RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NEGR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040037

Ensembl transcript IDs: ENSMUST00000041425.12, ENSMUST00000074015.11, ENSMUST00000106065.2, ENSMUST00000175773.2

Found 216 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCGCGTACAGACGGCCGATTGTATCCCACGCTGCTTCAAGCTAACTaGACCAGATTGGATCCAGCCATCAGCACTCCCAGAGACTCCTTA +
Preference number: 1 (lower is better)
Translates to: PRTDGRLYPTLLQAN*TRLDPAISTPRDSL
Trigger: TAAGGAGTCTCTGGGAGTGCTGATGGCTGGATCCAATCTGGTGCAGTTAGCTTGAAGCAGCGTGGGATACAATCGGCCGTCTGTACGCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR GCA 90 bp ACAAAAGGCGTCACCCGCGTACAGACGGCCGATTGTATCCCACGCTaGTTCAAGCTAACTGCACCAGATTGGATCCAGCCATCAGCACTC +
Preference number: 1 (lower is better)
Translates to: TKGVTRVQTADCIPR*FKLTAPDWIQPSAL
Trigger: GAGTGCTGATGGCTGGATCCAATCTGGTGCAGTTAGCTTGAAGCAGCGTGGGATACAATCGGCCGTCTGTACGCGGGTGACGCCTTTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR TCA 90 bp GGCCCTGATGGGCAAGTTTGTGTGCTGCCTGCTGCTATAGTCATTTaGTCATGCTTCAGATATGGTCACAGCTGCAGGGAACATGGTGCA +
Preference number: 1 (lower is better)
Translates to: GPDGQVCVLPAAIVI*SCFRYGHSCREHGA
Trigger: TGCACCATGTTCCCTGCAGCTGTGACCATATCTGAAGCATGATCAAATGACTATAGCAGCAGGCAGCACACAAACTTGCCCATCAGGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR GCA 90 bp TTTAACTCTAGGGAAACGGTCACTGTAGAATACGCATTCTCCAACTaGTTCTCTCCCCAAACAGCGGTTCAGGTGGCCAACACTCCATGG +
Preference number: 1 (lower is better)
Translates to: FNSRETVTVEYAFSN*FSPQTAVQVANTPW
Trigger: CCATGGAGTGTTGGCCACCTGAACCGCTGTTTGGGGAGAGAAGCAGTTGGAGAATGCGTATTCTACAGTGACCGTTTCCCTAGAGTTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR GCA 90 bp AACGACGAAGAATATGGCAGCATGCTCCAGAAGGAGACATGGAAATaGTTGGCCATGATAAGGGTCTGGTCATCCATTGACTGTGAACCC +
Preference number: 1 (lower is better)
Translates to: NDEEYGSMLQKETWK*LAMIRVWSSIDCEP
Trigger: GGGTTCACAGTCAATGGATGACCAGACCCTTATCATGGCCAAGCATTTCCATGTCTCCTTCTGGAGCATGCTGCCATATTCTTCGTCGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR GCA 90 bp GCACTCAGTACTGTGGCCTGGGCAGTGGAATCATTCAATAAATTCTaGCCAGCAGGACCACAGGGTATAGCAGGACTTAGGTGTAGAATA +
Preference number: 1 (lower is better)
Translates to: ALSTVAWAVESFNKF*PAGPQGIAGLRCRI
Trigger: TATTCTACACCTAAGTCCTGCTATACCCTGTGGTCCTGCTGGGCAGAATTTATTGAATGATTCCACTGCCCAGGCCACAGTACTGAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR CCA 90 bp ATCACCCTAGCCCCTCTAGGTACCACAGCTGAGTTCTCAGTGCTTTaGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCC +
Preference number: 1 (lower is better)
Translates to: ITLAPLGTTAEFSVL*RKYVLWMNHPCHTS
Trigger: GGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACTGAGAACTCAGCTGTGGTACCTAGAGGGGCTAGGGTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CCA 90 bp ATGCTCTCTCTCAATCTCAGTGTCTGCAAAAAGCACTCAGTACTGTaGCCTGGGCAGTGGAATCATTCAATAAATTCTGCCCAGCAGGAC +
Preference number: 1 (lower is better)
Translates to: MLSLNLSVCKKHSVL*PGQWNHSINSAQQD
Trigger: GTCCTGCTGGGCAGAATTTATTGAATGATTCCACTGCCCAGGCCACAGTACTGAGTGCTTTTTGCAGACACTGAGATTGAGAGAGAGCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR TCA 90 bp CCACAGCTGAGTTCTCAGTGCTTTGGAGAAAGTATGTCTTGTGGATaGATCATCCCTGCCATACTTCCCCCTTCTTTACTTGGAAGCTAC +
Preference number: 1 (lower is better)
Translates to: PQLSSQCFGESMSCG*IIPAILPPSLLGSY
Trigger: GTAGCTTCCAAGTAAAGAAGGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACTGAGAACTCAGCTGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CCA 90 bp GGTACCACAGCTGAGTTCTCAGTGCTTTGGAGAAAGTATGTCTTGTaGATGAATCATCCCTGCCATACTTCCCCCTTCTTTACTTGGAAG +
Preference number: 1 (lower is better)
Translates to: GTTAEFSVLWRKYVL*MNHPCHTSPFFTWK
Trigger: CTTCCAAGTAAAGAAGGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACTGAGAACTCAGCTGTGGTACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CCA 90 bp AATAACAACGACGAAGAATATGGCAGCATGCTCCAGAAGGAGACATaGAAATGCTTGGCCATGATAAGGGTCTGGTCATCCATTGACTGT +
Preference number: 1 (lower is better)
Translates to: NNNDEEYGSMLQKET*KCLAMIRVWSSIDC
Trigger: ACAGTCAATGGATGACCAGACCCTTATCATGGCCAAGCATTTCCATGTCTCCTTCTGGAGCATGCTGCCATATTCTTCGTCGTTGTTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CCA 90 bp AACTTGTGTGTCTGTAGAAAAATCCCAGTTGCACGATTTTGGATATaGAAGCTCCACCTAGGCTGGATAGACTCTCTGAGGAGCAGTGTT +
Preference number: 1 (lower is better)
Translates to: NLCVCRKIPVARFWI*KLHLGWIDSLRSSV
Trigger: AACACTGCTCCTCAGAGAGTCTATCCAGCCTAGGTGGAGCTTCCATATCCAAAATCGTGCAACTGGGATTTTTCTACAGACACACAAGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CCA 90 bp ATAGCTAACTTGTGTGTCTGTAGAAAAATCCCAGTTGCACGATTTTaGATATGGAAGCTCCACCTAGGCTGGATAGACTCTCTGAGGAGC +
Preference number: 1 (lower is better)
Translates to: IANLCVCRKIPVARF*IWKLHLGWIDSLRS
Trigger: GCTCCTCAGAGAGTCTATCCAGCCTAGGTGGAGCTTCCATATCCAAAATCGTGCAACTGGGATTTTTCTACAGACACACAAGTTAGCTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CCA 90 bp AGGAGAAGCATAGCGAGTTATATTACAAGGCTCATTTCCAAAACCTaGATGTCATGCGAGCAGGGACGTCTAGGTATGTGTTACATCTTG +
Preference number: 1 (lower is better)
Translates to: RRSIASYITRLISKT*MSCEQGRLGMCYIL
Trigger: CAAGATGTAACACATACCTAGACGTCCCTGCTCGCATGACATCCAGGTTTTGGAAATGAGCCTTGTAATATAACTCGCTATGCTTCTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR GCA 90 bp GGCATGGAACCCTTGTATTGCAGCCTTAAAGAATTATGGGTTCACTaGAATATTTGTTATGTAAACTACAGCCGGAAGCCTAGCAGACCA +
Preference number: 1 (lower is better)
Translates to: GMEPLYCSLKELWVH*NICYVNYSRKPSRP
Trigger: TGGTCTGCTAGGCTTCCGGCTGTAGTTTACATAACAAATATTGCAGTGAACCCATAATTCTTTAAGGCTGCAATACAAGGGTTCCATGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR TCA 90 bp CTTCACAGATTGGGGGTACTTCTCTATATGTGTGCAGTTTTGTCCTaGATTATCCGGGTGATTCTTAGCTTTCCAGTCTACTTTCTAGAC +
Preference number: 1 (lower is better)
Translates to: LHRLGVLLYMCAVLS*IIRVILSFPVYFLD
Trigger: GTCTAGAAAGTAGACTGGAAAGCTAAGAATCACCCGGATAATTCAGGACAAAACTGCACACATATAGAGAAGTACCCCCAATCTGTGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR GCA 90 bp TTCTCAGTGCTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTaGCATACTTCCCCCTTCTTTACTTGGAAGCTACAATGGTCTAAA +
Preference number: 1 (lower is better)
Translates to: FSVLWRKYVLWMNHP*HTSPFFTWKLQWSK
Trigger: TTTAGACCATTGTAGCTTCCAAGTAAAGAAGGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACTGAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CCA 90 bp TTGAAACAGGGCATGGAACCCTTGTATTGCAGCCTTAAAGAATTATaGGTTCACTGCAATATTTGTTATGTAAACTACAGCCGGAAGCCT +
Preference number: 1 (lower is better)
Translates to: LKQGMEPLYCSLKEL*VHCNICYVNYSRKP
Trigger: AGGCTTCCGGCTGTAGTTTACATAACAAATATTGCAGTGAACCCATAATTCTTTAAGGCTGCAATACAAGGGTTCCATGCCCTGTTTCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR TCA 90 bp CTCAAGAAAGTCTCTTCTAACATAAAGGCAAATACATGTAGCTACTaGGCTATGACTGTCCTTTGTCACACTCTATGGAAAAACACCGGA +
Preference number: 1 (lower is better)
Translates to: LKKVSSNIKANTCSY*AMTVLCHTLWKNTG
Trigger: TCCGGTGTTTTTCCATAGAGTGTGACAAAGGACAGTCATAGCTCAGTAGCTACATGTATTTGCCTTTATGTTAGAAGAGACTTTCTTGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR TCA 90 bp TTAGGAAAACATTATGTATTTGTCAGAGACCAAGAGATTATTTTATaGAGGCACACCCATGCTGAGATTAGAAGGAGAAGCATAGCGAGT +
Preference number: 1 (lower is better)
Translates to: LGKHYVFVRDQEIIL*RHTHAEIRRRSIAS
Trigger: ACTCGCTATGCTTCTCCTTCTAATCTCAGCATGGGTGTGCCTTCATAAAATAATCTCTTGGTCTCTGACAAATACATAATGTTTTCCTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR TCA 90 bp GTCACACTCTATGGAAAAACACCGGACTCCACGAATTCGGAATCATaGCAACACTTAGAACTAATTATTTGGTTCATCTGTATTTTATAC +
Preference number: 1 (lower is better)
Translates to: VTLYGKTPDSTNSES*QHLELIIWFICILY
Trigger: GTATAAAATACAGATGAACCAAATAATTAGTTCTAAGTGTTGTCATGATTCCGAATTCGTGGAGTCCGGTGTTTTTCCATAGAGTGTGAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR CAA 90 bp AGCGATTCCACAGACAAAAGGCGTCACCCGCGTACAGACGGCCGATaGTATCCCACGCTGCTTCAAGCTAACTGCACCAGATTGGATCCA +
Preference number: 2 (lower is better)
Translates to: SDSTDKRRHPRTDGR*YPTLLQANCTRLDP
Trigger: TGGATCCAATCTGGTGCAGTTAGCTTGAAGCAGCGTGGGATACAATCGGCCGTCTGTACGCGGGTGACGCCTTTTGTCTGTGGAATCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR CAA 90 bp GACGGCCGATTGTATCCCACGCTGCTTCAAGCTAACTGCACCAGATaGGATCCAGCCATCAGCACTCCCAGAGACTCCTTAAAAGCCTTT +
Preference number: 2 (lower is better)
Translates to: DGRLYPTLLQANCTR*DPAISTPRDSLKAF
Trigger: AAAGGCTTTTAAGGAGTCTCTGGGAGTGCTGATGGCTGGATCCAATCTGGTGCAGTTAGCTTGAAGCAGCGTGGGATACAATCGGCCGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR CCA 90 bp GACGGAGAATCAGATGGAAATCTGCAGGGTTTCTGTCACAGTAACTTACTGATGCCACCTCATGTCTCTTaGGTGGCAGGGCTGTGGTCT +
Preference number: 2 (lower is better)
Translates to: DGESDGNLQGFCHSNLLMPPHVS*VAGLWS
Trigger: AGACCACAGCCCTGCCACCCAAGAGACATGAGGTGG...CATCAGTAAGTTACTGTGACAGAAACCCTGCAGATTTCCATCTGATTCTCCGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR TCA 90 bp CTGAGCACTCGCCACCTCATGTCTCTTGGGTGGCAGGGCTGTGGTCTATGCAAAAAAAGGAGAGGAGAATaGAAGTATTTACACAACCAG +
Preference number: 2 (lower is better)
Translates to: LSTRHLMSLGWQGCGLCKKRRGE*KYLHNQ
Trigger: CTGGTTGTGTAAATACTTTCATTCTCCTCTCCTTTT...TTTGCATAGACCACAGCCCTGCCACCCAAGAGACATGAGGTGGCGAGTGCTCAG
49% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR TCA 90 bp CTGAGCACTCGCCACCTCATGTCTCTTGGGTGGCAGGGCTGTGGTCTATGCAAAGTATGTGTTACATCTTaGAGAAATGATCTGAAGGCA +
Preference number: 2 (lower is better)
Translates to: LSTRHLMSLGWQGCGLCKVCVTS*RNDLKA
Trigger: TGCCTTCAGATCATTTCTTCAAGATGTAACACATAC...TTTGCATAGACCACAGCCCTGCCACCCAAGAGACATGAGGTGGCGAGTGCTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR TCA 90 bp CTGAGCACTCGCCACCTCATGTCTCTTGGGTGGCAGGGCTGTGGTCTATGCAAATTTTATCAAGAAAACTaGGATGCTGTGGGCAAAGTT +
Preference number: 2 (lower is better)
Translates to: LSTRHLMSLGWQGCGLCKFYQEN*DAVGKV
Trigger: AACTTTGCCCACAGCATCTCAGTTTTCTTGATAAAA...TTTGCATAGACCACAGCCCTGCCACCCAAGAGACATGAGGTGGCGAGTGCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR GCA 90 bp GTAGGTCTTTATTTAGGGTGTGCAGAAGGTCACTGTAGAAACCTAGGCGTGCTGAAAACCTGGATGTCATaGGAGCAGGGACGTCTAGGT +
Preference number: 2 (lower is better)
Translates to: VGLYLGCAEGHCRNLGVLKTWMS*EQGRLG
Trigger: ACCTAGACGTCCCTGCTCGCATGACATCCAGGTTTT...CAGCACGCCTAGGTTTCTACAGTGACCTTCTGCACACCCTAAATAAAGACCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR GCA 90 bp AAATTCTGCCCAGCAGGACCACAGGGTATAGCAGGACTTAGGTGTAGAATAAGACTGCTTCAAGCTAACTaGACCAGATTGGATCCAGCC +
Preference number: 2 (lower is better)
Translates to: KFCPAGPQGIAGLRCRIRLLQAN*TRLDPA
Trigger: GGCTGGATCCAATCTGGTGCAGTTAGCTTGAAGCAG...TCTTATTCTACACCTAAGTCCTGCTATACCCTGTGGTCCTGCTGGGCAGAATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR GCA 90 bp GTACCCTACACACCTTACACAGAGGAGGCATTTTTAACTCTAGGGAAACGGTCACTCTTGAACAGGCTGTaGTGTCCTGTGATGGGCTAT +
Preference number: 2 (lower is better)
Translates to: VPYTPYTEEAFLTLGKRSLLNRL*CPVMGY
Trigger: ATAGCCCATCACAGGACAGCACAGCCTGTTCAAGAG...TGACCGTTTCCCTAGAGTTAAAAATGCCTCCTCTGTGTAAGGTGTGTAGGGTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR GCA 90 bp GTAGGTCTTTATTTAGGGTGTGCAGAAGGTCACTGTAGAAACCTAGGCGTGCTGCAGGGCTGTGGTCTATaGAAAGAAGCTATGTTAGGG +
Preference number: 2 (lower is better)
Translates to: VGLYLGCAEGHCRNLGVLQGCGL*KEAMLG
Trigger: CCCTAACATAGCTTCTTTGCATAGACCACAGCCCTG...CAGCACGCCTAGGTTTCTACAGTGACCTTCTGCACACCCTAAATAAAGACCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR CAA 90 bp CTAGGTACCACAGCTGAGTTCTCAGTGCTTTGGAGAAAGTATGTCTaGTGGATGAATCATCCCTGCCATACTTCCCCCTTCTTTACTTGG +
Preference number: 2 (lower is better)
Translates to: LGTTAEFSVLWRKYV*WMNHPCHTSPFFTW
Trigger: CCAAGTAAAGAAGGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACTGAGAACTCAGCTGTGGTACCTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR-3UTR TCA 90 bp TGTTCATACTTCACAGATTGGGGGTACTTCTCTATATGTGTGCAGTTTTGTCCTGGCTGTGCTGTCCTGTaGTGGGCTATGTTTTCCCAC +
Preference number: 2 (lower is better)
Translates to: CSYFTDWGYFSICVQFCPGCAVL*WAMFSH
Trigger: GTGGGAAAACATAGCCCATCACAGGACAGCACAGCC...AGGACAAAACTGCACACATATAGAGAAGTACCCCCAATCTGTGAAGTATGAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR CCA 90 bp ATACCTCAGTTTACCTCACATGTACCCTACACACCTTACACAGAGGAGGCATTTCTAACTGCACCAGATTaGATCCAGCCATCAGCACTC +
Preference number: 2 (lower is better)
Translates to: IPQFTSHVPYTPYTEEAFLTAPD*IQPSAL
Trigger: GAGTGCTGATGGCTGGATCCAATCTGGTGCAGTTAG...AAATGCCTCCTCTGTGTAAGGTGTGTAGGGTACATGTGAGGTAAACTGAGGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR CCA 90 bp ACTCATAAATACTCATGGTTTCACTCTGTCCAGGCGCCTAAGGACTATGCTGCTCTCATTTCCAAAACCTaGATGTCATGCGAGCAGGGA +
Preference number: 2 (lower is better)
Translates to: THKYSWFHSVQAPKDYAALISKT*MSCEQG
Trigger: TCCCTGCTCGCATGACATCCAGGTTTTGGAAATGAG...AGCAGCATAGTCCTTAGGCGCCTGGACAGAGTGAAACCATGAGTATTTATGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR CCA 90 bp TGTGCAGAAGGTCACTGTAGAAACCTAGGCGTGCTGAAATTGGCAACTTCATCAATGATGCCCTCCTTCTaGTGTGTCCATTTGGTTGCA +
Preference number: 2 (lower is better)
Translates to: CAEGHCRNLGVLKLATSSMMPSF*CVHLVA
Trigger: TGCAACCAAATGGACACACCAGAAGGAGGGCATCAT...TGATGAAGTTGCCAATTTCAGCACGCCTAGGTTTCTACAGTGACCTTCTGCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR TCA 90 bp GTAGGTCTTTATTTAGGGTGTGCAGAAGGTCACTGTAGAAACCTAGGCGTGCTGCAAGAGATTATTTTATaGAGGCACACCCATGCTGAG +
Preference number: 2 (lower is better)
Translates to: VGLYLGCAEGHCRNLGVLQEIIL*RHTHAE
Trigger: CTCAGCATGGGTGTGCCTTCATAAAATAATCTCTTG...CAGCACGCCTAGGTTTCTACAGTGACCTTCTGCACACCCTAAATAAAGACCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR GCA 90 bp AGTGCTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCCCCAAGGAGACATGGAAATaGTTGGCCATGATAAGGGTC +
Preference number: 2 (lower is better)
Translates to: SALEKVCLVDESSLPYFPKETWK*LAMIRV
Trigger: GACCCTTATCATGGCCAAGCATTTCCATGTCTCCTT...GGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR-3UTR GCA 90 bp CTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCCCCCTTCAAGAATATGGCAGCATaGTCCAGAAGGAGACATGGA +
Preference number: 2 (lower is better)
Translates to: LWRKYVLWMNHPCHTSPFKNMAA*SRRRHG
Trigger: TCCATGTCTCCTTCTGGAGCATGCTGCCATATTCTT...GAAGGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR-3UTR CCA 90 bp CTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCCCCCTTCCTCCAGAAGGAGACATaGAAATGCTTGGCCATGATA +
Preference number: 2 (lower is better)
Translates to: LWRKYVLWMNHPCHTSPFLQKET*KCLAMI
Trigger: TATCATGGCCAAGCATTTCCATGTCTCCTTCTGGAG...GAAGGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR-3UTR TCA 90 bp TGTGCAGAAGGTCACTGTAGAAACCTAGGCGTGCTGAAATTGGCAACTTCATCACTAGCAGACCACGACTaGATGCTTTTGAAAAGTTGT +
Preference number: 2 (lower is better)
Translates to: CAEGHCRNLGVLKLATSSLADHD*MLLKSC
Trigger: ACAACTTTTCAAAAGCATTCAGTCGTGGTCTGCTAG...TGATGAAGTTGCCAATTTCAGCACGCCTAGGTTTCTACAGTGACCTTCTGCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR GCA 90 bp GTACCCTACACACCTTACACAGAGGAGGCATTTTTAACTCTAGGGAAACGGTCAAGGGCTGATCTGTTATaGATGGATGCCCAATATTTG +
Preference number: 2 (lower is better)
Translates to: VPYTPYTEEAFLTLGKRSRADLL*MDAQYL
Trigger: CAAATATTGGGCATCCATGCATAACAGATCAGCCCT...TGACCGTTTCCCTAGAGTTAAAAATGCCTCCTCTGTGTAAGGTGTGTAGGGTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR GCA 90 bp GTACCCTACACACCTTACACAGAGGAGGCATTTTTAACTCTAGGGAAACGGTCAGTGTGTCCATTTGGTTaGATCTCACATATGTCCTGT +
Preference number: 2 (lower is better)
Translates to: VPYTPYTEEAFLTLGKRSVCPFG*ISHMSC
Trigger: ACAGGACATATGTGAGATGCAACCAAATGGACACAC...TGACCGTTTCCCTAGAGTTAAAAATGCCTCCTCTGTGTAAGGTGTGTAGGGTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR CCA 90 bp GTAGGTCTTTATTTAGGGTGTGCAGAAGGTCACTGTAGAAACCTAGGCGTGCTGTGGCTTTCAAGGCTCTaGTCTTTTCTTTGGTCAAAA +
Preference number: 2 (lower is better)
Translates to: VGLYLGCAEGHCRNLGVLWLSRL*SFLWSK
Trigger: TTTTGACCAAAGAAAAGACCAGAGCCTTGAAAGCCA...CAGCACGCCTAGGTTTCTACAGTGACCTTCTGCACACCCTAAATAAAGACCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR TCA 90 bp ACTCATAAATACTCATGGTTTCACTCTGTCCAGGCGCCTAAGGACTATGCTGCTAATACATGTAGCTACTaGGCTATGACTGTCCTTTGT +
Preference number: 2 (lower is better)
Translates to: THKYSWFHSVQAPKDYAANTCSY*AMTVLC
Trigger: ACAAAGGACAGTCATAGCTCAGTAGCTACATGTATT...AGCAGCATAGTCCTTAGGCGCCTGGACAGAGTGAAACCATGAGTATTTATGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR TCA 90 bp GTAATGAATATTTTCTCCATGAACCCTCTTCTTGCCCTTAACTATCGAGGACCCGAATGGGAATGCTTCTaGATTTCAAGGAGAAGGACG +
Preference number: 2 (lower is better)
Translates to: VMNIFSMNPLLALNYRGPEWECF*ISRRRT
Trigger: CGTCCTTCTCCTTGAAATTCAGAAGCATTCCCATTC...GGGTCCTCGATAGTTAAGGGCAAGAAGAGGGTTCATGGAGAAAATATTCATTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
3UTR-3UTR GCA 90 bp GTAATGAATATTTTCTCCATGAACCCTCTTCTTGCCCTTAACTATCGAGGACCCCACCAAGTTCCTGGTTaGTTCTCTGGATTCACATAC +
Preference number: 2 (lower is better)
Translates to: VMNIFSMNPLLALNYRGPHQVPG*FSGFTY
Trigger: GTATGTGAATCCAGAGAAGCAACCAGGAACTTGGTG...GGGTCCTCGATAGTTAAGGGCAAGAAGAGGGTTCATGGAGAAAATATTCATTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
3UTR-3UTR CCA 90 bp GGGGGTACTTCTCTATATGTGTGCAGTTTTGTCCTGAATTATCCGGGTGATTCTACTCATAAATACTCATaGTTTCACTCTGTCCAGGCG +
Preference number: 2 (lower is better)
Translates to: GGTSLYVCSFVLNYPGDSTHKYS*FHSVQA
Trigger: CGCCTGGACAGAGTGAAACCATGAGTATTTATGAGT...AGAATCACCCGGATAATTCAGGACAAAACTGCACACATATAGAGAAGTACCCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR GCA 90 bp ATTAACATATCCCATGATGCCCTCCTTCTGGTGTGTCCATTTGGTTGCATCTCAAATCAGATGGAAATCTaGAGGGTTTCTGTCACAGTA +
Preference number: 2 (lower is better)
Translates to: INISHDALLLVCPFGCISNQMEI*RVSVTV
Trigger: TACTGTGACAGAAACCCTGCAGATTTCCATCTGATT...TGAGATGCAACCAAATGGACACACCAGAAGGAGGGCATCATGGGATATGTTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR GCA 90 bp TGTTCATACTTCACAGATTGGGGGTACTTCTCTATATGTGTGCAGTTTTGTCCTTCAAGAAAACTGAGATaGTGTGGGCAAAGTTCTCAG +
Preference number: 2 (lower is better)
Translates to: CSYFTDWGYFSICVQFCPSRKLR*CGQSSQ
Trigger: CTGAGAACTTTGCCCACAGCATCTCAGTTTTCTTGA...AGGACAAAACTGCACACATATAGAGAAGTACCCCCAATCTGTGAAGTATGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR CCA 90 bp CAGTCAGGACTGATAAAATGGAGTAATCAGACATTTCAGATGCCCGTCAATGTAATCAGACCTGAAAAATaGCTTTCAAGGCTCTGGTCT +
Preference number: 2 (lower is better)
Translates to: QSGLIKWSNQTFQMPVNVIRPEK*LSRLWS
Trigger: AGACCAGAGCCTTGAAAGCCATTTTTCAGGTCTGAT...TACATTGACGGGCATCTGAAATGTCTGATTACTCCATTTTATCAGTCCTGACTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR GCA 90 bp ATACCTCAGTTTACCTCACATGTACCCTACACACCTTACACAGAGGAGGCATTTGTAAGGAACATAAGATaGATTCCTATCAACCAAAGA +
Preference number: 2 (lower is better)
Translates to: IPQFTSHVPYTPYTEEAFVRNIR*IPINQR
Trigger: TCTTTGGTTGATAGGAATGCATCTTATGTTCCTTAC...AAATGCCTCCTCTGTGTAAGGTGTGTAGGGTACATGTGAGGTAAACTGAGGTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR GCA 90 bp GGGGGTACTTCTCTATATGTGTGCAGTTTTGTCCTGAATTATCCGGGTGATTCTACTTTATGTTTGAAATaGTCTCTCTCAATCTCAGTG +
Preference number: 2 (lower is better)
Translates to: GGTSLYVCSFVLNYPGDSTLCLK*SLSISV
Trigger: CACTGAGATTGAGAGAGAGCATTTCAAACATAAAGT...AGAATCACCCGGATAATTCAGGACAAAACTGCACACATATAGAGAAGTACCCCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR CCA 90 bp AGATGCACAATGATTTTGATTACTTATATGGCTGGGTCTCTTAATAAGGGGGTTATCATGCTTCAGATATaGTCACAGCTGCAGGGAACA +
Preference number: 2 (lower is better)
Translates to: RCTMILITYMAGSLNKGVIMLQI*SQLQGT
Trigger: TGTTCCCTGCAGCTGTGACCATATCTGAAGCATGAT...AACCCCCTTATTAAGAGACCCAGCCATATAAGTAATCAAAATCATTGTGCATCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR-3UTR GCA 90 bp AGATGCACAATGATTTTGATTACTTATATGGCTGGGTCTCTTAATAAGGGGGTTTCATGTCCACAGGGCTaGATTTGGGTCTCATTTATT +
Preference number: 2 (lower is better)
Translates to: RCTMILITYMAGSLNKGVSCPQG*IWVSFI
Trigger: AATAAATGAGACCCAAATGCAGCCCTGTGGACATGA...AACCCCCTTATTAAGAGACCCAGCCATATAAGTAATCAAAATCATTGTGCATCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR GCA 72 bp GTCACCCGCGTACAGACGGCCGATTGTATCCCACGCTaGTTCAAGCTAACTGCACCAGATTGGATCCAGCCA +
Preference number: 3 (lower is better)
Translates to: VTRVQTADCIPR*FKLTAPDWIQP
Trigger: TGGCTGGATCCAATCTGGTGCAGTTAGCTTGAAGCAGCGTGGGATACAATCGGCCGTCTGTACGCGGGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR GCA 72 bp GACGGCCGATTGTATCCCACGCTGCTTCAAGCTAACTaGACCAGATTGGATCCAGCCATCAGCACTCCCAGA +
Preference number: 3 (lower is better)
Translates to: DGRLYPTLLQAN*TRLDPAISTPR
Trigger: TCTGGGAGTGCTGATGGCTGGATCCAATCTGGTGCAGTTAGCTTGAAGCAGCGTGGGATACAATCGGCCGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR CCA 72 bp TCTCCAACTGCTTCTCTCCCCAAACAGCGGTTCAGGTaGCCAACACTCCATGGTAGCACCGCTATCTCTAAA +
Preference number: 3 (lower is better)
Translates to: SPTASLPKQRFR*PTLHGSTAISK
Trigger: TTTAGAGATAGCGGTGCTACCATGGAGTGTTGGCCACCTGAACCGCTGTTTGGGGAGAGAAGCAGTTGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR CAA 90 bp ATACCTCAGTTTACCTCACATGTACCCTACACACCTTACACAGAGGAGGCATTTGCCACCTCATGTCTCTaGGGTGGCAGGGCTGTGGTC +
Preference number: 3 (lower is better)
Translates to: IPQFTSHVPYTPYTEEAFATSCL*GGRAVV
Trigger: GACCACAGCCCTGCCACCCAAGAGACATGAGGTGGC...AAATGCCTCCTCTGTGTAAGGTGTGTAGGGTACATGTGAGGTAAACTGAGGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR GCA 72 bp ACTGTGGCCTGGGCAGTGGAATCATTCAATAAATTCTaGCCAGCAGGACCACAGGGTATAGCAGGACTTAGG +
Preference number: 3 (lower is better)
Translates to: TVAWAVESFNKF*PAGPQGIAGLR
Trigger: CCTAAGTCCTGCTATACCCTGTGGTCCTGCTGGGCAGAATTTATTGAATGATTCCACTGCCCAGGCCACAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR CCA 72 bp CACTCGCCACCTCATGTCTCTTGGGTGGCAGGGCTGTaGTCTATGCAAAGAAGCTATGTTAGGGTATCAACT +
Preference number: 3 (lower is better)
Translates to: HSPPHVSWVAGL*SMQRSYVRVST
Trigger: AGTTGATACCCTAACATAGCTTCTTTGCATAGACCACAGCCCTGCCACCCAAGAGACATGAGGTGGCGAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR CCA 72 bp CCTAATCTGAGCACTCGCCACCTCATGTCTCTTGGGTaGCAGGGCTGTGGTCTATGCAAAGAAGCTATGTTA +
Preference number: 3 (lower is better)
Translates to: PNLSTRHLMSLG*QGCGLCKEAML
Trigger: TAACATAGCTTCTTTGCATAGACCACAGCCCTGCCACCCAAGAGACATGAGGTGGCGAGTGCTCAGATTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR CCA 72 bp GACGAAGAATATGGCAGCATGCTCCAGAAGGAGACATaGAAATGCTTGGCCATGATAAGGGTCTGGTCATCC +
Preference number: 3 (lower is better)
Translates to: DEEYGSMLQKET*KCLAMIRVWSS
Trigger: GGATGACCAGACCCTTATCATGGCCAAGCATTTCCATGTCTCCTTCTGGAGCATGCTGCCATATTCTTCGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CCA 72 bp GCCCCTCTAGGTACCACAGCTGAGTTCTCAGTGCTTTaGAGAAAGTATGTCTTGTGGATGAATCATCCCTGC +
Preference number: 3 (lower is better)
Translates to: APLGTTAEFSVL*RKYVLWMNHPC
Trigger: GCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACTGAGAACTCAGCTGTGGTACCTAGAGGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CCA 72 bp GTCTGCAAAAAGCACTCAGTACTGTGGCCTGGGCAGTaGAATCATTCAATAAATTCTGCCCAGCAGGACCAC +
Preference number: 3 (lower is better)
Translates to: VCKKHSVLWPGQ*NHSINSAQQDH
Trigger: GTGGTCCTGCTGGGCAGAATTTATTGAATGATTCCACTGCCCAGGCCACAGTACTGAGTGCTTTTTGCAGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR TCA 72 bp GGGCAAGTTTGTGTGCTGCCTGCTGCTATAGTCATTTaGTCATGCTTCAGATATGGTCACAGCTGCAGGGAA +
Preference number: 3 (lower is better)
Translates to: GQVCVLPAAIVI*SCFRYGHSCRE
Trigger: TTCCCTGCAGCTGTGACCATATCTGAAGCATGATCAAATGACTATAGCAGCAGGCAGCACACAAACTTGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CCA 72 bp GTTGCACGATTTTGGATATGGAAGCTCCACCTAGGCTaGATAGACTCTCTGAGGAGCAGTGTTCTCCAACTA +
Preference number: 3 (lower is better)
Translates to: VARFWIWKLHLG*IDSLRSSVLQL
Trigger: TAGTTGGAGAACACTGCTCCTCAGAGAGTCTATCCAGCCTAGGTGGAGCTTCCATATCCAAAATCGTGCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CCA 72 bp TCACAGTTCCAGTCCTCATGTCCACAGGGCTGCATTTaGGTCTCATTTATTGAAGGATTAGGGCTGTGTAAG +
Preference number: 3 (lower is better)
Translates to: SQFQSSCPQGCI*VSFIEGLGLCK
Trigger: CTTACACAGCCCTAATCCTTCAATAAATGAGACCCAAATGCAGCCCTGTGGACATGAGGACTGGAACTGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR-3UTR CAA 90 bp ATACCTCAGTTTACCTCACATGTACCCTACACACCTTACACAGAGGAGGCATTTCAGGGCATGGAACCCTaGTATTGCAGCCTTAAAGAA +
Preference number: 3 (lower is better)
Translates to: IPQFTSHVPYTPYTEEAFQGMEP*YCSLKE
Trigger: TTCTTTAAGGCTGCAATACAAGGGTTCCATGCCCTG...AAATGCCTCCTCTGTGTAAGGTGTGTAGGGTACATGTGAGGTAAACTGAGGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR CCA 72 bp GCCTGCTGCTATAGTCATTTGATCATGCTTCAGATATaGTCACAGCTGCAGGGAACATGGTGCATAGTAGAT +
Preference number: 3 (lower is better)
Translates to: ACCYSHLIMLQI*SQLQGTWCIVD
Trigger: ATCTACTATGCACCATGTTCCCTGCAGCTGTGACCATATCTGAAGCATGATCAAATGACTATAGCAGCAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CCA 72 bp GCTGAGTTCTCAGTGCTTTGGAGAAAGTATGTCTTGTaGATGAATCATCCCTGCCATACTTCCCCCTTCTTT +
Preference number: 3 (lower is better)
Translates to: AEFSVLWRKYVL*MNHPCHTSPFF
Trigger: AAAGAAGGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACTGAGAACTCAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CCA 72 bp AAACTGAGATGCTGTGGGCAAAGTTCTCAGGCTCAATaGGTAATGACTAGACACAGCCTAATAGCTTCTTGG +
Preference number: 3 (lower is better)
Translates to: KLRCCGQSSQAQ*VMTRHSLIASW
Trigger: CCAAGAAGCTATTAGGCTGTGTCTAGTCATTACCCATTGAGCCTGAGAACTTTGCCCACAGCATCTCAGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR CCA 72 bp TTGTGTGTCTGTAGAAAAATCCCAGTTGCACGATTTTaGATATGGAAGCTCCACCTAGGCTGGATAGACTCT +
Preference number: 3 (lower is better)
Translates to: LCVCRKIPVARF*IWKLHLGWIDS
Trigger: AGAGTCTATCCAGCCTAGGTGGAGCTTCCATATCCAAAATCGTGCAACTGGGATTTTTCTACAGACACACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CCA 72 bp ATAGCGAGTTATATTACAAGGCTCATTTCCAAAACCTaGATGTCATGCGAGCAGGGACGTCTAGGTATGTGT +
Preference number: 3 (lower is better)
Translates to: IASYITRLISKT*MSCEQGRLGMC
Trigger: ACACATACCTAGACGTCCCTGCTCGCATGACATCCAGGTTTTGGAAATGAGCCTTGTAATATAACTCGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR CAA 90 bp TGTGCAGAAGGTCACTGTAGAAACCTAGGCGTGCTGAAATTGGCAACTTCATCAGGTTCACTGCAATATTaGTTATGTAAACTACAGCCG +
Preference number: 3 (lower is better)
Translates to: CAEGHCRNLGVLKLATSSGSLQY*LCKLQP
Trigger: CGGCTGTAGTTTACATAACAAATATTGCAGTGAACC...TGATGAAGTTGCCAATTTCAGCACGCCTAGGTTTCTACAGTGACCTTCTGCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR TCA 72 bp AGTTCTCAGTGCTTTGGAGAAAGTATGTCTTGTGGATaGATCATCCCTGCCATACTTCCCCCTTCTTTACTT +
Preference number: 3 (lower is better)
Translates to: SSQCFGESMSCG*IIPAILPPSLL
Trigger: AAGTAAAGAAGGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACTGAGAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR TCA 72 bp TTGGGGGTACTTCTCTATATGTGTGCAGTTTTGTCCTaGATTATCCGGGTGATTCTTAGCTTTCCAGTCTAC +
Preference number: 3 (lower is better)
Translates to: LGVLLYMCAVLS*IIRVILSFPVY
Trigger: GTAGACTGGAAAGCTAAGAATCACCCGGATAATTCAGGACAAAACTGCACACATATAGAGAAGTACCCCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR GCA 72 bp CTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTaGCATACTTCCCCCTTCTTTACTTGGAAGCTACAA +
Preference number: 3 (lower is better)
Translates to: LWRKYVLWMNHP*HTSPFFTWKLQ
Trigger: TTGTAGCTTCCAAGTAAAGAAGGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR GCA 72 bp TATATTACAAGGCTCATTTCCAAAACCTGGATGTCATaGGAGCAGGGACGTCTAGGTATGTGTTACATCTTG +
Preference number: 3 (lower is better)
Translates to: YITRLISKTWMS*EQGRLGMCYIL
Trigger: CAAGATGTAACACATACCTAGACGTCCCTGCTCGCATGACATCCAGGTTTTGGAAATGAGCCTTGTAATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR CAA 90 bp CAGTCAGGACTGATAAAATGGAGTAATCAGACATTTCAGATGCCCGTCAATGTAGCTCTGGTCTTTTCTTaGGTCAAAAGCAAGACCATG +
Preference number: 3 (lower is better)
Translates to: QSGLIKWSNQTFQMPVNVALVFS*VKSKTM
Trigger: CATGGTCTTGCTTTTGACCAAAGAAAAGACCAGAGC...TACATTGACGGGCATCTGAAATGTCTGATTACTCCATTTTATCAGTCCTGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR GCA 72 bp GAAGCTGTGAACCCCAAAGTGACTTTATGTTTGAAATaGTCTCTCTCAATCTCAGTGTCTGCAAAAAGCACT +
Preference number: 3 (lower is better)
Translates to: EAVNPKVTLCLK*SLSISVSAKST
Trigger: AGTGCTTTTTGCAGACACTGAGATTGAGAGAGAGCATTTCAAACATAAAGTCACTTTGGGGTTCACAGCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR-3UTR CAA 90 bp GGGGGTACTTCTCTATATGTGTGCAGTTTTGTCCTGAATTATCCGGGTGATTCTTCCTTGGGTGTAGTTTaGAGAGTAGGTCTTTATTTA +
Preference number: 3 (lower is better)
Translates to: GGTSLYVCSFVLNYPGDSSLGVV*RVGLYL
Trigger: TAAATAAAGACCTACTCTCAAAACTACACCCAAGGA...AGAATCACCCGGATAATTCAGGACAAAACTGCACACATATAGAGAAGTACCCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR TCA 72 bp GTCTCTTCTAACATAAAGGCAAATACATGTAGCTACTaGGCTATGACTGTCCTTTGTCACACTCTATGGAAA +
Preference number: 3 (lower is better)
Translates to: VSSNIKANTCSY*AMTVLCHTLWK
Trigger: TTTCCATAGAGTGTGACAAAGGACAGTCATAGCTCAGTAGCTACATGTATTTGCCTTTATGTTAGAAGAGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR CCA 72 bp GGCATGGAACCCTTGTATTGCAGCCTTAAAGAATTATaGGTTCACTGCAATATTTGTTATGTAAACTACAGC +
Preference number: 3 (lower is better)
Translates to: GMEPLYCSLKEL*VHCNICYVNYS
Trigger: GCTGTAGTTTACATAACAAATATTGCAGTGAACCCATAATTCTTTAAGGCTGCAATACAAGGGTTCCATGCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR TCA 72 bp TATGGAAAAACACCGGACTCCACGAATTCGGAATCATaGCAACACTTAGAACTAATTATTTGGTTCATCTGT +
Preference number: 3 (lower is better)
Translates to: YGKTPDSTNSES*QHLELIIWFIC
Trigger: ACAGATGAACCAAATAATTAGTTCTAAGTGTTGTCATGATTCCGAATTCGTGGAGTCCGGTGTTTTTCCATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR CCA 72 bp AATTGCAACAATCTTGTACAGTCAGGACTGATAAAATaGAGTAATCAGACATTTCAGATGCCCGTCAATGTA +
Preference number: 3 (lower is better)
Translates to: NCNNLVQSGLIK*SNQTFQMPVNV
Trigger: TACATTGACGGGCATCTGAAATGTCTGATTACTCCATTTTATCAGTCCTGACTGTACAAGATTGTTGCAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR GCA 72 bp GTTAAAACACATTTTGGAATTGTAAGGAACATAAGATaGATTCCTATCAACCAAAGACGGAGAATCAGATGG +
Preference number: 3 (lower is better)
Translates to: VKTHFGIVRNIR*IPINQRRRIRW
Trigger: CCATCTGATTCTCCGTCTTTGGTTGATAGGAATGCATCTTATGTTCCTTACAATTCCAAAATGTGTTTTAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR GCA 90 bp CATTCTCCAACTGCTTCTCTCCCCAAACAGCGGTTCAGGTGGCCAACACTCCATGGGAAGTCCACGCTCTaGCCGGCCGGGAGGCAAGAG +
Preference number: 4 (lower is better)
Translates to: HSPTASLPKQRFRWPTLHGKSTL*PAGRQE
Trigger: CTCTTGCCTCCCGGCCGGGCAGAGCGTGGACTTCCC...ATGGAGTGTTGGCCACCTGAACCGCTGTTTGGGGAGAGAAGCAGTTGGAGAATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR CCA 90 bp CATTCTCCAACTGCTTCTCTCCCCAAACAGCGGTTCAGGTGGCCAACACTCCATACCGCCGCCAGCCACTaGTTCGAGCAACAAGCGCCC +
Preference number: 4 (lower is better)
Translates to: HSPTASLPKQRFRWPTLHTAASH*FEQQAP
Trigger: GGGCGCTTGTTGCTCGAACCAGTGGCTGGCGGCGGT...ATGGAGTGTTGGCCACCTGAACCGCTGTTTGGGGAGAGAAGCAGTTGGAGAATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR CCA 90 bp GCCTGCTGCTATAGTCATTTGATCATGCTTCAGATATGGTCACAGCTGCAGGGAACCGCCGCCAGCCACTaGTTCGAGCAACAAGCGCCC +
Preference number: 4 (lower is better)
Translates to: ACCYSHLIMLQIWSQLQGTAASH*FEQQAP
Trigger: GGGCGCTTGTTGCTCGAACCAGTGGCTGGCGGCGGT...TCCCTGCAGCTGTGACCATATCTGAAGCATGATCAAATGACTATAGCAGCAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CAA 72 bp ACAGACAAAAGGCGTCACCCGCGTACAGACGGCCGATaGTATCCCACGCTGCTTCAAGCTAACTGCACCAGA +
Preference number: 4 (lower is better)
Translates to: TDKRRHPRTDGR*YPTLLQANCTR
Trigger: TCTGGTGCAGTTAGCTTGAAGCAGCGTGGGATACAATCGGCCGTCTGTACGCGGGTGACGCCTTTTGTCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR GCA 90 bp CTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCCCCCTTCCGGCGGCGGCACACCTaGACCCTCGCATCGTATCAG +
Preference number: 4 (lower is better)
Translates to: LWRKYVLWMNHPCHTSPFRRRHT*TLASYQ
Trigger: CTGATACGATGCGAGGGTGCAGGTGTGCCGCCGCCG...GAAGGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR GCA 90 bp TGTGCAGAAGGTCACTGTAGAAACCTAGGCGTGCTGAAATTGGCAACTTCATCACGGCGGCGGCACACCTaGACCCTCGCATCGTATCAG +
Preference number: 4 (lower is better)
Translates to: CAEGHCRNLGVLKLATSSRRRHT*TLASYQ
Trigger: CTGATACGATGCGAGGGTGCAGGTGTGCCGCCGCCG...TGATGAAGTTGCCAATTTCAGCACGCCTAGGTTTCTACAGTGACCTTCTGCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR GCA 90 bp GGGTATCAAGTCTCTGTTCCTAGACAGACATTACCAGAGATTCCACAGTCCTCACGGCGGCGGCACACCTaGACCCTCGCATCGTATCAG +
Preference number: 4 (lower is better)
Translates to: GYQVSVPRQTLPEIPQSSRRRHT*TLASYQ
Trigger: CTGATACGATGCGAGGGTGCAGGTGTGCCGCCGCCG...TGAGGACTGTGGAATCTCTGGTAATGTCTGTCTAGGAACAGAGACTTGATACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR CCA 90 bp GGGTATCAAGTCTCTGTTCCTAGACAGACATTACCAGAGATTCCACAGTCCTCAACCGCCGCCAGCCACTaGTTCGAGCAACAAGCGCCC +
Preference number: 4 (lower is better)
Translates to: GYQVSVPRQTLPEIPQSSTAASH*FEQQAP
Trigger: GGGCGCTTGTTGCTCGAACCAGTGGCTGGCGGCGGT...TGAGGACTGTGGAATCTCTGGTAATGTCTGTCTAGGAACAGAGACTTGATACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR TCA 90 bp GTACCCTACACACCTTACACAGAGGAGGCATTTTTAACTCTAGGGAAACGGTCACTGTACTTGGAGGGTTaGGGGGCAGGCTCGCGTTGG +
Preference number: 4 (lower is better)
Translates to: VPYTPYTEEAFLTLGKRSLYLEG*GAGSRW
Trigger: CCAACGCGAGCCTGCCCCTCAACCCTCCAAGTACAG...TGACCGTTTCCCTAGAGTTAAAAATGCCTCCTCTGTGTAAGGTGTGTAGGGTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR GCA 90 bp ATCAAGTCTCTGTTCCTAGACAGACATTACCAGAGATTCCACAGTCCTCATTTTGGGAAGTCCACGCTCTaGCCGGCCGGGAGGCAAGAG +
Preference number: 4 (lower is better)
Translates to: IKSLFLDRHYQRFHSPHFGKSTL*PAGRQE
Trigger: CTCTTGCCTCCCGGCCGGGCAGAGCGTGGACTTCCC...AAAATGAGGACTGTGGAATCTCTGGTAATGTCTGTCTAGGAACAGAGACTTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR CCA 90 bp GTAGGTCTTTATTTAGGGTGTGCAGAAGGTCACTGTAGAAACCTAGGCGTGCTGGGGGCAGGCTCGCGTTaGTTGTACCCAACTTGTTGG +
Preference number: 4 (lower is better)
Translates to: VGLYLGCAEGHCRNLGVLGAGSR*LYPTCW
Trigger: CCAACAAGTTGGGTACAACCAACGCGAGCCTGCCCC...CAGCACGCCTAGGTTTCTACAGTGACCTTCTGCACACCCTAAATAAAGACCTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR GCA 90 bp CATTCTCCAACTGCTTCTCTCCCCAAACAGCGGTTCAGGTGGCCAACACTCCATCGACACATCGTTTTCTaGACTGCATTCATACTCCCC +
Preference number: 4 (lower is better)
Translates to: HSPTASLPKQRFRWPTLHRHIVF*TAFILP
Trigger: GGGGAGTATGAATGCAGTGCAGAAAACGATGTGTCG...ATGGAGTGTTGGCCACCTGAACCGCTGTTTGGGGAGAGAAGCAGTTGGAGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
3UTR CAA 72 bp AATAGTGCAGGAGACTGCTGCTTTACCAGGGGTCTCTaGAACAGGCTGTGCTGTCCTGTGATGGGCTATGTT +
Preference number: 4 (lower is better)
Translates to: NSAGDCCFTRGL*NRLCCPVMGYV
Trigger: AACATAGCCCATCACAGGACAGCACAGCCTGTTCAAGAGACCCCTGGTAAAGCAGCAGTCTCCTGCACTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR TCA 90 bp CAGGGCTGCATTTGGGTCTCATTTATTGAAGGATTAGGGCTGTGTAAGACAACGTATGCCTCCAGGAAATaGCAGGCTCTGGCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: QGCIWVSFIEGLGLCKTTYASRK*QALASQ
Trigger: CTGGGAAGCCAGAGCCTGTCATTTCCTGGAGGCATA...CGTTGTCTTACACAGCCCTAATCCTTCAATAAATGAGACCCAAATGCAGCCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR TCA 90 bp ACTCATAAATACTCATGGTTTCACTCTGTCCAGGCGCCTAAGGACTATGCTGCTTATGCCTCCAGGAAATaGCAGGCTCTGGCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: THKYSWFHSVQAPKDYAAYASRK*QALASQ
Trigger: CTGGGAAGCCAGAGCCTGTCATTTCCTGGAGGCATA...AGCAGCATAGTCCTTAGGCGCCTGGACAGAGTGAAACCATGAGTATTTATGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR GCA 90 bp AGATGCACAATGATTTTGATTACTTATATGGCTGGGTCTCTTAATAAGGGGGTTGGGAAGTCCACGCTCTaGCCGGCCGGGAGGCAAGAG +
Preference number: 4 (lower is better)
Translates to: RCTMILITYMAGSLNKGVGKSTL*PAGRQE
Trigger: CTCTTGCCTCCCGGCCGGGCAGAGCGTGGACTTCCC...AACCCCCTTATTAAGAGACCCAGCCATATAAGTAATCAAAATCATTGTGCATCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR CCA 90 bp AGTGCTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCCCCGTCCGTGGTGTGTGTTaGGTCTGCACAGAACAGGTG +
Preference number: 4 (lower is better)
Translates to: SALEKVCLVDESSLPYFPVRGVC*VCTEQV
Trigger: CACCTGTTCTGTGCAGACCCAACACACACCACGGAC...GGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR TCA 90 bp GCTAACTGCACCAGATTGGATCCAGCCATCAGCACTCCCAGAGACTCCTTAAAAAGCAAAAATGATACTTaGCCTGTTGAGCCAGGCACC +
Preference number: 4 (lower is better)
Translates to: ANCTRLDPAISTPRDSLKSKNDT*PVEPGT
Trigger: GGTGCCTGGCTCAACAGGTCAAGTATCATTTTTGCT...TTTTAAGGAGTCTCTGGGAGTGCTGATGGCTGGATCCAATCTGGTGCAGTTAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR TCA 90 bp TTAACTATCGAGGACCCAGTGTTGGGTATCAAGTCTCTGTTCCTAGACAGACATTATGCCTCCAGGAAATaGCAGGCTCTGGCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: LTIEDPVLGIKSLFLDRHYASRK*QALASQ
Trigger: CTGGGAAGCCAGAGCCTGTCATTTCCTGGAGGCATA...ATGTCTGTCTAGGAACAGAGACTTGATACCCAACACTGGGTCCTCGATAGTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR TCA 90 bp AACTTGTGTGTCTGTAGAAAAATCCCAGTTGCACGATTTTGGATATGGAAGCTCGAATGGAACTCTGGTTaGGGGGCAGGCTCGCGTTGG +
Preference number: 4 (lower is better)
Translates to: NLCVCRKIPVARFWIWKLEWNSG*GAGSRW
Trigger: CCAACGCGAGCCTGCCCCTCAACCAGAGTTCCATTC...GAGCTTCCATATCCAAAATCGTGCAACTGGGATTTTTCTACAGACACACAAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR TCA 90 bp GAGGACCCAGTGTTGGGTATCAAGTCTCTGTTCCTAGACAGACATTACCAGAGACAGCATTGCCATGAGTaGGCCCAGCACATTTGTAGA +
Preference number: 4 (lower is better)
Translates to: EDPVLGIKSLFLDRHYQRQHCHE*AQHICR
Trigger: TCTACAAATGTGCTGGGCTCACTCATGGCAATGCTG...TCTCTGGTAATGTCTGTCTAGGAACAGAGACTTGATACCCAACACTGGGTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR GCA 90 bp CTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCCCCCTTCGCTGATGGGGAGATATaGCTCCAGGAAATGACAGGC +
Preference number: 4 (lower is better)
Translates to: LWRKYVLWMNHPCHTSPFADGEI*LQEMTG
Trigger: GCCTGTCATTTCCTGGAGGCATATCTCCCCATCAGC...GAAGGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR GCA 90 bp GTACCCTACACACCTTACACAGAGGAGGCATTTTTAACTCTAGGGAAACGGTCAGCTGATGGGGAGATATaGCTCCAGGAAATGACAGGC +
Preference number: 4 (lower is better)
Translates to: VPYTPYTEEAFLTLGKRSADGEI*LQEMTG
Trigger: GCCTGTCATTTCCTGGAGGCATATCTCCCCATCAGC...TGACCGTTTCCCTAGAGTTAAAAATGCCTCCTCTGTGTAAGGTGTGTAGGGTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR GCA 90 bp ACTCATAAATACTCATGGTTTCACTCTGTCCAGGCGCCTAAGGACTATGCTGCTTTGCCGAAGTGCTCCTaGGTCACATTGGTCACTGTG +
Preference number: 4 (lower is better)
Translates to: THKYSWFHSVQAPKDYAALPKCS*VTLVTV
Trigger: CACAGTGACCAATGTGACGCAGGAGCACTTCGGCAA...AGCAGCATAGTCCTTAGGCGCCTGGACAGAGTGAAACCATGAGTATTTATGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR CCA 90 bp ATCAAGAAAACTGAGATGCTGTGGGCAAAGTTCTCAGGCTCAATGGGTAATGACGTCCGTGGTGTGTGTTaGGTCTGCACAGAACAGGTG +
Preference number: 4 (lower is better)
Translates to: IKKTEMLWAKFSGSMGNDVRGVC*VCTEQV
Trigger: CACCTGTTCTGTGCAGACCCAACACACACCACGGAC...GTCATTACCCATTGAGCCTGAGAACTTTGCCCACAGCATCTCAGTTTTCTTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR CCA 90 bp GTTGATGTGATAACTAACCACCAAGTTCCTGGTTGCTTCTCTGGATTCACATACGGGGCAGGCTCGCGTTaGTTGTACCCAACTTGTTGG +
Preference number: 4 (lower is better)
Translates to: VDVITNHQVPGCFSGFTYGAGSR*LYPTCW
Trigger: CCAACAAGTTGGGTACAACCAACGCGAGCCTGCCCC...GTATGTGAATCCAGAGAAGCAACCAGGAACTTGGTGGTTAGTTATCACATCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
3UTR CAA 72 bp TGGGCAAGTTTGTGTGCTGCCTGCTGCTATAGTCATTaGATCATGCTTCAGATATGGTCACAGCTGCAGGGA +
Preference number: 4 (lower is better)
Translates to: WASLCAACCYSH*IMLQIWSQLQG
Trigger: TCCCTGCAGCTGTGACCATATCTGAAGCATGATCAAATGACTATAGCAGCAGGCAGCACACAAACTTGCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR TCA 90 bp ATTAACATATCCCATGATGCCCTCCTTCTGGTGTGTCCATTTGGTTGCATCTCACTTCCAAGTAACACCTaGGCACCGCTGTGTCACCTT +
Preference number: 4 (lower is better)
Translates to: INISHDALLLVCPFGCISLPSNT*APLCHL
Trigger: AAGGTGACACAGCGGTGCTCAGGTGTTACTTGGAAG...TGAGATGCAACCAAATGGACACACCAGAAGGAGGGCATCATGGGATATGTTAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR TCA 90 bp TTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCCCCCTTCTTGAGCCAGGCACCCTTTaGTGCTCCATCTTCCAAGTA +
Preference number: 4 (lower is better)
Translates to: LEKVCLVDESSLPYFPLLEPGTL*CSIFQV
Trigger: TACTTGGAAGATGGAGCATCAAAGGGTGCCTGGCTC...AAGAAGGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR TCA 90 bp GGGGGTACTTCTCTATATGTGTGCAGTTTTGTCCTGAATTATCCGGGTGATTCTGAGCCAGGCACCCTTTaGTGCTCCATCTTCCAAGTA +
Preference number: 4 (lower is better)
Translates to: GGTSLYVCSFVLNYPGDSEPGTL*CSIFQV
Trigger: TACTTGGAAGATGGAGCATCAAAGGGTGCCTGGCTC...AGAATCACCCGGATAATTCAGGACAAAACTGCACACATATAGAGAAGTACCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR TCA 90 bp GCCTGCTGCTATAGTCATTTGATCATGCTTCAGATATGGTCACAGCTGCAGGGAAGCAAAAATGATACTTaGCCTGTTGAGCCAGGCACC +
Preference number: 4 (lower is better)
Translates to: ACCYSHLIMLQIWSQLQGSKNDT*PVEPGT
Trigger: GGTGCCTGGCTCAACAGGTCAAGTATCATTTTTGCT...TCCCTGCAGCTGTGACCATATCTGAAGCATGATCAAATGACTATAGCAGCAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR TCA 90 bp AAGTTCCTGGTTGCTTCTCTGGATTCACATACAGGTTTTCAGGGGCCGCGGGTGCATTGGTTCCTTCATTaGTGGTCATGTCATTTGAGA +
Preference number: 4 (lower is better)
Translates to: KFLVASLDSHTGFQGPRVHWFLH*WSCHLR
Trigger: TCTCAAATGACATGACCATCAATGAAGGAACCAATG...CACCCGCGGCCCCTGAAAACCTGTATGTGAATCCAGAGAAGCAACCAGGAACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR GCA 90 bp AAATTCTGCCCAGCAGGACCACAGGGTATAGCAGGACTTAGGTGTAGAATAAGACCACACAAGTATAGTTaGCGAAGTGCTCCTGCGTCA +
Preference number: 4 (lower is better)
Translates to: KFCPAGPQGIAGLRCRIRPHKYS*RSAPAS
Trigger: TGACGCAGGAGCACTTCGGCAACTATACTTGTGTGG...TCTTATTCTACACCTAAGTCCTGCTATACCCTGTGGTCCTGCTGGGCAGAATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR TCA 90 bp GGGTATCAAGTCTCTGTTCCTAGACAGACATTACCAGAGATTCCACAGTCCTCAAGCAAAAATGATACTTaGCCTGTTGAGCCAGGCACC +
Preference number: 4 (lower is better)
Translates to: GYQVSVPRQTLPEIPQSSSKNDT*PVEPGT
Trigger: GGTGCCTGGCTCAACAGGTCAAGTATCATTTTTGCT...TGAGGACTGTGGAATCTCTGGTAATGTCTGTCTAGGAACAGAGACTTGATACCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR TCA 90 bp TGTGCAGAAGGTCACTGTAGAAACCTAGGCGTGCTGAAATTGGCAACTTCATCATTCCTTGTTGGCCATTaGAGAGCCTCTTCTCTCCTT +
Preference number: 4 (lower is better)
Translates to: CAEGHCRNLGVLKLATSSFLVGH*RASSLL
Trigger: AAGGAGAGAAGAGGCTCTTCAATGGCCAACAAGGAA...TGATGAAGTTGCCAATTTCAGCACGCCTAGGTTTCTACAGTGACCTTCTGCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR TCA 90 bp GGGTATCAAGTCTCTGTTCCTAGACAGACATTACCAGAGATTCCACAGTCCTCATTCCTTGTTGGCCATTaGAGAGCCTCTTCTCTCCTT +
Preference number: 4 (lower is better)
Translates to: GYQVSVPRQTLPEIPQSSFLVGH*RASSLL
Trigger: AAGGAGAGAAGAGGCTCTTCAATGGCCAACAAGGAA...TGAGGACTGTGGAATCTCTGGTAATGTCTGTCTAGGAACAGAGACTTGATACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR GCA 90 bp TTGTGTGTCTGTAGAAAAATCCCAGTTGCACGATTTTGGATATGGAAGCTCCACTTGCCGAAGTGCTCCTaGGTCACATTGGTCACTGTG +
Preference number: 4 (lower is better)
Translates to: LCVCRKIPVARFWIWKLHLPKCS*VTLVTV
Trigger: CACAGTGACCAATGTGACGCAGGAGCACTTCGGCAA...GTGGAGCTTCCATATCCAAAATCGTGCAACTGGGATTTTTCTACAGACACACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR GCA 90 bp GTAATGAATATTTTCTCCATGAACCCTCTTCTTGCCCTTAACTATCGAGGACCCTTGCCGAAGTGCTCCTaGGTCACATTGGTCACTGTG +
Preference number: 4 (lower is better)
Translates to: VMNIFSMNPLLALNYRGPLPKCS*VTLVTV
Trigger: CACAGTGACCAATGTGACGCAGGAGCACTTCGGCAA...GGGTCCTCGATAGTTAAGGGCAAGAAGAGGGTTCATGGAGAAAATATTCATTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
3UTR CAA 72 bp ACAGCTGAGTTCTCAGTGCTTTGGAGAAAGTATGTCTaGTGGATGAATCATCCCTGCCATACTTCCCCCTTC +
Preference number: 4 (lower is better)
Translates to: TAEFSVLWRKYV*WMNHPCHTSPF
Trigger: GAAGGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACTGAGAACTCAGCTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CAA 72 bp ACCCTCTTCTTGCCCTTAACTATCGAGGACCCAGTGTaGGGTATCAAGTCTCTGTTCCTAGACAGACATTAC +
Preference number: 4 (lower is better)
Translates to: TLFLPLTIEDPV*GIKSLFLDRHY
Trigger: GTAATGTCTGTCTAGGAACAGAGACTTGATACCCAACACTGGGTCCTCGATAGTTAAGGGCAAGAAGAGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR TCA 90 bp GGGTCTGGTCATCCATTGACTGTGAACCCAAATGCTATCATGGTTTTATTTTGTCTTCCAAGTAACACCTaGGCACCGCTGTGTCACCTT +
Preference number: 4 (lower is better)
Translates to: GSGHPLTVNPNAIMVLFCLPSNT*APLCHL
Trigger: AAGGTGACACAGCGGTGCTCAGGTGTTACTTGGAAG...ACAAAATAAAACCATGATAGCATTTGGGTTCACAGTCAATGGATGACCAGACCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR TCA 90 bp ATAACTAACCACCAAGTTCCTGGTTGCTTCTCTGGATTCACATACAGGTTTTCACTTCCAAGTAACACCTaGGCACCGCTGTGTCACCTT +
Preference number: 4 (lower is better)
Translates to: ITNHQVPGCFSGFTYRFSLPSNT*APLCHL
Trigger: AAGGTGACACAGCGGTGCTCAGGTGTTACTTGGAAG...TGAAAACCTGTATGTGAATCCAGAGAAGCAACCAGGAACTTGGTGGTTAGTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR TCA 90 bp AGTGCTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCCCCTTCAAATGGTTTTGCTaGTGGGGAGATATGCCTCCA +
Preference number: 4 (lower is better)
Translates to: SALEKVCLVDESSLPYFPFKWFC*WGDMPP
Trigger: TGGAGGCATATCTCCCCATCAGCAAAACCATTTGAA...GGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR GCA 90 bp GTTGATGTGATAACTAACCACCAAGTTCCTGGTTGCTTCTCTGGATTCACATACCCACACAAGTATAGTTaGCGAAGTGCTCCTGCGTCA +
Preference number: 4 (lower is better)
Translates to: VDVITNHQVPGCFSGFTYPHKYS*RSAPAS
Trigger: TGACGCAGGAGCACTTCGGCAACTATACTTGTGTGG...GTATGTGAATCCAGAGAAGCAACCAGGAACTTGGTGGTTAGTTATCACATCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR CCA 90 bp ATTAGAGAGTCATGCTTGGTAATGAATATTTTCTCCATGAACCCTCTTCTTGCCGTCCGTGGTGTGTGTTaGGTCTGCACAGAACAGGTG +
Preference number: 4 (lower is better)
Translates to: IRESCLVMNIFSMNPLLAVRGVC*VCTEQV
Trigger: CACCTGTTCTGTGCAGACCCAACACACACCACGGAC...GGCAAGAAGAGGGTTCATGGAGAAAATATTCATTACCAAGCATGACTCTCTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR CCA 90 bp AGATGCACAATGATTTTGATTACTTATATGGCTGGGTCTCTTAATAAGGGGGTTGGGGCAGGCTCGCGTTaGTTGTACCCAACTTGTTGG +
Preference number: 4 (lower is better)
Translates to: RCTMILITYMAGSLNKGVGAGSR*LYPTCW
Trigger: CCAACAAGTTGGGTACAACCAACGCGAGCCTGCCCC...AACCCCCTTATTAAGAGACCCAGCCATATAAGTAATCAAAATCATTGTGCATCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CAA 72 bp ACATATCCCATGATGCCCTCCTTCTGGTGTGTCCATTaGGTTGCATCTCACATATGTCCTGTAAGATGCAGT +
Preference number: 4 (lower is better)
Translates to: TYPMMPSFWCVH*VASHICPVRCS
Trigger: ACTGCATCTTACAGGACATATGTGAGATGCAACCAAATGGACACACCAGAAGGAGGGCATCATGGGATATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR TCA 90 bp GGGTCTGGTCATCCATTGACTGTGAACCCAAATGCTATCATGGTTTTATTTTGTACTTGCACAGTGAGATaGACCTGCATTGTCCGTGGT +
Preference number: 4 (lower is better)
Translates to: GSGHPLTVNPNAIMVLFCTCTVR*TCIVRG
Trigger: ACCACGGACAATGCAGGTTCATCTCACTGTGCAAGT...ACAAAATAAAACCATGATAGCATTTGGGTTCACAGTCAATGGATGACCAGACCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR TCA 90 bp TGTTCATACTTCACAGATTGGGGGTACTTCTCTATATGTGTGCAGTTTTGTCCTACTTGCACAGTGAGATaGACCTGCATTGTCCGTGGT +
Preference number: 4 (lower is better)
Translates to: CSYFTDWGYFSICVQFCPTCTVR*TCIVRG
Trigger: ACCACGGACAATGCAGGTTCATCTCACTGTGCAAGT...AGGACAAAACTGCACACATATAGAGAAGTACCCCCAATCTGTGAAGTATGAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR TCA 90 bp GACGGAGAATCAGATGGAAATCTGCAGGGTTTCTGTCACAGTAACTTACTGATGTTCAAATGGTTTTGCTaGTGGGGAGATATGCCTCCA +
Preference number: 4 (lower is better)
Translates to: DGESDGNLQGFCHSNLLMFKWFC*WGDMPP
Trigger: TGGAGGCATATCTCCCCATCAGCAAAACCATTTGAA...CATCAGTAAGTTACTGTGACAGAAACCCTGCAGATTTCCATCTGATTCTCCGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR TCA 90 bp TTGTGTGTCTGTAGAAAAATCCCAGTTGCACGATTTTGGATATGGAAGCTCCACTTCCTTGTTGGCCATTaGAGAGCCTCTTCTCTCCTT +
Preference number: 4 (lower is better)
Translates to: LCVCRKIPVARFWIWKLHFLVGH*RASSLL
Trigger: AAGGAGAGAAGAGGCTCTTCAATGGCCAACAAGGAA...GTGGAGCTTCCATATCCAAAATCGTGCAACTGGGATTTTTCTACAGACACACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR GCA 90 bp AACTTGTGTGTCTGTAGAAAAATCCCAGTTGCACGATTTTGGATATGGAAGCTCCCACACAAGTATAGTTaGCGAAGTGCTCCTGCGTCA +
Preference number: 4 (lower is better)
Translates to: NLCVCRKIPVARFWIWKLPHKYS*RSAPAS
Trigger: TGACGCAGGAGCACTTCGGCAACTATACTTGTGTGG...GAGCTTCCATATCCAAAATCGTGCAACTGGGATTTTTCTACAGACACACAAGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR TCA 90 bp ATTAGAGAGTCATGCTTGGTAATGAATATTTTCTCCATGAACCCTCTTCTTGCCACTTGCACAGTGAGATaGACCTGCATTGTCCGTGGT +
Preference number: 4 (lower is better)
Translates to: IRESCLVMNIFSMNPLLATCTVR*TCIVRG
Trigger: ACCACGGACAATGCAGGTTCATCTCACTGTGCAAGT...GGCAAGAAGAGGGTTCATGGAGAAAATATTCATTACCAAGCATGACTCTCTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR TCA 90 bp GTACCCTACACACCTTACACAGAGGAGGCATTTTTAACTCTAGGGAAACGGTCACCAGATTTAATTTCCTaGATTGTAGGCGCAAAGTTC +
Preference number: 4 (lower is better)
Translates to: VPYTPYTEEAFLTLGKRSPDLIS*IVGAKF
Trigger: GAACTTTGCGCCTACAATTCAGGAAATTAAATCTGG...TGACCGTTTCCCTAGAGTTAAAAATGCCTCCTCTGTGTAAGGTGTGTAGGGTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR GCA 90 bp GGGTCTGGTCATCCATTGACTGTGAACCCAAATGCTATCATGGTTTTATTTTGTCGACACATCGTTTTCTaGACTGCATTCATACTCCCC +
Preference number: 4 (lower is better)
Translates to: GSGHPLTVNPNAIMVLFCRHIVF*TAFILP
Trigger: GGGGAGTATGAATGCAGTGCAGAAAACGATGTGTCG...ACAAAATAAAACCATGATAGCATTTGGGTTCACAGTCAATGGATGACCAGACCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR GCA 90 bp ATCAAGTCTCTGTTCCTAGACAGACATTACCAGAGATTCCACAGTCCTCATTTTCGACACATCGTTTTCTaGACTGCATTCATACTCCCC +
Preference number: 4 (lower is better)
Translates to: IKSLFLDRHYQRFHSPHFRHIVF*TAFILP
Trigger: GGGGAGTATGAATGCAGTGCAGAAAACGATGTGTCG...AAAATGAGGACTGTGGAATCTCTGGTAATGTCTGTCTAGGAACAGAGACTTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR CCA 90 bp AGTGCTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCCCCATGATAATTCCTTGTTaGCCATTGAAGAGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: SALEKVCLVDESSLPYFPMIIPC*PLKSLF
Trigger: GAAGAGGCTCTTCAATGGCCAACAAGGAATTATCAT...GGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR CCA 90 bp ATTAGAGAGTCATGCTTGGTAATGAATATTTTCTCCATGAACCCTCTTCTTGCCCAGCACATTTGTAGATaGCACCAAAGGTTGAGGGGC +
Preference number: 4 (lower is better)
Translates to: IRESCLVMNIFSMNPLLAQHICR*HQRLRG
Trigger: GCCCCTCAACCTTTGGTGCCATCTACAAATGTGCTG...GGCAAGAAGAGGGTTCATGGAGAAAATATTCATTACCAAGCATGACTCTCTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR TCA 90 bp ATTAACATATCCCATGATGCCCTCCTTCTGGTGTGTCCATTTGGTTGCATCTCACATTGGTTCCTTCATTaGTGGTCATGTCATTTGAGA +
Preference number: 4 (lower is better)
Translates to: INISHDALLLVCPFGCISHWFLH*WSCHLR
Trigger: TCTCAAATGACATGACCATCAATGAAGGAACCAATG...TGAGATGCAACCAAATGGACACACCAGAAGGAGGGCATCATGGGATATGTTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR TCA 90 bp ATCAAGTCTCTGTTCCTAGACAGACATTACCAGAGATTCCACAGTCCTCATTTTTTCAAATGGTTTTGCTaGTGGGGAGATATGCCTCCA +
Preference number: 4 (lower is better)
Translates to: IKSLFLDRHYQRFHSPHFFKWFC*WGDMPP
Trigger: TGGAGGCATATCTCCCCATCAGCAAAACCATTTGAA...AAAATGAGGACTGTGGAATCTCTGGTAATGTCTGTCTAGGAACAGAGACTTGAT
42% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
3UTR CAA 72 bp ATAGTTCAGTTGCTCAGAGTGTTCATACTTCACAGATaGGGGGTACTTCTCTATATGTGTGCAGTTTTGTCC +
Preference number: 4 (lower is better)
Translates to: IVQLLRVFILHR*GVLLYMCAVLS
Trigger: GGACAAAACTGCACACATATAGAGAAGTACCCCCAATCTGTGAAGTATGAACACTCTGAGCAACTGAACTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR TCA 90 bp TTGTGTGTCTGTAGAAAAATCCCAGTTGCACGATTTTGGATATGGAAGCTCCACCATTGGTTCCTTCATTaGTGGTCATGTCATTTGAGA +
Preference number: 4 (lower is better)
Translates to: LCVCRKIPVARFWIWKLHHWFLH*WSCHLR
Trigger: TCTCAAATGACATGACCATCAATGAAGGAACCAATG...GTGGAGCTTCCATATCCAAAATCGTGCAACTGGGATTTTTCTACAGACACACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR TCA 90 bp GTAATGAATATTTTCTCCATGAACCCTCTTCTTGCCCTTAACTATCGAGGACCCCCAGATTTAATTTCCTaGATTGTAGGCGCAAAGTTC +
Preference number: 4 (lower is better)
Translates to: VMNIFSMNPLLALNYRGPPDLIS*IVGAKF
Trigger: GAACTTTGCGCCTACAATTCAGGAAATTAAATCTGG...GGGTCCTCGATAGTTAAGGGCAAGAAGAGGGTTCATGGAGAAAATATTCATTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR CCA 90 bp AACTTGTGTGTCTGTAGAAAAATCCCAGTTGCACGATTTTGGATATGGAAGCTCTATTCAATGTGGAAATaGAAACTCGAGGGTCCACTG +
Preference number: 4 (lower is better)
Translates to: NLCVCRKIPVARFWIWKLYSMWK*KLEGPL
Trigger: CAGTGGACCCTCGAGTTTCCATTTCCACATTGAATA...GAGCTTCCATATCCAAAATCGTGCAACTGGGATTTTTCTACAGACACACAAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR CCA 90 bp TGTTCATACTTCACAGATTGGGGGTACTTCTCTATATGTGTGCAGTTTTGTCCTTATTCAATGTGGAAATaGAAACTCGAGGGTCCACTG +
Preference number: 4 (lower is better)
Translates to: CSYFTDWGYFSICVQFCPYSMWK*KLEGPL
Trigger: CAGTGGACCCTCGAGTTTCCATTTCCACATTGAATA...AGGACAAAACTGCACACATATAGAGAAGTACCCCCAATCTGTGAAGTATGAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR CCA 90 bp GTAATGAATATTTTCTCCATGAACCCTCTTCTTGCCCTTAACTATCGAGGACCCATGATAATTCCTTGTTaGCCATTGAAGAGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: VMNIFSMNPLLALNYRGPMIIPC*PLKSLF
Trigger: GAAGAGGCTCTTCAATGGCCAACAAGGAATTATCAT...GGGTCCTCGATAGTTAAGGGCAAGAAGAGGGTTCATGGAGAAAATATTCATTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR TCA 90 bp GGGTCTGGTCATCCATTGACTGTGAACCCAAATGCTATCATGGTTTTATTTTGTCCAGATTTAATTTCCTaGATTGTAGGCGCAAAGTTC +
Preference number: 4 (lower is better)
Translates to: GSGHPLTVNPNAIMVLFCPDLIS*IVGAKF
Trigger: GAACTTTGCGCCTACAATTCAGGAAATTAAATCTGG...ACAAAATAAAACCATGATAGCATTTGGGTTCACAGTCAATGGATGACCAGACCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR TCA 90 bp GGGTCTGGTCATCCATTGACTGTGAACCCAAATGCTATCATGGTTTTATTTTGTAGGAAACTTTCAACATaGAGAAAACTTGCCAGGGAA +
Preference number: 4 (lower is better)
Translates to: GSGHPLTVNPNAIMVLFCRKLST*RKLARE
Trigger: TTCCCTGGCAAGTTTTCTTCATGTTGAAAGTTTCCT...ACAAAATAAAACCATGATAGCATTTGGGTTCACAGTCAATGGATGACCAGACCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR CCA 90 bp TGTTCATACTTCACAGATTGGGGGTACTTCTCTATATGTGTGCAGTTTTGTCCTATGATAATTCCTTGTTaGCCATTGAAGAGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: CSYFTDWGYFSICVQFCPMIIPC*PLKSLF
Trigger: GAAGAGGCTCTTCAATGGCCAACAAGGAATTATCAT...AGGACAAAACTGCACACATATAGAGAAGTACCCCCAATCTGTGAAGTATGAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR GCA 90 bp AGATGCACAATGATTTTGATTACTTATATGGCTGGGTCTCTTAATAAGGGGGTTAACATGAAGAAAACTTaGCAGGGAATGGAACTCTGG +
Preference number: 4 (lower is better)
Translates to: RCTMILITYMAGSLNKGVNMKKT*QGMELW
Trigger: CCAGAGTTCCATTCCCTGGCAAGTTTTCTTCATGTT...AACCCCCTTATTAAGAGACCCAGCCATATAAGTAATCAAAATCATTGTGCATCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CAA 72 bp GTAAAGAAGGAGTTTGGTTACAGATGCACAATGATTTaGATTACTTATATGGCTGGGTCTCTTAATAAGGGG +
Preference number: 4 (lower is better)
Translates to: VKKEFGYRCTMI*ITYMAGSLNKG
Trigger: CCCCTTATTAAGAGACCCAGCCATATAAGTAATCAAAATCATTGTGCATCTGTAACCAAACTCCTTCTTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
3UTR CAA 72 bp TTTGTAGAAGAGGAGTTTGTGATTAGAGAGTCATGCTaGGTAATGAATATTTTCTCCATGAACCCTCTTCTT +
Preference number: 4 (lower is better)
Translates to: FVEEEFVIRESC*VMNIFSMNPLL
Trigger: AAGAAGAGGGTTCATGGAGAAAATATTCATTACCAAGCATGACTCTCTAATCACAAACTCCTCTTCTACAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS GCA 90 bp CTCACCAGCATGTTGTCCACGGCCGCCCAAGGGAAGTCCACGCTCTaGCCGGCCGGGAGGCAAGAGCACAGGCTCAGAAGCACCGCCGCC +
Preference number: 5 (lower is better)
Translates to: LTSMLSTAAQGKSTL*PAGRQEHRLRSTAA
Trigger: GGCGGCGGTGCTTCTGAGCCTGTGCTCTTGCCTCCCGGCCGGGCAGAGCGTGGACTTCCCTTGGGCGGCCGTGGACAACATGCTGGTGAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
ENSMUST00000175773.2
CDS GCA 90 bp CCTCTTCTCTCCTTTGTACCACTCGAAGGCCGGCGGCGGCACACCTaGACCCTCGCATCGTATCAGTCCACTGCGTCCAGGGGTCACAGT +
Preference number: 5 (lower is better)
Translates to: PLLSFVPLEGRRRHT*TLASYQSTASRGHS
Trigger: ACTGTGACCCCTGGACGCAGTGGACTGATACGATGCGAGGGTGCAGGTGTGCCGCCGCCGGCCTTCGAGTGGTACAAAGGAGAGAAGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
CDS-3UTR CAA 90 bp CTGAGCACTCGCCACCTCATGTCTCTTGGGTGGCAGGGCTGTGGTCTATGCAAAAGCCTCTTCTCTCCTTaGTACCACTCGAAGGCCGGC +
Preference number: 5 (lower is better)
Translates to: LSTRHLMSLGWQGCGLCKSLFSP*YHSKAG
Trigger: GCCGGCCTTCGAGTGGTACAAAGGAGAGAAGAGGCT...TTTGCATAGACCACAGCCCTGCCACCCAAGAGACATGAGGTGGCGAGTGCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS TCA 90 bp ATTGCCATGAGTGAGCCCAGCACATTTGTAGATGGCACCAAAGGTTaGGGGGCAGGCTCGCGTTGGTTGTACCCAACTTGTTGGCAGCCA +
Preference number: 5 (lower is better)
Translates to: IAMSEPSTFVDGTKG*GAGSRWLYPTCWQP
Trigger: TGGCTGCCAACAAGTTGGGTACAACCAACGCGAGCCTGCCCCTCAACCTTTGGTGCCATCTACAAATGTGCTGGGCTCACTCATGGCAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR CAA 90 bp GTGCTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCCCCCAGCCTCTTCTCTCCTTaGTACCACTCGAAGGCCGGC +
Preference number: 5 (lower is better)
Translates to: VLWRKYVLWMNHPCHTSPSLFSP*YHSKAG
Trigger: GCCGGCCTTCGAGTGGTACAAAGGAGAGAAGAGGCT...GGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR CAA 90 bp GTAGGTCTTTATTTAGGGTGTGCAGAAGGTCACTGTAGAAACCTAGGCGTGCTGAGGGGCAGGCTCGCGTaGGTTGTACCCAACTTGTTG +
Preference number: 5 (lower is better)
Translates to: VGLYLGCAEGHCRNLGVLRGRLA*VVPNLL
Trigger: CAACAAGTTGGGTACAACCAACGCGAGCCTGCCCCT...CAGCACGCCTAGGTTTCTACAGTGACCTTCTGCACACCCTAAATAAAGACCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR CAA 90 bp ATACCTCAGTTTACCTCACATGTACCCTACACACCTTACACAGAGGAGGCATTTGCTGTACTTGGAGGGTaGAGGGGCAGGCTCGCGTTG +
Preference number: 5 (lower is better)
Translates to: IPQFTSHVPYTPYTEEAFAVLGG*RGRLAL
Trigger: CAACGCGAGCCTGCCCCTCAACCCTCCAAGTACAGC...AAATGCCTCCTCTGTGTAAGGTGTGTAGGGTACATGTGAGGTAAACTGAGGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR CAA 90 bp GGGTATCAAGTCTCTGTTCCTAGACAGACATTACCAGAGATTCCACAGTCCTCAAGCCTCTTCTCTCCTTaGTACCACTCGAAGGCCGGC +
Preference number: 5 (lower is better)
Translates to: GYQVSVPRQTLPEIPQSSSLFSP*YHSKAG
Trigger: GCCGGCCTTCGAGTGGTACAAAGGAGAGAAGAGGCT...TGAGGACTGTGGAATCTCTGGTAATGTCTGTCTAGGAACAGAGACTTGATACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR CAA 90 bp CATTCTCCAACTGCTTCTCTCCCCAAACAGCGGTTCAGGTGGCCAACACTCCATTTGGTTGTACCCAACTaGTTGGCAGCCACACAAGTA +
Preference number: 5 (lower is better)
Translates to: HSPTASLPKQRFRWPTLHLVVPN*LAATQV
Trigger: TACTTGTGTGGCTGCCAACAAGTTGGGTACAACCAA...ATGGAGTGTTGGCCACCTGAACCGCTGTTTGGGGAGAGAAGCAGTTGGAGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR CAA 90 bp AGTGCTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCCCCGCAGGCTCGCGTTGGTaGTACCCAACTTGTTGGCAG +
Preference number: 5 (lower is better)
Translates to: SALEKVCLVDESSLPYFPAGSRW*YPTCWQ
Trigger: CTGCCAACAAGTTGGGTACAACCAACGCGAGCCTGC...GGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR CAA 90 bp ACCCTGCTAGAAAGCCAGAATGGGAATGCTTCTGAATTTCAAGGAGAAGGACGAAGGGGCAGGCTCGCGTaGGTTGTACCCAACTTGTTG +
Preference number: 5 (lower is better)
Translates to: TLLESQNGNASEFQGEGRRGRLA*VVPNLL
Trigger: CAACAAGTTGGGTACAACCAACGCGAGCCTGCCCCT...TCGTCCTTCTCCTTGAAATTCAGAAGCATTCCCATTCTGGCTTTCTAGCAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR CAA 90 bp CTGAGCACTCGCCACCTCATGTCTCTTGGGTGGCAGGGCTGTGGTCTATGCAAAACATTGGTTCCTTCATaGATGGTCATGTCATTTGAG +
Preference number: 5 (lower is better)
Translates to: LSTRHLMSLGWQGCGLCKTLVPS*MVMSFE
Trigger: CTCAAATGACATGACCATCAATGAAGGAACCAATGT...TTTGCATAGACCACAGCCCTGCCACCCAAGAGACATGAGGTGGCGAGTGCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS CCA 90 bp AAGGAAACTTTCAACATGAAGAAAACTTGCCAGGGAATGGAACTCTaGTTGAGGGGCAGGCTCGCGTTGGTTGTACCCAACTTGTTGGCA +
Preference number: 5 (lower is better)
Translates to: KETFNMKKTCQGMEL*LRGRLALVVPNLLA
Trigger: TGCCAACAAGTTGGGTACAACCAACGCGAGCCTGCCCCTCAACCAGAGTTCCATTCCCTGGCAAGTTTTCTTCATGTTGAAAGTTTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR CAA 90 bp ATCAAGTCTCTGTTCCTAGACAGACATTACCAGAGATTCCACAGTCCTCATTTTAGATGGCACCAAAGGTaGAGGGGCAGGCTCGCGTTG +
Preference number: 5 (lower is better)
Translates to: IKSLFLDRHYQRFHSPHFRWHQR*RGRLAL
Trigger: CAACGCGAGCCTGCCCCTCAACCTTTGGTGCCATCT...AAAATGAGGACTGTGGAATCTCTGGTAATGTCTGTCTAGGAACAGAGACTTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS TCA 90 bp ATCAGTCCACTGCGTCCAGGGGTCACAGTGCCAGATTTAATTTCCTaGATTGTAGGCGCAAAGTTCACGATCACTCTCACTTTCTTCACG +
Preference number: 5 (lower is better)
Translates to: ISPLRPGVTVPDLIS*IVGAKFTITLTFFT
Trigger: CGTGAAGAAAGTGAGAGTGATCGTGAACTTTGCGCCTACAATTCAGGAAATTAAATCTGGCACTGTGACCCCTGGACGCAGTGGACTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
CDS CCA 90 bp AATTGTAGGCGCAAAGTTCACGATCACTCTCACTTTCTTCACGTCTaGGAACGACACATCGTTTTCTGCACTGCATTCATACTCCCCAGC +
Preference number: 5 (lower is better)
Translates to: NCRRKVHDHSHFLHV*ERHIVFCTAFILPS
Trigger: GCTGGGGAGTATGAATGCAGTGCAGAAAACGATGTGTCGTTCCCAGACGTGAAGAAAGTGAGAGTGATCGTGAACTTTGCGCCTACAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
CDS-3UTR CAA 90 bp GCCTGCTGCTATAGTCATTTGATCATGCTTCAGATATGGTCACAGCTGCAGGGAATGATACTTGACCTGTaGAGCCAGGCACCCTTTGAT +
Preference number: 5 (lower is better)
Translates to: ACCYSHLIMLQIWSQLQGMILDL*SQAPFD
Trigger: ATCAAAGGGTGCCTGGCTCAACAGGTCAAGTATCAT...TCCCTGCAGCTGTGACCATATCTGAAGCATGATCAAATGACTATAGCAGCAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR CAA 90 bp TGTTCATACTTCACAGATTGGGGGTACTTCTCTATATGTGTGCAGTTTTGTCCTGCAGGCTCGCGTTGGTaGTACCCAACTTGTTGGCAG +
Preference number: 5 (lower is better)
Translates to: CSYFTDWGYFSICVQFCPAGSRW*YPTCWQ
Trigger: CTGCCAACAAGTTGGGTACAACCAACGCGAGCCTGC...AGGACAAAACTGCACACATATAGAGAAGTACCCCCAATCTGTGAAGTATGAACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR CAA 90 bp ATCAAGTCTCTGTTCCTAGACAGACATTACCAGAGATTCCACAGTCCTCATTTTGCAGGCTCGCGTTGGTaGTACCCAACTTGTTGGCAG +
Preference number: 5 (lower is better)
Translates to: IKSLFLDRHYQRFHSPHFAGSRW*YPTCWQ
Trigger: CTGCCAACAAGTTGGGTACAACCAACGCGAGCCTGC...AAAATGAGGACTGTGGAATCTCTGGTAATGTCTGTCTAGGAACAGAGACTTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR CAA 90 bp GGGTCTGGTCATCCATTGACTGTGAACCCAAATGCTATCATGGTTTTATTTTGTAGGGGCAGGCTCGCGTaGGTTGTACCCAACTTGTTG +
Preference number: 5 (lower is better)
Translates to: GSGHPLTVNPNAIMVLFCRGRLA*VVPNLL
Trigger: CAACAAGTTGGGTACAACCAACGCGAGCCTGCCCCT...ACAAAATAAAACCATGATAGCATTTGGGTTCACAGTCAATGGATGACCAGACCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR CAA 90 bp CTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCCCCCTTCTTGGTTGTACCCAACTaGTTGGCAGCCACACAAGTA +
Preference number: 5 (lower is better)
Translates to: LWRKYVLWMNHPCHTSPFLVVPN*LAATQV
Trigger: TACTTGTGTGGCTGCCAACAAGTTGGGTACAACCAA...GAAGGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR CAA 90 bp GTGCTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCCCCCCATTTTCAAATGGTTTaGCTGATGGGGAGATATGCC +
Preference number: 5 (lower is better)
Translates to: VLWRKYVLWMNHPCHTSPHFQMV*LMGRYA
Trigger: GGCATATCTCCCCATCAGCAAAACCATTTGAAAATG...GGGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCAC
46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR CAA 90 bp GTAGGTCTTTATTTAGGGTGTGCAGAAGGTCACTGTAGAAACCTAGGCGTGCTGCATTTTCAAATGGTTTaGCTGATGGGGAGATATGCC +
Preference number: 5 (lower is better)
Translates to: VGLYLGCAEGHCRNLGVLHFQMV*LMGRYA
Trigger: GGCATATCTCCCCATCAGCAAAACCATTTGAAAATG...CAGCACGCCTAGGTTTCTACAGTGACCTTCTGCACACCCTAAATAAAGACCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR CAA 90 bp GCTAACTGCACCAGATTGGATCCAGCCATCAGCACTCCCAGAGACTCCTTAAAAAATGATAATTCCTTGTaGGCCATTGAAGAGCCTCTT +
Preference number: 5 (lower is better)
Translates to: ANCTRLDPAISTPRDSLKNDNSL*AIEEPL
Trigger: AAGAGGCTCTTCAATGGCCAACAAGGAATTATCATT...TTTTAAGGAGTCTCTGGGAGTGCTGATGGCTGGATCCAATCTGGTGCAGTTAGC
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR CAA 90 bp GAGGACCCAGTGTTGGGTATCAAGTCTCTGTTCCTAGACAGACATTACCAGAGACTGAATGATAATTCCTaGTTGGCCATTGAAGAGCCT +
Preference number: 5 (lower is better)
Translates to: EDPVLGIKSLFLDRHYQRLNDNS*LAIEEP
Trigger: AGGCTCTTCAATGGCCAACAAGGAATTATCATTCAG...TCTCTGGTAATGTCTGTCTAGGAACAGAGACTTGATACCCAACACTGGGTCCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR CAA 90 bp ATCAAGAAAACTGAGATGCTGTGGGCAAAGTTCTCAGGCTCAATGGGTAATGACCAAGTAAGGGTGACATaGGTTCCTTCATTGATGGTC +
Preference number: 5 (lower is better)
Translates to: IKKTEMLWAKFSGSMGNDQVRVT*VPSLMV
Trigger: GACCATCAATGAAGGAACCAATGTCACCCTTACTTG...GTCATTACCCATTGAGCCTGAGAACTTTGCCCACAGCATCTCAGTTTTCTTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR CAA 90 bp TTAACTATCGAGGACCCAGTGTTGGGTATCAAGTCTCTGTTCCTAGACAGACATCAAGTAAGGGTGACATaGGTTCCTTCATTGATGGTC +
Preference number: 5 (lower is better)
Translates to: LTIEDPVLGIKSLFLDRHQVRVT*VPSLMV
Trigger: GACCATCAATGAAGGAACCAATGTCACCCTTACTTG...ATGTCTGTCTAGGAACAGAGACTTGATACCCAACACTGGGTCCTCGATAGTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS TCA 90 bp TGCGTCACATTGGTCACTGTGAGGATGGATCTTGTGCTAAAATTCTaGATGATAATTCCTTGTTGGCCATTGAAGAGCCTCTTCTCTCCT +
Preference number: 5 (lower is better)
Translates to: CVTLVTVRMDLVLKF*MIIPCWPLKSLFSP
Trigger: AGGAGAGAAGAGGCTCTTCAATGGCCAACAAGGAATTATCATTCAGAATTTTAGCACAAGATCCATCCTCACAGTGACCAATGTGACGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
CDS-3UTR CAA 90 bp CAGTCAGGACTGATAAAATGGAGTAATCAGACATTTCAGATGCCCGTCAATGTAATGATACTTGACCTGTaGAGCCAGGCACCCTTTGAT +
Preference number: 5 (lower is better)
Translates to: QSGLIKWSNQTFQMPVNVMILDL*SQAPFD
Trigger: ATCAAAGGGTGCCTGGCTCAACAGGTCAAGTATCAT...TACATTGACGGGCATCTGAAATGTCTGATTACTCCATTTTATCAGTCCTGACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR CAA 90 bp AGTGCTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCCCCACATTGGTTCCTTCATaGATGGTCATGTCATTTGAG +
Preference number: 5 (lower is better)
Translates to: SALEKVCLVDESSLPYFPTLVPS*MVMSFE
Trigger: CTCAAATGACATGACCATCAATGAAGGAACCAATGT...GGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR CAA 90 bp TTAACTATCGAGGACCCAGTGTTGGGTATCAAGTCTCTGTTCCTAGACAGACATCATTTTCAAATGGTTTaGCTGATGGGGAGATATGCC +
Preference number: 5 (lower is better)
Translates to: LTIEDPVLGIKSLFLDRHHFQMV*LMGRYA
Trigger: GGCATATCTCCCCATCAGCAAAACCATTTGAAAATG...ATGTCTGTCTAGGAACAGAGACTTGATACCCAACACTGGGTCCTCGATAGTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR CAA 90 bp AGTGCTTTGGAGAAAGTATGTCTTGTGGATGAATCATCCCTGCCATACTTCCCCAATGATAATTCCTTGTaGGCCATTGAAGAGCCTCTT +
Preference number: 5 (lower is better)
Translates to: SALEKVCLVDESSLPYFPNDNSL*AIEEPL
Trigger: AAGAGGCTCTTCAATGGCCAACAAGGAATTATCATT...GGGGAAGTATGGCAGGGATGATTCATCCACAAGACATACTTTCTCCAAAGCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR CAA 90 bp GGGGGTACTTCTCTATATGTGTGCAGTTTTGTCCTGAATTATCCGGGTGATTCTCTGAATGATAATTCCTaGTTGGCCATTGAAGAGCCT +
Preference number: 5 (lower is better)
Translates to: GGTSLYVCSFVLNYPGDSLNDNS*LAIEEP
Trigger: AGGCTCTTCAATGGCCAACAAGGAATTATCATTCAG...AGAATCACCCGGATAATTCAGGACAAAACTGCACACATATAGAGAAGTACCCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074015.11
CDS-3UTR CAA 90 bp ATAACTAACCACCAAGTTCCTGGTTGCTTCTCTGGATTCACATACAGGTTTTCATTGGTTGTACCCAACTaGTTGGCAGCCACACAAGTA +
Preference number: 5 (lower is better)
Translates to: ITNHQVPGCFSGFTYRFSLVVPN*LAATQV
Trigger: TACTTGTGTGGCTGCCAACAAGTTGGGTACAACCAA...TGAAAACCTGTATGTGAATCCAGAGAAGCAACCAGGAACTTGGTGGTTAGTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS TCA 90 bp ACAAGTAAGGGTGACATTGGTTCCTTCATTGATGGTCATGTCATTTaGGATGTCGTATATTTTCGGTGGGACTTGCACAGTGAGATGAAC +
Preference number: 5 (lower is better)
Translates to: TSKGDIGSFIDGHVI*DVVYFRWDLHSEMN
Trigger: GTTCATCTCACTGTGCAAGTCCCACCGAAAATATACGACATCTCAAATGACATGACCATCAATGAAGGAACCAATGTCACCCTTACTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
CDS-3UTR CAA 90 bp ATTAGAGAGTCATGCTTGGTAATGAATATTTTCTCCATGAACCCTCTTCTTGCCATGATACTTGACCTGTaGAGCCAGGCACCCTTTGAT +
Preference number: 5 (lower is better)
Translates to: IRESCLVMNIFSMNPLLAMILDL*SQAPFD
Trigger: ATCAAAGGGTGCCTGGCTCAACAGGTCAAGTATCAT...GGCAAGAAGAGGGTTCATGGAGAAAATATTCATTACCAAGCATGACTCTCTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS-3UTR CAA 90 bp AACTTGTGTGTCTGTAGAAAAATCCCAGTTGCACGATTTTGGATATGGAAGCTCCTGAATGATAATTCCTaGTTGGCCATTGAAGAGCCT +
Preference number: 5 (lower is better)
Translates to: NLCVCRKIPVARFWIWKLLNDNS*LAIEEP
Trigger: AGGCTCTTCAATGGCCAACAAGGAATTATCATTCAG...GAGCTTCCATATCCAAAATCGTGCAACTGGGATTTTTCTACAGACACACAAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR CAA 90 bp AGATGCACAATGATTTTGATTACTTATATGGCTGGGTCTCTTAATAAGGGGGTTCAAGTAAGGGTGACATaGGTTCCTTCATTGATGGTC +
Preference number: 5 (lower is better)
Translates to: RCTMILITYMAGSLNKGVQVRVT*VPSLMV
Trigger: GACCATCAATGAAGGAACCAATGTCACCCTTACTTG...AACCCCCTTATTAAGAGACCCAGCCATATAAGTAATCAAAATCATTGTGCATCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS-3UTR CAA 90 bp ATCAAGTCTCTGTTCCTAGACAGACATTACCAGAGATTCCACAGTCCTCATTTTAATGATAATTCCTTGTaGGCCATTGAAGAGCCTCTT +
Preference number: 5 (lower is better)
Translates to: IKSLFLDRHYQRFHSPHFNDNSL*AIEEPL
Trigger: AAGAGGCTCTTCAATGGCCAACAAGGAATTATCATT...AAAATGAGGACTGTGGAATCTCTGGTAATGTCTGTCTAGGAACAGAGACTTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS GCA 72 bp ATGTTGTCCACGGCCGCCCAAGGGAAGTCCACGCTCTaGCCGGCCGGGAGGCAAGAGCACAGGCTCAGAAGC +
Preference number: 6 (lower is better)
Translates to: MLSTAAQGKSTL*PAGRQEHRLRS
Trigger: GCTTCTGAGCCTGTGCTCTTGCCTCCCGGCCGGGCAGAGCGTGGACTTCCCTTGGGCGGCCGTGGACAACAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
ENSMUST00000175773.2
CDS CCA 72 bp CAAGAGCACAGGCTCAGAAGCACCGCCGCCAGCCACTaGTTCGAGCAACAAGCGCCCTGCGCCAGGAGCACC +
Preference number: 6 (lower is better)
Translates to: QEHRLRSTAASH*FEQQAPCARST
Trigger: GGTGCTCCTGGCGCAGGGCGCTTGTTGCTCGAACCAGTGGCTGGCGGCGGTGCTTCTGAGCCTGTGCTCTTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
ENSMUST00000175773.2
CDS GCA 72 bp TCCTTTGTACCACTCGAAGGCCGGCGGCGGCACACCTaGACCCTCGCATCGTATCAGTCCACTGCGTCCAGG +
Preference number: 6 (lower is better)
Translates to: SFVPLEGRRRHT*TLASYQSTASR
Trigger: CCTGGACGCAGTGGACTGATACGATGCGAGGGTGCAGGTGTGCCGCCGCCGGCCTTCGAGTGGTACAAAGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
CDS CAA 72 bp CTGAGCACCGCTGTGTCACCTTTCCTCACCAGCATGTaGTCCACGGCCGCCCAAGGGAAGTCCACGCTCTGC +
Preference number: 6 (lower is better)
Translates to: LSTAVSPFLTSM*STAAQGKSTLC
Trigger: GCAGAGCGTGGACTTCCCTTGGGCGGCCGTGGACAACATGCTGGTGAGGAAAGGTGACACAGCGGTGCTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
CDS CAA 72 bp TCCACTGACCACTTGTCACCTTTCCTCACCAGCATGTaGTCCACGGCCGCCCAAGGGAAGTCCACGCTCTGC +
Preference number: 6 (lower is better)
Translates to: STDHLSPFLTSM*STAAQGKSTLC
Trigger: GCAGAGCGTGGACTTCCCTTGGGCGGCCGTGGACAACATGCTGGTGAGGAAAGGTGACAAGTGGTCAGTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175773.2
CDS TCA 72 bp AGTGAGCCCAGCACATTTGTAGATGGCACCAAAGGTTaGGGGGCAGGCTCGCGTTGGTTGTACCCAACTTGT +
Preference number: 6 (lower is better)
Translates to: SEPSTFVDGTKG*GAGSRWLYPTC
Trigger: ACAAGTTGGGTACAACCAACGCGAGCCTGCCCCTCAACCTTTGGTGCCATCTACAAATGTGCTGGGCTCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106065.2
CDS CAA 90 bp GAAACTTTCAACATGAAGAAAACTTGCCAGGGAATGGAACTCTGGTaGAGGGGCAGGCTCGCGTTGGTTGTACCCAACTTGTTGGCAGCC +
Preference number: 6 (lower is better)
Translates to: ETFNMKKTCQGMELW*RGRLALVVPNLLAA
Trigger: GGCTGCCAACAAGTTGGGTACAACCAACGCGAGCCTGCCCCTCAACCAGAGTTCCATTCCCTGGCAAGTTTTCTTCATGTTGAAAGTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS CCA 72 bp TTCAACATGAAGAAAACTTGCCAGGGAATGGAACTCTaGTTGAGGGGCAGGCTCGCGTTGGTTGTACCCAAC +
Preference number: 6 (lower is better)
Translates to: FNMKKTCQGMEL*LRGRLALVVPN
Trigger: GTTGGGTACAACCAACGCGAGCCTGCCCCTCAACCAGAGTTCCATTCCCTGGCAAGTTTTCTTCATGTTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS CAA 72 bp AACATGAAGAAAACTTGCCAGGGAATGGAACTCTGGTaGAGGGGCAGGCTCGCGTTGGTTGTACCCAACTTG +
Preference number: 6 (lower is better)
Translates to: NMKKTCQGMELW*RGRLALVVPNL
Trigger: CAAGTTGGGTACAACCAACGCGAGCCTGCCCCTCAACCAGAGTTCCATTCCCTGGCAAGTTTTCTTCATGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041425.12
CDS TCA 72 bp ATGTCGTATATTTTCGGTGGGACTTGCACAGTGAGATaGACCTGCATTGTCCGTGGTGTGTGTTGGGTCTGC +
Preference number: 6 (lower is better)
Translates to: MSYIFGGTCTVR*TCIVRGVCWVC
Trigger: GCAGACCCAACACACACCACGGACAATGCAGGTTCATCTCACTGTGCAAGTCCCACCGAAAATATACGACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
ENSMUST00000175773.2
CDS TCA 72 bp TTGAGATGTCGTATATTTTCGGTGGGACTTGCACAGTaGGATGAACCTGCATTGTCCGTGGTGTGTGTTGGG +
Preference number: 6 (lower is better)
Translates to: LRCRIFSVGLAQ*DEPALSVVCVG
Trigger: CCCAACACACACCACGGACAATGCAGGTTCATCTCACTGTGCAAGTCCCACCGAAAATATACGACATCTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
ENSMUST00000175773.2
CDS TCA 72 bp CTGCGTCCAGGGGTCACAGTGCCAGATTTAATTTCCTaGATTGTAGGCGCAAAGTTCACGATCACTCTCACT +
Preference number: 6 (lower is better)
Translates to: LRPGVTVPDLIS*IVGAKFTITLT
Trigger: AGTGAGAGTGATCGTGAACTTTGCGCCTACAATTCAGGAAATTAAATCTGGCACTGTGACCCCTGGACGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
CDS CAA 90 bp GGCTTCCCAGTGGCCAAACAAGTAAGGGTGACATTGGTTCCTTCATaGATGGTCATGTCATTTGAGATGTCGTATATTTTCGGTGGGACT +
Preference number: 6 (lower is better)
Translates to: GFPVAKQVRVTLVPS*MVMSFEMSYIFGGT
Trigger: AGTCCCACCGAAAATATACGACATCTCAAATGACATGACCATCAATGAAGGAACCAATGTCACCCTTACTTGTTTGGCCACTGGGAAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
CDS CCA 72 bp CGCAAAGTTCACGATCACTCTCACTTTCTTCACGTCTaGGAACGACACATCGTTTTCTGCACTGCATTCATA +
Preference number: 6 (lower is better)
Translates to: RKVHDHSHFLHV*ERHIVFCTAFI
Trigger: TATGAATGCAGTGCAGAAAACGATGTGTCGTTCCCAGACGTGAAGAAAGTGAGAGTGATCGTGAACTTTGCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
CDS CAA 72 bp TCTGGCTTCCCAGTGGCCAAACAAGTAAGGGTGACATaGGTTCCTTCATTGATGGTCATGTCATTTGAGATG +
Preference number: 6 (lower is better)
Translates to: SGFPVAKQVRVT*VPSLMVMSFEM
Trigger: CATCTCAAATGACATGACCATCAATGAAGGAACCAATGTCACCCTTACTTGTTTGGCCACTGGGAAGCCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
CDS CAA 90 bp ATGACAGGCTCTGGCTTCCCAGTGGCCAAACAAGTAAGGGTGACATaGGTTCCTTCATTGATGGTCATGTCATTTGAGATGTCGTATATT +
Preference number: 6 (lower is better)
Translates to: MTGSGFPVAKQVRVT*VPSLMVMSFEMSYI
Trigger: AATATACGACATCTCAAATGACATGACCATCAATGAAGGAACCAATGTCACCCTTACTTGTTTGGCCACTGGGAAGCCAGAGCCTGTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
CDS CAA 90 bp CACTGTGAGGATGGATCTTGTGCTAAAATTCTGAATGATAATTCCTaGTTGGCCATTGAAGAGCCTCTTCTCTCCTTTGTACCACTCGAA +
Preference number: 6 (lower is better)
Translates to: HCEDGSCAKILNDNS*LAIEEPLLSFVPLE
Trigger: TTCGAGTGGTACAAAGGAGAGAAGAGGCTCTTCAATGGCCAACAAGGAATTATCATTCAGAATTTTAGCACAAGATCCATCCTCACAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2
CDS CAA 72 bp GTGGCCAAACAAGTAAGGGTGACATTGGTTCCTTCATaGATGGTCATGTCATTTGAGATGTCGTATATTTTC +
Preference number: 6 (lower is better)
Translates to: VAKQVRVTLVPS*MVMSFEMSYIF
Trigger: GAAAATATACGACATCTCAAATGACATGACCATCAATGAAGGAACCAATGTCACCCTTACTTGTTTGGCCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041425.12
ENSMUST00000074015.11
ENSMUST00000106065.2