RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NEUROD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034701

Ensembl transcript IDs: ENSMUST00000041099.5

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCCAAAGGCAGTAACGACAATAAATACATATATCACTTGAAGCTTTaGGTATTTGCACTTTGCAGCAATCTTAGCAAAAGGGCTGCCTTC +
Preference number: 1 (lower is better)
Translates to: SKGSNDNKYIYHLKL*VFALCSNLSKRAAF
Trigger: GAAGGCAGCCCTTTTGCTAAGATTGCTGCAAAGTGCAAATACTCAAAGCTTCAAGTGATATATGTATTTATTGTCGTTACTGCCTTTGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
3UTR TCA 90 bp CTGTTTCTTCCAAAGGCAGTAACGACAATAAATACATATATCACTTaGAGCTTTGAGTATTTGCACTTTGCAGCAATCTTAGCAAAAGGG +
Preference number: 1 (lower is better)
Translates to: LFLPKAVTTINTYIT*SFEYLHFAAILAKG
Trigger: CCCTTTTGCTAAGATTGCTGCAAAGTGCAAATACTCAAAGCTTCAAGTGATATATGTATTTATTGTCGTTACTGCCTTTGGAAGAAACAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
3UTR-3UTR TCA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTATATCACTTGAAGCTTTaGGTATTTGCACTTTGCAGC +
Preference number: 2 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLYHLKL*VFALCS
Trigger: GCTGCAAAGTGCAAATACTCAAAGCTTCAAGTGATA...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
3UTR-3UTR TCA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAAAACAATACATAAGGTaGACAGGAACTTTGATCCCC +
Preference number: 2 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLKQYIR*TGTLIP
Trigger: GGGGATCAAAGTTCCTGTTCACCTTATGTATTGTTT...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
3UTR-3UTR CCA 90 bp GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGTCACTGTACGCACAGTaGATTCGTTTCCCGGGAATA +
Preference number: 2 (lower is better)
Translates to: GLHFTCNSYCSNYEFDGLSLYAQ*IRFPGI
Trigger: TATTCCCGGGAAACGAATCCACTGTGCGTACAGTGA...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
3UTR-3UTR CCA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTACAAAATAATTCAGCATaGGAAAGGTCACAGGTAGTA +
Preference number: 2 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLQNNSA*ERSQVV
Trigger: TACTACCTGTGACCTTTCCCATGCTGAATTATTTTG...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
3UTR-3UTR CAA 90 bp GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGTCGGTTTTCATCCTCTaGAGTGTTATGGGTCTGGTT +
Preference number: 3 (lower is better)
Translates to: GLHFTCNSYCSNYEFDGLSVFIL*SVMGLV
Trigger: AACCAGACCCATAACACTCAAGAGGATGAAAACCGA...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
3UTR TCA 72 bp TTCTATTTTAGGGAGCGAGCAGGAAAAACTTTAAAGTaGGATGAATTGCTCAAATTGTGCAATTTGTTGGTT +
Preference number: 3 (lower is better)
Translates to: FYFRERAGKTLK*DELLKLCNLLV
Trigger: AACCAACAAATTGCACAATTTGAGCAATTCATCTCACTTTAAAGTTTTTCCTGCTCGCTCCCTAAAATAGAA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CCA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAGGAAGCGCTGGCGGTTaGCAGATGCGGGGGCATGTC +
Preference number: 4 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLGSAGG*QMRGHV
Trigger: GACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCC...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CCA 90 bp TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTACCGGGAAGGAAGCGCTaGCGGTTGGCAGATGCGGGG +
Preference number: 4 (lower is better)
Translates to: LQYMSIPVVPASHLKQHLPGRKR*RLADAG
Trigger: CCCCGCATCTGCCAACCGCCAGCGCTTCCTTCCCGG...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR GCA 90 bp GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGGCCGCGTTCAGCCCGTaGATGCGGTTCCGCTCGCGG +
Preference number: 4 (lower is better)
Translates to: GLHFTCNSYCSNYEFDGLAAFSP*MRFRSR
Trigger: CCGCGAGCGGAACCGCATGCACGGGCTGAACGCGGC...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR GCA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAGTCCGAGGGTTGAGCTaGAGGCAGCCGGCGACCAAA +
Preference number: 4 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLVRGLS*RQPATK
Trigger: TTTGGTCGCCGGCTGCCTGCAGCTCAACCCTCGGAC...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR GCA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAAGCAAGGTACCACCTTaGGCAGGTTGTCCAGCGCCG +
Preference number: 4 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLSKVPP*AGCPAP
Trigger: CGGCGCTGGACAACCTGCGCAAGGTGGTACCTTGCT...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CCA 90 bp GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGCGTGGGAGCTGTCCATaGTGCCGTAGGGCGGGCTGG +
Preference number: 4 (lower is better)
Translates to: GLHFTCNSYCSNYEFDGLRGSCP*CRRAGW
Trigger: CCAGCCCGCCCTACGGCACCATGGACAGCTCCCACG...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR GCA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTACCCTGCCAGCGTCGCTaGAGGGTAGTGCATGGTAAA +
Preference number: 4 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLPCQRR*RVVHGK
Trigger: TTTACCATGCACTACCCTGCAGCGACGCTGGCAGGG...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR GCA 90 bp GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGGTGGCTTTGGGGCCCTaGCAGCGTCGCTGCAGGGTA +
Preference number: 4 (lower is better)
Translates to: GLHFTCNSYCSNYEFDGLVALGP*QRRCRV
Trigger: TACCCTGCAGCGACGCTGGCAGGGCCCCAAAGCCAC...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CCA 90 bp TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTACTCATCTGTCCAGCTTaGGGGACCTTGGGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: LQYMSIPVVPASHLKQHLLICPA*GTLGLR
Trigger: CCTCAGCCCCAAGGTCCCCCAAGCTGGACAGATGAG...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CCA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTACGTCAAAGGAAGGGCTaGTGCAGTCAGTTAGGGGGC +
Preference number: 4 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLRQRKG*CSQLGG
Trigger: GCCCCCTAACTGACTGCACCAGCCCTTCCTTTGACG...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR TCA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTACCTCGTCCTGAGAACTaGGACACTCATCTGTCCAGC +
Preference number: 4 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLPRPEN*DTHLSS
Trigger: GCTGGACAGATGAGTGTCTCAGTTCTCAGGACGAGG...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR TCA 90 bp GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGAGAAAGTCCGAGGGTTaGGCTGCAGGCAGCCGGCGA +
Preference number: 4 (lower is better)
Translates to: GLHFTCNSYCSNYEFDGLRKSEG*AAGSRR
Trigger: TCGCCGGCTGCCTGCAGCTCAACCCTCGGACTTTCT...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR GCA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTACCAGATCAGGGCTTTTaGCTGAGCGCAGGATCTCTG +
Preference number: 4 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLPDQGF*LSAGSL
Trigger: CAGAGATCCTGCGCTCAGGCAAAAGCCCTGATCTGG...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CCA 90 bp TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTATCCGCTCGCGGGCGTTaGCCTTCATGCGCCTTAATT +
Preference number: 4 (lower is better)
Translates to: LQYMSIPVVPASHLKQHLSARGR*PSCALI
Trigger: AATTAAGGCGCATGAAGGCCAACGCCCGCGAGCGGA...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CCA 90 bp TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTATTGACGTGGAAGACGTaGGAGCTGTCCATGGTGCCG +
Preference number: 4 (lower is better)
Translates to: LQYMSIPVVPASHLKQHLLTWKT*ELSMVP
Trigger: CGGCACCATGGACAGCTCCCACGTCTTCCACGTCAA...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CCA 90 bp GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGTGCGCTGTAGGCGTGTaGCGGCGGCTTGACGTGGAA +
Preference number: 4 (lower is better)
Translates to: GLHFTCNSYCSNYEFDGLCAVGV*RRLDVE
Trigger: TTCCACGTCAAGCCGCCGCCACACGCCTACAGCGCA...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CCA 90 bp TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTAGAGAAGATTGATCCGTaGCTTTGGGGCCCTGCCAGC +
Preference number: 4 (lower is better)
Translates to: LQYMSIPVVPASHLKQHLEKIDP*LWGPAS
Trigger: GCTGGCAGGGCCCCAAAGCCACGGATCAATCTTCTC...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR GCA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAGTCCTCTTTCTTGTCTaGCTCGTGTTCCTCGTCCTG +
Preference number: 4 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLVLFLV*LVFLVL
Trigger: CAGGACGAGGAACACGAGGCAGACAAGAAAGAGGAC...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CCA 90 bp GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGATTGATCCGTGGCTTTaGGGCCCTGCCAGCGTCGCT +
Preference number: 4 (lower is better)
Translates to: GLHFTCNSYCSNYEFDGLIDPWL*GPASVA
Trigger: AGCGACGCTGGCAGGGCCCCAAAGCCACGGATCAAT...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR TCA 90 bp TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTATCGTGTTCCTCGTCCTaGGAACTGAGACACTCATCT +
Preference number: 4 (lower is better)
Translates to: LQYMSIPVVPASHLKQHLSCSSS*ELRHSS
Trigger: AGATGAGTGTCTCAGTTCTCAGGACGAGGAACACGA...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR TCA 90 bp TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTACTCATGACTCGCTCATaGTGCGAATGGCTATCGAAA +
Preference number: 4 (lower is better)
Translates to: LQYMSIPVVPASHLKQHLLMTRS*CEWLSK
Trigger: TTTCGATAGCCATTCGCATCATGAGCGAGTCATGAG...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR GCA 90 bp GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGCAAAGGAAGGGCTGGTaGAGTCAGTTAGGGGGCTTT +
Preference number: 4 (lower is better)
Translates to: GLHFTCNSYCSNYEFDGLQRKGW*SQLGGF
Trigger: AAAGCCCCCTAACTGACTGCACCAGCCCTTCCTTTG...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CCA 90 bp TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTAACAGTTTCTGGGTCTTaGAGTAGCAAGGTACCACCT +
Preference number: 4 (lower is better)
Translates to: LQYMSIPVVPASHLKQHLTVSGS*SSKVPP
Trigger: AGGTGGTACCTTGCTACTCCAAGACCCAGAAACTGT...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CCA 90 bp GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGAAGATGGCATTAAGCTaGGCACTCATGACTCGCTCA +
Preference number: 4 (lower is better)
Translates to: GLHFTCNSYCSNYEFDGLKMALS*ALMTRS
Trigger: TGAGCGAGTCATGAGTGCCCAGCTTAATGCCATCTT...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CCA 90 bp GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGTTCAAACTCGGCGGATaGTTCGTGTTTGAAAGAGAA +
Preference number: 4 (lower is better)
Translates to: GLHFTCNSYCSNYEFDGLFKLGG*FVFERE
Trigger: TTCTCTTTCAAACACGAACCATCCGCCGAGTTTGAA...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS GCA 90 bp AAGGAAGCGCTGGCGGTTGGCAGATGCGGGGGCATGTCCGGGTTCTaGTCAGGCAAGAAAGTCCGAGGGTTGAGCTGCAGGCAGCCGGCG +
Preference number: 5 (lower is better)
Translates to: KEALAVGRCGGMSGF*SGKKVRGLSCRQPA
Trigger: CGCCGGCTGCCTGCAGCTCAACCCTCGGACTTTCTTGCCTGAGCAGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS CCA 90 bp GTCCAGGGGACTGGTAGGAGTAGGGATGCACCGGGAAGGAAGCGCTaGCGGTTGGCAGATGCGGGGGCATGTCCGGGTTCTGCTCAGGCA +
Preference number: 5 (lower is better)
Translates to: VQGTGRSRDAPGRKR*RLADAGACPGSAQA
Trigger: TGCCTGAGCAGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCTTCCCGGTGCATCCCTACTCCTACCAGTCCCCTGGAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS CCA 90 bp CTCGTGTTCCTCGTCCTGAGAACTGAGACACTCATCTGTCCAGCTTaGGGGACCTTGGGGCTGAGGCTCGCCCATCAGCCCGCTCTCGCT +
Preference number: 5 (lower is better)
Translates to: LVFLVLRTETLICPA*GTLGLRLAHQPALA
Trigger: AGCGAGAGCGGGCTGATGGGCGAGCCTCAGCCCCAAGGTCCCCCAAGCTGGACAGATGAGTGTCTCAGTTCTCAGGACGAGGAACACGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS CCA 90 bp GGACTGGTAGGAGTAGGGATGCACCGGGAAGGAAGCGCTGGCGGTTaGCAGATGCGGGGGCATGTCCGGGTTCTGCTCAGGCAAGAAAGT +
Preference number: 5 (lower is better)
Translates to: GLVGVGMHREGSAGG*QMRGHVRVLLRQES
Trigger: ACTTTCTTGCCTGAGCAGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCTTCCCGGTGCATCCCTACTCCTACCAGTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS TCA 90 bp GCTCGTCCTCTTTCTTGTCTGCCTCGTGTTCCTCGTCCTGAGAACTaGGACACTCATCTGTCCAGCTTGGGGGACCTTGGGGCTGAGGCT +
Preference number: 5 (lower is better)
Translates to: ARPLSCLPRVPRPEN*DTHLSSLGDLGAEA
Trigger: AGCCTCAGCCCCAAGGTCCCCCAAGCTGGACAGATGAGTGTCTCAGTTCTCAGGACGAGGAACACGAGGCAGACAAGAAAGAGGACGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS TCA 90 bp GCTTCAAGCTCGTCCTCTTTCTTGTCTGCCTCGTGTTCCTCGTCCTaGGAACTGAGACACTCATCTGTCCAGCTTGGGGGACCTTGGGGC +
Preference number: 5 (lower is better)
Translates to: ASSSSSFLSASCSSS*ELRHSSVQLGGPWG
Trigger: GCCCCAAGGTCCCCCAAGCTGGACAGATGAGTGTCTCAGTTCTCAGGACGAGGAACACGAGGCAGACAAGAAAGAGGACGAGCTTGAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS CCA 90 bp CCTCCTCCTCTCCCCCGTTTCTCAGAGAGTCCTCCTCTGCATTCATaGCTTCAAGCTCGTCCTCTTTCTTGTCTGCCTCGTGTTCCTCGT +
Preference number: 5 (lower is better)
Translates to: PPPLPRFSESPPLHS*LQARPLSCLPRVPR
Trigger: ACGAGGAACACGAGGCAGACAAGAAAGAGGACGAGCTTGAAGCCATGAATGCAGAGGAGGACTCTCTGAGAAACGGGGGAGAGGAGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS GCA 90 bp GTCCTCCTCTGCATTCATGGCTTCAAGCTCGTCCTCTTTCTTGTCTaGCTCGTGTTCCTCGTCCTGAGAACTGAGACACTCATCTGTCCA +
Preference number: 5 (lower is better)
Translates to: VLLCIHGFKLVLFLV*LVFLVLRTETLICP
Trigger: TGGACAGATGAGTGTCTCAGTTCTCAGGACGAGGAACACGAGGCAGACAAGAAAGAGGACGAGCTTGAAGCCATGAATGCAGAGGAGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CAA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAGCGTGTGGCGGCGGCTaGACGTGGAAGACGTGGGAG +
Preference number: 5 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLACGGG*TWKTWE
Trigger: CTCCCACGTCTTCCACGTCAAGCCGCCGCCACACGC...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CAA 90 bp TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTAAGGAAGCGCTGGCGGTaGGCAGATGCGGGGGCATGT +
Preference number: 5 (lower is better)
Translates to: LQYMSIPVVPASHLKQHLRKRWR*ADAGAC
Trigger: ACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCT...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CAA 90 bp TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTAAAGAAAGTCCGAGGGTaGAGCTGCAGGCAGCCGGCG +
Preference number: 5 (lower is better)
Translates to: LQYMSIPVVPASHLKQHLKKVRG*SCRQPA
Trigger: CGCCGGCTGCCTGCAGCTCAACCCTCGGACTTTCTT...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CAA 90 bp TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTATTCCGCTCGCGGGCGTaGGCCTTCATGCGCCTTAAT +
Preference number: 5 (lower is better)
Translates to: LQYMSIPVVPASHLKQHLFRSRA*AFMRLN
Trigger: ATTAAGGCGCATGAAGGCCAACGCCCGCGAGCGGAA...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CAA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTACCGTCTCTTGGGCTTTaGATCCTCCTCCTCCTCTTC +
Preference number: 5 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLPSLGL*ILLLLF
Trigger: GAAGAGGAGGAGGAGGATCAAAAGCCCAAGAGACGG...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CAA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAACCAGATCAGGGCTTTaGCCTGAGCGCAGGATCTCT +
Preference number: 5 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLTRSGL*PERRIS
Trigger: AGAGATCCTGCGCTCAGGCAAAAGCCCTGATCTGGT...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CAA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAGGCTGGGACAAACCTTaGCAGAGCGTCTGTACGAAG +
Preference number: 5 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLGWDKP*QSVCTK
Trigger: CTTCGTACAGACGCTCTGCAAAGGTTTGTCCCAGCC...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CAA 90 bp GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGACTCATCTGTCCAGCTaGGGGGACCTTGGGGCTGAG +
Preference number: 5 (lower is better)
Translates to: GLHFTCNSYCSNYEFDGLTHLSS*GDLGAE
Trigger: CTCAGCCCCAAGGTCCCCCAAGCTGGACAGATGAGT...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CAA 90 bp GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGAGCTCGTCCTCTTTCTaGTCTGCCTCGTGTTCCTCG +
Preference number: 5 (lower is better)
Translates to: GLHFTCNSYCSNYEFDGLSSSSF*SASCSS
Trigger: CGAGGAACACGAGGCAGACAAGAAAGAGGACGAGCT...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CAA 90 bp GCATCACATCTCAAACAGCACTTATTCTGGACTGCATTTTACATGCAACAGCTAGCGGATGGTTCGTGTTaGAAAGAGAAGTTGCCATTG +
Preference number: 5 (lower is better)
Translates to: ASHLKQHLFWTAFYMQQLADGSC*KEKLPL
Trigger: CAATGGCAACTTCTCTTTCAAACACGAACCATCCGC...TAGCTGTTGCATGTAAAATGCAGTCCAGAATAAGTGCTGTTTGAGATGTGATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CAA 90 bp TTACAGTACATGTCAATTCCAGTAGTACCAGCATCACATCTCAAACAGCACTTATCGAAAGACATAATGTaGTCTATGGGGATCTCGCAG +
Preference number: 5 (lower is better)
Translates to: LQYMSIPVVPASHLKQHLSKDIM*SMGISQ
Trigger: CTGCGAGATCCCCATAGACAACATTATGTCTTTCGA...TAAGTGCTGTTTGAGATGTGATGCTGGTACTACTGGAATTGACATGTACTGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS-3UTR CAA 90 bp GGACTGCATTTTACATGCAACAGCTATTGTTCTAATTATGAATTCGATGGTTTGCGTTCTAGGCGCGCCTaGGTCATCTTTTTCTTTTTG +
Preference number: 5 (lower is better)
Translates to: GLHFTCNSYCSNYEFDGLRSRRA*VIFFFL
Trigger: CAAAAAGAAAAAGATGACCAAGGCGCGCCTAGAACG...CAAACCATCGAATTCATAATTAGAACAATAGCTGTTGCATGTAAAATGCAGTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS TCA 72 bp CTCGCAGCGAGGGGCAGCGGCACCGGAAGAGAAGATTaGTCCGTGGCTTTGGGGCCCTGCCAGCGTCGCTGC +
Preference number: 6 (lower is better)
Translates to: LAARGSGTGRED*SVALGPCQRRC
Trigger: GCAGCGACGCTGGCAGGGCCCCAAAGCCACGGATCAATCTTCTCTTCCGGTGCCGCTGCCCCTCGCTGCGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS TCA 72 bp GCTCCAGAGCTGCGCTGTAGGCGTGTGGCGGCGGCTTaGCGTGGAAGACGTGGGAGCTGTCCATGGTGCCGT +
Preference number: 6 (lower is better)
Translates to: APELRCRRVAAA*RGRRGSCPWCR
Trigger: ACGGCACCATGGACAGCTCCCACGTCTTCCACGTCAAGCCGCCGCCACACGCCTACAGCGCAGCTCTGGAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS CCA 72 bp GGAGTAGGGATGCACCGGGAAGGAAGCGCTGGCGGTTaGCAGATGCGGGGGCATGTCCGGGTTCTGCTCAGG +
Preference number: 6 (lower is better)
Translates to: GVGMHREGSAGG*QMRGHVRVLLR
Trigger: CCTGAGCAGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCTTCCCGGTGCATCCCTACTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS CAA 72 bp TCTCGCAGCGAGGGGCAGCGGCACCGGAAGAGAAGATaGATCCGTGGCTTTGGGGCCCTGCCAGCGTCGCTG +
Preference number: 6 (lower is better)
Translates to: SRSEGQRHRKRR*IRGFGALPASL
Trigger: CAGCGACGCTGGCAGGGCCCCAAAGCCACGGATCAATCTTCTCTTCCGGTGCCGCTGCCCCTCGCTGCGAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS CAA 72 bp AGGAGTAGGGATGCACCGGGAAGGAAGCGCTGGCGGTaGGCAGATGCGGGGGCATGTCCGGGTTCTGCTCAG +
Preference number: 6 (lower is better)
Translates to: RSRDAPGRKRWR*ADAGACPGSAQ
Trigger: CTGAGCAGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCTTCCCGGTGCATCCCTACTCCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS GCA 72 bp CTGGCGGTTGGCAGATGCGGGGGCATGTCCGGGTTCTaGTCAGGCAAGAAAGTCCGAGGGTTGAGCTGCAGG +
Preference number: 6 (lower is better)
Translates to: LAVGRCGGMSGF*SGKKVRGLSCR
Trigger: CCTGCAGCTCAACCCTCGGACTTTCTTGCCTGAGCAGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS CCA 72 bp ACTGGTAGGAGTAGGGATGCACCGGGAAGGAAGCGCTaGCGGTTGGCAGATGCGGGGGCATGTCCGGGTTCT +
Preference number: 6 (lower is better)
Translates to: TGRSRDAPGRKR*RLADAGACPGS
Trigger: AGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCTTCCCGGTGCATCCCTACTCCTACCAGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS CAA 90 bp TGCGGGGGCATGTCCGGGTTCTGCTCAGGCAAGAAAGTCCGAGGGTaGAGCTGCAGGCAGCCGGCGACCAAATTGGTAGTGGGCTGGGAC +
Preference number: 6 (lower is better)
Translates to: CGGMSGFCSGKKVRG*SCRQPATKLVVGWD
Trigger: GTCCCAGCCCACTACCAATTTGGTCGCCGGCTGCCTGCAGCTCAACCCTCGGACTTTCTTGCCTGAGCAGAACCCGGACATGCCCCCGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS CAA 90 bp GGGACTGGTAGGAGTAGGGATGCACCGGGAAGGAAGCGCTGGCGGTaGGCAGATGCGGGGGCATGTCCGGGTTCTGCTCAGGCAAGAAAG +
Preference number: 6 (lower is better)
Translates to: GTGRSRDAPGRKRWR*ADAGACPGSAQARK
Trigger: CTTTCTTGCCTGAGCAGAACCCGGACATGCCCCCGCATCTGCCAACCGCCAGCGCTTCCTTCCCGGTGCATCCCTACTCCTACCAGTCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS CCA 72 bp TTCAAAGAAGGGCTCCAGAGCTGCGCTGTAGGCGTGTaGCGGCGGCTTGACGTGGAAGACGTGGGAGCTGTC +
Preference number: 6 (lower is better)
Translates to: FKEGLQSCAVGV*RRLDVEDVGAV
Trigger: GACAGCTCCCACGTCTTCCACGTCAAGCCGCCGCCACACGCCTACAGCGCAGCTCTGGAGCCCTTCTTTGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS CAA 72 bp ATGTCCGGGTTCTGCTCAGGCAAGAAAGTCCGAGGGTaGAGCTGCAGGCAGCCGGCGACCAAATTGGTAGTG +
Preference number: 6 (lower is better)
Translates to: MSGFCSGKKVRG*SCRQPATKLVV
Trigger: CACTACCAATTTGGTCGCCGGCTGCCTGCAGCTCAACCCTCGGACTTTCTTGCCTGAGCAGAACCCGGACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS CAA 90 bp TGCAGGCAGCCGGCGACCAAATTGGTAGTGGGCTGGGACAAACCTTaGCAGAGCGTCTGTACGAAGGAGACCAGATCAGGGCTTTTGCCT +
Preference number: 6 (lower is better)
Translates to: CRQPATKLVVGWDKP*QSVCTKETRSGLLP
Trigger: AGGCAAAAGCCCTGATCTGGTCTCCTTCGTACAGACGCTCTGCAAAGGTTTGTCCCAGCCCACTACCAATTTGGTCGCCGGCTGCCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS CAA 72 bp CCGGCGACCAAATTGGTAGTGGGCTGGGACAAACCTTaGCAGAGCGTCTGTACGAAGGAGACCAGATCAGGG +
Preference number: 6 (lower is better)
Translates to: PATKLVVGWDKP*QSVCTKETRSG
Trigger: CCCTGATCTGGTCTCCTTCGTACAGACGCTCTGCAAAGGTTTGTCCCAGCCCACTACCAATTTGGTCGCCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS TCA 72 bp CTTTCTTGTCTGCCTCGTGTTCCTCGTCCTGAGAACTaGGACACTCATCTGTCCAGCTTGGGGGACCTTGGG +
Preference number: 6 (lower is better)
Translates to: LSCLPRVPRPEN*DTHLSSLGDLG
Trigger: CCCAAGGTCCCCCAAGCTGGACAGATGAGTGTCTCAGTTCTCAGGACGAGGAACACGAGGCAGACAAGAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS TCA 72 bp TCGTCCTCTTTCTTGTCTGCCTCGTGTTCCTCGTCCTaGGAACTGAGACACTCATCTGTCCAGCTTGGGGGA +
Preference number: 6 (lower is better)
Translates to: SSSFLSASCSSS*ELRHSSVQLGG
Trigger: TCCCCCAAGCTGGACAGATGAGTGTCTCAGTTCTCAGGACGAGGAACACGAGGCAGACAAGAAAGAGGACGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS GCA 72 bp CTCCTCCTCTCCCCCGTTTCTCAGAGAGTCCTCCTCTaGATTCATGGCTTCAAGCTCGTCCTCTTTCTTGTC +
Preference number: 6 (lower is better)
Translates to: LLLSPVSQRVLL*IHGFKLVLFLV
Trigger: GACAAGAAAGAGGACGAGCTTGAAGCCATGAATGCAGAGGAGGACTCTCTGAGAAACGGGGGAGAGGAGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS GCA 72 bp TGCATTCATGGCTTCAAGCTCGTCCTCTTTCTTGTCTaGCTCGTGTTCCTCGTCCTGAGAACTGAGACACTC +
Preference number: 6 (lower is better)
Translates to: CIHGFKLVLFLV*LVFLVLRTETL
Trigger: GAGTGTCTCAGTTCTCAGGACGAGGAACACGAGGCAGACAAGAAAGAGGACGAGCTTGAAGCCATGAATGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5
CDS TCA 72 bp AAGATGGCATTAAGCTGGGCACTCATGACTCGCTCATaGTGCGAATGGCTATCGAAAGACATAATGTTGTCT +
Preference number: 6 (lower is better)
Translates to: KMALSWALMTRS*CEWLSKDIMLS
Trigger: AGACAACATTATGTCTTTCGATAGCCATTCGCATCATGAGCGAGTCATGAGTGCCCAGCTTAATGCCATCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041099.5