RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NEK9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034290

Ensembl transcript IDs: ENSMUST00000040992.8

Found 213 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGCAAAGCCAGGAAAGCTGCTCTCTGCACTCAGTAAGTGTGCGGTaGAGTTCTTTGGGTCCCAGTTTCCTGAGGGCTATGTGGGCTCAG +
Preference number: 1 (lower is better)
Translates to: EQSQESCSLHSVSVR*SSLGPSFLRAMWAQ
Trigger: CTGAGCCCACATAGCCCTCAGGAAACTGGGACCCAAAGAACTTCACCGCACACTTACTGAGTGCAGAGAGCAGCTTTCCTGGCTTTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR TCA 90 bp ACGCTACCACTAAGTTTTCTTGGACTCCAGGCTTCTGAGAGGGCATaGATACTTTCCACTCTCTGGAGGACCCTGGGCAGCCCACTCCAT +
Preference number: 1 (lower is better)
Translates to: TLPLSFLGLQASERA*ILSTLWRTLGSPLH
Trigger: ATGGAGTGGGCTGCCCAGGGTCCTCCAGAGAGTGGAAAGTATTCATGCCCTCTCAGAAGCCTGGAGTCCAAGAAAACTTAGTGGTAGCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR GCA 90 bp TCCTCTTCAAAGGTGGGCTCAGAAGATGAGGTACAGAGCTGCTGTTaGTATGGCAACACTGATGACAAAGCCAGGTCCACAGGACCCTTC +
Preference number: 1 (lower is better)
Translates to: SSSKVGSEDEVQSCC*YGNTDDKARSTGPF
Trigger: GAAGGGTCCTGTGGACCTGGCTTTGTCATCAGTGTTGCCATAGCAACAGCAGCTCTGTACCTCATCTTCTGAGCCCACCTTTGAAGAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR CCA 90 bp AGGCTTCTGAGAGGGCATGAATACTTTCCACTCTCTGGAGGACCCTaGGCAGCCCACTCCATTTTTATATTTTCCTTCATCCATCCAGAT +
Preference number: 1 (lower is better)
Translates to: RLLRGHEYFPLSGGP*AAHSIFIFSFIHPD
Trigger: ATCTGGATGGATGAAGGAAAATATAAAAATGGAGTGGGCTGCCCAGGGTCCTCCAGAGAGTGGAAAGTATTCATGCCCTCTCAGAAGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR TCA 90 bp CGTCAGGTTTGGGCTTTCCCCTATTCTAGGAATAAGCCTCAGTGCTaGAAGCAGTACCACTGTACTGTGCTTCTCAGAACTGAGAAAACA +
Preference number: 1 (lower is better)
Translates to: RQVWAFPYSRNKPQC*KQYHCTVLLRTEKT
Trigger: TGTTTTCTCAGTTCTGAGAAGCACAGTACAGTGGTACTGCTTTCAGCACTGAGGCTTATTCCTAGAATAGGGGAAAGCCCAAACCTGACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR TCA 90 bp TCCCAAAGCAGCTTCCAATTAGTGATGAGAATGATAAACAGAAAATaGGCTGCTACCAGTGCAGTTAAGGTGAGTGCTGTGTCTCCTCTT +
Preference number: 1 (lower is better)
Translates to: SQSSFQLVMRMINRK*AATSAVKVSAVSPL
Trigger: AAGAGGAGACACAGCACTCACCTTAACTGCACTGGTAGCAGCTCATTTTCTGTTTATCATTCTCATCACTAATTGGAAGCTGCTTTGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR GCA 90 bp ACCAGCCTCTATACCACTAGCTTAAGGAAATGGCAAAATTTCTCCTaGATAGGTAGGTCCTCCTGCAATATTAAGAGAGATAGCCAACCT +
Preference number: 1 (lower is better)
Translates to: TSLYTTSLRKWQNFS*IGRSSCNIKRDSQP
Trigger: AGGTTGGCTATCTCTCTTAATATTGCAGGAGGACCTACCTATGCAGGAGAAATTTTGCCATTTCCTTAAGCTAGTGGTATAGAGGCTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR GCA 90 bp TGTAACTCAAAGCAACACTACCGGCAAGCTTCAAACACAGAGCACTaGATAGAGGATAAACAGGACAATTTACGAAGATTTAGCTATAGA +
Preference number: 1 (lower is better)
Translates to: CNSKQHYRQASNTEH*IEDKQDNLRRFSYR
Trigger: TCTATAGCTAAATCTTCGTAAATTGTCCTGTTTATCCTCTATGCAGTGCTCTGTGTTTGAAGCTTGCCGGTAGTGTTGCTTTGAGTTACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR TCA 90 bp CAGAGCTGCCCATCCTCAGAGGTGGGACTTCCTCCCAGCACCAGCCTCTATACCCAAGGAAAGTGCTTTTaGGCCTCCTTCTGCCCTGCA +
Preference number: 2 (lower is better)
Translates to: QSCPSSEVGLPPSTSLYTQGKCF*ASFCPA
Trigger: TGCAGGGCAGAAGGAGGCTCAAAAGCACTTTCCTTG...GGTATAGAGGCTGGTGCTGGGAGGAAGTCCCACCTCTGAGGATGGGCAGCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR CCA 90 bp CCCACAGCTCGACATACTCCCCGAGGAGGGTGTAGACATCTTGTGTCTTGGAGGCTCTCTGGAGGACCCTaGGCAGCCCACTCCATTTTT +
Preference number: 2 (lower is better)
Translates to: PTARHTPRGGCRHLVSWRLSGGP*AAHSIF
Trigger: AAAAATGGAGTGGGCTGCCCAGGGTCCTCCAGAGAG...CCTCCAAGACACAAGATGTCTACACCCTCCTCGGGGAGTATGTCGAGCTGTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR TCA 90 bp TCTCTTCTAGGACATACACTGTCCTTGGAGAAGGTGGCTGCTCCTCTCAACAAGTGGGTCCCAGTTTCCTaGGGGCTATGTGGGCTCAGG +
Preference number: 2 (lower is better)
Translates to: SLLGHTLSLEKVAAPLNKWVPVS*GLCGLR
Trigger: CCTGAGCCCACATAGCCCTCAGGAAACTGGGACCCA...CTTGTTGAGAGGAGCAGCCACCTTCTCCAAGGACAGTGTATGTCCTAGAAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR TCA 90 bp TCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTACCTCCGCTTCTGAGAGGGCATaGATACTTTCCACTCTCTGG +
Preference number: 2 (lower is better)
Translates to: SLRSSQIARQGTVGRVTSASERA*ILSTLW
Trigger: CCAGAGAGTGGAAAGTATTCATGCCCTCTCAGAAGC...GGAGGTAACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR TCA 90 bp CTTCCCAGCTTCAGGCTAACAATAAGCTGGCTCTTCAGCCAAGTGTTGGCACAGGCCTCTCAGGCCTGCTaGGATGGTAAGCGTAAGGAT +
Preference number: 2 (lower is better)
Translates to: LPSFRLTISWLFSQVLAQASQAC*DGKRKD
Trigger: ATCCTTACGCTTACCATCTCAGCAGGCCTGAGAGGC...CTGTGCCAACACTTGGCTGAAGAGCCAGCTTATTGTTAGCCTGAAGCTGGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR GCA 90 bp GGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACACTACCGGCAAGCCACTGGACAGAGCTaGCCATCCTCAGAGGTGGGA +
Preference number: 2 (lower is better)
Translates to: GTEDKRRLYCNSKQHYRQATGQS*PSSEVG
Trigger: TCCCACCTCTGAGGATGGGCAGCTCTGTCCAGTGGC...TTGCCGGTAGTGTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR TCA 90 bp CAGCTCCAGAGCAGAAGCAATGCTCGTACTGAACACCTTAAACCCTGCCTCTCACCAGTGCAGTTAAGGTaGGTGCTGTGTCTCCTCTTC +
Preference number: 2 (lower is better)
Translates to: QLQSRSNARTEHLKPCLSPVQLR*VLCLLF
Trigger: GAAGAGGAGACACAGCACTCACCTTAACTGCACTGG...TGAGAGGCAGGGTTTAAGGTGTTCAGTACGAGCATTGCTTCTGCTCTGGAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR GCA 90 bp TCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTACCTCCGTACAGAGCTGCTGTTaGTATGGCAACACTGATGAC +
Preference number: 2 (lower is better)
Translates to: SLRSSQIARQGTVGRVTSVQSCC*YGNTDD
Trigger: GTCATCAGTGTTGCCATAGCAACAGCAGCTCTGTAC...GGAGGTAACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR TCA 90 bp CTTCCCAGCTTCAGGCTAACAATAAGCTGGCTCTTCAGCCAAGTGTTGGCACAGTCAGTAAGTGTGCGGTaGAGTTCTTTGGGTCCCAGT +
Preference number: 2 (lower is better)
Translates to: LPSFRLTISWLFSQVLAQSVSVR*SSLGPS
Trigger: ACTGGGACCCAAAGAACTTCACCGCACACTTACTGA...CTGTGCCAACACTTGGCTGAAGAGCCAGCTTATTGTTAGCCTGAAGCTGGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR GCA 90 bp AAGGGCAGTATCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGATGAGGTACAGAGCTaGTGTTGCTATGGCAACACT +
Preference number: 2 (lower is better)
Translates to: KGSITEVLPDSKARHCRKDEVQS*CCYGNT
Trigger: AGTGTTGCCATAGCAACAGCAGCTCTGTACCTCATC...CTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGATACTGCCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR GCA 90 bp AGCCAAGTGTTGGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACGTCGTGATGAGGGCCTaGCCTTTCTCTGCTCCTCAC +
Preference number: 2 (lower is better)
Translates to: SQVLAQRINAGYTVTQSNVVMRA*PFSAPH
Trigger: GTGAGGAGCAGAGAAAGGGCAGGCCCTCATCACGAC...GTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCCAACACTTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR GCA 90 bp CTGTGTGTAGTACAGAGGATATGGTACTTATCAAAGGAGCTGCTGTGGCCTCAAGACAAAGACAGGGAGTaGCCAGGGCTGCTCATCCCA +
Preference number: 2 (lower is better)
Translates to: LCVVQRIWYLSKELLWPQDKDRE*PGLLIP
Trigger: TGGGATGAGCAGCCCTGGGCACTCCCTGTCTTTGTC...TTGAGGCCACAGCAGCTCCTTTGATAAGTACCATATCCTCTGTACTACACACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR GCA 90 bp AGCCAAGTGTTGGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACCTGCCTGCCTCAGCATaGACTGTCACCCCACAGTCA +
Preference number: 2 (lower is better)
Translates to: SQVLAQRINAGYTVTQSNLPASA*TVTPQS
Trigger: TGACTGTGGGGTGACAGTGCATGCTGAGGCAGGCAG...GTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCCAACACTTGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR TCA 90 bp TCTCTTCTAGGACATACACTGTCCTTGGAGAAGGTGGCTGCTCCTCTCAACAAGTGGACTCCAGGCTTCTaGGAGGGCATGAATACTTTC +
Preference number: 2 (lower is better)
Translates to: SLLGHTLSLEKVAAPLNKWTPGF*EGMNTF
Trigger: GAAAGTATTCATGCCCTCTCAGAAGCCTGGAGTCCA...CTTGTTGAGAGGAGCAGCCACCTTCTCCAAGGACAGTGTATGTCCTAGAAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR TCA 90 bp AACACAAGCAATCCATTAGACTTGGTGGAAGTGCAAGGCTCACATTTAAGGGAAGGGTTACCTCCCCCTTaGCTTTCCCCCACAGCTCGA +
Preference number: 2 (lower is better)
Translates to: NTSNPLDLVEVQGSHLREGLPPP*LSPTAR
Trigger: TCGAGCTGTGGGGGAAAGTCAAGGGGGAGGTAACCC...TTCCCTTAAATGTGAGCCTTGCACTTCCACCAAGTCTAATGGATTGCTTGTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR GCA 90 bp CTTCCCAGCTTCAGGCTAACAATAAGCTGGCTCTTCAGCCAAGTGTTGGCACAGTGGCAAAATTTCTCCTaGATAGGTAGGTCCTCCTGC +
Preference number: 2 (lower is better)
Translates to: LPSFRLTISWLFSQVLAQWQNFS*IGRSSC
Trigger: GCAGGAGGACCTACCTATGCAGGAGAAATTTTGCCA...CTGTGCCAACACTTGGCTGAAGAGCCAGCTTATTGTTAGCCTGAAGCTGGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR CCA 90 bp GGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACACTACCGGCAAGTGACCCCAAGGATTTaGTGCTGGCTTTGGGCTTCT +
Preference number: 2 (lower is better)
Translates to: GTEDKRRLYCNSKQHYRQVTPRI*CWLWAS
Trigger: AGAAGCCCAAAGCCAGCACCAAATCCTTGGGGTCAC...TTGCCGGTAGTGTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR GCA 90 bp CTGTGTGTAGTACAGAGGATATGGTACTTATCAAAGGAGCTGCTGTGGCCTCAAGGCCTGCCCTTTCTCTaGTCCTCACTGAAGCTTCAA +
Preference number: 2 (lower is better)
Translates to: LCVVQRIWYLSKELLWPQGLPFL*SSLKLQ
Trigger: TTGAAGCTTCAGTGAGGAGCAGAGAAAGGGCAGGCC...TTGAGGCCACAGCAGCTCCTTTGATAAGTACCATATCCTCTGTACTACACACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR CAA 90 bp CTTCCCAGCTTCAGGCTAACAATAAGCTGGCTCTTCAGCCAAGTGTaGGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAAC +
Preference number: 2 (lower is better)
Translates to: LPSFRLTISWLFSQV*AQRINAGYTVTQSN
Trigger: GTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCCAACACTTGGCTGAAGAGCCAGCTTATTGTTAGCCTGAAGCTGGGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR CCA 90 bp GGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACACTACCGGCAATCTCCTCTTCAAAGGTaGGCTCAGAAGATGAGGTAC +
Preference number: 2 (lower is better)
Translates to: GTEDKRRLYCNSKQHYRQSPLQR*AQKMRY
Trigger: GTACCTCATCTTCTGAGCCCACCTTTGAAGAGGAGA...TTGCCGGTAGTGTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR GCA 90 bp GGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACACTACCGGCAAATGTGCAATGCCTGGTaGTTAAATCCCAAAGCAGCT +
Preference number: 2 (lower is better)
Translates to: GTEDKRRLYCNSKQHYRQMCNAW*LNPKAA
Trigger: AGCTGCTTTGGGATTTAAGCACCAGGCATTGCACAT...TTGCCGGTAGTGTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR CAA 90 bp CTACTCGGCAGGTTCTATCTGTCAAGCTTTTGTGACCCCAAGGATTaGGTGCTGGCTTTGGGCTTCTCAAGTACAAAGATGATACTGATT +
Preference number: 2 (lower is better)
Translates to: LLGRFYLSSFCDPKD*VLALGFSSTKMILI
Trigger: AATCAGTATCATCTTTGTACTTGAGAAGCCCAAAGCCAGCACCAAATCCTTGGGGTCACAAAAGCTTGACAGATAGAACCTGCCGAGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR TCA 90 bp CTTCCTCCCAGCACCAGCCTCTATACCACTAGCTTAAGGAAATGGCAAAATTTCCTGATTTACTGGGTATaGCATGGCTCCAAAACACAC +
Preference number: 2 (lower is better)
Translates to: LPPSTSLYTTSLRKWQNFLIYWV*HGSKTH
Trigger: GTGTGTTTTGGAGCCATGTCATACCCAGTAAATCAG...GAAATTTTGCCATTTCCTTAAGCTAGTGGTATAGAGGCTGGTGCTGGGAGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR TCA 90 bp CCTATTCTAGGAATAAGCCTCAGTGCTGAAAGCAGTACCACTGTACTGTGCTTCATGCCACTCTCCAAATaGACAAGGAAAGTGCTTTTG +
Preference number: 2 (lower is better)
Translates to: PILGISLSAESSTTVLCFMPLSK*TRKVLL
Trigger: CAAAAGCACTTTCCTTGTTCATTTGGAGAGTGGCAT...GAAGCACAGTACAGTGGTACTGCTTTCAGCACTGAGGCTTATTCCTAGAATAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR CCA 90 bp CTGTGTGTAGTACAGAGGATATGGTACTTATCAAAGGAGCTGCTGTGGCCTCAAATTTGGTGCTGGCTTTaGGCTTCTCAAGTACAAAGA +
Preference number: 2 (lower is better)
Translates to: LCVVQRIWYLSKELLWPQIWCWL*ASQVQR
Trigger: TCTTTGTACTTGAGAAGCCCAAAGCCAGCACCAAAT...TTGAGGCCACAGCAGCTCCTTTGATAAGTACCATATCCTCTGTACTACACACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR GCA 72 bp GAGCACGGCTCCCTAGGATTCCTGCCTGCCTCAGCATaGACTGTCACCCCACAGTCAGCAACATGCCCACAC +
Preference number: 3 (lower is better)
Translates to: EHGSLGFLPASA*TVTPQSATCPH
Trigger: GTGTGGGCATGTTGCTGACTGTGGGGTGACAGTGCATGCTGAGGCAGGCAGGAATCCTAGGGAGCCGTGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR GCA 72 bp GCCTCAGCATGCACTGTCACCCCACAGTCAGCAACATaGCCACACCCCTCAGCTCCAGAGCAGAAGCAATGC +
Preference number: 3 (lower is better)
Translates to: ASACTVTPQSAT*PHPSAPEQKQC
Trigger: GCATTGCTTCTGCTCTGGAGCTGAGGGGTGTGGGCATGTTGCTGACTGTGGGGTGACAGTGCATGCTGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR CCA 72 bp CATACTCCCCGAGGAGGGTGTAGACATCTTGTGTCTTaGAGGGAGGCACCCCCACCCTGTACTGACTGTAGC +
Preference number: 3 (lower is better)
Translates to: HTPRGGCRHLVS*REAPPPCTDCS
Trigger: GCTACAGTCAGTACAGGGTGGGGGTGCCTCCCTCCAAGACACAAGATGTCTACACCCTCCTCGGGGAGTATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR CCA 72 bp ATGATGCCACTGGACAGAGCTGCCCATCCTCAGAGGTaGGACTTCCTCCCAGCACCAGCCTCTATACCACTA +
Preference number: 3 (lower is better)
Translates to: MMPLDRAAHPQR*DFLPAPASIPL
Trigger: TAGTGGTATAGAGGCTGGTGCTGGGAGGAAGTCCCACCTCTGAGGATGGGCAGCTCTGTCCAGTGGCATCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR TCA 72 bp AAGGAATATACTAGAGAACCGCCGCCATGCTCTACTTaGGCACGGCTCCCTAGGATTCCTGCCTGCCTCAGC +
Preference number: 3 (lower is better)
Translates to: KEYTREPPPCST*ARLPRIPACLS
Trigger: GCTGAGGCAGGCAGGAATCCTAGGGAGCCGTGCTCAAGTAGAGCATGGCGGCGGTTCTCTAGTATATTCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR CAA 90 bp CTTCCCAGCTTCAGGCTAACAATAAGCTGGCTCTTCAGCCAAGTGTTGGCACAGTGTGACCCCAAGGATTaGGTGCTGGCTTTGGGCTTC +
Preference number: 3 (lower is better)
Translates to: LPSFRLTISWLFSQVLAQCDPKD*VLALGF
Trigger: GAAGCCCAAAGCCAGCACCAAATCCTTGGGGTCACA...CTGTGCCAACACTTGGCTGAAGAGCCAGCTTATTGTTAGCCTGAAGCTGGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR TCA 72 bp CAGGAAAGCTGCTCTCTGCACTCAGTAAGTGTGCGGTaGAGTTCTTTGGGTCCCAGTTTCCTGAGGGCTATG +
Preference number: 3 (lower is better)
Translates to: QESCSLHSVSVR*SSLGPSFLRAM
Trigger: CATAGCCCTCAGGAAACTGGGACCCAAAGAACTTCACCGCACACTTACTGAGTGCAGAGAGCAGCTTTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR TCA 72 bp CCTCCTACTCGGCAGGTTCTATCTGTCAAGCTTTTGTaGCCCCAAGGATTTGGTGCTGGCTTTGGGCTTCTC +
Preference number: 3 (lower is better)
Translates to: PPTRQVLSVKLL*PQGFGAGFGLL
Trigger: GAGAAGCCCAAAGCCAGCACCAAATCCTTGGGGTCACAAAAGCTTGACAGATAGAACCTGCCGAGTAGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR CAA 90 bp CCTATTCTAGGAATAAGCCTCAGTGCTGAAAGCAGTACCACTGTACTGTGCTTCGAGGGTGTAGACATCTaGTGTCTTGGAGGGAGGCAC +
Preference number: 3 (lower is better)
Translates to: PILGISLSAESSTTVLCFEGVDI*CLGGRH
Trigger: GTGCCTCCCTCCAAGACACAAGATGTCTACACCCTC...GAAGCACAGTACAGTGGTACTGCTTTCAGCACTGAGGCTTATTCCTAGAATAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR TCA 72 bp GACGCTACCACTAAGTTTTCTTGGACTCCAGGCTTCTaGGAGGGCATGAATACTTTCCACTCTCTGGAGGAC +
Preference number: 3 (lower is better)
Translates to: DATTKFSWTPGF*EGMNTFHSLED
Trigger: GTCCTCCAGAGAGTGGAAAGTATTCATGCCCTCTCAGAAGCCTGGAGTCCAAGAAAACTTAGTGGTAGCGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR CCA 72 bp CCCAGCACCAGCCTCTATACCACTAGCTTAAGGAAATaGCAAAATTTCTCCTGCATAGGTAGGTCCTCCTGC +
Preference number: 3 (lower is better)
Translates to: PSTSLYTTSLRK*QNFSCIGRSSC
Trigger: GCAGGAGGACCTACCTATGCAGGAGAAATTTTGCCATTTCCTTAAGCTAGTGGTATAGAGGCTGGTGCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR CCA 72 bp GCCAGACCCCTAGAACTTGTAACCTTACGTCAGGTTTaGGCTTTCCCCTATTCTAGGAATAAGCCTCAGTGC +
Preference number: 3 (lower is better)
Translates to: ARPLELVTLRQV*AFPYSRNKPQC
Trigger: GCACTGAGGCTTATTCCTAGAATAGGGGAAAGCCCAAACCTGACGTAAGGTTACAAGTTCTAGGGGTCTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR CCA 72 bp ATCCTCATCCTTCCCAGCTTCAGGCTAACAATAAGCTaGCTCTTCAGCCAAGTGTTGGCACAGAGGATAAAC +
Preference number: 3 (lower is better)
Translates to: ILILPSFRLTIS*LFSQVLAQRIN
Trigger: GTTTATCCTCTGTGCCAACACTTGGCTGAAGAGCCAGCTTATTGTTAGCCTGAAGCTGGGAAGGATGAGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR-3UTR CAA 90 bp GGATTTGGTGCTGGCTTTGGGCTTCTCAAGTACAAAGATGATACTGATTTACTGACAAGGAAAGTGCTTTaGAGCCTCCTTCTGCCCTGC +
Preference number: 3 (lower is better)
Translates to: GFGAGFGLLKYKDDTDLLTRKVL*SLLLPC
Trigger: GCAGGGCAGAAGGAGGCTCAAAAGCACTTTCCTTGT...CAGTAAATCAGTATCATCTTTGTACTTGAGAAGCCCAAAGCCAGCACCAAATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR TCA 72 bp TGGGCTTTCCCCTATTCTAGGAATAAGCCTCAGTGCTaGAAGCAGTACCACTGTACTGTGCTTCTCAGAACT +
Preference number: 3 (lower is better)
Translates to: WAFPYSRNKPQC*KQYHCTVLLRT
Trigger: AGTTCTGAGAAGCACAGTACAGTGGTACTGCTTTCAGCACTGAGGCTTATTCCTAGAATAGGGGAAAGCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR CCA 72 bp AGAGGGCATGAATACTTTCCACTCTCTGGAGGACCCTaGGCAGCCCACTCCATTTTTATATTTTCCTTCATC +
Preference number: 3 (lower is better)
Translates to: RGHEYFPLSGGP*AAHSIFIFSFI
Trigger: GATGAAGGAAAATATAAAAATGGAGTGGGCTGCCCAGGGTCCTCCAGAGAGTGGAAAGTATTCATGCCCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR TCA 72 bp GCTATAGAAAACCGTTTGAAGACATTTCTGCTGTCTTaGCTGTTACTCAACCCAGTGCATGGTTGTGACTTT +
Preference number: 3 (lower is better)
Translates to: AIENRLKTFLLS*LLLNPVHGCDF
Trigger: AAAGTCACAACCATGCACTGGGTTGAGTAACAGTCAAGACAGCAGAAATGTCTTCAAACGGTTTTCTATAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR GCA 72 bp AGACATTTCTGCTGTCTTGACTGTTACTCAACCCAGTaGATGGTTGTGACTTTTGAACTGGTTTTTGTTTGC +
Preference number: 3 (lower is better)
Translates to: RHFCCLDCYSTQ*MVVTFELVFVC
Trigger: GCAAACAAAAACCAGTTCAAAAGTCACAACCATGCACTGGGTTGAGTAACAGTCAAGACAGCAGAAATGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR GCA 72 bp AAGCAACACTACCGGCAAGCTTCAAACACAGAGCACTaGATAGAGGATAAACAGGACAATTTACGAAGATTT +
Preference number: 3 (lower is better)
Translates to: KQHYRQASNTEH*IEDKQDNLRRF
Trigger: AAATCTTCGTAAATTGTCCTGTTTATCCTCTATGCAGTGCTCTGTGTTTGAAGCTTGCCGGTAGTGTTGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp CAGAGCTGCCCATCCTCAGAGGTGGGACTTCCTCCCAGCACCAGCCTCTATACCCACCACCACCACCAATaGCACCTCCTGGGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: QSCPSSEVGLPPSTSLYTHHHHQ*HLLGWS
Trigger: GCTCCAGCCCAGGAGGTGGCATTGGTGGTGGTGGTG...GGTATAGAGGCTGGTGCTGGGAGGAAGTCCCACCTCTGAGGATGGGCAGCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp GCCCTGCACTCTGTGTCTGCAAGTGAGCAAAGCCAGGAAAGCTGCTCTCTGCACCTTCCACACCACCAGTaGGTCGTCCTCGGTGCGGCG +
Preference number: 4 (lower is better)
Translates to: ALHSVSASEQSQESCSLHLPHHQ*VVLGAA
Trigger: CGCCGCACCGAGGACGACTCACTGGTGGTGTGGAAG...GTGCAGAGAGCAGCTTTCCTGGCTTTGCTCACTTGCAGACACAGAGTGCAGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp CCCACAGCTCGACATACTCCCCGAGGAGGGTGTAGACATCTTGTGTCTTGGAGGGTGAGTCGTCCTCGGTaGGGCGGTACAGCGTGGCCT +
Preference number: 4 (lower is better)
Translates to: PTARHTPRGGCRHLVSWRVSRPR*GGTAWP
Trigger: AGGCCACGCTGTACCGCCGCACCGAGGACGACTCAC...CCTCCAAGACACAAGATGTCTACACCCTCCTCGGGGAGTATGTCGAGCTGTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp GCCCTGCACTCTGTGTCTGCAAGTGAGCAAAGCCAGGAAAGCTGCTCTCTGCACCTCTCCTGCGGGTCCTaGGAAGGGGGAGATCCAGGA +
Preference number: 4 (lower is better)
Translates to: ALHSVSASEQSQESCSLHLSCGS*EGGDPG
Trigger: TCCTGGATCTCCCCCTTCTCAGGACCCGCAGGAGAG...GTGCAGAGAGCAGCTTTCCTGGCTTTGCTCACTTGCAGACACAGAGTGCAGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp CCCACAGCTCGACATACTCCCCGAGGAGGGTGTAGACATCTTGTGTCTTGGAGGTCTGCAGCGGGCCTCTaGTCAGGATCCTGGTCGAGG +
Preference number: 4 (lower is better)
Translates to: PTARHTPRGGCRHLVSWRSAAGL*SGSWSR
Trigger: CCTCGACCAGGATCCTGAGCAGAGGCCCGCTGCAGA...CCTCCAAGACACAAGATGTCTACACCCTCCTCGGGGAGTATGTCGAGCTGTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp GCCCTGCACTCTGTGTCTGCAAGTGAGCAAAGCCAGGAAAGCTGCTCTCTGCACTCCCCACAGGAGACCTaGTCCACAGGATTGCTGAGG +
Preference number: 4 (lower is better)
Translates to: ALHSVSASEQSQESCSLHSPQET*STGLLR
Trigger: CCTCAGCAATCCTGTGGAGCAGGTCTCCTGTGGGGA...GTGCAGAGAGCAGCTTTCCTGGCTTTGCTCACTTGCAGACACAGAGTGCAGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp CTGTGTGTAGTACAGAGGATATGGTACTTATCAAAGGAGCTGCTGTGGCCTCAAGGGCCAGGCTCCTGCTaGACGCTGGGGCTCCGGAGG +
Preference number: 4 (lower is better)
Translates to: LCVVQRIWYLSKELLWPQGPGSC*TLGLRR
Trigger: CCTCCGGAGCCCCAGCGTGCAGCAGGAGCCTGGCCC...TTGAGGCCACAGCAGCTCCTTTGATAAGTACCATATCCTCTGTACTACACACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp TCTCTTCTAGGACATACACTGTCCTTGGAGAAGGTGGCTGCTCCTCTCAACAAGTGCGGCGGTACAGCGTaGCCTCCCCAAAGGCACCGC +
Preference number: 4 (lower is better)
Translates to: SLLGHTLSLEKVAAPLNKCGGTA*PPQRHR
Trigger: GCGGTGCCTTTGGGGAGGCCACGCTGTACCGCCGCA...CTTGTTGAGAGGAGCAGCCACCTTCTCCAAGGACAGTGTATGTCCTAGAAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp GCCCTGCACTCTGTGTCTGCAAGTGAGCAAAGCCAGGAAAGCTGCTCTCTGCACTGCCACCTCCTGGGCTaGAGCTCTGAACCACAGTTC +
Preference number: 4 (lower is better)
Translates to: ALHSVSASEQSQESCSLHCHLLG*SSEPQF
Trigger: GAACTGTGGTTCAGAGCTCCAGCCCAGGAGGTGGCA...GTGCAGAGAGCAGCTTTCCTGGCTTTGCTCACTTGCAGACACAGAGTGCAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp GCCCTGCACTCTGTGTCTGCAAGTGAGCAAAGCCAGGAAAGCTGCTCTCTGCACCTGTCTGGGTTCCTCTaGAGTGCATCCCCACCTGCT +
Preference number: 4 (lower is better)
Translates to: ALHSVSASEQSQESCSLHLSGFL*SASPPA
Trigger: AGCAGGTGGGGATGCACTCCAGAGGAACCCAGACAG...GTGCAGAGAGCAGCTTTCCTGGCTTTGCTCACTTGCAGACACAGAGTGCAGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp GCAGTATCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTGGCCCAGAACGCGGATaGGGATGTAGTGCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: AVSLRSSQIARQGTVGRVGPERG*GCSAAP
Trigger: AGGAGCTGCACTACATCCCCATCCGCGTTCTGGGCC...AACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGATACTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp AAGGGCAGTATCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGAGACCCTAATCACTTaGTTCCCGCCAAGGGGTCCC +
Preference number: 4 (lower is better)
Translates to: KGSITEVLPDSKARHCRKETLIT*FPPRGP
Trigger: GGGACCCCTTGGCGGGAAGCAAGTGATTAGGGTCTC...CTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGATACTGCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp AAGGGCAGTATCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGTGACCACAGCAAAGTaGGTGTTCCCCGCACACACC +
Preference number: 4 (lower is better)
Translates to: KGSITEVLPDSKARHCRKVTTAK*VFPAHT
Trigger: GGTGTGTGCGGGGAACACCCACTTTGCTGTGGTCAC...CTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGATACTGCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp GCAGTATCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTACCAATGCCACCTCCTaGGCTGGAGCTCTGAACCAC +
Preference number: 4 (lower is better)
Translates to: AVSLRSSQIARQGTVGRVTNATS*AGALNH
Trigger: GTGGTTCAGAGCTCCAGCCCAGGAGGTGGCATTGGT...AACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGATACTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp CCCACAGCTCGACATACTCCCCGAGGAGGGTGTAGACATCTTGTGTCTTGGAGGGTAGCAGTGCCAGGATaGCAATCTCATTCAGGGCAT +
Preference number: 4 (lower is better)
Translates to: PTARHTPRGGCRHLVSWRVAVPG*QSHSGH
Trigger: ATGCCCTGAATGAGATTGTCATCCTGGCACTGCTAC...CCTCCAAGACACAAGATGTCTACACCCTCCTCGGGGAGTATGTCGAGCTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp TCTCTTCTAGGACATACACTGTCCTTGGAGAAGGTGGCTGCTCCTCTCAACAAGCCTGGGCTGGAGCTCTaGACCACAGTTCCGATGGAC +
Preference number: 4 (lower is better)
Translates to: SLLGHTLSLEKVAAPLNKPGLEL*TTVPMD
Trigger: GTCCATCGGAACTGTGGTTCAGAGCTCCAGCCCAGG...CTTGTTGAGAGGAGCAGCCACCTTCTCCAAGGACAGTGTATGTCCTAGAAGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp CAGCTCCAGAGCAGAAGCAATGCTCGTACTGAACACCTTAAACCCTGCCTCTCACTCTGTGGGAGTCATTaGCAGGCGGCCATTACCACC +
Preference number: 4 (lower is better)
Translates to: QLQSRSNARTEHLKPCLSLCGSH*QAAITT
Trigger: GGTGGTAATGGCCGCCTGGCAATGACTCCCACAGAG...TGAGAGGCAGGGTTTAAGGTGTTCAGTACGAGCATTGCTTCTGCTCTGGAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp AGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTACCTCCCCCTTGGGTTGTAGTAGGCAATaGTGTTGTCGTGCTGTAGCA +
Preference number: 4 (lower is better)
Translates to: RSSQIARQGTVGRVTSPLGCSRQ*CCRAVA
Trigger: TGCTACAGCACGACAACATCATTGCCTACTACAACC...CAAGGGGGAGGTAACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp GCAGTATCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTCTTTGCCTGACTGAGTaGGCAGAAAGGTCCCATCAC +
Preference number: 4 (lower is better)
Translates to: AVSLRSSQIARQGTVGRVLCLTE*AERSHH
Trigger: GTGATGGGACCTTTCTGCTCACTCAGTCAGGCAAAG...AACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGATACTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp AAGGGCAGTATCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGCTTCAGATGCGACCTTaGGTCCCTGCAGCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: KGSITEVLPDSKARHCRKLQMRP*VPAALH
Trigger: ATGAAGAGCTGCAGGGACTCAAGGTCGCATCTGAAG...CTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGATACTGCCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp AGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTACCTCCCCCTTGTGTGTGAGTCTTGCCTaGGGCAATGGTACGGATTTT +
Preference number: 4 (lower is better)
Translates to: RSSQIARQGTVGRVTSPLCVSLA*GNGTDF
Trigger: AAAATCCGTACCATTGCCCCAGGCAAGACTCACACA...CAAGGGGGAGGTAACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp TCTCTTCTAGGACATACACTGTCCTTGGAGAAGGTGGCTGCTCCTCTCAACAAGGTTCCTTCTCCACGGTaGCCACAGCAAAGTGGGTGT +
Preference number: 4 (lower is better)
Translates to: SLLGHTLSLEKVAAPLNKVPSPR*PQQSGC
Trigger: ACACCCACTTTGCTGTGGTCACCGTGGAGAAGGAAC...CTTGTTGAGAGGAGCAGCCACCTTCTCCAAGGACAGTGTATGTCCTAGAAGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp CTTCCCAGCTTCAGGCTAACAATAAGCTGGCTCTTCAGCCAAGTGTTGGCACAGTCAATAGCAGCTGTGTaGGTCTTGCCTGGGGCAATG +
Preference number: 4 (lower is better)
Translates to: LPSFRLTISWLFSQVLAQSIAAV*VLPGAM
Trigger: CATTGCCCCAGGCAAGACTCACACAGCTGCTATTGA...CTGTGCCAACACTTGGCTGAAGAGCCAGCTTATTGTTAGCCTGAAGCTGGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp TCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTACCTCCGTTTCAGATTCCTGTTaGCTGTCTTCCTCTTCACCC +
Preference number: 4 (lower is better)
Translates to: SLRSSQIARQGTVGRVTSVSDSC*LSSSSP
Trigger: GGGTGAAGAGGAAGACAGTCAACAGGAATCTGAAAC...GGAGGTAACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp GCAGTATCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTTGTCAGGCATGGGAATaGACTCTGCGTTTTCCAGCT +
Preference number: 4 (lower is better)
Translates to: AVSLRSSQIARQGTVGRVCQAWE*TLRFPA
Trigger: AGCTGGAAAACGCAGAGTTCATTCCCATGCCTGACA...AACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGATACTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp TCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTACCTCCACATGTAATATGGAGTaGCCACAAGTGTCTCGGCCA +
Preference number: 4 (lower is better)
Translates to: SLRSSQIARQGTVGRVTSTCNME*PQVSRP
Trigger: TGGCCGAGACACTTGTGGGCACTCCATATTACATGT...GGAGGTAACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp CAGCTCCAGAGCAGAAGCAATGCTCGTACTGAACACCTTAAACCCTGCCTCTCAATCCTGGTCGAGGCATaGGTGTACCAACTGGATCAG +
Preference number: 4 (lower is better)
Translates to: QLQSRSNARTEHLKPCLSILVEA*VYQLDQ
Trigger: CTGATCCAGTTGGTACACGCATGCCTCGACCAGGAT...TGAGAGGCAGGGTTTAAGGTGTTCAGTACGAGCATTGCTTCTGCTCTGGAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp CTTCCTCCCAGCACCAGCCTCTATACCACTAGCTTAAGGAAATGGCAAAATTTCATCCAGGAGTGCATCTaGAGCGGGCCTCTGCTCAGG +
Preference number: 4 (lower is better)
Translates to: LPPSTSLYTTSLRKWQNFIQECI*SGPLLR
Trigger: CCTGAGCAGAGGCCCGCTGCAGATGCACTCCTGGAT...GAAATTTTGCCATTTCCTTAAGCTAGTGGTATAGAGGCTGGTGCTGGGAGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp AGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTACCTCCCCCTTGCCTTGTCCACTCCCATaGAGCCATAATAATCTGATC +
Preference number: 4 (lower is better)
Translates to: RSSQIARQGTVGRVTSPLPCPLP*SHNNLI
Trigger: GATCAGATTATTATGGCTGCATGGGAGTGGACAAGG...CAAGGGGGAGGTAACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp AGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTACCTCCCCCTTGATCTGGAGGTTTTCTTaGTGGAGCTTCTGCTGTTCT +
Preference number: 4 (lower is better)
Translates to: RSSQIARQGTVGRVTSPLIWRFS*WSFCCS
Trigger: AGAACAGCAGAAGCTCCAGCAAGAAAACCTCCAGAT...CAAGGGGGAGGTAACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp TCTCTTCTAGGACATACACTGTCCTTGGAGAAGGTGGCTGCTCCTCTCAACAAGGAGTGCATCCCCACCTaGTGGCCTCCTTCCAATTTC +
Preference number: 4 (lower is better)
Translates to: SLLGHTLSLEKVAAPLNKECIPT*WPPSNF
Trigger: GAAATTGGAAGGAGGCCAGCAGGTGGGGATGCACTC...CTTGTTGAGAGGAGCAGCCACCTTCTCCAAGGACAGTGTATGTCCTAGAAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp CAGAGCTGCCCATCCTCAGAGGTGGGACTTCCTCCCAGCACCAGCCTCTATACCTGGAACGGATGGTCTTaGAATTCAACACTTTCTCAA +
Preference number: 4 (lower is better)
Translates to: QSCPSSEVGLPPSTSLYTWNGWS*NSTLSQ
Trigger: TTGAGAAAGTGTTGAATTCCAAGACCATCCGTTCCA...GGTATAGAGGCTGGTGCTGGGAGGAAGTCCCACCTCTGAGGATGGGCAGCTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp CTTCCCAGCTTCAGGCTAACAATAAGCTGGCTCTTCAGCCAAGTGTTGGCACAGGAACCACAGTTCCGATaGACAGGCCACTGCTATTGG +
Preference number: 4 (lower is better)
Translates to: LPSFRLTISWLFSQVLAQEPQFR*TGHCYW
Trigger: CCAATAGCAGTGGCCTGTCCATCGGAACTGTGGTTC...CTGTGCCAACACTTGGCTGAAGAGCCAGCTTATTGTTAGCCTGAAGCTGGGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp AAGGGCAGTATCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGCCTCCGCTTGGATCTaGAGTTTCAGATTCCTGTTG +
Preference number: 4 (lower is better)
Translates to: KGSITEVLPDSKARHCRKASAWI*SFRFLL
Trigger: CAACAGGAATCTGAAACTCCAGATCCAAGCGGAGGC...CTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGATACTGCCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp GCCCTGCACTCTGTGTCTGCAAGTGAGCAAAGCCAGGAAAGCTGCTCTCTGCACAGGATTCCAGCTTTATaGATACAGCTCACTGCTGAA +
Preference number: 4 (lower is better)
Translates to: ALHSVSASEQSQESCSLHRIPAL*IQLTAE
Trigger: TTCAGCAGTGAGCTGTATTCATAAAGCTGGAATCCT...GTGCAGAGAGCAGCTTTCCTGGCTTTGCTCACTTGCAGACACAGAGTGCAGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp CAGCTCCAGAGCAGAAGCAATGCTCGTACTGAACACCTTAAACCCTGCCTCTCATTCCATCCCACGGTCTaGTTCCATTGTTCCTCGGAA +
Preference number: 4 (lower is better)
Translates to: QLQSRSNARTEHLKPCLSFHPTV*FHCSSE
Trigger: TTCCGAGGAACAATGGAAGCAGACCGTGGGATGGAA...TGAGAGGCAGGGTTTAAGGTGTTCAGTACGAGCATTGCTTCTGCTCTGGAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp GGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACACTACCGGCAATCGAGTCAACTTCCATaGCCCGGATTCCCTGCACGA +
Preference number: 4 (lower is better)
Translates to: GTEDKRRLYCNSKQHYRQSSQLP*PGFPAR
Trigger: TCGTGCAGGGAATCCGGGCCATGGAAGTTGACTCGA...TTGCCGGTAGTGTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp CTAGGACATACACTGTCCTTGGAGAAGGTGGCTGCTCCTCTCAACAAGAACACATGCATCCCCACCTGCTaGCCTCCTTCCAATTTCTTG +
Preference number: 4 (lower is better)
Translates to: LGHTLSLEKVAAPLNKNTCIPTC*PPSNFL
Trigger: CAAGAAATTGGAAGGAGGCCAGCAGGTGGGGATGCA...TGTGTTCTTGTTGAGAGGAGCAGCCACCTTCTCCAAGGACAGTGTATGTCCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp GGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACACTACCGGCAATTCCGAAGTCCGAGTTaGTGGAATCGCAGTGTCGCT +
Preference number: 4 (lower is better)
Translates to: GTEDKRRLYCNSKQHYRQFRSPS*WNRSVA
Trigger: AGCGACACTGCGATTCCATCAACTCGGACTTCGGAA...TTGCCGGTAGTGTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp TTTCCACTCTCTGGAGGACCCTGGGCAGCCCACTCCATTTTTATATTTTCCTTCATGGCCCGGATTCCCTaGACGATCTTCACACATAGG +
Preference number: 4 (lower is better)
Translates to: FPLSGGPWAAHSIFIFSFMARIP*TIFTHR
Trigger: CCTATGTGTGAAGATCGTGCAGGGAATCCGGGCCAT...GAAGGAAAATATAAAAATGGAGTGGGCTGCCCAGGGTCCTCCAGAGAGTGGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp CCTATTCTAGGAATAAGCCTCAGTGCTGAAAGCAGTACCACTGTACTGTGCTTCCGGAGGAACTTCAGATaGGACCTTGAGTCCCTGCAG +
Preference number: 4 (lower is better)
Translates to: PILGISLSAESSTTVLCFRRNFR*DLESLQ
Trigger: CTGCAGGGACTCAAGGTCGCATCTGAAGTTCCTCCG...GAAGCACAGTACAGTGGTACTGCTTTCAGCACTGAGGCTTATTCCTAGAATAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp AGCCAAGTGTTGGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACCTGTCAACCTCCACCTaGAGAGCACTGCACGCACAA +
Preference number: 4 (lower is better)
Translates to: SQVLAQRINAGYTVTQSNLSTST*RALHAQ
Trigger: TTGTGCGTGCAGTGCTCTGCAGGTGGAGGTTGACAG...GTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCCAACACTTGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp TCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTACCTCCCATGCGTGTACCAACTaGATCAGTTCCAAAGAATAC +
Preference number: 4 (lower is better)
Translates to: SLRSSQIARQGTVGRVTSHACTN*ISSKEY
Trigger: GTATTCTTTGGAACTGATCCAGTTGGTACACGCATG...GGAGGTAACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp TCTCTTCTAGGACATACACTGTCCTTGGAGAAGGTGGCTGCTCCTCTCAACAAGACGGCAAGAAAGGTCTaGAACATGATGCAGGGATCC +
Preference number: 4 (lower is better)
Translates to: SLLGHTLSLEKVAAPLNKTARKV*NMMQGS
Trigger: GGATCCCTGCATCATGTTCCAGACCTTTCTTGCCGT...CTTGTTGAGAGGAGCAGCCACCTTCTCCAAGGACAGTGTATGTCCTAGAAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp GCAGTATCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTAGTTGGGTAAACATCTaGAGGTTTTCTTGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: AVSLRSSQIARQGTVGRVSWVNI*RFSCWS
Trigger: GCTCCAGCAAGAAAACCTCCAGATGTTTACCCAACT...AACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGATACTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp CCTATTCTAGGAATAAGCCTCAGTGCTGAAAGCAGTACCACTGTACTGTGCTTCGCTCCACAGGATTGCTaGGGAAGAAGTTCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: PILGISLSAESSTTVLCFAPQDC*GRSSAA
Trigger: TGCAGCTGAACTTCTTCCTCAGCAATCCTGTGGAGC...GAAGCACAGTACAGTGGTACTGCTTTCAGCACTGAGGCTTATTCCTAGAATAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp GGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACACTACCGGCAAGTGCTTCCGTCACAGTaGTTGACCTTGGTCTCTTTG +
Preference number: 4 (lower is better)
Translates to: GTEDKRRLYCNSKQHYRQVLPSQ*LTLVSL
Trigger: CAAAGAGACCAAGGTCAAGCACTGTGACGGAAGCAC...TTGCCGGTAGTGTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp GGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACACTACCGGCAACATGGGAATGAACTCTaGGTTTTCCAGCTCCTTCCG +
Preference number: 4 (lower is better)
Translates to: GTEDKRRLYCNSKQHYRQHGNEL*VFQLLP
Trigger: CGGAAGGAGCTGGAAAACGCAGAGTTCATTCCCATG...TTGCCGGTAGTGTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp CAGCTCCAGAGCAGAAGCAATGCTCGTACTGAACACCTTAAACCCTGCCTCTCACCAATTTCTGAGGTGTaGATTTTCCACCACCCCAAA +
Preference number: 4 (lower is better)
Translates to: QLQSRSNARTEHLKPCLSPISEV*IFHHPK
Trigger: TTTGGGGTGGTGGAAAATCCACACCTCAGAAATTGG...TGAGAGGCAGGGTTTAAGGTGTTCAGTACGAGCATTGCTTCTGCTCTGGAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp GGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACACTACCGGCAAAGAAGTTCAGCTGCATaGGTTCTAGCACTTCAGGGC +
Preference number: 4 (lower is better)
Translates to: GTEDKRRLYCNSKQHYRQRSSAA*VLALQG
Trigger: GCCCTGAAGTGCTAGAACCCATGCAGCTGAACTTCT...TTGCCGGTAGTGTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp GGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACACTACCGGCAATCTTCCTTTGCTGTCTaGGTTCCTCTGGAGTGCATC +
Preference number: 4 (lower is better)
Translates to: GTEDKRRLYCNSKQHYRQSSFAV*VPLECI
Trigger: GATGCACTCCAGAGGAACCCAGACAGCAAAGGAAGA...TTGCCGGTAGTGTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp TCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTACCTCCAATACAGCTCACTGCTaGAACAATCTGAAAAAGGTA +
Preference number: 4 (lower is better)
Translates to: SLRSSQIARQGTVGRVTSNTAHC*NNLKKV
Trigger: TACCTTTTTCAGATTGTTTCAGCAGTGAGCTGTATT...GGAGGTAACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp CTTCCTCCCAGCACCAGCCTCTATACCACTAGCTTAAGGAAATGGCAAAATTTCGACTTCACTGGTTCGTaGTGTTACCACAGCAATGGG +
Preference number: 4 (lower is better)
Translates to: LPPSTSLYTTSLRKWQNFDFTGS*CYHSNG
Trigger: CCCATTGCTGTGGTAACATCACGAACCAGTGAAGTC...GAAATTTTGCCATTTCCTTAAGCTAGTGGTATAGAGGCTGGTGCTGGGAGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp CTTCCTCCCAGCACCAGCCTCTATACCACTAGCTTAAGGAAATGGCAAAATTTCGTCAGAACTACCACATaGTTATCCCCACAGGAGACC +
Preference number: 4 (lower is better)
Translates to: LPPSTSLYTTSLRKWQNFVRTTT*LSPQET
Trigger: GGTCTCCTGTGGGGATAATCATGTGGTAGTTCTGAC...GAAATTTTGCCATTTCCTTAAGCTAGTGGTATAGAGGCTGGTGCTGGGAGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp AACACAAGCAATCCATTAGACTTGGTGGAAGTGCAAGGCTCACATTTAAGGGAAGGCCAGCACTTTGCCTaGCTGAGTGAGCAGAAAGGT +
Preference number: 4 (lower is better)
Translates to: NTSNPLDLVEVQGSHLREGQHFA*LSEQKG
Trigger: ACCTTTCTGCTCACTCAGTCAGGCAAAGTGCTGGCC...TTCCCTTAAATGTGAGCCTTGCACTTCCACCAAGTCTAATGGATTGCTTGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp CTTCCCAGCTTCAGGCTAACAATAAGCTGGCTCTTCAGCCAAGTGTTGGCACAGGAAAGGTCTGGAACATaGTGCAGGGATCCAAAAATA +
Preference number: 4 (lower is better)
Translates to: LPSFRLTISWLFSQVLAQERSGT*CRDPKI
Trigger: TATTTTTGGATCCCTGCATCATGTTCCAGACCTTTC...CTGTGCCAACACTTGGCTGAAGAGCCAGCTTATTGTTAGCCTGAAGCTGGGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp GCAGTATCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTAATGACACAGCCAACTaGCCATATATCAGACTTGAA +
Preference number: 4 (lower is better)
Translates to: AVSLRSSQIARQGTVGRVNDTAN*PYIRLE
Trigger: TTCAAGTCTGATATATGGGCAGTTGGCTGTGTCATT...AACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGATACTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp CAGCTCCAGAGCAGAAGCAATGCTCGTACTGAACACCTTAAACCCTGCCTCTCAGGGAACTTCATGGTATaGTTCATGGTTGATGATTCC +
Preference number: 4 (lower is better)
Translates to: QLQSRSNARTEHLKPCLSGNFMV*FMVDDS
Trigger: GGAATCATCAACCATGAAGCATACCATGAAGTTCCC...TGAGAGGCAGGGTTTAAGGTGTTCAGTACGAGCATTGCTTCTGCTCTGGAGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp TCTCTTCTAGGACATACACTGTCCTTGGAGAAGGTGGCTGCTCCTCTCAACAAGTTCCATTTCTTCCTTTaGTGTCTGGGTTCCTCTGGA +
Preference number: 4 (lower is better)
Translates to: SLLGHTLSLEKVAAPLNKFHFFL*CLGSSG
Trigger: TCCAGAGGAACCCAGACAGCAAAGGAAGAAATGGAA...CTTGTTGAGAGGAGCAGCCACCTTCTCCAAGGACAGTGTATGTCCTAGAAGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp AGCCAAGTGTTGGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACTCGGAAGCCTCCGCTTaGATCTGGAGTTTCAGATTC +
Preference number: 4 (lower is better)
Translates to: SQVLAQRINAGYTVTQSNSEASA*IWSFRF
Trigger: GAATCTGAAACTCCAGATCCAAGCGGAGGCTTCCGA...GTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCCAACACTTGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp AGCCAAGTGTTGGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACGCAGCCATAATAATCTaGTCCAAAGGCGTAGAGCTG +
Preference number: 4 (lower is better)
Translates to: SQVLAQRINAGYTVTQSNAAIII*SKGVEL
Trigger: CAGCTCTACGCCTTTGGATCAGATTATTATGGCTGC...GTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCCAACACTTGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp GGATTTGGTGCTGGCTTTGGGCTTCTCAAGTACAAAGATGATACTGATTTACTGAGCACTTTGCCTGACTaGGTGAGCAGAAAGGTCCCA +
Preference number: 4 (lower is better)
Translates to: GFGAGFGLLKYKDDTDLLSTLPD*VSRKVP
Trigger: TGGGACCTTTCTGCTCACTCAGTCAGGCAAAGTGCT...CAGTAAATCAGTATCATCTTTGTACTTGAGAAGCCCAAAGCCAGCACCAAATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp TTATATTTTCCTTCATCCATCCAGATGTGCAATGCCTGGTGCTTAAATCCCAAACGGTGGCAGCAATGGTaGACTCATCGCCACACGAGA +
Preference number: 4 (lower is better)
Translates to: LYFPSSIQMCNAWCLNPKRWQQW*THRHTR
Trigger: TCTCGTGTGGCGATGAGTTCACCATTGCTGCCACCG...TTTGGGATTTAAGCACCAGGCATTGCACATCTGGATGGATGAAGGAAAATATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp AACACAAGCAATCCATTAGACTTGGTGGAAGTGCAAGGCTCACATTTAAGGGAAAATAGGCCGAGGCCATaGGGTACAGATATCAGAGCC +
Preference number: 4 (lower is better)
Translates to: NTSNPLDLVEVQGSHLRENRPRP*GTDIRA
Trigger: GGCTCTGATATCTGTACCTCATGGCCTCGGCCTATT...TTCCCTTAAATGTGAGCCTTGCACTTCCACCAAGTCTAATGGATTGCTTGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp CCTATTCTAGGAATAAGCCTCAGTGCTGAAAGCAGTACCACTGTACTGTGCTTCACAATAAGAATGGTGTaGCAGCCACGGCAAGAAAGG +
Preference number: 4 (lower is better)
Translates to: PILGISLSAESSTTVLCFTIRMV*QPRQER
Trigger: CCTTTCTTGCCGTGGCTGGCACACCATTCTTATTGT...GAAGCACAGTACAGTGGTACTGCTTTCAGCACTGAGGCTTATTCCTAGAATAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp AACACAAGCAATCCATTAGACTTGGTGGAAGTGCAAGGCTCACATTTAAGGGAACGATGGACAGGCCACTaGTATTGGAACGGATGGTCT +
Preference number: 4 (lower is better)
Translates to: NTSNPLDLVEVQGSHLRERWTGH*YWNGWS
Trigger: AGACCATCCGTTCCAATAGCAGTGGCCTGTCCATCG...TTCCCTTAAATGTGAGCCTTGCACTTCCACCAAGTCTAATGGATTGCTTGTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp TCTCTTCTAGGACATACACTGTCCTTGGAGAAGGTGGCTGCTCCTCTCAACAAGAACATCCACCCTCTGTaGTGTATAGTAATCCTCTTC +
Preference number: 4 (lower is better)
Translates to: SLLGHTLSLEKVAAPLNKNIHPL*CIVILF
Trigger: GAAGAGGATTACTATACACCACAGAGGGTGGATGTT...CTTGTTGAGAGGAGCAGCCACCTTCTCCAAGGACAGTGTATGTCCTAGAAGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp AGCCAAGTGTTGGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACTGGAGGTTTTCTTGCTaGAGCTTCTGCTGTTCTTCC +
Preference number: 4 (lower is better)
Translates to: SQVLAQRINAGYTVTQSNWRFSC*SFCCSS
Trigger: GGAAGAACAGCAGAAGCTCCAGCAAGAAAACCTCCA...GTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCCAACACTTGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR CAA 72 bp AAAGGCCAGCCAGTCCTGACGAAAACCAAAGCTGCATaGACCAAACTGAACCAAAACTCTCTGCAGGGTTTA +
Preference number: 4 (lower is better)
Translates to: KGQPVLTKTKAA*TKLNQNSLQGL
Trigger: TAAACCCTGCAGAGAGTTTTGGTTCAGTTTGGTCAATGCAGCTTTGGTTTTCGTCAGGACTGGCTGGCCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp TTTCCACTCTCTGGAGGACCCTGGGCAGCCCACTCCATTTTTATATTTTCCTTCAGTTCCAAAGAATACTaGCTCGAGTCAACTTCCATG +
Preference number: 4 (lower is better)
Translates to: FPLSGGPWAAHSIFIFSFSSKEY*LESTSM
Trigger: CATGGAAGTTGACTCGAGTCAGTATTCTTTGGAACT...GAAGGAAAATATAAAAATGGAGTGGGCTGCCCAGGGTCCTCCAGAGAGTGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp CCTATTCTAGGAATAAGCCTCAGTGCTGAAAGCAGTACCACTGTACTGTGCTTCATGACGTCCAATTTCTaGGGTGTGGATTTTCCACCA +
Preference number: 4 (lower is better)
Translates to: PILGISLSAESSTTVLCFMTSNF*GVDFPP
Trigger: TGGTGGAAAATCCACACCTCAGAAATTGGACGTCAT...GAAGCACAGTACAGTGGTACTGCTTTCAGCACTGAGGCTTATTCCTAGAATAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp CCTATTCTAGGAATAAGCCTCAGTGCTGAAAGCAGTACCACTGTACTGTGCTTCTCCTTGGCAGAGCTCTaGAGACATGTAATATGGAGT +
Preference number: 4 (lower is better)
Translates to: PILGISLSAESSTTVLCFSLAEL*RHVIWS
Trigger: ACTCCATATTACATGTCTCCAGAGCTCTGCCAAGGA...GAAGCACAGTACAGTGGTACTGCTTTCAGCACTGAGGCTTATTCCTAGAATAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
3UTR CAA 72 bp AGGTTCTATCTGTCAAGCTTTTGTGACCCCAAGGATTaGGTGCTGGCTTTGGGCTTCTCAAGTACAAAGATG +
Preference number: 4 (lower is better)
Translates to: RFYLSSFCDPKD*VLALGFSSTKM
Trigger: CATCTTTGTACTTGAGAAGCCCAAAGCCAGCACCAAATCCTTGGGGTCACAAAAGCTTGACAGATAGAACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp TTATATTTTCCTTCATCCATCCAGATGTGCAATGCCTGGTGCTTAAATCCCAAAGGGTGGTGTTGTCCATaGAGTGGTTGTAGTAGGCAA +
Preference number: 4 (lower is better)
Translates to: LYFPSSIQMCNAWCLNPKGWCCP*SGCSRQ
Trigger: TTGCCTACTACAACCACTTCATGGACAACACCACCC...TTTGGGATTTAAGCACCAGGCATTGCACATCTGGATGGATGAAGGAAAATATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp TTTCCACTCTCTGGAGGACCCTGGGCAGCCCACTCCATTTTTATATTTTCCTTCATTGAACTGCAACAATaGTTAAGGCCTTTGGAACAT +
Preference number: 4 (lower is better)
Translates to: FPLSGGPWAAHSIFIFSFIELQQ*LRPLEH
Trigger: ATGTTCCAAAGGCCTTAATCATTGTTGCAGTTCAAT...GAAGGAAAATATAAAAATGGAGTGGGCTGCCCAGGGTCCTCCAGAGAGTGGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp TTATATTTTCCTTCATCCATCCAGATGTGCAATGCCTGGTGCTTAAATCCCAAAGCAATGATGTTGTCGTaGTGTAGCAGTGCCAGGATG +
Preference number: 4 (lower is better)
Translates to: LYFPSSIQMCNAWCLNPKAMMLS*CSSARM
Trigger: CATCCTGGCACTGCTACAGCACGACAACATCATTGC...TTTGGGATTTAAGCACCAGGCATTGCACATCTGGATGGATGAAGGAAAATATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp TTATATTTTCCTTCATCCATCCAGATGTGCAATGCCTGGTGCTTAAATCCCAAATTTAACACCAGAGCCTaGAACCTGTCAACCTCCACC +
Preference number: 4 (lower is better)
Translates to: LYFPSSIQMCNAWCLNPKFNTRA*NLSTST
Trigger: GGTGGAGGTTGACAGGTTGCAGGCTCTGGTGTTAAA...TTTGGGATTTAAGCACCAGGCATTGCACATCTGGATGGATGAAGGAAAATATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp TTTCCACTCTCTGGAGGACCCTGGGCAGCCCACTCCATTTTTATATTTTCCTTCTTGAGCTTTTGTAGTTaGGTAAACATCTGGAGGTTT +
Preference number: 4 (lower is better)
Translates to: FPLSGGPWAAHSIFIFSFLSFCS*VNIWRF
Trigger: AAACCTCCAGATGTTTACCCAACTACAAAAGCTCAA...GAAGGAAAATATAAAAATGGAGTGGGCTGCCCAGGGTCCTCCAGAGAGTGGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR TCA 90 bp GGATTTGGTGCTGGCTTTGGGCTTCTCAAGTACAAAGATGATACTGATTTACTGCCATCACAGCCACATTaGACTGCAACAATGATTAAG +
Preference number: 4 (lower is better)
Translates to: GFGAGFGLLKYKDDTDLLPSQPH*TATMIK
Trigger: CTTAATCATTGTTGCAGTTCAATGTGGCTGTGATGG...CAGTAAATCAGTATCATCTTTGTACTTGAGAAGCCCAAAGCCAGCACCAAATCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR GCA 90 bp GGATTTGGTGCTGGCTTTGGGCTTCTCAAGTACAAAGATGATACTGATTTACTGTGGTCTCTTTGTAGGTaGATTGAGCAGAGTGACTTT +
Preference number: 4 (lower is better)
Translates to: GFGAGFGLLKYKDDTDLLWSLCR*IEQSDF
Trigger: AAAGTCACTCTGCTCAATGCACCTACAAAGAGACCA...CAGTAAATCAGTATCATCTTTGTACTTGAGAAGCCCAAAGCCAGCACCAAATCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp TTATATTTTCCTTCATCCATCCAGATGTGCAATGCCTGGTGCTTAAATCCCAAAGATATCAGAGCCATGTaGTCTCTCTGTGGGAGTCAT +
Preference number: 4 (lower is better)
Translates to: LYFPSSIQMCNAWCLNPKDIRAM*SLCGSH
Trigger: ATGACTCCCACAGAGAGACCACATGGCTCTGATATC...TTTGGGATTTAAGCACCAGGCATTGCACATCTGGATGGATGAAGGAAAATATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp AACACAAGCAATCCATTAGACTTGGTGGAAGTGCAAGGCTCACATTTAAGGGAATGCTATTGGAACGGATaGTCTTGGAATTCAACACTT +
Preference number: 4 (lower is better)
Translates to: NTSNPLDLVEVQGSHLRECYWNG*SWNSTL
Trigger: AAGTGTTGAATTCCAAGACCATCCGTTCCAATAGCA...TTCCCTTAAATGTGAGCCTTGCACTTCCACCAAGTCTAATGGATTGCTTGTGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CCA 90 bp TTTATATTTTCCTTCATCCATCCAGATGTGCAATGCCTGGTGCTTAAATCCCAAAAACATAGACTTCACTaGTTCGTGATGTTACCACAG +
Preference number: 4 (lower is better)
Translates to: FIFSFIHPDVQCLVLKSQKHRLH*FVMLPQ
Trigger: CTGTGGTAACATCACGAACCAGTGAAGTCTATGTTT...TTGGGATTTAAGCACCAGGCATTGCACATCTGGATGGATGAAGGAAAATATAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 90 bp GGTACAGCGTGGCCTCCCCAAAGGCACCGCGGCCCAGAACGCGGATaGGGATGTAGTGCAGCTCCTCCTGCTCCGCCGCCCCGCCGCCGG +
Preference number: 5 (lower is better)
Translates to: GTAWPPQRHRGPERG*GCSAAPPAPPPRRR
Trigger: CCGGCGGCGGGGCGGCGGAGCAGGAGGAGCTGCACTACATCCCCATCCGCGTTCTGGGCCGCGGTGCCTTTGGGGAGGCCACGCTGTACC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS GCA 90 bp AACACACGGCACTGCAGGATCCAGCCGAGGGGGCCAGGCTCCTGCTaGACGCTGGGGCTCCGGAGGAACTTCAGATGCGACCTTGAGTCC +
Preference number: 5 (lower is better)
Translates to: NTRHCRIQPRGPGSC*TLGLRRNFRCDLES
Trigger: GGACTCAAGGTCGCATCTGAAGTTCCTCCGGAGCCCCAGCGTGCAGCAGGAGCCTGGCCCCCTCGGCTGGATCCTGCAGTGCCGTGTGTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS GCA 90 bp CTCCATCTCTCTCCTGCGGGTCCTGAGAAGGGGGAGATCCAGGAGTaGATCTGCAGCGGGCCTCTGCTCAGGATCCTGGTCGAGGCATGC +
Preference number: 5 (lower is better)
Translates to: LHLSPAGPEKGEIQE*ICSGPLLRILVEAC
Trigger: GCATGCCTCGACCAGGATCCTGAGCAGAGGCCCGCTGCAGATGCACTCCTGGATCTCCCCCTTCTCAGGACCCGCAGGAGAGAGATGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS GCA 90 bp GGGCCAGGCTCCTGCTGCACGCTGGGGCTCCGGAGGAACTTCAGATaGGACCTTGAGTCCCTGCAGCTCTTCATAGGGCAGCGTGTCCTT +
Preference number: 5 (lower is better)
Translates to: GPGSCCTLGLRRNFR*DLESLQLFIGQRVL
Trigger: AAGGACACGCTGCCCTATGAAGAGCTGCAGGGACTCAAGGTCGCATCTGAAGTTCCTCCGGAGCCCCAGCGTGCAGCAGGAGCCTGGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 90 bp CTCCTGCTGCACGCTGGGGCTCCGGAGGAACTTCAGATGCGACCTTaGGTCCCTGCAGCTCTTCATAGGGCAGCGTGTCCTTCTCAGACT +
Preference number: 5 (lower is better)
Translates to: LLLHAGAPEELQMRP*VPAALHRAACPSQT
Trigger: AGTCTGAGAAGGACACGCTGCCCTATGAAGAGCTGCAGGGACTCAAGGTCGCATCTGAAGTTCCTCCGGAGCCCCAGCGTGCAGCAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS GCA 90 bp TTAACACCAGAGCCTGCAACCTGTCAACCTCCACCTGCAGAGCACTaGACGCACAAGCAGCAGAGGTCAGGGCTTTCCCAACACACGGCA +
Preference number: 5 (lower is better)
Translates to: LTPEPATCQPPPAEH*THKQQRSGLSQHTA
Trigger: TGCCGTGTGTTGGGAAAGCCCTGACCTCTGCTGCTTGTGCGTGCAGTGCTCTGCAGGTGGAGGTTGACAGGTTGCAGGCTCTGGTGTTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 90 bp TGCCCCCTTGCATGTTCACCCAGGTATATAGTTCCTTCTCCACGGTaGCCACAGCAAAGTGGGTGTTCCCCGCACACACCTGTCGAGCAC +
Preference number: 5 (lower is better)
Translates to: CPLACSPRYIVPSPR*PQQSGCSPHTPVEH
Trigger: GTGCTCGACAGGTGTGTGCGGGGAACACCCACTTTGCTGTGGTCACCGTGGAGAAGGAACTATATACCTGGGTGAACATGCAAGGGGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 90 bp GGGAGATCCAGGAGTGCATCTGCAGCGGGCCTCTGCTCAGGATCCTaGTCGAGGCATGCGTGTACCAACTGGATCAGTTCCAAAGAATAC +
Preference number: 5 (lower is better)
Translates to: GRSRSASAAGLCSGS*SRHACTNWISSKEY
Trigger: GTATTCTTTGGAACTGATCCAGTTGGTACACGCATGCCTCGACCAGGATCCTGAGCAGAGGCCCGCTGCAGATGCACTCCTGGATCTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 90 bp CCCACGGTCTGCTTCCATTGTTCCTCGGAAGCCTCCGCTTGGATCTaGAGTTTCAGATTCCTGTTGACTGTCTTCCTCTTCACCCCCGCC +
Preference number: 5 (lower is better)
Translates to: PTVCFHCSSEASAWI*SFRFLLTVFLFTPA
Trigger: GGCGGGGGTGAAGAGGAAGACAGTCAACAGGAATCTGAAACTCCAGATCCAAGCGGAGGCTTCCGAGGAACAATGGAAGCAGACCGTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp CCCACAGCTCGACATACTCCCCGAGGAGGGTGTAGACATCTTGTGTCTTGGAGGCTTCCGAAGTCCGAGTaGATGGAATCGCAGTGTCGC +
Preference number: 5 (lower is better)
Translates to: PTARHTPRGGCRHLVSWRLPKSE*MESQCR
Trigger: GCGACACTGCGATTCCATCAACTCGGACTTCGGAAG...CCTCCAAGACACAAGATGTCTACACCCTCCTCGGGGAGTATGTCGAGCTGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS GCA 90 bp GAGTGCATCTGCAGCGGGCCTCTGCTCAGGATCCTGGTCGAGGCATaGGTGTACCAACTGGATCAGTTCCAAAGAATACTGACTCGAGTC +
Preference number: 5 (lower is better)
Translates to: ECICSGPLLRILVEA*VYQLDQFQRILTRV
Trigger: GACTCGAGTCAGTATTCTTTGGAACTGATCCAGTTGGTACACGCATGCCTCGACCAGGATCCTGAGCAGAGGCCCGCTGCAGATGCACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp AAGGGCAGTATCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGTCTCTGTGGGAGTCATaGCCAGGCGGCCATTACCAC +
Preference number: 5 (lower is better)
Translates to: KGSITEVLPDSKARHCRKSLWES*PGGHYH
Trigger: GTGGTAATGGCCGCCTGGCAATGACTCCCACAGAGA...CTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGATACTGCCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp CAGAGCTGCCCATCCTCAGAGGTGGGACTTCCTCCCAGCACCAGCCTCTATACCTTTCCATTTCTTCCTTaGCTGTCTGGGTTCCTCTGG +
Preference number: 5 (lower is better)
Translates to: QSCPSSEVGLPPSTSLYTFPFLP*LSGFLW
Trigger: CCAGAGGAACCCAGACAGCAAAGGAAGAAATGGAAA...GGTATAGAGGCTGGTGCTGGGAGGAAGTCCCACCTCTGAGGATGGGCAGCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 90 bp TTCACCCAGGTATATAGTTCCTTCTCCACGGTGACCACAGCAAAGTaGGTGTTCCCCGCACACACCTGTCGAGCACTACAGCCACTCTTG +
Preference number: 5 (lower is better)
Translates to: FTQVYSSFSTVTTAK*VFPAHTCRALQPLL
Trigger: CAAGAGTGGCTGTAGTGCTCGACAGGTGTGTGCGGGGAACACCCACTTTGCTGTGGTCACCGTGGAGAAGGAACTATATACCTGGGTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp TCTCTTCTAGGACATACACTGTCCTTGGAGAAGGTGGCTGCTCCTCTCAACAAGCACGGTCTGCTTCCATaGTTCCTCGGAAGCCTCCGC +
Preference number: 5 (lower is better)
Translates to: SLLGHTLSLEKVAAPLNKHGLLP*FLGSLR
Trigger: GCGGAGGCTTCCGAGGAACAATGGAAGCAGACCGTG...CTTGTTGAGAGGAGCAGCCACCTTCTCCAAGGACAGTGTATGTCCTAGAAGAGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp CCCACAGCTCGACATACTCCCCGAGGAGGGTGTAGACATCTTGTGTCTTGGAGGCATCTGGAGGTTTTCTaGCTGGAGCTTCTGCTGTTC +
Preference number: 5 (lower is better)
Translates to: PTARHTPRGGCRHLVSWRHLEVF*LELLLF
Trigger: GAACAGCAGAAGCTCCAGCAAGAAAACCTCCAGATG...CCTCCAAGACACAAGATGTCTACACCCTCCTCGGGGAGTATGTCGAGCTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 90 bp CCCCAGCTTGTTGAACTCATTGAGTCCACAGGCCAGCACTTTGCCTaGCTGAGTGAGCAGAAAGGTCCCATCACAGCCACATTGAACTGC +
Preference number: 5 (lower is better)
Translates to: PQLVELIESTGQHFA*LSEQKGPITATLNC
Trigger: GCAGTTCAATGTGGCTGTGATGGGACCTTTCTGCTCACTCAGTCAGGCAAAGTGCTGGCCTGTGGACTCAATGAGTTCAACAAGCTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp AAGGGCAGTATCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGACTTCAGATGCGACCTaGAGTCCCTGCAGCTCTTCA +
Preference number: 5 (lower is better)
Translates to: KGSITEVLPDSKARHCRKTSDAT*SPCSSS
Trigger: TGAAGAGCTGCAGGGACTCAAGGTCGCATCTGAAGT...CTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGATACTGCCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 90 bp TGGTCGAGGCATGCGTGTACCAACTGGATCAGTTCCAAAGAATACTaGCTCGAGTCAACTTCCATGGCCCGGATTCCCTGCACGATCTTC +
Preference number: 5 (lower is better)
Translates to: WSRHACTNWISSKEY*LESTSMARIPCTIF
Trigger: GAAGATCGTGCAGGGAATCCGGGCCATGGAAGTTGACTCGAGTCAGTATTCTTTGGAACTGATCCAGTTGGTACACGCATGCCTCGACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 90 bp TTCCATCCCACGGTCTGCTTCCATTGTTCCTCGGAAGCCTCCGCTTaGATCTGGAGTTTCAGATTCCTGTTGACTGTCTTCCTCTTCACC +
Preference number: 5 (lower is better)
Translates to: FHPTVCFHCSSEASA*IWSFRFLLTVFLFT
Trigger: GGTGAAGAGGAAGACAGTCAACAGGAATCTGAAACTCCAGATCCAAGCGGAGGCTTCCGAGGAACAATGGAAGCAGACCGTGGGATGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS GCA 90 bp GCATGGGTTCTAGCACTTCAGGGCCAGAAACCTTGTCCACTCCCATaGAGCCATAATAATCTGATCCAAAGGCGTAGAGCTGACCCTCAT +
Preference number: 5 (lower is better)
Translates to: AWVLALQGQKPCPLP*SHNNLIQRRRADPH
Trigger: ATGAGGGTCAGCTCTACGCCTTTGGATCAGATTATTATGGCTGCATGGGAGTGGACAAGGTTTCTGGCCCTGAAGTGCTAGAACCCATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp CCCACAGCTCGACATACTCCCCGAGGAGGGTGTAGACATCTTGTGTCTTGGAGGATTGTATTTTACTCCTaGGCAGAGCTCTGGAGACAT +
Preference number: 5 (lower is better)
Translates to: PTARHTPRGGCRHLVSWRIVFYS*AELWRH
Trigger: ATGTCTCCAGAGCTCTGCCAAGGAGTAAAATACAAT...CCTCCAAGACACAAGATGTCTACACCCTCCTCGGGGAGTATGTCGAGCTGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp GCAGTATCACTGAGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTAAGTTTAGTGCCCCCTaGCATGTTCACCCAGGTATA +
Preference number: 5 (lower is better)
Translates to: AVSLRSSQIARQGTVGRVKFSAP*HVHPGI
Trigger: TATACCTGGGTGAACATGCAAGGGGGCACTAAACTT...AACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCTCAGTGATACTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp CTTCCTCCCAGCACCAGCCTCTATACCACTAGCTTAAGGAAATGGCAAAATTTCTCAGGGCCAGAAACCTaGTCCACTCCCATGCAGCCA +
Preference number: 5 (lower is better)
Translates to: LPPSTSLYTTSLRKWQNFSGPET*STPMQP
Trigger: TGGCTGCATGGGAGTGGACAAGGTTTCTGGCCCTGA...GAAATTTTGCCATTTCCTTAAGCTAGTGGTATAGAGGCTGGTGCTGGGAGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp CAGCTCCAGAGCAGAAGCAATGCTCGTACTGAACACCTTAAACCCTGCCTCTCAAGCTTGTTGAACTCATaGAGTCCACAGGCCAGCACT +
Preference number: 5 (lower is better)
Translates to: QLQSRSNARTEHLKPCLSSLLNS*SPQAST
Trigger: AGTGCTGGCCTGTGGACTCAATGAGTTCAACAAGCT...TGAGAGGCAGGGTTTAAGGTGTTCAGTACGAGCATTGCTTCTGCTCTGGAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp CTAGGACATACACTGTCCTTGGAGAAGGTGGCTGCTCCTCTCAACAAGAACACACTCGGAAGCCTCCGCTaGGATCTGGAGTTTCAGATT +
Preference number: 5 (lower is better)
Translates to: LGHTLSLEKVAAPLNKNTLGSLR*DLEFQI
Trigger: AATCTGAAACTCCAGATCCAAGCGGAGGCTTCCGAG...TGTGTTCTTGTTGAGAGGAGCAGCCACCTTCTCCAAGGACAGTGTATGTCCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp AGGTCCTCCCAGATAGCAAGGCAAGGCACTGTAGGAAGGGTTACCTCCCCCTTGCCTCCTTCCAATTTCTaGTTGAGCTTTTGTAGTTGG +
Preference number: 5 (lower is better)
Translates to: RSSQIARQGTVGRVTSPLPPSNF*LSFCSW
Trigger: CCAACTACAAAAGCTCAACAAGAAATTGGAAGGAGG...CAAGGGGGAGGTAACCCTTCCTACAGTGCCTTGCCTTGCTATCTGGGAGGACCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 90 bp TTCAGGGCCAGAAACCTTGTCCACTCCCATGCAGCCATAATAATCTaGTCCAAAGGCGTAGAGCTGACCCTCATCTGTGACACAGACAGT +
Preference number: 5 (lower is better)
Translates to: FRARNLVHSHAAIII*SKGVELTLICDTDS
Trigger: ACTGTCTGTGTCACAGATGAGGGTCAGCTCTACGCCTTTGGATCAGATTATTATGGCTGCATGGGAGTGGACAAGGTTTCTGGCCCTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 90 bp GGCCTTTGGAACATCCACCCTCTGTGGTGTATAGTAATCCTCTTCTaGATCCAAACCCAGCCGTCCATATTCACCACAGCCCCAAGAGTA +
Preference number: 5 (lower is better)
Translates to: GLWNIHPLWCIVILF*IQTQPSIFTTAPRV
Trigger: TACTCTTGGGGCTGTGGTGAATATGGACGGCTGGGTTTGGATTCAGAAGAGGATTACTATACACCACAGAGGGTGGATGTTCCAAAGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 90 bp AAGGTCTGGAACATGATGCAGGGATCCAAAAATAGGCCGAGGCCATaGGGTACAGATATCAGAGCCATGTGGTCTCTCTGTGGGAGTCAT +
Preference number: 5 (lower is better)
Translates to: KVWNMMQGSKNRPRP*GTDIRAMWSLCGSH
Trigger: ATGACTCCCACAGAGAGACCACATGGCTCTGATATCTGTACCTCATGGCCTCGGCCTATTTTTGGATCCCTGCATCATGTTCCAGACCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 90 bp CAGCAACCGGCCTCGTTCATCAATAGCAGCTGTGTGAGTCTTGCCTaGGGCAATGGTACGGATTTTGTAAAAGGACAACTGTTTGGCCAA +
Preference number: 5 (lower is better)
Translates to: QQPASFINSSCVSLA*GNGTDFVKGQLFGQ
Trigger: TTGGCCAAACAGTTGTCCTTTTACAAAATCCGTACCATTGCCCCAGGCAAGACTCACACAGCTGCTATTGATGAACGAGGCCGGTTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 90 bp ACAATAAGAATGGTGTGCCAGCCACGGCAAGAAAGGTCTGGAACATaGTGCAGGGATCCAAAAATAGGCCGAGGCCATGAGGTACAGATA +
Preference number: 5 (lower is better)
Translates to: TIRMVCQPRQERSGT*CRDPKIGRGHEVQI
Trigger: TATCTGTACCTCATGGCCTCGGCCTATTTTTGGATCCCTGCATCATGTTCCAGACCTTTCTTGCCGTGGCTGGCACACCATTCTTATTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 90 bp ATTTCTGAGGTGTGGATTTTCCACCACCCCAAACATAGACTTCACTaGTTCGTGATGTTACCACAGCAATGGGTGCTTCCGTCACAGTGC +
Preference number: 5 (lower is better)
Translates to: ISEVWIFHHPKHRLH*FVMLPQQWVLPSQC
Trigger: GCACTGTGACGGAAGCACCCATTGCTGTGGTAACATCACGAACCAGTGAAGTCTATGTTTGGGGTGGTGGAAAATCCACACCTCAGAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp AGCCAAGTGTTGGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACACCTGCTCCACAGGATaGCTGAGGAAGAAGTTCAGC +
Preference number: 5 (lower is better)
Translates to: SQVLAQRINAGYTVTQSNTCSTG*LRKKFS
Trigger: GCTGAACTTCTTCCTCAGCAATCCTGTGGAGCAGGT...GTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCCAACACTTGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 90 bp CCCACCTGCTGGCCTCCTTCCAATTTCTTGTTGAGCTTTTGTAGTTaGGTAAACATCTGGAGGTTTTCTTGCTGGAGCTTCTGCTGTTCT +
Preference number: 5 (lower is better)
Translates to: PTCWPPSNFLLSFCS*VNIWRFSCWSFCCS
Trigger: AGAACAGCAGAAGCTCCAGCAAGAAAACCTCCAGATGTTTACCCAACTACAAAAGCTCAACAAGAAATTGGAAGGAGGCCAGCAGGTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp TTTATATTTTCCTTCATCCATCCAGATGTGCAATGCCTGGTGCTTAAATCCCAACGAGACCCTAATCACTaGCTTCCCGCCAAGGGGTCC +
Preference number: 5 (lower is better)
Translates to: FIFSFIHPDVQCLVLKSQRDPNH*LPAKGS
Trigger: GGACCCCTTGGCGGGAAGCAAGTGATTAGGGTCTCG...TTGGGATTTAAGCACCAGGCATTGCACATCTGGATGGATGAAGGAAAATATAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp GGATTTGGTGCTGGCTTTGGGCTTCTCAAGTACAAAGATGATACTGATTTACTGTTCAGCCCCAGCTTGTaGAACTCATTGAGTCCACAG +
Preference number: 5 (lower is better)
Translates to: GFGAGFGLLKYKDDTDLLFSPSL*NSLSPQ
Trigger: CTGTGGACTCAATGAGTTCAACAAGCTGGGGCTGAA...CAGTAAATCAGTATCATCTTTGTACTTGAGAAGCCCAAAGCCAGCACCAAATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp GGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACACTACCGGCAACCTTCCAATTTCTTGTaGAGCTTTTGTAGTTGGGTA +
Preference number: 5 (lower is better)
Translates to: GTEDKRRLYCNSKQHYRQPSNFL*SFCSWV
Trigger: TACCCAACTACAAAAGCTCAACAAGAAATTGGAAGG...TTGCCGGTAGTGTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp GGCACAGAGGATAAACGCAGGCTATACTGTAACTCAAAGCAACACTACCGGCAAAGTCTAAGTCAGGCTTaGGATCCATTTCCATTTCTT +
Preference number: 5 (lower is better)
Translates to: GTEDKRRLYCNSKQHYRQSLSQA*DPFPFL
Trigger: AAGAAATGGAAATGGATCCAAAGCCTGACTTAGACT...TTGCCGGTAGTGTTGCTTTGAGTTACAGTATAGCCTGCGTTTATCCTCTGTGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 90 bp CCTCCTTCCAATTTCTTGTTGAGCTTTTGTAGTTGGGTAAACATCTaGAGGTTTTCTTGCTGGAGCTTCTGCTGTTCTTCCAGACACTTT +
Preference number: 5 (lower is better)
Translates to: PPSNFLLSFCSWVNI*RFSCWSFCCSSRHF
Trigger: AAAGTGTCTGGAAGAACAGCAGAAGCTCCAGCAAGAAAACCTCCAGATGTTTACCCAACTACAAAAGCTCAACAAGAAATTGGAAGGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp GGATTTGGTGCTGGCTTTGGGCTTCTCAAGTACAAAGATGATACTGATTTACTGTGGTATGCTTCATGGTaGATGATTCCAGACATGCAC +
Preference number: 5 (lower is better)
Translates to: GFGAGFGLLKYKDDTDLLWYASW*MIPDMH
Trigger: GTGCATGTCTGGAATCATCAACCATGAAGCATACCA...CAGTAAATCAGTATCATCTTTGTACTTGAGAAGCCCAAAGCCAGCACCAAATCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS-3UTR CAA 90 bp TTTATATTTTCCTTCATCCATCCAGATGTGCAATGCCTGGTGCTTAAATCCCAACTCTTTGTAGGTGCATaGAGCAGAGTGACTTTTTCC +
Preference number: 5 (lower is better)
Translates to: FIFSFIHPDVQCLVLKSQLFVGA*SRVTFS
Trigger: GGAAAAAGTCACTCTGCTCAATGCACCTACAAAGAG...TTGGGATTTAAGCACCAGGCATTGCACATCTGGATGGATGAAGGAAAATATAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 72 bp TGGCCTCCCCAAAGGCACCGCGGCCCAGAACGCGGATaGGGATGTAGTGCAGCTCCTCCTGCTCCGCCGCCC +
Preference number: 6 (lower is better)
Translates to: WPPQRHRGPERG*GCSAAPPAPPP
Trigger: GGGCGGCGGAGCAGGAGGAGCTGCACTACATCCCCATCCGCGTTCTGGGCCGCGGTGCCTTTGGGGAGGCCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 72 bp CCACCAGTGAGTCGTCCTCGGTGCGGCGGTACAGCGTaGCCTCCCCAAAGGCACCGCGGCCCAGAACGCGGA +
Preference number: 6 (lower is better)
Translates to: PPVSRPRCGGTA*PPQRHRGPERG
Trigger: TCCGCGTTCTGGGCCGCGGTGCCTTTGGGGAGGCCACGCTGTACCGCCGCACCGAGGACGACTCACTGGTGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS GCA 72 bp CGGCACTGCAGGATCCAGCCGAGGGGGCCAGGCTCCTaGTGCACGCTGGGGCTCCGGAGGAACTTCAGATGC +
Preference number: 6 (lower is better)
Translates to: RHCRIQPRGPGS*CTLGLRRNFRC
Trigger: GCATCTGAAGTTCCTCCGGAGCCCCAGCGTGCAGCAGGAGCCTGGCCCCCTCGGCTGGATCCTGCAGTGCCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS GCA 72 bp AGCAGCAGAGGTCAGGGCTTTCCCAACACACGGCACTaGAGGATCCAGCCGAGGGGGCCAGGCTCCTGCTGC +
Preference number: 6 (lower is better)
Translates to: SSRGQGFPNTRH*RIQPRGPGSCC
Trigger: GCAGCAGGAGCCTGGCCCCCTCGGCTGGATCCTGCAGTGCCGTGTGTTGGGAAAGCCCTGACCTCTGCTGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 72 bp CCCCGCCACCCCCGGACTCGCTTCCGAAGTCCGAGTTaGTGGAATCGCAGTGTCGCTCGTACTCGCCCAGCA +
Preference number: 6 (lower is better)
Translates to: PRHPRTRFRSPS*WNRSVARTRPA
Trigger: TGCTGGGCGAGTACGAGCGACACTGCGATTCCATCAACTCGGACTTCGGAAGCGAGTCCGGGGGTGGCGGGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CAA 72 bp TCCCCGCCACCCCCGGACTCGCTTCCGAAGTCCGAGTaGATGGAATCGCAGTGTCGCTCGTACTCGCCCAGC +
Preference number: 6 (lower is better)
Translates to: SPPPPDSLPKSE*MESQCRSYSPS
Trigger: GCTGGGCGAGTACGAGCGACACTGCGATTCCATCAACTCGGACTTCGGAAGCGAGTCCGGGGGTGGCGGGGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS GCA 72 bp TCTCCTGCGGGTCCTGAGAAGGGGGAGATCCAGGAGTaGATCTGCAGCGGGCCTCTGCTCAGGATCCTGGTC +
Preference number: 6 (lower is better)
Translates to: SPAGPEKGEIQE*ICSGPLLRILV
Trigger: GACCAGGATCCTGAGCAGAGGCCCGCTGCAGATGCACTCCTGGATCTCCCCCTTCTCAGGACCCGCAGGAGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 72 bp CCGCACTTAAGGGAGCGGGGCTGTCAGGCATGGGAATaGACTCTGCGTTTTCCAGCTCCTTCCGAAGCCAGC +
Preference number: 6 (lower is better)
Translates to: PHLRERGCQAWE*TLRFPAPSEAS
Trigger: GCTGGCTTCGGAAGGAGCTGGAAAACGCAGAGTTCATTCCCATGCCTGACAGCCCCGCTCCCTTAAGTGCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS GCA 72 bp GAGCCTGCAACCTGTCAACCTCCACCTGCAGAGCACTaGACGCACAAGCAGCAGAGGTCAGGGCTTTCCCAA +
Preference number: 6 (lower is better)
Translates to: EPATCQPPPAEH*THKQQRSGLSQ
Trigger: TTGGGAAAGCCCTGACCTCTGCTGCTTGTGCGTGCAGTGCTCTGCAGGTGGAGGTTGACAGGTTGCAGGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 72 bp AGGAGTGCATCTGCAGCGGGCCTCTGCTCAGGATCCTaGTCGAGGCATGCGTGTACCAACTGGATCAGTTCC +
Preference number: 6 (lower is better)
Translates to: RSASAAGLCSGS*SRHACTNWISS
Trigger: GGAACTGATCCAGTTGGTACACGCATGCCTCGACCAGGATCCTGAGCAGAGGCCCGCTGCAGATGCACTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS GCA 72 bp TTTAACACCAGAGCCTGCAACCTGTCAACCTCCACCTaGAGAGCACTGCACGCACAAGCAGCAGAGGTCAGG +
Preference number: 6 (lower is better)
Translates to: FNTRACNLSTST*RALHAQAAEVR
Trigger: CCTGACCTCTGCTGCTTGTGCGTGCAGTGCTCTGCAGGTGGAGGTTGACAGGTTGCAGGCTCTGGTGTTAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 72 bp GCATGTTCACCCAGGTATATAGTTCCTTCTCCACGGTaGCCACAGCAAAGTGGGTGTTCCCCGCACACACCT +
Preference number: 6 (lower is better)
Translates to: ACSPRYIVPSPR*PQQSGCSPHTP
Trigger: AGGTGTGTGCGGGGAACACCCACTTTGCTGTGGTCACCGTGGAGAAGGAACTATATACCTGGGTGAACATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS GCA 72 bp GATATCAGAGCCATGTGGTCTCTCTGTGGGAGTCATTaGCAGGCGGCCATTACCACCATTACCCCAGGCAAA +
Preference number: 6 (lower is better)
Translates to: DIRAMWSLCGSH*QAAITTITPGK
Trigger: TTTGCCTGGGGTAATGGTGGTAATGGCCGCCTGGCAATGACTCCCACAGAGAGACCACATGGCTCTGATATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 72 bp GTATATAGTTCCTTCTCCACGGTGACCACAGCAAAGTaGGTGTTCCCCGCACACACCTGTCGAGCACTACAG +
Preference number: 6 (lower is better)
Translates to: VYSSFSTVTTAK*VFPAHTCRALQ
Trigger: CTGTAGTGCTCGACAGGTGTGTGCGGGGAACACCCACTTTGCTGTGGTCACCGTGGAGAAGGAACTATATAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CAA 72 bp AGATATCAGAGCCATGTGGTCTCTCTGTGGGAGTCATaGCCAGGCGGCCATTACCACCATTACCCCAGGCAA +
Preference number: 6 (lower is better)
Translates to: RYQSHVVSLWES*PGGHYHHYPRQ
Trigger: TTGCCTGGGGTAATGGTGGTAATGGCCGCCTGGCAATGACTCCCACAGAGAGACCACATGGCTCTGATATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 72 bp AGGCGGCCATTACCACCATTACCCCAGGCAAAGATGTaGTTATCGTCGGTGGCAGCAATGGTGAACTCATCG +
Preference number: 6 (lower is better)
Translates to: RRPLPPLPQAKM*LSSVAAMVNSS
Trigger: CGATGAGTTCACCATTGCTGCCACCGACGATAATCACATCTTTGCCTGGGGTAATGGTGGTAATGGCCGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CAA 90 bp CTTCCATCCCACGGTCTGCTTCCATTGTTCCTCGGAAGCCTCCGCTaGGATCTGGAGTTTCAGATTCCTGTTGACTGTCTTCCTCTTCAC +
Preference number: 6 (lower is better)
Translates to: LPSHGLLPLFLGSLR*DLEFQIPVDCLPLH
Trigger: GTGAAGAGGAAGACAGTCAACAGGAATCTGAAACTCCAGATCCAAGCGGAGGCTTCCGAGGAACAATGGAAGCAGACCGTGGGATGGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CAA 90 bp ATGAGGTACAGATATCAGAGCCATGTGGTCTCTCTGTGGGAGTCATaGCCAGGCGGCCATTACCACCATTACCCCAGGCAAAGATGTGAT +
Preference number: 6 (lower is better)
Translates to: MRYRYQSHVVSLWES*PGGHYHHYPRQRCD
Trigger: ATCACATCTTTGCCTGGGGTAATGGTGGTAATGGCCGCCTGGCAATGACTCCCACAGAGAGACCACATGGCTCTGATATCTGTACCTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 72 bp CATGCGTGTACCAACTGGATCAGTTCCAAAGAATACTaGCTCGAGTCAACTTCCATGGCCCGGATTCCCTGC +
Preference number: 6 (lower is better)
Translates to: HACTNWISSKEY*LESTSMARIPC
Trigger: GCAGGGAATCCGGGCCATGGAAGTTGACTCGAGTCAGTATTCTTTGGAACTGATCCAGTTGGTACACGCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 72 bp ACGGTCTGCTTCCATTGTTCCTCGGAAGCCTCCGCTTaGATCTGGAGTTTCAGATTCCTGTTGACTGTCTTC +
Preference number: 6 (lower is better)
Translates to: TVCFHCSSEASA*IWSFRFLLTVF
Trigger: GAAGACAGTCAACAGGAATCTGAAACTCCAGATCCAAGCGGAGGCTTCCGAGGAACAATGGAAGCAGACCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CAA 72 bp CACGGTCTGCTTCCATTGTTCCTCGGAAGCCTCCGCTaGGATCTGGAGTTTCAGATTCCTGTTGACTGTCTT +
Preference number: 6 (lower is better)
Translates to: HGLLPLFLGSLR*DLEFQIPVDCL
Trigger: AAGACAGTCAACAGGAATCTGAAACTCCAGATCCAAGCGGAGGCTTCCGAGGAACAATGGAAGCAGACCGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS GCA 72 bp TGGAGCTCTGAACCACAGTTCCGATGGACAGGCCACTaGTATTGGAACGGATGGTCTTGGAATTCAACACTT +
Preference number: 6 (lower is better)
Translates to: WSSEPQFRWTGH*YWNGWSWNSTL
Trigger: AAGTGTTGAATTCCAAGACCATCCGTTCCAATAGCAGTGGCCTGTCCATCGGAACTGTGGTTCAGAGCTCCA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 72 bp GTGTGGATTTTCCACCACCCCAAACATAGACTTCACTaGTTCGTGATGTTACCACAGCAATGGGTGCTTCCG +
Preference number: 6 (lower is better)
Translates to: VWIFHHPKHRLH*FVMLPQQWVLP
Trigger: CGGAAGCACCCATTGCTGTGGTAACATCACGAACCAGTGAAGTCTATGTTTGGGGTGGTGGAAAATCCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 72 bp TGCTTCCATTGTTCCTCGGAAGCCTCCGCTTGGATCTaGAGTTTCAGATTCCTGTTGACTGTCTTCCTCTTC +
Preference number: 6 (lower is better)
Translates to: CFHCSSEASAWI*SFRFLLTVFLF
Trigger: GAAGAGGAAGACAGTCAACAGGAATCTGAAACTCCAGATCCAAGCGGAGGCTTCCGAGGAACAATGGAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 72 bp TTTTCCACCACCCCAAACATAGACTTCACTGGTTCGTaGTGTTACCACAGCAATGGGTGCTTCCGTCACAGT +
Preference number: 6 (lower is better)
Translates to: FSTTPNIDFTGS*CYHSNGCFRHS
Trigger: ACTGTGACGGAAGCACCCATTGCTGTGGTAACATCACGAACCAGTGAAGTCTATGTTTGGGGTGGTGGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 72 bp AGAAACCTTGTCCACTCCCATGCAGCCATAATAATCTaGTCCAAAGGCGTAGAGCTGACCCTCATCTGTGAC +
Preference number: 6 (lower is better)
Translates to: RNLVHSHAAIII*SKGVELTLICD
Trigger: GTCACAGATGAGGGTCAGCTCTACGCCTTTGGATCAGATTATTATGGCTGCATGGGAGTGGACAAGGTTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 72 bp AACATCCACCCTCTGTGGTGTATAGTAATCCTCTTCTaGATCCAAACCCAGCCGTCCATATTCACCACAGCC +
Preference number: 6 (lower is better)
Translates to: NIHPLWCIVILF*IQTQPSIFTTA
Trigger: GGCTGTGGTGAATATGGACGGCTGGGTTTGGATTCAGAAGAGGATTACTATACACCACAGAGGGTGGATGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 72 bp GAAAGGTCCCATCACAGCCACATTGAACTGCAACAATaGTTAAGGCCTTTGGAACATCCACCCTCTGTGGTG +
Preference number: 6 (lower is better)
Translates to: ERSHHSHIELQQ*LRPLEHPPSVV
Trigger: CACCACAGAGGGTGGATGTTCCAAAGGCCTTAATCATTGTTGCAGTTCAATGTGGCTGTGATGGGACCTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS TCA 72 bp AACATGATGCAGGGATCCAAAAATAGGCCGAGGCCATaGGGTACAGATATCAGAGCCATGTGGTCTCTCTGT +
Preference number: 6 (lower is better)
Translates to: NMMQGSKNRPRP*GTDIRAMWSLC
Trigger: ACAGAGAGACCACATGGCTCTGATATCTGTACCTCATGGCCTCGGCCTATTTTTGGATCCCTGCATCATGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 72 bp GTGACACAGACAGTGAAATCATCCCCACACGACACCTaGTGGATAGCCTTCCCTTGTAACTTTTCTACATGC +
Preference number: 6 (lower is better)
Translates to: VTQTVKSSPHDT*WIAFPCNFSTC
Trigger: GCATGTAGAAAAGTTACAAGGGAAGGCTATCCACCAGGTGTCGTGTGGGGATGATTTCACTGTCTGTGTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 72 bp GCCTCGTTCATCAATAGCAGCTGTGTGAGTCTTGCCTaGGGCAATGGTACGGATTTTGTAAAAGGACAACTG +
Preference number: 6 (lower is better)
Translates to: ASFINSSCVSLA*GNGTDFVKGQL
Trigger: CAGTTGTCCTTTTACAAAATCCGTACCATTGCCCCAGGCAAGACTCACACAGCTGCTATTGATGAACGAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CAA 90 bp ACCACAGTTCCGATGGACAGGCCACTGCTATTGGAACGGATGGTCTaGGAATTCAACACTTTCTCAACAATAAGAATGGTGTGCCAGCCA +
Preference number: 6 (lower is better)
Translates to: TTVPMDRPLLLERMV*EFNTFSTIRMVCQP
Trigger: TGGCTGGCACACCATTCTTATTGTTGAGAAAGTGTTGAATTCCAAGACCATCCGTTCCAATAGCAGTGGCCTGTCCATCGGAACTGTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CAA 90 bp TCAACTTCCATGGCCCGGATTCCCTGCACGATCTTCACACATAGGTaGAGTGGGTTTGTAGCATCAAATGTTCTTTTCAGAGTAAGCAGT +
Preference number: 6 (lower is better)
Translates to: STSMARIPCTIFTHR*SGFVASNVLFRVSS
Trigger: ACTGCTTACTCTGAAAAGAACATTTGATGCTACAAACCCACTCAACCTATGTGTGAAGATCGTGCAGGGAATCCGGGCCATGGAAGTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CCA 72 bp ACACAGACAGTGAAATCATCCCCACACGACACCTGGTaGATAGCCTTCCCTTGTAACTTTTCTACATGCTTT +
Preference number: 6 (lower is better)
Translates to: TQTVKSSPHDTW*IAFPCNFSTCF
Trigger: AAAGCATGTAGAAAAGTTACAAGGGAAGGCTATCCACCAGGTGTCGTGTGGGGATGATTTCACTGTCTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS CAA 72 bp ATGGCCCGGATTCCCTGCACGATCTTCACACATAGGTaGAGTGGGTTTGTAGCATCAAATGTTCTTTTCAGA +
Preference number: 6 (lower is better)
Translates to: MARIPCTIFTHR*SGFVASNVLFR
Trigger: TCTGAAAAGAACATTTGATGCTACAAACCCACTCAACCTATGTGTGAAGATCGTGCAGGGAATCCGGGCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8
CDS GCA 72 bp TTTCAGAGTAAGCAGTTCAAAAATGACACAGCCAACTaGCCATATATCAGACTTGAAATTGTATTTTACTCC +
Preference number: 6 (lower is better)
Translates to: FQSKQFKNDTAN*PYIRLEIVFYS
Trigger: GGAGTAAAATACAATTTCAAGTCTGATATATGGGCAGTTGGCTGTGTCATTTTTGAACTGCTTACTCTGAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040992.8