Pregenerated sensors for NEFH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020396

Ensembl transcript IDs: ENSMUST00000093369.5

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CTCAGCTGGAGATTTGGCTTCAGCTGGAGATTTGGCCTCAGATGGTaGCTTGGCCTCACCTGGAGACTTCACTGTAGCTGGAGACTTGGG	+
Preference number: 5 (lower is better) Translates to: LSWRFGFSWRFGLRW*LGLTWRLHCSWRLG Trigger: CCCAAGTCTCCAGCTACAGTGAAGTCTCCAGGTGAGGCCAAGTCACCATCTGAGGCCAAATCTCCAGCTGAAGCCAAATCTCCAGCTGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093369.5
CDS GCA 90 bp	TGTAGCTGCTGCTCCTTCCTCTTCTTCTTTTTCTTCTCCCTCTTCTaGTTCTTCTCCTTCCTGACCTTGGGCCTCTTTGTCCTCCTCTTC	+
Preference number: 5 (lower is better) Translates to: CSCCSFLFFFFFSLF*FFSFLTLGLFVLLF Trigger: GAAGAGGAGGACAAAGAGGCCCAAGGTCAGGAAGGAGAAGAAGCAGAAGAGGGAGAAGAAAAAGAAGAAGAGGAAGGAGCAGCAGCTACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093369.5
CDS CCA 90 bp	CTCCTTGGGAGCTTCGTCTTTCTTACTCTCCTTCGCCTCTGTCTTTaGTGTAGGCAGTGTCTTCTCTTCTTCTACCTTCTTTGGGGGTTC	+
Preference number: 5 (lower is better) Translates to: LLGSFVFLTLLRLCL*CRQCLLFFYLLWGF Trigger: GAACCCCCAAAGAAGGTAGAAGAAGAGAAGACACTGCCTACACCAAAGACAGAGGCGAAGGAGAGTAAGAAAGACGAAGCTCCCAAGGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093369.5
CDS GCA 72 bp	GGAGGAGCCGGCCGCGGAGCGCGTGCCGCCCGGGCCTaGCTTGCGGCTCAGCGAGTAGTGCAGGCTGCCGCC	+
Preference number: 6 (lower is better) Translates to: GGAGRGARAARA*LAAQRVVQAAA Trigger: GGCGGCAGCCTGCACTACTCGCTGAGCCGCAAGGCAGGCCCGGGCGGCACGCGCTCCGCGGCCGGCTCCTCC 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093369.5
CDS TCA 72 bp	CGCGGATCTCCCGCAGCGCCGACGTCACGTCGCACTTaGGGGCGTCGCGAGCCTCGGCCTGAGCCTGCGCCT	+
Preference number: 6 (lower is better) Translates to: RGSPAAPTSRRT*GRREPRPEPAP Trigger: AGGCGCAGGCTCAGGCCGAGGCTCGCGACGCCCTCAAGTGCGACGTGACGTCGGCGCTGCGGGAGATCCGCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093369.5
CDS CAA 90 bp	GCTGGAGATTTGGCTTCAGCTGGAGATTTGGCCTCAGATGGTGACTaGGCCTCACCTGGAGACTTCACTGTAGCTGGAGACTTGGGCTCA	+
Preference number: 6 (lower is better) Translates to: AGDLASAGDLASDGD*ASPGDFTVAGDLGS Trigger: TGAGCCCAAGTCTCCAGCTACAGTGAAGTCTCCAGGTGAGGCCAAGTCACCATCTGAGGCCAAATCTCCAGCTGAAGCCAAATCTCCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093369.5

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