Pregenerated sensors for NEDD8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000010376

Ensembl transcript IDs: ENSMUST00000010520.10, ENSMUST00000163750.8, ENSMUST00000227250.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	AGCACACATGACTGCAAACTAAAACCCAATAGCCAGCAGGGGCCATCTGGGCCAGTAGACACACAAGATTaGGCATCCAAGAGAGGGGGC	+
Preference number: 2 (lower is better) Translates to: STHDCKLKPNSQQGPSGPVDTQD*ASKRGG Trigger: GCCCCCTCTCTTGGATGCCCAATCTTGTGTGTCTAC...TGGCCCAGATGGCCCCTGCTGGCTATTGGGTTTTAGTTTGCAGTCATGTGTGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000010520.10 ENSMUST00000227250.2
3UTR-3UTR GCA 90 bp	CAGGGAAGCACACATGACTGCAAACTAAAACCCAATAGCCAGCAGGGGCCATCTACCAAGTTTCTTCACTaGCCAAGACCACCTCCTCCT	+
Preference number: 2 (lower is better) Translates to: QGSTHDCKLKPNSQQGPSTKFLH*PRPPPP Trigger: AGGAGGAGGTGGTCTTGGGCAGTGAAGAAACTTGGT...AGATGGCCCCTGCTGGCTATTGGGTTTTAGTTTGCAGTCATGTGTGCTTCCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227250.2
3UTR-3UTR CCA 90 bp	CCAGGAACACTGCACCCTGGGGTCCTCACATTCTCCCAGAGAGTGAGAGGATATATGCCACATTATGATTaGCAGGGCAAGGAGGTAAAC	+
Preference number: 2 (lower is better) Translates to: PGTLHPGVLTFSQRVRGYMPHYD*QGKEVN Trigger: GTTTACCTCCTTGCCCTGCCAATCATAATGTGGCAT...ATATCCTCTCACTCTCTGGGAGAATGTGAGGACCCCAGGGTGCAGTGTTCCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163750.8
3UTR-3UTR CCA 90 bp	ATAAGACAGGGAAGCACACATGACTGCAAACTAAAACCCAATAGCCAGCAGGGGATGCCACATTATGATTaGCAGGGCAAGGAGGTAAAC	+
Preference number: 2 (lower is better) Translates to: IRQGSTHDCKLKPNSQQGMPHYD*QGKEVN Trigger: GTTTACCTCCTTGCCCTGCCAATCATAATGTGGCAT...CCCCTGCTGGCTATTGGGTTTTAGTTTGCAGTCATGTGTGCTTCCCTGTCTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000010520.10 ENSMUST00000163750.8 ENSMUST00000227250.2
CDS-3UTR CAA 90 bp	GGAAGCACACATGACTGCAAACTAAAACCCAATAGCCAGCAGGGGCCATCTGGGTTGATTCGCTCCACCTaGTCTGTGGGTTCGATGTCT	+
Preference number: 5 (lower is better) Translates to: GSTHDCKLKPNSQQGPSGLIRST*SVGSMS Trigger: AGACATCGAACCCACAGACAAGGTGGAGCGAATCAA...CCCAGATGGCCCCTGCTGGCTATTGGGTTTTAGTTTGCAGTCATGTGTGCTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010520.10 ENSMUST00000163750.8
CDS-3UTR CAA 90 bp	AGCACACATGACTGCAAACTAAAACCCAATAGCCAGCAGGGGCCATCTGGGCCATTGATTCGCTCCACCTaGTCTGTGGGTTCGATGTCT	+
Preference number: 5 (lower is better) Translates to: STHDCKLKPNSQQGPSGPLIRST*SVGSMS Trigger: AGACATCGAACCCACAGACAAGGTGGAGCGAATCAA...TGGCCCAGATGGCCCCTGCTGGCTATTGGGTTTTAGTTTGCAGTCATGTGTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010520.10 ENSMUST00000163750.8
CDS-3UTR CAA 90 bp	GGAACACTGCACCCTGGGGTCCTCACATTCTCCCAGAGAGTGAGAGGATATGTGCTTCTCATCATTCATTaGCTTGCCACTGTAGATGAG	+
Preference number: 5 (lower is better) Translates to: GTLHPGVLTFSQRVRGYVLLIIH*LATVDE Trigger: CTCATCTACAGTGGCAAGCAAATGAATGATGAGAAG...CACATATCCTCTCACTCTCTGGGAGAATGTGAGGACCCCAGGGTGCAGTGTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163750.8
CDS-3UTR CAA 90 bp	ATAAGACAGGGAAGCACACATGACTGCAAACTAAAACCCAATAGCCAGCAGGGGCTTCTCATCATTCATTaGCTTGCCACTGTAGATGAG	+
Preference number: 5 (lower is better) Translates to: IRQGSTHDCKLKPNSQQGLLIIH*LATVDE Trigger: CTCATCTACAGTGGCAAGCAAATGAATGATGAGAAG...CCCCTGCTGGCTATTGGGTTTTAGTTTGCAGTCATGTGTGCTTCCCTGTCTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010520.10 ENSMUST00000163750.8

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