Pregenerated sensors for NEU3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035239Ensembl transcript IDs: ENSMUST00000036331.7
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCAATGCGGGGCTTGAGAGATGGCTCAGTAGTTAAGAGCACTGACTaGTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGT | + |
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Preference number: 1 (lower is better) Translates to: AMRGLRDGSVVKSTD*SSEGPEFKSQQPHG Trigger: ACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTCAGTGCTCTTAACTACTGAGCCATCTCTCAAGCCCCGCATTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR TCA 90 bp | ATCCCAGCAACCACATGGTGGCTCACAACCATCTCTAATGAGATCTaGCGCCCTCTTCTGGTGTGTCTGAAGACAGCTGCAGTGTACTTA | + |
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Preference number: 1 (lower is better) Translates to: IPATTWWLTTISNEI*RPLLVCLKTAAVYL Trigger: TAAGTACACTGCAGCTGTCTTCAGACACACCAGAAGAGGGCGTCAGATCTCATTAGAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR CCA 90 bp | CCTAATACTCAGGTGAGCAGTGAACCATTGGAAAAGACAAGCCTGTaGCTTCCACTCAAGATCAGAATCCAGGCTTTGTCGAACGCGAAG | + |
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Preference number: 1 (lower is better) Translates to: PNTQVSSEPLEKTSL*LPLKIRIQALSNAK Trigger: CTTCGCGTTCGACAAAGCCTGGATTCTGATCTTGAGTGGAAGCCACAGGCTTGTCTTTTCCAATGGTTCACTGCTCACCTGAGTATTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR CCA 90 bp | GGCAGCTGGCATGGGTTTCTCATTTTCTCCCTAGTAACTGTTTTCTaGATGAGGAAGGGAAGGTGGAACACAGCATCAAGGCTGGAGAAA | + |
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Preference number: 1 (lower is better) Translates to: GSWHGFLIFSLVTVF*MRKGRWNTASRLEK Trigger: TTTCTCCAGCCTTGATGCTGTGTTCCACCTTCCCTTCCTCATCCAGAAAACAGTTACTAGGGAGAAAATGAGAAACCCATGCCAGCTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR TCA 90 bp | ATCTTTCTTCTGGCCAAGGCACCTACACATCACCTAATACTCAGGTaGGCAGTGAACCATTGGAAAAGACAAGCCTGTGGCTTCCACTCA | + |
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Preference number: 1 (lower is better) Translates to: IFLLAKAPTHHLILR*AVNHWKRQACGFHS Trigger: TGAGTGGAAGCCACAGGCTTGTCTTTTCCAATGGTTCACTGCTCACCTGAGTATTAGGTGATGTGTAGGTGCCTTGGCCAGAAGAAAGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR CCA 90 bp | TTAATACTAGAAATCTTTCCTATAATGTTGTCCTTTGGCCTTGCTTaGAAGGGCTCATGGTTCACCTGTCACGGTGAAACCATCTCAGGA | + |
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Preference number: 1 (lower is better) Translates to: LILEIFPIMLSFGLA*KGSWFTCHGETISG Trigger: TCCTGAGATGGTTTCACCGTGACAGGTGAACCATGAGCCCTTCCAAGCAAGGCCAAAGGACAACATTATAGGAAAGATTTCTAGTATTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR-3UTR CCA 90 bp | TGTCCTTTGGCCTTGCTTGGAAGGGCTCATGGTTCACCTGTCACGGTGAAACCAGAAAAGACAAGCCTGTaGCTTCCACTCAAGATCAGA | + |
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Preference number: 2 (lower is better) Translates to: CPLALLGRAHGSPVTVKPEKTSL*LPLKIR Trigger: TCTGATCTTGAGTGGAAGCCACAGGCTTGTCTTTTC...TGGTTTCACCGTGACAGGTGAACCATGAGCCCTTCCAAGCAAGGCCAAAGGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR CAA 90 bp | CAAGGCACCTACACATCACCTAATACTCAGGTGAGCAGTGAACCATaGGAAAAGACAAGCCTGTGGCTTCCACTCAAGATCAGAATCCAG | + |
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Preference number: 2 (lower is better) Translates to: QGTYTSPNTQVSSEP*EKTSLWLPLKIRIQ Trigger: CTGGATTCTGATCTTGAGTGGAAGCCACAGGCTTGTCTTTTCCAATGGTTCACTGCTCACCTGAGTATTAGGTGATGTGTAGGTGCCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR-3UTR TCA 90 bp | TTTAGGAATACTTATAGGATCATCATTAAGGTGTGGTGGTGCACACCTTTAATCAGGCAGGCGGATTTCTaGGATCGAGGCCAGCCTGGT | + |
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Preference number: 2 (lower is better) Translates to: FRNTYRIIIKVWWCTPLIRQADF*DRGQPG Trigger: ACCAGGCTGGCCTCGATCTCAGAAATCCGCCTGCCT...GATTAAAGGTGTGCACCACCACACCTTAATGATGATCCTATAAGTATTCCTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR-3UTR GCA 90 bp | ACAGCTCTCATTTTAGCTGACTGTTCAGCAGTGTTAGAATGTCCCCCTGGAAATTACCCTGGCTGTAGCTaGCATTCCTTTCTGTGGGAA | + |
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Preference number: 2 (lower is better) Translates to: TALILADCSAVLECPPGNYPGCS*HSFLWE Trigger: TTCCCACAGAAAGGAATGGCAGCTACAGCCAGGGTA...ATTTCCAGGGGGACATTCTAACACTGCTGAACAGTCAGCTAAAATGAGAGCTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR-3UTR TCA 90 bp | TCTATCTCAGAAGTAATTATGACATGTGAAGACTGGCAGAGTTCTCACTGTAGTGCTGGAGAAAGCATCTaGCCTTACAGTTCTGCTTTC | + |
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Preference number: 2 (lower is better) Translates to: SISEVIMTCEDWQSSHCSAGESI*PYSSAF Trigger: GAAAGCAGAACTGTAAGGTCAGATGCTTTCTCCAGC...ACTACAGTGAGAACTCTGCCAGTCTTCACATGTCATAATTACTTCTGAGATAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR-3UTR GCA 90 bp | ACAGCTCTCATTTTAGCTGACTGTTCAGCAGTGTTAGAATGTCCCCCTGGAAATGTGTCTGAAGACAGCTaGAGTGTACTTACATATAGT | + |
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Preference number: 2 (lower is better) Translates to: TALILADCSAVLECPPGNVSEDS*SVLTYS Trigger: ACTATATGTAAGTACACTGCAGCTGTCTTCAGACAC...ATTTCCAGGGGGACATTCTAACACTGCTGAACAGTCAGCTAAAATGAGAGCTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR-3UTR GCA 90 bp | GAAATCTTTCCTATAATGTTGTCCTTTGGCCTTGCTTGGAAGGGCTCATGGTTCCTGACCTTACAGTTCTaGTTTCTCAAGTCTTCTAAG | + |
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Preference number: 2 (lower is better) Translates to: EIFPIMLSFGLAWKGSWFLTLQF*FLKSSK Trigger: CTTAGAAGACTTGAGAAAGCAGAACTGTAAGGTCAG...GAACCATGAGCCCTTCCAAGCAAGGCCAAAGGACAACATTATAGGAAAGATTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR CAA 90 bp | ACACAGAGAAAAGGCATATTAATACTAGAAATCTTTCCTATAATGTaGTCCTTTGGCCTTGCTTGGAAGGGCTCATGGTTCACCTGTCAC | + |
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Preference number: 2 (lower is better) Translates to: TQRKGILILEIFPIM*SFGLAWKGSWFTCH Trigger: GTGACAGGTGAACCATGAGCCCTTCCAAGCAAGGCCAAAGGACAACATTATAGGAAAGATTTCTAGTATTAATATGCCTTTTCTCTGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR-3UTR TCA 90 bp | TCTATCTCAGAAGTAATTATGACATGTGAAGACTGGCAGAGTTCTCACTGTAGTCACCTAATACTCAGGTaGGCAGTGAACCATTGGAAA | + |
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Preference number: 2 (lower is better) Translates to: SISEVIMTCEDWQSSHCSHLILR*AVNHWK Trigger: TTTCCAATGGTTCACTGCTCACCTGAGTATTAGGTG...ACTACAGTGAGAACTCTGCCAGTCTTCACATGTCATAATTACTTCTGAGATAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR CAA 90 bp | CTGACCTTACAGTTCTGCTTTCTCAAGTCTTCTAAGACAGAGAATTaGTACAGCTCCAGGCATTATTGGAAGGATAAGGGCATTTTTCTT | + |
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Preference number: 2 (lower is better) Translates to: LTLQFCFLKSSKTEN*YSSRHYWKDKGIFL Trigger: AAGAAAAATGCCCTTATCCTTCCAATAATGCCTGGAGCTGTACAAATTCTCTGTCTTAGAAGACTTGAGAAAGCAGAACTGTAAGGTCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR-3UTR CCA 90 bp | TTTAGGAATACTTATAGGATCATCATTAAGGTGTGGTGGTGCACACCTTTAATCTATAATGTTGTCCTTTaGCCTTGCTTGGAAGGGCTC | + |
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Preference number: 2 (lower is better) Translates to: FRNTYRIIIKVWWCTPLIYNVVL*PCLEGL Trigger: GAGCCCTTCCAAGCAAGGCCAAAGGACAACATTATA...GATTAAAGGTGTGCACCACCACACCTTAATGATGATCCTATAAGTATTCCTAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR-3UTR CCA 90 bp | TCTATCTCAGAAGTAATTATGACATGTGAAGACTGGCAGAGTTCTCACTGTAGTTCGTTATGTAAGATATaGCACAATTTTCACCATGCT | + |
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Preference number: 2 (lower is better) Translates to: SISEVIMTCEDWQSSHCSSLCKI*HNFHHA Trigger: AGCATGGTGAAAATTGTGCCATATCTTACATAACGA...ACTACAGTGAGAACTCTGCCAGTCTTCACATGTCATAATTACTTCTGAGATAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR GCA 72 bp | CTAGACATCAGAGACCTCTGTTACCCTGGCTGTAGCTaGCATTCCTTTCTGTGGGAAGCTGGGCCTCACTCA | + |
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Preference number: 3 (lower is better) Translates to: LDIRDLCYPGCS*HSFLWEAGPHS Trigger: TGAGTGAGGCCCAGCTTCCCACAGAAAGGAATGGCAGCTACAGCCAGGGTAACAGAGGTCTCTGATGTCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR CCA 72 bp | CTCTGTTACCCTGGCTGTAGCTGCCATTCCTTTCTGTaGGAAGCTGGGCCTCACTCATCCGTCTTGATTTGG | + |
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Preference number: 3 (lower is better) Translates to: LCYPGCSCHSFL*EAGPHSSVLIW Trigger: CCAAATCAAGACGGATGAGTGAGGCCCAGCTTCCCACAGAAAGGAATGGCAGCTACAGCCAGGGTAACAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR-3UTR CAA 90 bp | CGGGGCTTGAGAGATGGCTCAGTAGTTAAGAGCACTGACTGCTCTTCTGAAGGTGTGAGCAGTGAACCATaGGAAAAGACAAGCCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: RGLRDGSVVKSTDCSSEGVSSEP*EKTSLW Trigger: CCACAGGCTTGTCTTTTCCAATGGTTCACTGCTCAC...ACCTTCAGAAGAGCAGTCAGTGCTCTTAACTACTGAGCCATCTCTCAAGCCCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR TCA 72 bp | CTGGCCAAGGCACCTACACATCACCTAATACTCAGGTaGGCAGTGAACCATTGGAAAAGACAAGCCTGTGGC | + |
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Preference number: 3 (lower is better) Translates to: LAKAPTHHLILR*AVNHWKRQACG Trigger: GCCACAGGCTTGTCTTTTCCAATGGTTCACTGCTCACCTGAGTATTAGGTGATGTGTAGGTGCCTTGGCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR TCA 72 bp | ACCACATGGTGGCTCACAACCATCTCTAATGAGATCTaGCGCCCTCTTCTGGTGTGTCTGAAGACAGCTGCA | + |
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Preference number: 3 (lower is better) Translates to: TTWWLTTISNEI*RPLLVCLKTAA Trigger: TGCAGCTGTCTTCAGACACACCAGAAGAGGGCGTCAGATCTCATTAGAGATGGTTGTGAGCCACCATGTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR CCA 72 bp | CAGGTGAGCAGTGAACCATTGGAAAAGACAAGCCTGTaGCTTCCACTCAAGATCAGAATCCAGGCTTTGTCG | + |
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Preference number: 3 (lower is better) Translates to: QVSSEPLEKTSL*LPLKIRIQALS Trigger: CGACAAAGCCTGGATTCTGATCTTGAGTGGAAGCCACAGGCTTGTCTTTTCCAATGGTTCACTGCTCACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR CCA 72 bp | CAGAATCCAGGCTTTGTCGAACGCGAAGCGAGCACATaGCCTCTCCTTTTAATGGGAAGAGAAGAGATTCAA | + |
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Preference number: 3 (lower is better) Translates to: QNPGFVEREAST*PLLLMGREEIQ Trigger: TTGAATCTCTTCTCTTCCCATTAAAAGGAGAGGCCATGTGCTCGCTTCGCGTTCGACAAAGCCTGGATTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR CCA 72 bp | TGTTCAGCAGTGTTAGAATGTCCCCCTGGAAATGGGTaGATGCAGCTAAGGACCTCTGACTCTGATTCATCT | + |
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Preference number: 3 (lower is better) Translates to: CSAVLECPPGNG*MQLRTSDSDSS Trigger: AGATGAATCAGAGTCAGAGGTCCTTAGCTGCATCCACCCATTTCCAGGGGGACATTCTAACACTGCTGAACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR TCA 72 bp | TGGAATCAGGCTAGGACACACAGCTCTCATTTTAGCTaGCTGTTCAGCAGTGTTAGAATGTCCCCCTGGAAA | + |
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Preference number: 3 (lower is better) Translates to: WNQARTHSSHFS*LFSSVRMSPWK Trigger: TTTCCAGGGGGACATTCTAACACTGCTGAACAGTCAGCTAAAATGAGAGCTGTGTGTCCTAGCCTGATTCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR CCA 72 bp | AGCACCGTTATCAACCATCATCAAGGGCAGCTGGCATaGGTTTCTCATTTTCTCCCTAGTAACTGTTTTCTG | + |
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Preference number: 3 (lower is better) Translates to: STVINHHQGQLA*VSHFLPSNCFL Trigger: CAGAAAACAGTTACTAGGGAGAAAATGAGAAACCCATGCCAGCTGCCCTTGATGATGGTTGATAACGGTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR GCA 72 bp | CATCAAGGCTGGAGAAAGCATCTGACCTTACAGTTCTaGTTTCTCAAGTCTTCTAAGACAGAGAATTTGTAC | + |
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Preference number: 3 (lower is better) Translates to: HQGWRKHLTLQF*FLKSSKTENLY Trigger: GTACAAATTCTCTGTCTTAGAAGACTTGAGAAAGCAGAACTGTAAGGTCAGATGCTTTCTCCAGCCTTGATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR CCA 72 bp | ATTAATACTAGAAATCTTTCCTATAATGTTGTCCTTTaGCCTTGCTTGGAAGGGCTCATGGTTCACCTGTCA | + |
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Preference number: 3 (lower is better) Translates to: INTRNLSYNVVL*PCLEGLMVHLS Trigger: TGACAGGTGAACCATGAGCCCTTCCAAGCAAGGCCAAAGGACAACATTATAGGAAAGATTTCTAGTATTAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR TCA 90 bp | CTCTGTTACCCTGGCTGTAGCTGCCATTCCTTTCTGTGGGAAGCTGGGCCTCACTCATCAGCCCTCGTCTaGGCACCAGGCAGGCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: LCYPGCSCHSFLWEAGPHSSALV*APGRQH Trigger: ATGCTGCCTGCCTGGTGCTCAGACGAGGGCTGATGA...GTGAGGCCCAGCTTCCCACAGAAAGGAATGGCAGCTACAGCCAGGGTAACAGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR GCA 90 bp | ACCATCTCAGGAAGATCACCTGCTAGCTCTGAGCCTCCCCTAGATGGCTCCTGGGGGTTCATGGTGCGATaGCCAGGTAATGTGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: TISGRSPASSEPPLDGSWGFMVR*PGNVAS Trigger: GGAGGCCACATTACCTGGGCATCGCACCATGAACCC...CCAGGAGCCATCTAGGGGAGGCTCAGAGCTAGCAGGTGATCTTCCTGAGATGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR GCA 90 bp | TGTCCTTTGGCCTTGCTTGGAAGGGCTCATGGTTCACCTGTCACGGTGAAACCACCGAGTGTAGCTGGATaGCATGACCTGGGCCCACAG | + |
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Preference number: 4 (lower is better) Translates to: CPLALLGRAHGSPVTVKPPSVAG*HDLGPQ Trigger: CTGTGGGCCCAGGTCATGGCATCCAGCTACACTCGG...TGGTTTCACCGTGACAGGTGAACCATGAGCCCTTCCAAGCAAGGCCAAAGGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CCA 90 bp | CTCTGTTACCCTGGCTGTAGCTGCCATTCCTTTCTGTGGGAAGCTGGGCCTCACGATCAGAGTAGCCACTaGGCCCACGGTTCAAGATCC | + |
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Preference number: 4 (lower is better) Translates to: LCYPGCSCHSFLWEAGPHDQSSH*AHGSRS Trigger: GGATCTTGAACCGTGGGCCCAGTGGCTACTCTGATC...GTGAGGCCCAGCTTCCCACAGAAAGGAATGGCAGCTACAGCCAGGGTAACAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR TCA 90 bp | TGTCCTTTGGCCTTGCTTGGAAGGGCTCATGGTTCACCTGTCACGGTGAAACCAGGCCCCGCACACAGATaGAAAACAGGTACACACGGC | + |
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Preference number: 4 (lower is better) Translates to: CPLALLGRAHGSPVTVKPGPAHR*KTGTHG Trigger: GCCGTGTGTACCTGTTTTTCATCTGTGTGCGGGGCC...TGGTTTCACCGTGACAGGTGAACCATGAGCCCTTCCAAGCAAGGCCAAAGGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR TCA 90 bp | CGGGGCTTGAGAGATGGCTCAGTAGTTAAGAGCACTGACTGCTCTTCTGAAGGTAGGCATAGGCGGGGATaGTCAGCCTTCCCGAGTGTA | + |
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Preference number: 4 (lower is better) Translates to: RGLRDGSVVKSTDCSSEGRHRRG*SAFPSV Trigger: TACACTCGGGAAGGCTGATCATCCCCGCCTATGCCT...ACCTTCAGAAGAGCAGTCAGTGCTCTTAACTACTGAGCCATCTCTCAAGCCCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR GCA 90 bp | CGGGGCTTGAGAGATGGCTCAGTAGTTAAGAGCACTGACTGCTCTTCTGAAGGTGGCAGGGGTTCATGGTaGGATGCCCAGGTAATGTGG | + |
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Preference number: 4 (lower is better) Translates to: RGLRDGSVVKSTDCSSEGGRGSW*DAQVMW Trigger: CCACATTACCTGGGCATCGCACCATGAACCCCTGCC...ACCTTCAGAAGAGCAGTCAGTGCTCTTAACTACTGAGCCATCTCTCAAGCCCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CCA 90 bp | ACCCTGGCTGTAGCTGCCATTCCTTTCTGTGGGAAGCTGGGCCTCACTCATCCGCAGCTCAGGACCTCATaGTCTGAAAACAGACAGAAG | + |
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Preference number: 4 (lower is better) Translates to: TLAVAAIPFCGKLGLTHPQLRTS*SENRQK Trigger: CTTCTGTCTGTTTTCAGACCATGAGGTCCTGAGCTG...CGGATGAGTGAGGCCCAGCTTCCCACAGAAAGGAATGGCAGCTACAGCCAGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR CAA 72 bp | AGCCTGTGGCTTCCACTCAAGATCAGAATCCAGGCTTaGTCGAACGCGAAGCGAGCACATGGCCTCTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: SLWLPLKIRIQA*SNAKRAHGLSF Trigger: AAAGGAGAGGCCATGTGCTCGCTTCGCGTTCGACAAAGCCTGGATTCTGATCTTGAGTGGAAGCCACAGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR TCA 90 bp | GCCTGTGGCTTCCACTCAAGATCAGAATCCAGGCTTTGTCGAACGCGAAGCGAGTGCCATGGTGCCATGTaGCTCCAAAGTCATCACTGT | + |
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Preference number: 4 (lower is better) Translates to: ACGFHSRSESRLCRTRSECHGAM*LQSHHC Trigger: ACAGTGATGACTTTGGAGTCACATGGCACCATGGCA...CTCGCTTCGCGTTCGACAAAGCCTGGATTCTGATCTTGAGTGGAAGCCACAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR TCA 90 bp | GCCTGTGGCTTCCACTCAAGATCAGAATCCAGGCTTTGTCGAACGCGAAGCGAGCAAGAGCCATGTTGCTaGTGGTGTTTCAGCTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: ACGFHSRSESRLCRTRSEQEPCC*WCFSSF Trigger: AAAGGAGCTGAAACACCATCAGCAACATGGCTCTTG...CTCGCTTCGCGTTCGACAAAGCCTGGATTCTGATCTTGAGTGGAAGCCACAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CCA 90 bp | AAAAGCAATAAGCACCGTTATCAACCATCATCAAGGGCAGCTGGCATGGGTTTCGGCCCACAGCAAATGTaGCCCAGCGCTTCACCTCTG | + |
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Preference number: 4 (lower is better) Translates to: KSNKHRYQPSSRAAGMGFGPQQM*PSASPL Trigger: CAGAGGTGAAGCGCTGGGCCACATTTGCTGTGGGCC...GAAACCCATGCCAGCTGCCCTTGATGATGGTTGATAACGGTGCTTATTGCTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CCA 90 bp | CGGGGCTTGAGAGATGGCTCAGTAGTTAAGAGCACTGACTGCTCTTCTGAAGGTTTGTGGGTTCAGGGTTaGCTTCTGAAAGCAGCCACC | + |
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Preference number: 4 (lower is better) Translates to: RGLRDGSVVKSTDCSSEGLWVQG*LLKAAT Trigger: GGTGGCTGCTTTCAGAAGCCAACCCTGAACCCACAA...ACCTTCAGAAGAGCAGTCAGTGCTCTTAACTACTGAGCCATCTCTCAAGCCCCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR TCA 90 bp | GGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTCTAATGTCACCTCTGAGCCAATaGCCTCCTCGGTCAAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: GPEFKSQQPHGGSQPSLMSPLSQ*PPRSSL Trigger: AAGACTTGACCGAGGAGGTCATTGGCTCAGAGGTGA...CATTAGAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CCA 90 bp | ACAGCTCTCATTTTAGCTGACTGTTCAGCAGTGTTAGAATGTCCCCCTGGAAATAAGGTACAGCAGGGCTaGGATCCGGTAGGTCACCCC | + |
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Preference number: 4 (lower is better) Translates to: TALILADCSAVLECPPGNKVQQG*DPVGHP Trigger: GGGGTGACCTACCGGATCCCAGCCCTGCTGTACCTT...ATTTCCAGGGGGACATTCTAACACTGCTGAACAGTCAGCTAAAATGAGAGCTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR TCA 90 bp | GTGAGCAGTGAACCATTGGAAAAGACAAGCCTGTGGCTTCCACTCAAGATCAGAATCCTCATCTCTGACTaGGGTCCGCTTCTCTGCAAA | + |
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Preference number: 4 (lower is better) Translates to: VSSEPLEKTSLWLPLKIRILISD*GPLLCK Trigger: TTTGCAGAGAAGCGGACCTCAGTCAGAGATGAGGAT...TCTGATCTTGAGTGGAAGCCACAGGCTTGTCTTTTCCAATGGTTCACTGCTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR TCA 90 bp | GAAATCTTTCCTATAATGTTGTCCTTTGGCCTTGCTTGGAAGGGCTCATGGTTCCAGCATCCTCATCTCTaGCTGAGGTCCGCTTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: EIFPIMLSFGLAWKGSWFQHPHL*LRSASL Trigger: CAGAGAAGCGGACCTCAGTCAGAGATGAGGATGCTG...GAACCATGAGCCCTTCCAAGCAAGGCCAAAGGACAACATTATAGGAAAGATTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR TCA 90 bp | TCTATCTCAGAAGTAATTATGACATGTGAAGACTGGCAGAGTTCTCACTGTAGTCCAGCGCTTCACCTCTaGGCCAATGACCTCCTCGGT | + |
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Preference number: 4 (lower is better) Translates to: SISEVIMTCEDWQSSHCSPALHL*ANDLLG Trigger: ACCGAGGAGGTCATTGGCTCAGAGGTGAAGCGCTGG...ACTACAGTGAGAACTCTGCCAGTCTTCACATGTCATAATTACTTCTGAGATAGA 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR TCA 90 bp | AAAAGCAATAAGCACCGTTATCAACCATCATCAAGGGCAGCTGGCATGGGTTTCGCAGAGAAACCAACGTaGGACATAGTAGGCATAGGC | + |
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Preference number: 4 (lower is better) Translates to: KSNKHRYQPSSRAAGMGFAEKPT*DIVGIG Trigger: GCCTATGCCTACTATGTCTCACGTTGGTTTCTCTGC...GAAACCCATGCCAGCTGCCCTTGATGATGGTTGATAACGGTGCTTATTGCTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CCA 90 bp | GTGAGCAGTGAACCATTGGAAAAGACAAGCCTGTGGCTTCCACTCAAGATCAGAGTCTTGATAGGTATTTaGCATCTTCAAAGGCCGGAA | + |
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Preference number: 4 (lower is better) Translates to: VSSEPLEKTSLWLPLKIRVLIGI*HLQRPE Trigger: TTCCGGCCTTTGAAGATGCCAAATACCTATCAAGAC...TCTGATCTTGAGTGGAAGCCACAGGCTTGTCTTTTCCAATGGTTCACTGCTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR CAA 72 bp | TACACATCACCTAATACTCAGGTGAGCAGTGAACCATaGGAAAAGACAAGCCTGTGGCTTCCACTCAAGATC | + |
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Preference number: 4 (lower is better) Translates to: YTSPNTQVSSEP*EKTSLWLPLKI Trigger: GATCTTGAGTGGAAGCCACAGGCTTGTCTTTTCCAATGGTTCACTGCTCACCTGAGTATTAGGTGATGTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CCA 90 bp | AATTTTAGGAATACTTATAGGATCATCATTAAGGTGTGGTGGTGCACACCTTTACAGGGCAGGGGTTCATaGTGCGATGCCCAGGTAATG | + |
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Preference number: 4 (lower is better) Translates to: NFRNTYRIIIKVWWCTPLQGRGS*CDAQVM Trigger: CATTACCTGGGCATCGCACCATGAACCCCTGCCCTG...TAAAGGTGTGCACCACCACACCTTAATGATGATCCTATAAGTATTCCTAAAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR TCA 90 bp | TCTATCTCAGAAGTAATTATGACATGTGAAGACTGGCAGAGTTCTCACTGTAGTTTCAGGGTTGGCTTCTaGAAGCAGCCACCACTATCA | + |
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Preference number: 4 (lower is better) Translates to: SISEVIMTCEDWQSSHCSFRVGF*KQPPLS Trigger: TGATAGTGGTGGCTGCTTTCAGAAGCCAACCCTGAA...ACTACAGTGAGAACTCTGCCAGTCTTCACATGTCATAATTACTTCTGAGATAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR GCA 90 bp | AATTTTAGGAATACTTATAGGATCATCATTAAGGTGTGGTGGTGCACACCTTTACCACTCTGTTCTTCCTaGTGGAACAGGGTGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: NFRNTYRIIIKVWWCTPLPLCSS*WNRVLL Trigger: CAGCAGCACCCTGTTCCAGCAGGAAGAACAGAGTGG...TAAAGGTGTGCACCACCACACCTTAATGATGATCCTATAAGTATTCCTAAAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CCA 90 bp | TCTATCTCAGAAGTAATTATGACATGTGAAGACTGGCAGAGTTCTCACTGTAGTTTGCCCCACACAATCTaGCACCTCTCAGTAACATGG | + |
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Preference number: 4 (lower is better) Translates to: SISEVIMTCEDWQSSHCSLPHTI*HLSVTW Trigger: CCATGTTACTGAGAGGTGCCAGATTGTGTGGGGCAA...ACTACAGTGAGAACTCTGCCAGTCTTCACATGTCATAATTACTTCTGAGATAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| 3UTR CAA 72 bp | CAGTTCTGCTTTCTCAAGTCTTCTAAGACAGAGAATTaGTACAGCTCCAGGCATTATTGGAAGGATAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: QFCFLKSSKTEN*YSSRHYWKDKG Trigger: GCCCTTATCCTTCCAATAATGCCTGGAGCTGTACAAATTCTCTGTCTTAGAAGACTTGAGAAAGCAGAACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CCA 90 bp | AATTTTAGGAATACTTATAGGATCATCATTAAGGTGTGGTGGTGCACACCTTTAAGGCTCATGGAGTTGTaGGTTCAGGGTTGGCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: NFRNTYRIIIKVWWCTPLRLMEL*VQGWLL Trigger: CAGAAGCCAACCCTGAACCCACAACTCCATGAGCCT...TAAAGGTGTGCACCACCACACCTTAATGATGATCCTATAAGTATTCCTAAAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CCA 90 bp | AATTTTAGGAATACTTATAGGATCATCATTAAGGTGTGGTGGTGCACACCTTTACACCTCTCAGTAACATaGCCCCGCACACAGATGAAA | + |
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Preference number: 4 (lower is better) Translates to: NFRNTYRIIIKVWWCTPLHLSVT*PRTQMK Trigger: TTTCATCTGTGTGCGGGGCCATGTTACTGAGAGGTG...TAAAGGTGTGCACCACCACACCTTAATGATGATCCTATAAGTATTCCTAAAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS TCA 90 bp | CTGGGCCCACAGCAAATGTGGCCCAGCGCTTCACCTCTGAGCCAATaGCCTCCTCGGTCAAGTCTTTCACTTCACCCCAAGAGCAGCCGG | + |
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Preference number: 5 (lower is better) Translates to: LGPQQMWPSASPLSQ*PPRSSLSLHPKSSR Trigger: CCGGCTGCTCTTGGGGTGAAGTGAAAGACTTGACCGAGGAGGTCATTGGCTCAGAGGTGAAGCGCTGGGCCACATTTGCTGTGGGCCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS CCA 90 bp | CCAGCCGTCCCAGCCACTTCGGCCACTTGGCACTCCCCTGTCACCTaGGGCTCAATGAACTTGCCATGGTGCCATGTGACTCCAAAGTCA | + |
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Preference number: 5 (lower is better) Translates to: PAVPATSATWHSPVT*GSMNLPWCHVTPKS Trigger: TGACTTTGGAGTCACATGGCACCATGGCAAGTTCATTGAGCCCCAGGTGACAGGGGAGTGCCAAGTGGCCGAAGTGGCTGGGACGGCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS CCA 90 bp | CCACCAAGTCCTGTTCTTCCACAACAGCCAGATCAGAGTAGCCACTaGGCCCACGGTTCAAGATCCACGGGCGGGACCAGCAGTTCACCT | + |
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Preference number: 5 (lower is better) Translates to: PPSPVLPQQPDQSSH*AHGSRSTGGTSSSP Trigger: AGGTGAACTGCTGGTCCCGCCCGTGGATCTTGAACCGTGGGCCCAGTGGCTACTCTGATCTGGCTGTTGTGGAAGAACAGGACTTGGTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS TCA 90 bp | GCCATGACCTGGGCCCACAGCAAATGTGGCCCAGCGCTTCACCTCTaGGCCAATGACCTCCTCGGTCAAGTCTTTCACTTCACCCCAAGA | + |
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Preference number: 5 (lower is better) Translates to: AMTWAHSKCGPALHL*ANDLLGQVFHFTPR Trigger: TCTTGGGGTGAAGTGAAAGACTTGACCGAGGAGGTCATTGGCTCAGAGGTGAAGCGCTGGGCCACATTTGCTGTGGGCCCAGGTCATGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS CCA 90 bp | GGTACACACGGCCAGTATTTTTCTCCCACACAGGGCAGGGGTTCATaGTGCGATGCCCAGGTAATGTGGCCTCCATCAGTAGCCGTTGGG | + |
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Preference number: 5 (lower is better) Translates to: GTHGQYFSPTQGRGS*CDAQVMWPPSVAVG Trigger: CCCAACGGCTACTGATGGAGGCCACATTACCTGGGCATCGCACCATGAACCCCTGCCCTGTGTGGGAGAAAAATACTGGCCGTGTGTACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS CCA 90 bp | GCAGCCACCACTATCAGTACTAAAAGCCTCTGCTCGAAATCGGCTTaGTGTTCGGGCACTGCAGTAGAGCACAGGGTTACCAGCCGTCCC | + |
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Preference number: 5 (lower is better) Translates to: AATTISTKSLCSKSA*CSGTAVEHRVTSRP Trigger: GGGACGGCTGGTAACCCTGTGCTCTACTGCAGTGCCCGAACACCAAGCCGATTTCGAGCAGAGGCTTTTAGTACTGATAGTGGTGGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CAA 90 bp | ACCATCTCAGGAAGATCACCTGCTAGCTCTGAGCCTCCCCTAGATGGCTCCTGGTCGAGGCTCATGGAGTaGTGGGTTCAGGGTTGGCTT | + |
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Preference number: 5 (lower is better) Translates to: TISGRSPASSEPPLDGSWSRLME*WVQGWL Trigger: AAGCCAACCCTGAACCCACAACTCCATGAGCCTCGA...CCAGGAGCCATCTAGGGGAGGCTCAGAGCTAGCAGGTGATCTTCCTGAGATGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS CCA 90 bp | ACCTTGGCAGCCGGTTCGAGGCTCATGGAGTTGTGGGTTCAGGGTTaGCTTCTGAAAGCAGCCACCACTATCAGTACTAAAAGCCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: TLAAGSRLMELWVQG*LLKAATTISTKSLC Trigger: GCAGAGGCTTTTAGTACTGATAGTGGTGGCTGCTTTCAGAAGCCAACCCTGAACCCACAACTCCATGAGCCTCGAACCGGCTGCCAAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS CCA 90 bp | GCTCACTACACTACCTTGGCAGCCGGTTCGAGGCTCATGGAGTTGTaGGTTCAGGGTTGGCTTCTGAAAGCAGCCACCACTATCAGTACT | + |
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Preference number: 5 (lower is better) Translates to: AHYTTLAAGSRLMEL*VQGWLLKAATTIST Trigger: AGTACTGATAGTGGTGGCTGCTTTCAGAAGCCAACCCTGAACCCACAACTCCATGAGCCTCGAACCGGCTGCCAAGGTAGTGTAGTGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS GCA 90 bp | GGTTGGCTTCTGAAAGCAGCCACCACTATCAGTACTAAAAGCCTCTaGTCGAAATCGGCTTGGTGTTCGGGCACTGCAGTAGAGCACAGG | + |
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Preference number: 5 (lower is better) Translates to: GWLLKAATTISTKSL*SKSAWCSGTAVEHR Trigger: CCTGTGCTCTACTGCAGTGCCCGAACACCAAGCCGATTTCGAGCAGAGGCTTTTAGTACTGATAGTGGTGGCTGCTTTCAGAAGCCAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CAA 90 bp | AGCACATGGCCTCTCCTTTTAATGGGAAGAGAAGAGATTCAAACTCCCAGTTCAAGCCACTTCGGCCACTaGGCACTCCCCTGTCACCTG | + |
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Preference number: 5 (lower is better) Translates to: STWPLLLMGREEIQTPSSSHFGH*ALPCHL Trigger: CAGGTGACAGGGGAGTGCCAAGTGGCCGAAGTGGCT...TGAACTGGGAGTTTGAATCTCTTCTCTTCCCATTAAAAGGAGAGGCCATGTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CAA 90 bp | GAAATCTTTCCTATAATGTTGTCCTTTGGCCTTGCTTGGAAGGGCTCATGGTTCATCAGGGAATGGGGCTaGACTGAACACGCAAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: EIFPIMLSFGLAWKGSWFIREWG*TEHAKQ Trigger: CTGCTTTGCGTGTTCAGTCAAGCCCCATTCCCTGAT...GAACCATGAGCCCTTCCAAGCAAGGCCAAAGGACAACATTATAGGAAAGATTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CAA 90 bp | AATTTTAGGAATACTTATAGGATCATCATTAAGGTGTGGTGGTGCACACCTTTATGGGGCTCAATGAACTaGCCATGGTGCCATGTGACT | + |
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Preference number: 5 (lower is better) Translates to: NFRNTYRIIIKVWWCTPLWGSMN*PWCHVT Trigger: AGTCACATGGCACCATGGCAAGTTCATTGAGCCCCA...TAAAGGTGTGCACCACCACACCTTAATGATGATCCTATAAGTATTCCTAAAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CAA 90 bp | TCTATCTCAGAAGTAATTATGACATGTGAAGACTGGCAGAGTTCTCACTGTAGTAGTACAAGAGCCATGTaGCTGATGGTGTTTCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: SISEVIMTCEDWQSSHCSSTRAM*LMVFQL Trigger: GAGCTGAAACACCATCAGCAACATGGCTCTTGTACT...ACTACAGTGAGAACTCTGCCAGTCTTCACATGTCATAATTACTTCTGAGATAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS-3UTR CAA 90 bp | AATTTTAGGAATACTTATAGGATCATCATTAAGGTGTGGTGGTGCACACCTTTAAGTCTTGATAGGTATTaGGCATCTTCAAAGGCCGGA | + |
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Preference number: 5 (lower is better) Translates to: NFRNTYRIIIKVWWCTPLSLDRY*ASSKAG Trigger: TCCGGCCTTTGAAGATGCCAAATACCTATCAAGACT...TAAAGGTGTGCACCACCACACCTTAATGATGATCCTATAAGTATTCCTAAAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS CCA 72 bp | CCTGTTCTTCCACAACAGCCAGATCAGAGTAGCCACTaGGCCCACGGTTCAAGATCCACGGGCGGGACCAGC | + |
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Preference number: 6 (lower is better) Translates to: PVLPQQPDQSSH*AHGSRSTGGTS Trigger: GCTGGTCCCGCCCGTGGATCTTGAACCGTGGGCCCAGTGGCTACTCTGATCTGGCTGTTGTGGAAGAACAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS GCA 72 bp | AAGCCTCTGCTCGAAATCGGCTTGGTGTTCGGGCACTaGAGTAGAGCACAGGGTTACCAGCCGTCCCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: KPLLEIGLVFGH*SRAQGYQPSQP Trigger: TGGCTGGGACGGCTGGTAACCCTGTGCTCTACTGCAGTGCCCGAACACCAAGCCGATTTCGAGCAGAGGCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS CCA 72 bp | CCAGCCACTTCGGCCACTTGGCACTCCCCTGTCACCTaGGGCTCAATGAACTTGCCATGGTGCCATGTGACT | + |
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Preference number: 6 (lower is better) Translates to: PATSATWHSPVT*GSMNLPWCHVT Trigger: AGTCACATGGCACCATGGCAAGTTCATTGAGCCCCAGGTGACAGGGGAGTGCCAAGTGGCCGAAGTGGCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS TCA 72 bp | TGGGCCCACAGCAAATGTGGCCCAGCGCTTCACCTCTaGGCCAATGACCTCCTCGGTCAAGTCTTTCACTTC | + |
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Preference number: 6 (lower is better) Translates to: WAHSKCGPALHL*ANDLLGQVFHF Trigger: GAAGTGAAAGACTTGACCGAGGAGGTCATTGGCTCAGAGGTGAAGCGCTGGGCCACATTTGCTGTGGGCCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS CCA 72 bp | ACTACCTTGGCAGCCGGTTCGAGGCTCATGGAGTTGTaGGTTCAGGGTTGGCTTCTGAAAGCAGCCACCACT | + |
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Preference number: 6 (lower is better) Translates to: TTLAAGSRLMEL*VQGWLLKAATT Trigger: AGTGGTGGCTGCTTTCAGAAGCCAACCCTGAACCCACAACTCCATGAGCCTCGAACCGGCTGCCAAGGTAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS CCA 72 bp | GGCCAGTATTTTTCTCCCACACAGGGCAGGGGTTCATaGTGCGATGCCCAGGTAATGTGGCCTCCATCAGTA | + |
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Preference number: 6 (lower is better) Translates to: GQYFSPTQGRGS*CDAQVMWPPSV Trigger: TACTGATGGAGGCCACATTACCTGGGCATCGCACCATGAACCCCTGCCCTGTGTGGGAGAAAAATACTGGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS CAA 90 bp | GAAGCTCACTACACTACCTTGGCAGCCGGTTCGAGGCTCATGGAGTaGTGGGTTCAGGGTTGGCTTCTGAAAGCAGCCACCACTATCAGT | + |
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Preference number: 6 (lower is better) Translates to: EAHYTTLAAGSRLME*WVQGWLLKAATTIS Trigger: ACTGATAGTGGTGGCTGCTTTCAGAAGCCAACCCTGAACCCACAACTCCATGAGCCTCGAACCGGCTGCCAAGGTAGTGTAGTGAGCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS CAA 72 bp | ACTTGGCACTCCCCTGTCACCTGGGGCTCAATGAACTaGCCATGGTGCCATGTGACTCCAAAGTCATCACTG | + |
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Preference number: 6 (lower is better) Translates to: TWHSPVTWGSMN*PWCHVTPKSSL Trigger: CAGTGATGACTTTGGAGTCACATGGCACCATGGCAAGTTCATTGAGCCCCAGGTGACAGGGGAGTGCCAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS TCA 72 bp | CGAGGCTCATGGAGTTGTGGGTTCAGGGTTGGCTTCTaGAAGCAGCCACCACTATCAGTACTAAAAGCCTCT | + |
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Preference number: 6 (lower is better) Translates to: RGSWSCGFRVGF*KQPPLSVLKAS Trigger: AGAGGCTTTTAGTACTGATAGTGGTGGCTGCTTTCAGAAGCCAACCCTGAACCCACAACTCCATGAGCCTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS GCA 72 bp | CTGAAAGCAGCCACCACTATCAGTACTAAAAGCCTCTaGTCGAAATCGGCTTGGTGTTCGGGCACTGCAGTA | + |
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Preference number: 6 (lower is better) Translates to: LKAATTISTKSL*SKSAWCSGTAV Trigger: TACTGCAGTGCCCGAACACCAAGCCGATTTCGAGCAGAGGCTTTTAGTACTGATAGTGGTGGCTGCTTTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS CAA 72 bp | CGGGAGCACCTTTGCCAATTGAGTCTTGATAGGTATTaGGCATCTTCAAAGGCCGGAAGCTCACTACACTAC | + |
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Preference number: 6 (lower is better) Translates to: REHLCQLSLDRY*ASSKAGSSLHY Trigger: GTAGTGTAGTGAGCTTCCGGCCTTTGAAGATGCCAAATACCTATCAAGACTCAATTGGCAAAGGTGCTCCCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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| CDS TCA 72 bp | CAAAGTCATCACTGTAGATCATCAGGGAATGGGGCTTaGCTGAACACGCAAAGCAGAGAAACCAACGTGAGA | + |
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Preference number: 6 (lower is better) Translates to: QSHHCRSSGNGA*LNTQSRETNVR Trigger: TCTCACGTTGGTTTCTCTGCTTTGCGTGTTCAGTCAAGCCCCATTCCCTGATGATCTACAGTGATGACTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036331.7 |
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