Pregenerated sensors for NENF (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037499

Ensembl transcript IDs: ENSMUST00000046770.10

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	GAGGGACACTTAACTCCTGTCCCCTCACTTCTCCCTAGAACCGGCTGCTTCTCACCAGCTCCTCCTCGGTaGAGAGCCGCACCGGGGGCC	+
Preference number: 4 (lower is better) Translates to: EGHLTPVPSLLPRTGCFSPAPPR*RAAPGA Trigger: GGCCCCCGGTGCGGCTCTTCACCGAGGAGGAGCTGG...TGAGAAGCAGCCGGTTCTAGGGAGAAGTGAGGGGACAGGAGTTAAGTGTCCCTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046770.10
CDS-3UTR GCA 90 bp	GGACACTTAACTCCTGTCCCCTCACTTCTCCCTAGAACCGGCTGCTTCTCAGCTTCTTGGCCACACCTCTaGTGGAGTCCTTCCCGGCCA	+
Preference number: 4 (lower is better) Translates to: GHLTPVPSLLPRTGCFSASWPHL*WSPSRP Trigger: TGGCCGGGAAGGACTCCAGCAGAGGTGTGGCCAAGA...AGCTGAGAAGCAGCCGGTTCTAGGGAGAAGTGAGGGGACAGGAGTTAAGTGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046770.10
CDS-3UTR TCA 90 bp	GAGGGACACTTAACTCCTGTCCCCTCACTTCTCCCTAGAACCGGCTGCTTCTCAACTCCTTCCCAGAGGTaGCATCGAACACCACTCCCT	+
Preference number: 4 (lower is better) Translates to: EGHLTPVPSLLPRTGCFSTPSQR*HRTPLP Trigger: AGGGAGTGGTGTTCGATGTCACCTCTGGGAAGGAGT...TGAGAAGCAGCCGGTTCTAGGGAGAAGTGAGGGGACAGGAGTTAAGTGTCCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046770.10
CDS-3UTR TCA 90 bp	CACTTAACTCCTGTCCCCTCACTTCTCCCTAGAACCGGCTGCTTCTCAGCTAGAGTCTGCTGGATCCAGTaGCATCTTGGCCACACCTCT	+
Preference number: 4 (lower is better) Translates to: HLTPVPSLLPRTGCFSARVCWIQ*HLGHTS Trigger: AGAGGTGTGGCCAAGATGTCACTGGATCCAGCAGAC...TCTAGCTGAGAAGCAGCCGGTTCTAGGGAGAAGTGAGGGGACAGGAGTTAAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046770.10
CDS-3UTR TCA 90 bp	TCCCAGTTAAACATTCGCTTTATTCAGCTGCAGGGCACTCGGAGGCTTCCTCCGAGACCAGTAGTGTCGTaGGTGAGGTCTGCTGGATCC	+
Preference number: 4 (lower is better) Translates to: SQLNIRFIQLQGTRRLPPRPVVS*VRSAGS Trigger: GGATCCAGCAGACCTCACTCACGACACTACTGGTCT...CGGAGGAAGCCTCCGAGTGCCCTGCAGCTGAATAAAGCGAATGTTTAACTGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046770.10
CDS GCA 90 bp	GTGAAGAGCCGCACCGGGGGCCCGCGCTCTGCGGGGCGCGGCGTCTaGCCAGCCCAGGCTGAGGGCACTGGGACCAGAGCCAGCGCCAGG	+
Preference number: 5 (lower is better) Translates to: VKSRTGGPRSAGRGV*PAQAEGTGTRASAR Trigger: CCTGGCGCTGGCTCTGGTCCCAGTGCCCTCAGCCTGGGCTGGGCAGACGCCGCGCCCCGCAGAGCGCGGGCCCCCGGTGCGGCTCTTCAC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046770.10
CDS TCA 90 bp	GGCCGTGAGACCAGTAGTGTCGTGAGTGAGGTCTGCTGGATCCAGTaGCATCTTGGCCACACCTCTGCTGGAGTCCTTCCCGGCCAAGGC	+
Preference number: 5 (lower is better) Translates to: GRETSSVVSEVCWIQ*HLGHTSAGVLPGQG Trigger: GCCTTGGCCGGGAAGGACTCCAGCAGAGGTGTGGCCAAGATGTCACTGGATCCAGCAGACCTCACTCACGACACTACTGGTCTCACGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046770.10
CDS-3UTR CAA 90 bp	TCCCAGTTAAACATTCGCTTTATTCAGCTGCAGGGCACTCGGAGGCTTCCTCCGAGGGCCTCCAGCTCCTaGGCCGTGAGACCAGTAGTG	+
Preference number: 5 (lower is better) Translates to: SQLNIRFIQLQGTRRLPPRASSS*AVRPVV Trigger: CACTACTGGTCTCACGGCCAAGGAGCTGGAGGCCCT...CGGAGGAAGCCTCCGAGTGCCCTGCAGCTGAATAAAGCGAATGTTTAACTGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046770.10
CDS-3UTR CAA 90 bp	TCCCAGTTAAACATTCGCTTTATTCAGCTGCAGGGCACTCGGAGGCTTCCTCCGGGGCTGCCATCCTCGTaGAGGATCCTTCGGGCTGTG	+
Preference number: 5 (lower is better) Translates to: SQLNIRFIQLQGTRRLPPGLPSS*RILRAV Trigger: CACAGCCCGAAGGATCCTCAACGAGGATGGCAGCCC...CGGAGGAAGCCTCCGAGTGCCCTGCAGCTGAATAAAGCGAATGTTTAACTGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046770.10
CDS-3UTR CAA 90 bp	GAGGGACACTTAACTCCTGTCCCCTCACTTCTCCCTAGAACCGGCTGCTTCTCACCAACAATGGGGTACTaGGCTTTGTACACCTTGCTG	+
Preference number: 5 (lower is better) Translates to: EGHLTPVPSLLPRTGCFSPTMGY*ALYTLL Trigger: CAGCAAGGTGTACAAAGCCAAGTACCCCATTGTTGG...TGAGAAGCAGCCGGTTCTAGGGAGAAGTGAGGGGACAGGAGTTAAGTGTCCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046770.10
CDS TCA 72 bp	CCTCCTCGCCGCCGTAGCGGGCCAGCTCCTCCTCGGTaGAGAGCCGCACCGGGGGCCCGCGCTCTGCGGGGC	+
Preference number: 6 (lower is better) Translates to: PPRRRSGPAPPR*RAAPGARALRG Trigger: GCCCCGCAGAGCGCGGGCCCCCGGTGCGGCTCTTCACCGAGGAGGAGCTGGCCCGCTACGGCGGCGAGGAGG 79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046770.10
CDS TCA 72 bp	ACCAGTAGTGTCGTGAGTGAGGTCTGCTGGATCCAGTaGCATCTTGGCCACACCTCTGCTGGAGTCCTTCCC	+
Preference number: 6 (lower is better) Translates to: TSSVVSEVCWIQ*HLGHTSAGVLP Trigger: GGGAAGGACTCCAGCAGAGGTGTGGCCAAGATGTCACTGGATCCAGCAGACCTCACTCACGACACTACTGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046770.10

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