCTGGTTTCTTAATTTGTTTCTGGTCCTCACATaGTCTAGCAAACTTTCTGCACATCTGGGATTCGGGCATTACGAC +
Preference number: 6 (lower is better)
Translates to: FWKALWFLNLFLVLT*SSKLSAHLGFGHYD
Trigger: GTCGTAATGCCCGAATCCCAGATGTGCAGAAAGTTTGCTAGACAATGTGAGGACCAGAAACAAATTAAGAAACCAGAGAGCTTTCCAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS CAA 90 bp TCCTCGAAGGACAACTTGTTTTGGAAAGCTCTCTGGTTTCTTAATTaGTTTCTGGTCCTCACATTGTCTAGCAAACTTTCTGCACATCTG +
Preference number: 6 (lower is better)
Translates to: SSKDNLFWKALWFLN*FLVLTLSSKLSAHL
Trigger: CAGATGTGCAGAAAGTTTGCTAGACAATGTGAGGACCAGAAACAAATTAAGAAACCAGAGAGCTTTCCAAAACAAGTTGTCCTTCGAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10
CDS GCA 72 bp GCACTGCACAGTAATGCATGCCATAATTGTAATTTTTaGCATAGTCCAAGGTTTCTTCTTGCTTCAGGGAAA +
Preference number: 6 (lower is better)
Translates to: ALHSNACHNCNF*HSPRFLLASGK
Trigger: TTTCCCTGAAGCAAGAAGAAACCTTGGACTATGGCAAAAATTACAATTATGGCATGCATTACTGTGCAGTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044767.10