Pregenerated sensors for NEIL3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039396

Ensembl transcript IDs: ENSMUST00000047768.11

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CCCAGGAGGCTCTGCAGAGCTGTGCCCCGCACACCAGTCACCGCCTaGCCCGGTAGCACTCGTGCCCGGATCTTCTCTCCATTCAGTGTA	+
Preference number: 5 (lower is better) Translates to: PRRLCRAVPRTPVTA*PGSTRARIFSPFSV Trigger: TACACTGAATGGAGAGAAGATCCGGGCACGAGTGCTACCGGGGCAGGCGGTGACTGGTGTGCGGGGCACAGCTCTGCAGAGCCTCCTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS GCA 90 bp	CAACTCGGAGAACACAACGGCGGTGGTGCATCTTGCACAGAGGGCTaGCATCACTTTTGGAATGATGGCCACGTGTCCTATTGGTTTGGA	+
Preference number: 5 (lower is better) Translates to: QLGEHNGGGASCTEG*HHFWNDGHVSYWFG Trigger: TCCAAACCAATAGGACACGTGGCCATCATTCCAAAAGTGATGGCAGCCCTCTGTGCAAGATGCACCACCGCCGTTGTGTTCTCCGAGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS CCA 90 bp	ATTAAACAGTCTCAAGAGTTTCCAGCCAGAATCCTTAGCATTCATTaGAGCAGCCGAGGTAGCGACATCAGCCAGGGAGGCGGCAGGGGA	+
Preference number: 5 (lower is better) Translates to: IKQSQEFPARILSIH*SSRGSDISQGGGRG Trigger: TCCCCTGCCGCCTCCCTGGCTGATGTCGCTACCTCGGCTGCTCCAATGAATGCTAAGGATTCTGGCTGGAAACTCTTGAGACTGTTTAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS TCA 90 bp	AGTACAAACCACACAGGACCACTGCTCTTCAGACTTCCGAGCCACTaGGTCCGTAAAGCAATCCTCTCCCCTAGGAGTCCAGCTGATTTC	+
Preference number: 5 (lower is better) Translates to: STNHTGPLLFRLPSH*VRKAILSPRSPADF Trigger: GAAATCAGCTGGACTCCTAGGGGAGAGGATTGCTTTACGGACTCAGTGGCTCGGAAGTCTGAAGAGCAGTGGTCCTGTGTGGTTTGTACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS TCA 90 bp	AGTGCTTCATTTTTGATGATGTTGCCCACGCCAGGCAACACCCTCTaGTCCAGCAACACATCACACAGCATCCGATCTCCCTGCTTTTTC	+
Preference number: 5 (lower is better) Translates to: SASFLMMLPTPGNTL*SSNTSHSIRSPCFF Trigger: GAAAAAGCAGGGAGATCGGATGCTGTGTGATGTGTTGCTGGATCAGAGGGTGTTGCCTGGCGTGGGCAACATCATCAAAAATGAAGCACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS GCA 90 bp	TTAGCCGAGGGTCTGTTTATGAGAGTACAAACCACACAGGACCACTaGTCTTCAGACTTCCGAGCCACTGAGTCCGTAAAGCAATCCTCT	+
Preference number: 5 (lower is better) Translates to: LAEGLFMRVQTTQDH*SSDFRATESVKQSS Trigger: AGAGGATTGCTTTACGGACTCAGTGGCTCGGAAGTCTGAAGAGCAGTGGTCCTGTGTGGTTTGTACTCTCATAAACAGACCCTCGGCTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS TCA 90 bp	GGATGGTTGAGTTATATAGTTTATTCCTTCTTTGGAGGGGTGCTGTaGATCACTAAAACCTATGTCTGTAGGGAGAAACATTTGAGATTC	+
Preference number: 5 (lower is better) Translates to: GWLSYIVYSFFGGVL*ITKTYVCREKHLRF Trigger: GAATCTCAAATGTTTCTCCCTACAGACATAGGTTTTAGTGATTCACAGCACCCCTCCAAAGAAGGAATAAACTATATAACTCAACCATCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS TCA 90 bp	AATCAGTCAAAACAAGGGTCGTATTTCCAAACGCAGTTTTCCTGTTaGTCTTTACTTCAGTGTGTGTGTTCTCAAAGTTATTACAAGGGT	+
Preference number: 5 (lower is better) Translates to: NQSKQGSYFQTQFSC*SLLQCVCSQSYYKG Trigger: ACCCTTGTAATAACTTTGAGAACACACACACTGAAGTAAAGATCAACAGGAAAACTGCGTTTGGAAATACGACCCTTGTTTTGACTGATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS GCA 72 bp	CTCTGCAGAGCTGTGCCCCGCACACCAGTCACCGCCTaGCCCGGTAGCACTCGTGCCCGGATCTTCTCTCCA	+
Preference number: 6 (lower is better) Translates to: LCRAVPRTPVTA*PGSTRARIFSP Trigger: TGGAGAGAAGATCCGGGCACGAGTGCTACCGGGGCAGGCGGTGACTGGTGTGCGGGGCACAGCTCTGCAGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS TCA 72 bp	CACACAGGACCACTGCTCTTCAGACTTCCGAGCCACTaGGTCCGTAAAGCAATCCTCTCCCCTAGGAGTCCA	+
Preference number: 6 (lower is better) Translates to: HTGPLLFRLPSH*VRKAILSPRSP Trigger: TGGACTCCTAGGGGAGAGGATTGCTTTACGGACTCAGTGGCTCGGAAGTCTGAAGAGCAGTGGTCCTGTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS GCA 72 bp	GAACACAACGGCGGTGGTGCATCTTGCACAGAGGGCTaGCATCACTTTTGGAATGATGGCCACGTGTCCTAT	+
Preference number: 6 (lower is better) Translates to: EHNGGGASCTEG*HHFWNDGHVSY Trigger: ATAGGACACGTGGCCATCATTCCAAAAGTGATGGCAGCCCTCTGTGCAAGATGCACCACCGCCGTTGTGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS CCA 72 bp	TCTCAAGAGTTTCCAGCCAGAATCCTTAGCATTCATTaGAGCAGCCGAGGTAGCGACATCAGCCAGGGAGGC	+
Preference number: 6 (lower is better) Translates to: SQEFPARILSIH*SSRGSDISQGG Trigger: GCCTCCCTGGCTGATGTCGCTACCTCGGCTGCTCCAATGAATGCTAAGGATTCTGGCTGGAAACTCTTGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS CCA 72 bp	CCATCTTTCCTCACAACTCGGAGAACACAACGGCGGTaGTGCATCTTGCACAGAGGGCTGCCATCACTTTTG	+
Preference number: 6 (lower is better) Translates to: PSFLTTRRTQRR*CILHRGLPSLL Trigger: CAAAAGTGATGGCAGCCCTCTGTGCAAGATGCACCACCGCCGTTGTGTTCTCCGAGTTGTGAGGAAAGATGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS TCA 72 bp	TTTTTGATGATGTTGCCCACGCCAGGCAACACCCTCTaGTCCAGCAACACATCACACAGCATCCGATCTCCC	+
Preference number: 6 (lower is better) Translates to: FLMMLPTPGNTL*SSNTSHSIRSP Trigger: GGGAGATCGGATGCTGTGTGATGTGTTGCTGGATCAGAGGGTGTTGCCTGGCGTGGGCAACATCATCAAAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS GCA 72 bp	TCTTTCCTCACAACTCGGAGAACACAACGGCGGTGGTaGATCTTGCACAGAGGGCTGCCATCACTTTTGGAA	+
Preference number: 6 (lower is better) Translates to: SFLTTRRTQRRW*ILHRGLPSLLE Trigger: TTCCAAAAGTGATGGCAGCCCTCTGTGCAAGATGCACCACCGCCGTTGTGTTCTCCGAGTTGTGAGGAAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS CAA 72 bp	GGTCCAATCTTCAGCACAGTTTTCATAATGGAGCGCTaGCCATGTCTGCAGAACGGGAAGGACAGGTCTGCC	+
Preference number: 6 (lower is better) Translates to: GPIFSTVFIMER*PCLQNGKDRSA Trigger: GGCAGACCTGTCCTTCCCGTTCTGCAGACATGGCAAGCGCTCCATTATGAAAACTGTGCTGAAGATTGGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS TCA 72 bp	TGCATCTTGCACAGAGGGCTGCCATCACTTTTGGAATaGTGGCCACGTGTCCTATTGGTTTGGAGTTCACTG	+
Preference number: 6 (lower is better) Translates to: CILHRGLPSLLE*WPRVLLVWSSL Trigger: CAGTGAACTCCAAACCAATAGGACACGTGGCCATCATTCCAAAAGTGATGGCAGCCCTCTGTGCAAGATGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS TCA 72 bp	CAGATCCTGCTTTACAGCACCTGTAGAAGAGAATGCTaGAATCCCGAGTCATCTTCACAAGGTGACAGGCCT	+
Preference number: 6 (lower is better) Translates to: QILLYSTCRREC*NPESSSQGDRP Trigger: AGGCCTGTCACCTTGTGAAGATGACTCGGGATTTCAGCATTCTCTTCTACAGGTGCTGTAAAGCAGGATCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS CAA 90 bp	CCATTATTAGGTCCAATCTTCAGCACAGTTTTCATAATGGAGCGCTaGCCATGTCTGCAGAACGGGAAGGACAGGTCTGCCCATTCAAAA	+
Preference number: 6 (lower is better) Translates to: PLLGPIFSTVFIMER*PCLQNGKDRSAHSK Trigger: TTTTGAATGGGCAGACCTGTCCTTCCCGTTCTGCAGACATGGCAAGCGCTCCATTATGAAAACTGTGCTGAAGATTGGACCTAATAATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS CCA 72 bp	TCCCCTAGGAGTCCAGCTGATTTCAGTGTTTCTTGTTaGCAGCTGGCATACTTGAACACATTGAGGGTTTTC	+
Preference number: 6 (lower is better) Translates to: SPRSPADFSVSC*QLAYLNTLRVF Trigger: GAAAACCCTCAATGTGTTCAAGTATGCCAGCTGCCAACAAGAAACACTGAAATCAGCTGGACTCCTAGGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS TCA 72 bp	TCTCTGTTGGCTTTCCACCGAATTTCTGAGTTCTACTaGAGAGTCATAGAAGCAGATCAAGTCTCTGGTGAG	+
Preference number: 6 (lower is better) Translates to: SLLAFHRISEFY*RVIEADQVSGE Trigger: CTCACCAGAGACTTGATCTGCTTCTATGACTCTTCAGTAGAACTCAGAAATTCGGTGGAAAGCCAACAGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS TCA 72 bp	GTTGAAGGCAATGGAATTTTCTCTATTCTTGAGCACTaGATCCAGAGGCCTTGTGGTCAAGCAAGCATCACA	+
Preference number: 6 (lower is better) Translates to: VEGNGIFSILEH*IQRPCGQASIT Trigger: TGTGATGCTTGCTTGACCACAAGGCCTCTGGATTCAGTGCTCAAGAATAGAGAAAATTCCATTGCCTTCAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS CAA 90 bp	AGGGCTGCCATCACTTTTGGAATGATGGCCACGTGTCCTATTGGTTaGGAGTTCACTGTTAGAAAGTCCAGAGTTGTAACTTTTAAGTTC	+
Preference number: 6 (lower is better) Translates to: RAAITFGMMATCPIG*EFTVRKSRVVTFKF Trigger: GAACTTAAAAGTTACAACTCTGGACTTTCTAACAGTGAACTCCAAACCAATAGGACACGTGGCCATCATTCCAAAAGTGATGGCAGCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS CCA 72 bp	CATATATCCAACTCTTCCATCACTCTGACTCTCTGTTaGCTTTCCACCGAATTTCTGAGTTCTACTGAAGAG	+
Preference number: 6 (lower is better) Translates to: HISNSSITLTLC*LSTEFLSSTEE Trigger: CTCTTCAGTAGAACTCAGAAATTCGGTGGAAAGCCAACAGAGAGTCAGAGTGATGGAAGAGTTGGATATATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS CAA 72 bp	ATCACTTTTGGAATGATGGCCACGTGTCCTATTGGTTaGGAGTTCACTGTTAGAAAGTCCAGAGTTGTAACT	+
Preference number: 6 (lower is better) Translates to: ITFGMMATCPIG*EFTVRKSRVVT Trigger: AGTTACAACTCTGGACTTTCTAACAGTGAACTCCAAACCAATAGGACACGTGGCCATCATTCCAAAAGTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS TCA 72 bp	CCTGCTTTTTCACTTCACTCTCTGCTCTTGAGAAACTaGACTTTGGTGAACATATATCCAACTCTTCCATCA	+
Preference number: 6 (lower is better) Translates to: PAFSLHSLLLRN*TLVNIYPTLPS Trigger: TGATGGAAGAGTTGGATATATGTTCACCAAAGTTCAGTTTCTCAAGAGCAGAGAGTGAAGTGAAAAAGCAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS CAA 90 bp	TCAGTGTGTGTGTTCTCAAAGTTATTACAAGGGTACTTCACTAAGTaGTTGAAGGCAATGGAATTTTCTCTATTCTTGAGCACTGAATCC	+
Preference number: 6 (lower is better) Translates to: SVCVFSKLLQGYFTK*LKAMEFSLFLSTES Trigger: GGATTCAGTGCTCAAGAATAGAGAAAATTCCATTGCCTTCAACAACTTAGTGAAGTACCCTTGTAATAACTTTGAGAACACACACACTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS CAA 90 bp	AAATCAGTCAAAACAAGGGTCGTATTTCCAAACGCAGTTTTCCTGTaGATCTTTACTTCAGTGTGTGTGTTCTCAAAGTTATTACAAGGG	+
Preference number: 6 (lower is better) Translates to: KSVKTRVVFPNAVFL*IFTSVCVFSKLLQG Trigger: CCCTTGTAATAACTTTGAGAACACACACACTGAAGTAAAGATCAACAGGAAAACTGCGTTTGGAAATACGACCCTTGTTTTGACTGATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047768.11
CDS CAA 72 bp	TTCTCAAAGTTATTACAAGGGTACTTCACTAAGTTGTaGAAGGCAATGGAATTTTCTCTATTCTTGAGCACT	+
Preference number: 6 (lower is better) Translates to: FSKLLQGYFTKL*KAMEFSLFLST Trigger: AGTGCTCAAGAATAGAGAAAATTCCATTGCCTTCAACAACTTAGTGAAGTACCCTTGTAATAACTTTGAGAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047768.11