Pregenerated sensors for NEIL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035121Ensembl transcript IDs: ENSMUST00000038229.5, ENSMUST00000225157.2, ENSMUST00000225841.2, ENSMUST00000226002.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTGGGGTCTCCAGCCACTGGGAGGGCACCAGGTAGGCTGATTAGCACTACCTTCCTTTGCCCTCATCCTTaGTCCCTGGCTGCTCCGGGC | + |
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Preference number: 2 (lower is better) Translates to: LGSPATGRAPGRLISTTFLCPHP*SLAAPG Trigger: GCCCGGAGCAGCCAGGGATCAAGGATGAGGGCAAAG...GAAGGTAGTGCTAATCAGCCTACCTGGTGCCCTCCCAGTGGCTGGAGACCCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225841.2 |
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| 3UTR CCA 72 bp | AACCAGTTCTCAAAACACTGCATAAGCAACCTAGCCTaGGATTATAGTATCCCCCAGCTGTTCACTCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: NQFSKHCISNLA*DYSIPQLFTLL Trigger: CAGCAGAGTGAACAGCTGGGGGATACTATAATCCCAGGCTAGGTTGCTTATGCAGTGTTTTGAGAACTGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| 3UTR TCA 72 bp | TGCTACTCCAGTTCCATAAAGCTGTTACTAACAACCTaGAAGATTGCTTCTTTACATCCCCAGACACGCAAA | + |
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Preference number: 3 (lower is better) Translates to: CYSSSIKLLLTT*KIASLHPQTRK Trigger: TTTGCGTGTCTGGGGATGTAAAGAAGCAATCTTTCAGGTTGTTAGTAACAGCTTTATGGAACTGGAGTAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| 3UTR GCA 72 bp | CAGTTCCATAAAGCTGTTACTAACAACCTGAAAGATTaGTTCTTTACATCCCCAGACACGCAAATTCTTCAA | + |
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Preference number: 3 (lower is better) Translates to: QFHKAVTNNLKD*FFTSPDTQILQ Trigger: TTGAAGAATTTGCGTGTCTGGGGATGTAAAGAAGCAATCTTTCAGGTTGTTAGTAACAGCTTTATGGAACTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR TCA 90 bp | GCTGCACACCACCAGTCATGCTCTTTTCAGACTCACGGCTGCTCCGGGCAGTTTCCTGCAGAGGGTTCCTaGGCACTGGGACCCAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: AAHHQSCSFQTHGCSGQFPAEGS*ALGPKA Trigger: GGCCTTGGGTCCCAGTGCTCAGGAACCCTCTGCAGG...AAACTGCCCGGAGCAGCCGTGAGTCTGAAAAGAGCATGACTGGTGGTGTGCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR TCA 90 bp | CTGGGGTCTCCAGCCACTGGGAGGGCACCAGGTAGGCTGATTAGCACTACCTTCGCTGTGGGCTGCTGTTaGGTGGCTCCATCTCCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: LGSPATGRAPGRLISTTFAVGCC*VAPSPH Trigger: ATGAGGAGATGGAGCCACTCAACAGCAGCCCACAGC...GAAGGTAGTGCTAATCAGCCTACCTGGTGCCCTCCCAGTGGCTGGAGACCCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 |
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| CDS-3UTR CCA 90 bp | GCTGCACACCACCAGTCATGCTCTTTTCAGACTCACGGCTGCTCCGGGCAGTTTAGGGTTCCTGAGCACTaGGACCCAAGGCCAGCTCTC | + |
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Preference number: 4 (lower is better) Translates to: AAHHQSCSFQTHGCSGQFRVPEH*DPRPAL Trigger: GAGAGCTGGCCTTGGGTCCCAGTGCTCAGGAACCCT...AAACTGCCCGGAGCAGCCGTGAGTCTGAAAAGAGCATGACTGGTGGTGTGCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR TCA 90 bp | AGCTGCACACCACCAGTCATGCTCTTTTCAGACTCACGGCTGCTCCGGGCAGTTGCTGTGGGCTGCTGTTaGGTGGCTCCATCTCCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: SCTPPVMLFSDSRLLRAVAVGCC*VAPSPH Trigger: ATGAGGAGATGGAGCCACTCAACAGCAGCCCACAGC...AACTGCCCGGAGCAGCCGTGAGTCTGAAAAGAGCATGACTGGTGGTGTGCAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR TCA 90 bp | CTGGGGTCTCCAGCCACTGGGAGGGCACCAGGTAGGCTGATTAGCACTACCTTCCAAATAAACCAAACCTaGCCTCCAGCCACCTCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: LGSPATGRAPGRLISTTFQINQT*PPATSG Trigger: CCCAGAGGTGGCTGGAGGTCAGGTTTGGTTTATTTG...GAAGGTAGTGCTAATCAGCCTACCTGGTGCCCTCCCAGTGGCTGGAGACCCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 |
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| CDS-3UTR CCA 90 bp | CTCATCCTTGATCCCTGGCTGCTCCGGGCAGTTTTTCCCCAGTCCACTGTCAGGGTCTTGACCACCTTCTaGCCCACAAAGGGGGAGACA | + |
|
Preference number: 4 (lower is better) Translates to: LILDPWLLRAVFPQSTVRVLTTF*PTKGET Trigger: TGTCTCCCCCTTTGTGGGCCAGAAGGTGGTCAAGAC...CCTGACAGTGGACTGGGGAAAAACTGCCCGGAGCAGCCAGGGATCAAGGATGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000225841.2 |
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| CDS-3UTR CCA 90 bp | ACTGGGAGGGCACCAGGTAGGCTGATTAGCACTACCTTCCTGAAGCTTTGCCCTAGGGTTCCTGAGCACTaGGACCCAAGGCCAGCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: TGRAPGRLISTTFLKLCPRVPEH*DPRPAL Trigger: GAGAGCTGGCCTTGGGTCCCAGTGCTCAGGAACCCT...AGGGCAAAGCTTCAGGAAGGTAGTGCTAATCAGCCTACCTGGTGCCCTCCCAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 |
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| CDS-3UTR TCA 90 bp | GCTGCACACCACCAGTCATGCTCTTTTCAGACTCACGGCTGCTCCGGGCAGTTTGGAAGAACTCAGGCATaGACCGAGAGAGAGGGGATG | + |
|
Preference number: 4 (lower is better) Translates to: AAHHQSCSFQTHGCSGQFGRTQA*TEREGM Trigger: CATCCCCTCTCTCTCGGTTCATGCCTGAGTTCTTCC...AAACTGCCCGGAGCAGCCGTGAGTCTGAAAAGAGCATGACTGGTGGTGTGCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR TCA 90 bp | ATCCTTGATCCCTGGCTGCTCCGGGCAGTTTTTCCCCAGTCCACTGTCAGGGTTGGAAGAACTCAGGCATaGACCGAGAGAGAGGGGATG | + |
|
Preference number: 4 (lower is better) Translates to: ILDPWLLRAVFPQSTVRVGRTQA*TEREGM Trigger: CATCCCCTCTCTCTCGGTTCATGCCTGAGTTCTTCC...AACCCTGACAGTGGACTGGGGAAAAACTGCCCGGAGCAGCCAGGGATCAAGGAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000225841.2 |
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| CDS-3UTR GCA 90 bp | CTGGGGTCTCCAGCCACTGGGAGGGCACCAGGTAGGCTGATTAGCACTACCTTCTCCACAGCCTCTTTCTaGCACATTCCCTGTATAGGC | + |
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Preference number: 4 (lower is better) Translates to: LGSPATGRAPGRLISTTFSTASF*HIPCIG Trigger: GCCTATACAGGGAATGTGGCAGAAAGAGGCTGTGGA...GAAGGTAGTGCTAATCAGCCTACCTGGTGCCCTCCCAGTGGCTGGAGACCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 |
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| CDS-3UTR CCA 90 bp | GCTGCACACCACCAGTCATGCTCTTTTCAGACTCACGGCTGCTCCGGGCAGTTTGTCTTGACCACCTTCTaGCCCACAAAGGGGGAGACA | + |
|
Preference number: 4 (lower is better) Translates to: AAHHQSCSFQTHGCSGQFVLTTF*PTKGET Trigger: TGTCTCCCCCTTTGTGGGCCAGAAGGTGGTCAAGAC...AAACTGCCCGGAGCAGCCGTGAGTCTGAAAAGAGCATGACTGGTGGTGTGCAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR CCA 90 bp | AGCTGCACACCACCAGTCATGCTCTTTTCAGACTCACGGCTGCTCCGGGCAGTTTACCAGCCTGGGCACTaGGTCTCTCCAGTCACCTTT | + |
|
Preference number: 4 (lower is better) Translates to: SCTPPVMLFSDSRLLRAVYQPGH*VSPVTF Trigger: AAAGGTGACTGGAGAGACCCAGTGCCCAGGCTGGTA...AACTGCCCGGAGCAGCCGTGAGTCTGAAAAGAGCATGACTGGTGGTGTGCAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR CCA 90 bp | TCTCCAGCCACTGGGAGGGCACCAGGTAGGCTGATTAGCACTACCTTCCTGAAGTACCAGCCTGGGCACTaGGTCTCTCCAGTCACCTTT | + |
|
Preference number: 4 (lower is better) Translates to: SPATGRAPGRLISTTFLKYQPGH*VSPVTF Trigger: AAAGGTGACTGGAGAGACCCAGTGCCCAGGCTGGTA...CTTCAGGAAGGTAGTGCTAATCAGCCTACCTGGTGCCCTCCCAGTGGCTGGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 |
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| CDS-3UTR CCA 90 bp | ACTGGGAGGGCACCAGGTAGGCTGATTAGCACTACCTTCCTGAAGCTTTGCCCTCCTCTGGAGCCCATCTaGGGGCCCAAATGTCTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: TGRAPGRLISTTFLKLCPPLEPI*GPKCLL Trigger: AAGGAGACATTTGGGCCCCCAGATGGGCTCCAGAGG...AGGGCAAAGCTTCAGGAAGGTAGTGCTAATCAGCCTACCTGGTGCCCTCCCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR TCA 90 bp | TCTCCAGCCACTGGGAGGGCACCAGGTAGGCTGATTAGCACTACCTTCCTGAAGGGGGAGACAAGATGGTaGAACTTCCTCACAGATGGC | + |
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Preference number: 4 (lower is better) Translates to: SPATGRAPGRLISTTFLKGETRW*NFLTDG Trigger: GCCATCTGTGAGGAAGTTTCACCATCTTGTCTCCCC...CTTCAGGAAGGTAGTGCTAATCAGCCTACCTGGTGCCCTCCCAGTGGCTGGAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 |
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| CDS-3UTR TCA 90 bp | ATCCTTGATCCCTGGCTGCTCCGGGCAGTTTTTCCCCAGTCCACTGTCAGGGTTGGGGAGACAAGATGGTaGAACTTCCTCACAGATGGC | + |
|
Preference number: 4 (lower is better) Translates to: ILDPWLLRAVFPQSTVRVGETRW*NFLTDG Trigger: GCCATCTGTGAGGAAGTTTCACCATCTTGTCTCCCC...AACCCTGACAGTGGACTGGGGAAAAACTGCCCGGAGCAGCCAGGGATCAAGGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000225841.2 |
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| CDS-3UTR TCA 90 bp | GCTGCACACCACCAGTCATGCTCTTTTCAGACTCACGGCTGCTCCGGGCAGTTTCAAATAAACCAAACCTaGCCTCCAGCCACCTCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: AAHHQSCSFQTHGCSGQFQINQT*PPATSG Trigger: CCCAGAGGTGGCTGGAGGTCAGGTTTGGTTTATTTG...AAACTGCCCGGAGCAGCCGTGAGTCTGAAAAGAGCATGACTGGTGGTGTGCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR CCA 90 bp | TCTCCAGCCACTGGGAGGGCACCAGGTAGGCTGATTAGCACTACCTTCCTGAAGCCACCACCACTAAAATaGAGTACCAGCCTGGGCACT | + |
|
Preference number: 4 (lower is better) Translates to: SPATGRAPGRLISTTFLKPPPLK*STSLGT Trigger: AGTGCCCAGGCTGGTACTCCATTTTAGTGGTGGTGG...CTTCAGGAAGGTAGTGCTAATCAGCCTACCTGGTGCCCTCCCAGTGGCTGGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 |
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| CDS-3UTR CCA 90 bp | GCTGCACACCACCAGTCATGCTCTTTTCAGACTCACGGCTGCTCCGGGCAGTTTTGCCGTTCCTTGCCTTaGAATTTGTCCCGAAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: AAHHQSCSFQTHGCSGQFCRSLP*NLSRSQ Trigger: CTGGCTTCGGGACAAATTCCAAGGCAAGGAACGGCA...AAACTGCCCGGAGCAGCCGTGAGTCTGAAAAGAGCATGACTGGTGGTGTGCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR TCA 90 bp | GCTGCACACCACCAGTCATGCTCTTTTCAGACTCACGGCTGCTCCGGGCAGTTTTGGGGGAGGGCTCCATaGCATCTGGCAGTTATAAAA | + |
|
Preference number: 4 (lower is better) Translates to: AAHHQSCSFQTHGCSGQFWGRAP*HLAVIK Trigger: TTTTATAACTGCCAGATGTCATGGAGCCCTCCCCCA...AAACTGCCCGGAGCAGCCGTGAGTCTGAAAAGAGCATGACTGGTGGTGTGCAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR TCA 90 bp | ATCCTTGATCCCTGGCTGCTCCGGGCAGTTTTTCCCCAGTCCACTGTCAGGGTTTGGGGGAGGGCTCCATaGCATCTGGCAGTTATAAAA | + |
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Preference number: 4 (lower is better) Translates to: ILDPWLLRAVFPQSTVRVWGRAP*HLAVIK Trigger: TTTTATAACTGCCAGATGTCATGGAGCCCTCCCCCA...AACCCTGACAGTGGACTGGGGAAAAACTGCCCGGAGCAGCCAGGGATCAAGGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000225841.2 |
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| CDS-3UTR TCA 90 bp | CTGGGGTCTCCAGCCACTGGGAGGGCACCAGGTAGGCTGATTAGCACTACCTTCAGGCTTCATTCTTTATaGTGTTCCCTAATCCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: LGSPATGRAPGRLISTTFRLHSL*CSLILR Trigger: TCTCAGGATTAGGGAACATCATAAAGAATGAAGCCT...GAAGGTAGTGCTAATCAGCCTACCTGGTGCCCTCCCAGTGGCTGGAGACCCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 |
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| CDS-3UTR CCA 90 bp | CTGGGGTCTCCAGCCACTGGGAGGGCACCAGGTAGGCTGATTAGCACTACCTTCTACATAGAATTAACTTaGAATTTGTCCCGAAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: LGSPATGRAPGRLISTTFYIELT*NLSRSQ Trigger: CTGGCTTCGGGACAAATTCCAAGTTAATTCTATGTA...GAAGGTAGTGCTAATCAGCCTACCTGGTGCCCTCCCAGTGGCTGGAGACCCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225841.2 |
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| CDS-3UTR TCA 90 bp | TCTCCAGCCACTGGGAGGGCACCAGGTAGGCTGATTAGCACTACCTTCCTGAAGAGGCTTCATTCTTTATaGTGTTCCCTAATCCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: SPATGRAPGRLISTTFLKRLHSL*CSLILR Trigger: TCTCAGGATTAGGGAACATCATAAAGAATGAAGCCT...CTTCAGGAAGGTAGTGCTAATCAGCCTACCTGGTGCCCTCCCAGTGGCTGGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 |
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| CDS-3UTR CCA 90 bp | ATCCTACGGATGAATGTCAGCAATACTGACTCTCCTGAACTTCCTTACCCTGATCCACCACCACTAAAATaGAGTACCAGCCTGGGCACT | + |
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Preference number: 4 (lower is better) Translates to: ILRMNVSNTDSPELPYPDPPPLK*STSLGT Trigger: AGTGCCCAGGCTGGTACTCCATTTTAGTGGTGGTGG...ATCAGGGTAAGGAAGTTCAGGAGAGTCAGTATTGCTGACATTCATCCGTAGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR CCA 90 bp | AAGAAGAAAGAAATTAGAGGGCCTCAAAATCAACCAGTTCTCAAAACACTGCATGAGGACGGGAGATTCTaGGGCCCCTTGGAGGACAGC | + |
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Preference number: 4 (lower is better) Translates to: KKKEIRGPQNQPVLKTLHEDGRF*GPLEDS Trigger: GCTGTCCTCCAAGGGGCCCCAGAATCTCCCGTCCTC...ATGCAGTGTTTTGAGAACTGGTTGATTTTGAGGCCCTCTAATTTCTTTCTTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR TCA 90 bp | ATCCTACGGATGAATGTCAGCAATACTGACTCTCCTGAACTTCCTTACCCTGATCAAATGTCTCCTTCATaGCCTGGTGACCAGAAGGAC | + |
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Preference number: 4 (lower is better) Translates to: ILRMNVSNTDSPELPYPDQMSPS*PGDQKD Trigger: GTCCTTCTGGTCACCAGGTCATGAAGGAGACATTTG...ATCAGGGTAAGGAAGTTCAGGAGAGTCAGTATTGCTGACATTCATCCGTAGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR GCA 90 bp | AAGAAGAAAGAAATTAGAGGGCCTCAAAATCAACCAGTTCTCAAAACACTGCATTCCACAGCCTCTTTCTaGCACATTCCCTGTATAGGC | + |
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Preference number: 4 (lower is better) Translates to: KKKEIRGPQNQPVLKTLHSTASF*HIPCIG Trigger: GCCTATACAGGGAATGTGGCAGAAAGAGGCTGTGGA...ATGCAGTGTTTTGAGAACTGGTTGATTTTGAGGCCCTCTAATTTCTTTCTTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR CCA 90 bp | AAGAAGAAAGAAATTAGAGGGCCTCAAAATCAACCAGTTCTCAAAACACTGCATTTTCAGCAGATCTACTaGGAACAGGCTCCCCAGATC | + |
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Preference number: 4 (lower is better) Translates to: KKKEIRGPQNQPVLKTLHFQQIY*EQAPQI Trigger: GATCTGGGGAGCCTGTTCCCAGTAGATCTGCTGAAA...ATGCAGTGTTTTGAGAACTGGTTGATTTTGAGGCCCTCTAATTTCTTTCTTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS TCA 90 bp | CTGGGAACAGGCTCCCCAGATCCAGAGGGACCTGCAGAGGGTTCCTaGGCACTGGGACCCAAGGCCAGCTCTCGGTCCACAGCCTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: LGTGSPDPEGPAEGS*ALGPKASSRSTASF Trigger: GAAAGAGGCTGTGGACCGAGAGCTGGCCTTGGGTCCCAGTGCTCAGGAACCCTCTGCAGGTCCCTCTGGATCTGGGGAGCCTGTTCCCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 ENSMUST00000226002.2 |
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| CDS CCA 90 bp | CAGGCTCCCCAGATCCAGAGGGACCTGCAGAGGGTTCCTGAGCACTaGGACCCAAGGCCAGCTCTCGGTCCACAGCCTCTTTCTGCCACA | + |
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Preference number: 5 (lower is better) Translates to: QAPQIQRDLQRVPEH*DPRPALGPQPLSAT Trigger: TGTGGCAGAAAGAGGCTGTGGACCGAGAGCTGGCCTTGGGTCCCAGTGCTCAGGAACCCTCTGCAGGTCCCTCTGGATCTGGGGAGCCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 ENSMUST00000226002.2 |
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| CDS-3UTR CAA 90 bp | CTCATCCTTGATCCCTGGCTGCTCCGGGCAGTTTTTCCCCAGTCCACTGTCAGGGGCTGTGGGCTGCTGTaGAGTGGCTCCATCTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: LILDPWLLRAVFPQSTVRGCGLL*SGSISS Trigger: TGAGGAGATGGAGCCACTCAACAGCAGCCCACAGCC...CCTGACAGTGGACTGGGGAAAAACTGCCCGGAGCAGCCAGGGATCAAGGATGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000225841.2 |
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| CDS-3UTR CAA 90 bp | GCTGCACACCACCAGTCATGCTCTTTTCAGACTCACGGCTGCTCCGGGCAGTTTGGCTGTGGGCTGCTGTaGAGTGGCTCCATCTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: AAHHQSCSFQTHGCSGQFGCGLL*SGSISS Trigger: TGAGGAGATGGAGCCACTCAACAGCAGCCCACAGCC...AAACTGCCCGGAGCAGCCGTGAGTCTGAAAAGAGCATGACTGGTGGTGTGCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS-3UTR CAA 90 bp | ACTGGGAGGGCACCAGGTAGGCTGATTAGCACTACCTTCCTGAAGCTTTGCCCTGTGCCGTTCCTTGCCTaGGAATTTGTCCCGAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: TGRAPGRLISTTFLKLCPVPFLA*EFVPKP Trigger: TGGCTTCGGGACAAATTCCAAGGCAAGGAACGGCAC...AGGGCAAAGCTTCAGGAAGGTAGTGCTAATCAGCCTACCTGGTGCCCTCCCAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS CCA 90 bp | CTGCTGAGGGGATCTTCCCAAGATTATATGTTTCAGCAGATCTACTaGGAACAGGCTCCCCAGATCCAGAGGGACCTGCAGAGGGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: LLRGSSQDYMFQQIY*EQAPQIQRDLQRVP Trigger: AGGAACCCTCTGCAGGTCCCTCTGGATCTGGGGAGCCTGTTCCCAGTAGATCTGCTGAAACATATAATCTTGGGAAGATCCCCTCAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 ENSMUST00000226002.2 |
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| CDS-3UTR CAA 90 bp | TCTCCAGCCACTGGGAGGGCACCAGGTAGGCTGATTAGCACTACCTTCCTGAAGCTCCAGTCACCTTTTTaGTTAGCTTTCTTTGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: SPATGRAPGRLISTTFLKLQSPF*LAFFAL Trigger: CAGAGCAAAGAAAGCTAACAAAAAAGGTGACTGGAG...CTTCAGGAAGGTAGTGCTAATCAGCCTACCTGGTGCCCTCCCAGTGGCTGGAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 |
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| CDS TCA 90 bp | GGTAGGCTGATTAGCACTACCTTCCTGAAGCTTTGCCCTCATCCTTaGTCCCTCTTGGAATTTGTCCCGAAGCCAGTCCTTACTGAACTC | + |
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Preference number: 5 (lower is better) Translates to: GRLISTTFLKLCPHP*SLLEFVPKPVLTEL Trigger: GAGTTCAGTAAGGACTGGCTTCGGGACAAATTCCAAGAGGGATCAAGGATGAGGGCAAAGCTTCAGGAAGGTAGTGCTAATCAGCCTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000225157.2 ENSMUST00000226002.2 |
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| CDS CCA 90 bp | ACCCAGATACTGCCAAATAAACCAAACCTGACCTCCAGCCACCTCTaGGCATCTGCTGAGGGGATCTTCCCAAGATTATATGTTTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: TQILPNKPNLTSSHL*ASAEGIFPRLYVSA Trigger: TGCTGAAACATATAATCTTGGGAAGATCCCCTCAGCAGATGCCCAGAGGTGGCTGGAGGTCAGGTTTGGTTTATTTGGCAGTATCTGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 ENSMUST00000226002.2 |
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| CDS-3UTR CAA 90 bp | TCTCCAGCCACTGGGAGGGCACCAGGTAGGCTGATTAGCACTACCTTCCTGAAGTTACATAGAATTAACTaGGAATTTGTCCCGAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: SPATGRAPGRLISTTFLKLHRIN*EFVPKP Trigger: TGGCTTCGGGACAAATTCCAAGTTAATTCTATGTAA...CTTCAGGAAGGTAGTGCTAATCAGCCTACCTGGTGCCCTCCCAGTGGCTGGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225841.2 |
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| CDS-3UTR CAA 90 bp | ATCCTACGGATGAATGTCAGCAATACTGACTCTCCTGAACTTCCTTACCCTGATGTGACCAGAAGGACATaGTTCCTTCTGGTAGATCTG | + |
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Preference number: 5 (lower is better) Translates to: ILRMNVSNTDSPELPYPDVTRRT*FLLVDL Trigger: CAGATCTACCAGAAGGAACAATGTCCTTCTGGTCAC...ATCAGGGTAAGGAAGTTCAGGAGAGTCAGTATTGCTGACATTCATCCGTAGGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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| CDS GCA 72 bp | TCTACTGGGAACAGGCTCCCCAGATCCAGAGGGACCTaGAGAGGGTTCCTGAGCACTGGGACCCAAGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: STGNRLPRSRGT*RGFLSTGTQGQ Trigger: CTGGCCTTGGGTCCCAGTGCTCAGGAACCCTCTGCAGGTCCCTCTGGATCTGGGGAGCCTGTTCCCAGTAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 ENSMUST00000226002.2 |
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| CDS CCA 72 bp | CAGATCCAGAGGGACCTGCAGAGGGTTCCTGAGCACTaGGACCCAAGGCCAGCTCTCGGTCCACAGCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: QIQRDLQRVPEH*DPRPALGPQPL Trigger: AAGAGGCTGTGGACCGAGAGCTGGCCTTGGGTCCCAGTGCTCAGGAACCCTCTGCAGGTCCCTCTGGATCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 ENSMUST00000226002.2 |
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| CDS CCA 72 bp | CACAGCCTCTTTCTGCCACATTCCCTGTATAGGCTGTaGGCTGCTGTTGAGTGGCTCCATCTCCTCATCTGG | + |
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Preference number: 6 (lower is better) Translates to: HSLFLPHSLYRL*AAVEWLHLLIW Trigger: CCAGATGAGGAGATGGAGCCACTCAACAGCAGCCCACAGCCTATACAGGGAATGTGGCAGAAAGAGGCTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 ENSMUST00000226002.2 |
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| CDS CCA 72 bp | CCACATTCCCTGTATAGGCTGTGGGCTGCTGTTGAGTaGCTCCATCTCCTCATCTGGATCAAACCGAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: PHSLYRLWAAVE*LHLLIWIKPKE Trigger: TTCCTTCGGTTTGATCCAGATGAGGAGATGGAGCCACTCAACAGCAGCCCACAGCCTATACAGGGAATGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 ENSMUST00000226002.2 |
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| CDS CAA 72 bp | TTCTGCCACATTCCCTGTATAGGCTGTGGGCTGCTGTaGAGTGGCTCCATCTCCTCATCTGGATCAAACCGA | + |
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Preference number: 6 (lower is better) Translates to: FCHIPCIGCGLL*SGSISSSGSNR Trigger: TCGGTTTGATCCAGATGAGGAGATGGAGCCACTCAACAGCAGCCCACAGCCTATACAGGGAATGTGGCAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 ENSMUST00000226002.2 |
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| CDS CAA 90 bp | ACAGCCTCTTTCTGCCACATTCCCTGTATAGGCTGTGGGCTGCTGTaGAGTGGCTCCATCTCCTCATCTGGATCAAACCGAAGGAATAAT | + |
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Preference number: 6 (lower is better) Translates to: TASFCHIPCIGCGLL*SGSISSSGSNRRNN Trigger: ATTATTCCTTCGGTTTGATCCAGATGAGGAGATGGAGCCACTCAACAGCAGCCCACAGCCTATACAGGGAATGTGGCAGAAAGAGGCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038229.5 ENSMUST00000225841.2 ENSMUST00000226002.2 |
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| CDS CAA 72 bp | TTCCTTCTGGTAGATCTGTGTGTGCCGTTCCTTGCCTaGGAATTTGTCCCGAAGCCAGTCCTTACTGAACTC | + |
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Preference number: 6 (lower is better) Translates to: FLLVDLCVPFLA*EFVPKPVLTEL Trigger: GAGTTCAGTAAGGACTGGCTTCGGGACAAATTCCAAGGCAAGGAACGGCACACACAGATCTACCAGAAGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038229.5 |
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