Pregenerated sensors for NEUROD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034701Ensembl transcript IDs: ENSMUST00000041099.5
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 90 bp | TCCAAAGGCAGTAACGACAATAAATACATATATCACTTGAAGCTTTaGGTATTTGCACTTTGCAGCAATCTTAGCAAAAGGGCTGCCTTC | + |
Preference number: 1 (lower is better) Translates to: SKGSNDNKYIYHLKL*VFALCSNLSKRAAF Trigger: GAAGGCAGCCCTTTTGCTAAGATTGCTGCAAAGTGCAAATACTCAAAGCTTCAAGTGATATATGTATTTATTGTCGTTACTGCCTTTGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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3UTR TCA 90 bp | CTGTTTCTTCCAAAGGCAGTAACGACAATAAATACATATATCACTTaGAGCTTTGAGTATTTGCACTTTGCAGCAATCTTAGCAAAAGGG | + |
Preference number: 1 (lower is better) Translates to: LFLPKAVTTINTYIT*SFEYLHFAAILAKG Trigger: CCCTTTTGCTAAGATTGCTGCAAAGTGCAAATACTCAAAGCTTCAAGTGATATATGTATTTATTGTCGTTACTGCCTTTGGAAGAAACAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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3UTR-3UTR TCA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTATATCACTTGAAGCTTTaGGTATTTGCACTTTGCAGC | + |
Preference number: 2 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLYHLKL*VFALCS Trigger: GCTGCAAAGTGCAAATACTCAAAGCTTCAAGTGATA...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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3UTR-3UTR TCA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAAAACAATACATAAGGTaGACAGGAACTTTGATCCCC | + |
Preference number: 2 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLKQYIR*TGTLIP Trigger: GGGGATCAAAGTTCCTGTTCACCTTATGTATTGTTT...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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3UTR-3UTR CCA 90 bp | GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGTCACTGTACGCACAGTaGATTCGTTTCCCGGGAATA | + |
Preference number: 2 (lower is better) Translates to: GLHFTCNSYCSNYEFDGLSLYAQ*IRFPGI Trigger: TATTCCCGGGAAACGAATCCACTGTGCGTACAGTGA...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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3UTR-3UTR CCA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTACAAAATAATTCAGCATaGGAAAGGTCACAGGTAGTA | + |
Preference number: 2 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLQNNSA*ERSQVV Trigger: TACTACCTGTGACCTTTCCCATGCTGAATTATTTTG...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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3UTR-3UTR CAA 90 bp | GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGTCGGTTTTCATCCTCTaGAGTGTTATGGGTCTGGTT | + |
Preference number: 3 (lower is better) Translates to: GLHFTCNSYCSNYEFDGLSVFIL*SVMGLV Trigger: AACCAGACCCATAACACTCAAGAGGATGAAAACCGA...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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3UTR TCA 72 bp | TTCTATTTTAGGGAGCGAGCAGGAAAAACTTTAAAGTaGGATGAATTGCTCAAATTGTGCAATTTGTTGGTT | + |
Preference number: 3 (lower is better) Translates to: FYFRERAGKTLK*DELLKLCNLLV Trigger: AACCAACAAATTGCACAATTTGAGCAATTCATCTCACTTTAAAGTTTTTCCTGCTCGCTCCCTAAAATAGAA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CCA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAGGAAGCGCTGGCGGTTaGCAGATGCGGGGGCATGTC | + |
Preference number: 4 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLGSAGG*QMRGHV Trigger: GACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCC...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CCA 90 bp | TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTACCGGGAAGGAAGCGCTaGCGGTTGGCAGATGCGGGG | + |
Preference number: 4 (lower is better) Translates to: LQYMSIPVVPASHLKQHLPGRKR*RLADAG Trigger: CCCCGCATCTGCCAACCGCCAGCGCTTCCTTCCCGG...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR GCA 90 bp | GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGGCCGCGTTCAGCCCGTaGATGCGGTTCCGCTCGCGG | + |
Preference number: 4 (lower is better) Translates to: GLHFTCNSYCSNYEFDGLAAFSP*MRFRSR Trigger: CCGCGAGCGGAACCGCATGCACGGGCTGAACGCGGC...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR GCA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAGTCCGAGGGTTGAGCTaGAGGCAGCCGGCGACCAAA | + |
Preference number: 4 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLVRGLS*RQPATK Trigger: TTTGGTCGCCGGCTGCCTGCAGCTCAACCCTCGGAC...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR GCA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAAGCAAGGTACCACCTTaGGCAGGTTGTCCAGCGCCG | + |
Preference number: 4 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLSKVPP*AGCPAP Trigger: CGGCGCTGGACAACCTGCGCAAGGTGGTACCTTGCT...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CCA 90 bp | GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGCGTGGGAGCTGTCCATaGTGCCGTAGGGCGGGCTGG | + |
Preference number: 4 (lower is better) Translates to: GLHFTCNSYCSNYEFDGLRGSCP*CRRAGW Trigger: CCAGCCCGCCCTACGGCACCATGGACAGCTCCCACG...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR GCA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTACCCTGCCAGCGTCGCTaGAGGGTAGTGCATGGTAAA | + |
Preference number: 4 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLPCQRR*RVVHGK Trigger: TTTACCATGCACTACCCTGCAGCGACGCTGGCAGGG...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR GCA 90 bp | GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGGTGGCTTTGGGGCCCTaGCAGCGTCGCTGCAGGGTA | + |
Preference number: 4 (lower is better) Translates to: GLHFTCNSYCSNYEFDGLVALGP*QRRCRV Trigger: TACCCTGCAGCGACGCTGGCAGGGCCCCAAAGCCAC...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CCA 90 bp | TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTACTCATCTGTCCAGCTTaGGGGACCTTGGGGCTGAGG | + |
Preference number: 4 (lower is better) Translates to: LQYMSIPVVPASHLKQHLLICPA*GTLGLR Trigger: CCTCAGCCCCAAGGTCCCCCAAGCTGGACAGATGAG...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CCA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTACGTCAAAGGAAGGGCTaGTGCAGTCAGTTAGGGGGC | + |
Preference number: 4 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLRQRKG*CSQLGG Trigger: GCCCCCTAACTGACTGCACCAGCCCTTCCTTTGACG...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR TCA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTACCTCGTCCTGAGAACTaGGACACTCATCTGTCCAGC | + |
Preference number: 4 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLPRPEN*DTHLSS Trigger: GCTGGACAGATGAGTGTCTCAGTTCTCAGGACGAGG...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR TCA 90 bp | GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGAGAAAGTCCGAGGGTTaGGCTGCAGGCAGCCGGCGA | + |
Preference number: 4 (lower is better) Translates to: GLHFTCNSYCSNYEFDGLRKSEG*AAGSRR Trigger: TCGCCGGCTGCCTGCAGCTCAACCCTCGGACTTTCT...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR GCA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTACCAGATCAGGGCTTTTaGCTGAGCGCAGGATCTCTG | + |
Preference number: 4 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLPDQGF*LSAGSL Trigger: CAGAGATCCTGCGCTCAGGCAAAAGCCCTGATCTGG...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CCA 90 bp | TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTATCCGCTCGCGGGCGTTaGCCTTCATGCGCCTTAATT | + |
Preference number: 4 (lower is better) Translates to: LQYMSIPVVPASHLKQHLSARGR*PSCALI Trigger: AATTAAGGCGCATGAAGGCCAACGCCCGCGAGCGGA...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CCA 90 bp | TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTATTGACGTGGAAGACGTaGGAGCTGTCCATGGTGCCG | + |
Preference number: 4 (lower is better) Translates to: LQYMSIPVVPASHLKQHLLTWKT*ELSMVP Trigger: CGGCACCATGGACAGCTCCCACGTCTTCCACGTCAA...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CCA 90 bp | GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGTGCGCTGTAGGCGTGTaGCGGCGGCTTGACGTGGAA | + |
Preference number: 4 (lower is better) Translates to: GLHFTCNSYCSNYEFDGLCAVGV*RRLDVE Trigger: TTCCACGTCAAGCCGCCGCCACACGCCTACAGCGCA...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CCA 90 bp | TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTAGAGAAGATTGATCCGTaGCTTTGGGGCCCTGCCAGC | + |
Preference number: 4 (lower is better) Translates to: LQYMSIPVVPASHLKQHLEKIDP*LWGPAS Trigger: GCTGGCAGGGCCCCAAAGCCACGGATCAATCTTCTC...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR GCA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAGTCCTCTTTCTTGTCTaGCTCGTGTTCCTCGTCCTG | + |
Preference number: 4 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLVLFLV*LVFLVL Trigger: CAGGACGAGGAACACGAGGCAGACAAGAAAGAGGAC...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CCA 90 bp | GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGATTGATCCGTGGCTTTaGGGCCCTGCCAGCGTCGCT | + |
Preference number: 4 (lower is better) Translates to: GLHFTCNSYCSNYEFDGLIDPWL*GPASVA Trigger: AGCGACGCTGGCAGGGCCCCAAAGCCACGGATCAAT...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR TCA 90 bp | TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTATCGTGTTCCTCGTCCTaGGAACTGAGACACTCATCT | + |
Preference number: 4 (lower is better) Translates to: LQYMSIPVVPASHLKQHLSCSSS*ELRHSS Trigger: AGATGAGTGTCTCAGTTCTCAGGACGAGGAACACGA...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR TCA 90 bp | TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTACTCATGACTCGCTCATaGTGCGAATGGCTATCGAAA | + |
Preference number: 4 (lower is better) Translates to: LQYMSIPVVPASHLKQHLLMTRS*CEWLSK Trigger: TTTCGATAGCCATTCGCATCATGAGCGAGTCATGAG...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR GCA 90 bp | GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGCAAAGGAAGGGCTGGTaGAGTCAGTTAGGGGGCTTT | + |
Preference number: 4 (lower is better) Translates to: GLHFTCNSYCSNYEFDGLQRKGW*SQLGGF Trigger: AAAGCCCCCTAACTGACTGCACCAGCCCTTCCTTTG...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CCA 90 bp | TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTAACAGTTTCTGGGTCTTaGAGTAGCAAGGTACCACCT | + |
Preference number: 4 (lower is better) Translates to: LQYMSIPVVPASHLKQHLTVSGS*SSKVPP Trigger: AGGTGGTACCTTGCTACTCCAAGACCCAGAAACTGT...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CCA 90 bp | GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGAAGATGGCATTAAGCTaGGCACTCATGACTCGCTCA | + |
Preference number: 4 (lower is better) Translates to: GLHFTCNSYCSNYEFDGLKMALS*ALMTRS Trigger: TGAGCGAGTCATGAGTGCCCAGCTTAATGCCATCTT...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CCA 90 bp | GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGTTCAAACTCGGCGGATaGTTCGTGTTTGAAAGAGAA | + |
Preference number: 4 (lower is better) Translates to: GLHFTCNSYCSNYEFDGLFKLGG*FVFERE Trigger: TTCTCTTTCAAACACGAACCATCCGCCGAGTTTGAA...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS GCA 90 bp | AAGGAAGCGCTGGCGGTTGGCAGATGCGGGGGCATGTCCGGGTTCTaGTCAGGCAAGAAAGTCCGAGGGTTGAGCTGCAGGCAGCCGGCG | + |
Preference number: 5 (lower is better) Translates to: KEALAVGRCGGMSGF*SGKKVRGLSCRQPA Trigger: CGCCGGCTGCCTGCAGCTCAACCCTCGGACTTTCTTGCCTGAGCAGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCTT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS CCA 90 bp | GTCCAGGGGACTGGTAGGAGTAGGGATGCACCGGGAAGGAAGCGCTaGCGGTTGGCAGATGCGGGGGCATGTCCGGGTTCTGCTCAGGCA | + |
Preference number: 5 (lower is better) Translates to: VQGTGRSRDAPGRKR*RLADAGACPGSAQA Trigger: TGCCTGAGCAGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCTTCCCGGTGCATCCCTACTCCTACCAGTCCCCTGGAC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS CCA 90 bp | CTCGTGTTCCTCGTCCTGAGAACTGAGACACTCATCTGTCCAGCTTaGGGGACCTTGGGGCTGAGGCTCGCCCATCAGCCCGCTCTCGCT | + |
Preference number: 5 (lower is better) Translates to: LVFLVLRTETLICPA*GTLGLRLAHQPALA Trigger: AGCGAGAGCGGGCTGATGGGCGAGCCTCAGCCCCAAGGTCCCCCAAGCTGGACAGATGAGTGTCTCAGTTCTCAGGACGAGGAACACGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS CCA 90 bp | GGACTGGTAGGAGTAGGGATGCACCGGGAAGGAAGCGCTGGCGGTTaGCAGATGCGGGGGCATGTCCGGGTTCTGCTCAGGCAAGAAAGT | + |
Preference number: 5 (lower is better) Translates to: GLVGVGMHREGSAGG*QMRGHVRVLLRQES Trigger: ACTTTCTTGCCTGAGCAGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCTTCCCGGTGCATCCCTACTCCTACCAGTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS TCA 90 bp | GCTCGTCCTCTTTCTTGTCTGCCTCGTGTTCCTCGTCCTGAGAACTaGGACACTCATCTGTCCAGCTTGGGGGACCTTGGGGCTGAGGCT | + |
Preference number: 5 (lower is better) Translates to: ARPLSCLPRVPRPEN*DTHLSSLGDLGAEA Trigger: AGCCTCAGCCCCAAGGTCCCCCAAGCTGGACAGATGAGTGTCTCAGTTCTCAGGACGAGGAACACGAGGCAGACAAGAAAGAGGACGAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS TCA 90 bp | GCTTCAAGCTCGTCCTCTTTCTTGTCTGCCTCGTGTTCCTCGTCCTaGGAACTGAGACACTCATCTGTCCAGCTTGGGGGACCTTGGGGC | + |
Preference number: 5 (lower is better) Translates to: ASSSSSFLSASCSSS*ELRHSSVQLGGPWG Trigger: GCCCCAAGGTCCCCCAAGCTGGACAGATGAGTGTCTCAGTTCTCAGGACGAGGAACACGAGGCAGACAAGAAAGAGGACGAGCTTGAAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS CCA 90 bp | CCTCCTCCTCTCCCCCGTTTCTCAGAGAGTCCTCCTCTGCATTCATaGCTTCAAGCTCGTCCTCTTTCTTGTCTGCCTCGTGTTCCTCGT | + |
Preference number: 5 (lower is better) Translates to: PPPLPRFSESPPLHS*LQARPLSCLPRVPR Trigger: ACGAGGAACACGAGGCAGACAAGAAAGAGGACGAGCTTGAAGCCATGAATGCAGAGGAGGACTCTCTGAGAAACGGGGGAGAGGAGGAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS GCA 90 bp | GTCCTCCTCTGCATTCATGGCTTCAAGCTCGTCCTCTTTCTTGTCTaGCTCGTGTTCCTCGTCCTGAGAACTGAGACACTCATCTGTCCA | + |
Preference number: 5 (lower is better) Translates to: VLLCIHGFKLVLFLV*LVFLVLRTETLICP Trigger: TGGACAGATGAGTGTCTCAGTTCTCAGGACGAGGAACACGAGGCAGACAAGAAAGAGGACGAGCTTGAAGCCATGAATGCAGAGGAGGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CAA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAGCGTGTGGCGGCGGCTaGACGTGGAAGACGTGGGAG | + |
Preference number: 5 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLACGGG*TWKTWE Trigger: CTCCCACGTCTTCCACGTCAAGCCGCCGCCACACGC...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CAA 90 bp | TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTAAGGAAGCGCTGGCGGTaGGCAGATGCGGGGGCATGT | + |
Preference number: 5 (lower is better) Translates to: LQYMSIPVVPASHLKQHLRKRWR*ADAGAC Trigger: ACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCT...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CAA 90 bp | TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTAAAGAAAGTCCGAGGGTaGAGCTGCAGGCAGCCGGCG | + |
Preference number: 5 (lower is better) Translates to: LQYMSIPVVPASHLKQHLKKVRG*SCRQPA Trigger: CGCCGGCTGCCTGCAGCTCAACCCTCGGACTTTCTT...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CAA 90 bp | TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTATTCCGCTCGCGGGCGTaGGCCTTCATGCGCCTTAAT | + |
Preference number: 5 (lower is better) Translates to: LQYMSIPVVPASHLKQHLFRSRA*AFMRLN Trigger: ATTAAGGCGCATGAAGGCCAACGCCCGCGAGCGGAA...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CAA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTACCGTCTCTTGGGCTTTaGATCCTCCTCCTCCTCTTC | + |
Preference number: 5 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLPSLGL*ILLLLF Trigger: GAAGAGGAGGAGGAGGATCAAAAGCCCAAGAGACGG...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CAA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAACCAGATCAGGGCTTTaGCCTGAGCGCAGGATCTCT | + |
Preference number: 5 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLTRSGL*PERRIS Trigger: AGAGATCCTGCGCTCAGGCAAAAGCCCTGATCTGGT...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CAA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAGGCTGGGACAAACCTTaGCAGAGCGTCTGTACGAAG | + |
Preference number: 5 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLGWDKP*QSVCTK Trigger: CTTCGTACAGACGCTCTGCAAAGGTTTGTCCCAGCC...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CAA 90 bp | GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGACTCATCTGTCCAGCTaGGGGGACCTTGGGGCTGAG | + |
Preference number: 5 (lower is better) Translates to: GLHFTCNSYCSNYEFDGLTHLSS*GDLGAE Trigger: CTCAGCCCCAAGGTCCCCCAAGCTGGACAGATGAGT...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CAA 90 bp | GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGAGCTCGTCCTCTTTCTaGTCTGCCTCGTGTTCCTCG | + |
Preference number: 5 (lower is better) Translates to: GLHFTCNSYCSNYEFDGLSSSSF*SASCSS Trigger: CGAGGAACACGAGGCAGACAAGAAAGAGGACGAGCT...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CAA 90 bp | GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAGCGGATGGTTCGTGTTaGAAAGAGAAGTTGCCATTG | + |
Preference number: 5 (lower is better) Translates to: ASHLKQHLFWTAFYMQQLADGSC*KEKLPL Trigger: CAATGGCAACTTCTCTTTCAAACACGAACCATCCGC...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CAA 90 bp | TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTATCGAAAGACATAATGTaGTCTATGGGGATCTCGCAG | + |
Preference number: 5 (lower is better) Translates to: LQYMSIPVVPASHLKQHLSKDIM*SMGISQ Trigger: CTGCGAGATCCCCATAGACAACATTATGTCTTTCGA...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS-3UTR CAA 90 bp | GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGCGTTCTAGGCGCGCCTaGGTCATCTTTTTCTTTTTG | + |
Preference number: 5 (lower is better) Translates to: GLHFTCNSYCSNYEFDGLRSRRA*VIFFFL Trigger: CAAAAAGAAAAAGATGACCAAGGCGCGCCTAGAACG...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS TCA 72 bp | CTCGCAGCGAGGGGCAGCGGCACCGGAAGAGAAGATTaGTCCGTGGCTTTGGGGCCCTGCCAGCGTCGCTGC | + |
Preference number: 6 (lower is better) Translates to: LAARGSGTGRED*SVALGPCQRRC Trigger: GCAGCGACGCTGGCAGGGCCCCAAAGCCACGGATCAATCTTCTCTTCCGGTGCCGCTGCCCCTCGCTGCGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS TCA 72 bp | GCTCCAGAGCTGCGCTGTAGGCGTGTGGCGGCGGCTTaGCGTGGAAGACGTGGGAGCTGTCCATGGTGCCGT | + |
Preference number: 6 (lower is better) Translates to: APELRCRRVAAA*RGRRGSCPWCR Trigger: ACGGCACCATGGACAGCTCCCACGTCTTCCACGTCAAGCCGCCGCCACACGCCTACAGCGCAGCTCTGGAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS CCA 72 bp | GGAGTAGGGATGCACCGGGAAGGAAGCGCTGGCGGTTaGCAGATGCGGGGGCATGTCCGGGTTCTGCTCAGG | + |
Preference number: 6 (lower is better) Translates to: GVGMHREGSAGG*QMRGHVRVLLR Trigger: CCTGAGCAGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCTTCCCGGTGCATCCCTACTCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS CAA 72 bp | TCTCGCAGCGAGGGGCAGCGGCACCGGAAGAGAAGATaGATCCGTGGCTTTGGGGCCCTGCCAGCGTCGCTG | + |
Preference number: 6 (lower is better) Translates to: SRSEGQRHRKRR*IRGFGALPASL Trigger: CAGCGACGCTGGCAGGGCCCCAAAGCCACGGATCAATCTTCTCTTCCGGTGCCGCTGCCCCTCGCTGCGAGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS CAA 72 bp | AGGAGTAGGGATGCACCGGGAAGGAAGCGCTGGCGGTaGGCAGATGCGGGGGCATGTCCGGGTTCTGCTCAG | + |
Preference number: 6 (lower is better) Translates to: RSRDAPGRKRWR*ADAGACPGSAQ Trigger: CTGAGCAGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCTTCCCGGTGCATCCCTACTCCT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS GCA 72 bp | CTGGCGGTTGGCAGATGCGGGGGCATGTCCGGGTTCTaGTCAGGCAAGAAAGTCCGAGGGTTGAGCTGCAGG | + |
Preference number: 6 (lower is better) Translates to: LAVGRCGGMSGF*SGKKVRGLSCR Trigger: CCTGCAGCTCAACCCTCGGACTTTCTTGCCTGAGCAGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS CCA 72 bp | ACTGGTAGGAGTAGGGATGCACCGGGAAGGAAGCGCTaGCGGTTGGCAGATGCGGGGGCATGTCCGGGTTCT | + |
Preference number: 6 (lower is better) Translates to: TGRSRDAPGRKR*RLADAGACPGS Trigger: AGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCTTCCCGGTGCATCCCTACTCCTACCAGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS CAA 90 bp | TGCGGGGGCATGTCCGGGTTCTGCTCAGGCAAGAAAGTCCGAGGGTaGAGCTGCAGGCAGCCGGCGACCAAATTGGTAGTGGGCTGGGAC | + |
Preference number: 6 (lower is better) Translates to: CGGMSGFCSGKKVRG*SCRQPATKLVVGWD Trigger: GTCCCAGCCCACTACCAATTTGGTCGCCGGCTGCCTGCAGCTCAACCCTCGGACTTTCTTGCCTGAGCAGAACCCGGACATGCCCCCGCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS CAA 90 bp | GGGACTGGTAGGAGTAGGGATGCACCGGGAAGGAAGCGCTGGCGGTaGGCAGATGCGGGGGCATGTCCGGGTTCTGCTCAGGCAAGAAAG | + |
Preference number: 6 (lower is better) Translates to: GTGRSRDAPGRKRWR*ADAGACPGSAQARK Trigger: CTTTCTTGCCTGAGCAGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCTTCCCGGTGCATCCCTACTCCTACCAGTCCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS CCA 72 bp | TTCAAAGAAGGGCTCCAGAGCTGCGCTGTAGGCGTGTaGCGGCGGCTTGACGTGGAAGACGTGGGAGCTGTC | + |
Preference number: 6 (lower is better) Translates to: FKEGLQSCAVGV*RRLDVEDVGAV Trigger: GACAGCTCCCACGTCTTCCACGTCAAGCCGCCGCCACACGCCTACAGCGCAGCTCTGGAGCCCTTCTTTGAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS CAA 72 bp | ATGTCCGGGTTCTGCTCAGGCAAGAAAGTCCGAGGGTaGAGCTGCAGGCAGCCGGCGACCAAATTGGTAGTG | + |
Preference number: 6 (lower is better) Translates to: MSGFCSGKKVRG*SCRQPATKLVV Trigger: CACTACCAATTTGGTCGCCGGCTGCCTGCAGCTCAACCCTCGGACTTTCTTGCCTGAGCAGAACCCGGACAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS CAA 90 bp | TGCAGGCAGCCGGCGACCAAATTGGTAGTGGGCTGGGACAAACCTTaGCAGAGCGTCTGTACGAAGGAGACCAGATCAGGGCTTTTGCCT | + |
Preference number: 6 (lower is better) Translates to: CRQPATKLVVGWDKP*QSVCTKETRSGLLP Trigger: AGGCAAAAGCCCTGATCTGGTCTCCTTCGTACAGACGCTCTGCAAAGGTTTGTCCCAGCCCACTACCAATTTGGTCGCCGGCTGCCTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS CAA 72 bp | CCGGCGACCAAATTGGTAGTGGGCTGGGACAAACCTTaGCAGAGCGTCTGTACGAAGGAGACCAGATCAGGG | + |
Preference number: 6 (lower is better) Translates to: PATKLVVGWDKP*QSVCTKETRSG Trigger: CCCTGATCTGGTCTCCTTCGTACAGACGCTCTGCAAAGGTTTGTCCCAGCCCACTACCAATTTGGTCGCCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS TCA 72 bp | CTTTCTTGTCTGCCTCGTGTTCCTCGTCCTGAGAACTaGGACACTCATCTGTCCAGCTTGGGGGACCTTGGG | + |
Preference number: 6 (lower is better) Translates to: LSCLPRVPRPEN*DTHLSSLGDLG Trigger: CCCAAGGTCCCCCAAGCTGGACAGATGAGTGTCTCAGTTCTCAGGACGAGGAACACGAGGCAGACAAGAAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS TCA 72 bp | TCGTCCTCTTTCTTGTCTGCCTCGTGTTCCTCGTCCTaGGAACTGAGACACTCATCTGTCCAGCTTGGGGGA | + |
Preference number: 6 (lower is better) Translates to: SSSFLSASCSSS*ELRHSSVQLGG Trigger: TCCCCCAAGCTGGACAGATGAGTGTCTCAGTTCTCAGGACGAGGAACACGAGGCAGACAAGAAAGAGGACGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS GCA 72 bp | CTCCTCCTCTCCCCCGTTTCTCAGAGAGTCCTCCTCTaGATTCATGGCTTCAAGCTCGTCCTCTTTCTTGTC | + |
Preference number: 6 (lower is better) Translates to: LLLSPVSQRVLL*IHGFKLVLFLV Trigger: GACAAGAAAGAGGACGAGCTTGAAGCCATGAATGCAGAGGAGGACTCTCTGAGAAACGGGGGAGAGGAGGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS GCA 72 bp | TGCATTCATGGCTTCAAGCTCGTCCTCTTTCTTGTCTaGCTCGTGTTCCTCGTCCTGAGAACTGAGACACTC | + |
Preference number: 6 (lower is better) Translates to: CIHGFKLVLFLV*LVFLVLRTETL Trigger: GAGTGTCTCAGTTCTCAGGACGAGGAACACGAGGCAGACAAGAAAGAGGACGAGCTTGAAGCCATGAATGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |
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CDS TCA 72 bp | AAGATGGCATTAAGCTGGGCACTCATGACTCGCTCATaGTGCGAATGGCTATCGAAAGACATAATGTTGTCT | + |
Preference number: 6 (lower is better) Translates to: KMALSWALMTRS*CEWLSKDIMLS Trigger: AGACAACATTATGTCTTTCGATAGCCATTCGCATCATGAGCGAGTCATGAGTGCCCAGCTTAATGCCATCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041099.5 |