Pregenerated sensors for NECAP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030327Ensembl transcript IDs: ENSMUST00000032477.6
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGAAGCTACGGGAAAGACTGACCACTGATTTGGGTTCTGGGAAATaGAGCTGTCCCTCAACTCCCTCAGAAAATGGTGCCCTCGAGGTC | + |
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Preference number: 1 (lower is better) Translates to: EKLRERLTTDLGSGK*SCPSTPSENGALEV Trigger: GACCTCGAGGGCACCATTTTCTGAGGGAGTTGAGGGACAGCTTCATTTCCCAGAACCCAAATCAGTGGTCAGTCTTTCCCGTAGCTTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR CCA 90 bp | CAGCACTGTAAAAGGAATGGTGGACAGACACTGGAGAGTGATGGGTaGGAACTTGCTTTAAGATATCCTAGCTGGGTATCAAAGCCTAGC | + |
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Preference number: 1 (lower is better) Translates to: QHCKRNGGQTLESDG*ELALRYPSWVSKPS Trigger: GCTAGGCTTTGATACCCAGCTAGGATATCTTAAAGCAAGTTCCCACCCATCACTCTCCAGTGTCTGTCCACCATTCCTTTTACAGTGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR TCA 90 bp | AAAGTTGGTCAGTGTGATAATTCCCACTACTCCCCTGCTTGGTTATaGGCAGGAAACAGCAGATTGTCCCCTGGCTATACAGCAAGTACA | + |
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Preference number: 1 (lower is better) Translates to: KVGQCDNSHYSPAWL*AGNSRLSPGYTAST Trigger: TGTACTTGCTGTATAGCCAGGGGACAATCTGCTGTTTCCTGCTCATAACCAAGCAGGGGAGTAGTGGGAATTATCACACTGACCAACTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR TCA 90 bp | TTACAGAAAAGAACTGGGACACAGCTTTCTCCAAATCTAACCCTATaGAAACCCAAACTTTGTGAGTCCTGGGGCCAGCCTGCCCATTTT | + |
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Preference number: 1 (lower is better) Translates to: LQKRTGTQLSPNLTL*KPKLCESWGQPAHF Trigger: AAAATGGGCAGGCTGGCCCCAGGACTCACAAAGTTTGGGTTTTCATAGGGTTAGATTTGGAGAAAGCTGTGTCCCAGTTCTTTTCTGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR GCA 90 bp | CCCTTGACTCCCTTCATCTCAGAAATATTCACTGGTCAAAGATGCTaGACTATTGAACAAGAAAACAGTAAGGTACCACCAACACAACCC | + |
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Preference number: 1 (lower is better) Translates to: PLTPFISEIFTGQRC*TIEQENSKVPPTQP Trigger: GGGTTGTGTTGGTGGTACCTTACTGTTTTCTTGTTCAATAGTGCAGCATCTTTGACCAGTGAATATTTCTGAGATGAAGGGAGTCAAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR GCA 90 bp | AGCCCCTTGACTCCCTTCATCTCAGAAATATTCACTGGTCAAAGATaGTGCACTATTGAACAAGAAAACAGTAAGGTACCACCAACACAA | + |
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Preference number: 1 (lower is better) Translates to: SPLTPFISEIFTGQR*CTIEQENSKVPPTQ Trigger: TTGTGTTGGTGGTACCTTACTGTTTTCTTGTTCAATAGTGCAGCATCTTTGACCAGTGAATATTTCTGAGATGAAGGGAGTCAAGGGGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR TCA 90 bp | GCAGGTGCTTGCAGGAGTGAGAGTCCTCCCATTCTGCCCTCAAACTGCCCAACATTGGGTTCTGGGAAATaGAGCTGTCCCTCAACTCCC | + |
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Preference number: 2 (lower is better) Translates to: AGACRSESPPILPSNCPTLGSGK*SCPSTP Trigger: GGGAGTTGAGGGACAGCTTCATTTCCCAGAACCCAA...TGTTGGGCAGTTTGAGGGCAGAATGGGAGGACTCTCACTCCTGCAAGCACCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR CCA 90 bp | GCAGGTGCTTGCAGGAGTGAGAGTCCTCCCATTCTGCCCTCAAACTGCCCAACAATGGTGGACAGACACTaGAGAGTGATGGGTGGGAAC | + |
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Preference number: 2 (lower is better) Translates to: AGACRSESPPILPSNCPTMVDRH*RVMGGN Trigger: GTTCCCACCCATCACTCTCCAGTGTCTGTCCACCAT...TGTTGGGCAGTTTGAGGGCAGAATGGGAGGACTCTCACTCCTGCAAGCACCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR TCA 90 bp | GCAGGTGCTTGCAGGAGTGAGAGTCCTCCCATTCTGCCCTCAAACTGCCCAACATCCCCTGCTTGGTTATaGGCAGGAAACAGCAGATTG | + |
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Preference number: 2 (lower is better) Translates to: AGACRSESPPILPSNCPTSPAWL*AGNSRL Trigger: CAATCTGCTGTTTCCTGCTCATAACCAAGCAGGGGA...TGTTGGGCAGTTTGAGGGCAGAATGGGAGGACTCTCACTCCTGCAAGCACCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR TCA 90 bp | CAAGCAGGTGCTTGCAGGAGTGAGAGTCCTCCCATTCTGCCCTCAAACTGCCCAACAGACACTGGAGAGTaGTGGGTGGGAACTTGCTTT | + |
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Preference number: 2 (lower is better) Translates to: QAGACRSESPPILPSNCPTDTGE*WVGTCF Trigger: AAAGCAAGTTCCCACCCATCACTCTCCAGTGTCTGT...TGGGCAGTTTGAGGGCAGAATGGGAGGACTCTCACTCCTGCAAGCACCTGCTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR CCA 90 bp | CAAGCAGGTGCTTGCAGGAGTGAGAGTCCTCCCATTCTGCCCTCAAACTGCCCACTGTGGAGTACAATGTaGAAAGCACAGCCCCTTGAC | + |
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Preference number: 2 (lower is better) Translates to: QAGACRSESPPILPSNCPLWSTM*KAQPLD Trigger: GTCAAGGGGCTGTGCTTTCCACATTGTACTCCACAG...TGGGCAGTTTGAGGGCAGAATGGGAGGACTCTCACTCCTGCAAGCACCTGCTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR TCA 90 bp | GCAAAGTTGGTCAGTGTGATAATTCCCACTACTCCCCTGCTTGGTTATGAGCAGGGAAAGACTGACCACTaGTTTGGGTTCTGGGAAATG | + |
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Preference number: 2 (lower is better) Translates to: AKLVSVIIPTTPLLGYEQGKTDH*FGFWEM Trigger: CATTTCCCAGAACCCAAATCAGTGGTCAGTCTTTCC...CTGCTCATAACCAAGCAGGGGAGTAGTGGGAATTATCACACTGACCAACTTTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR GCA 90 bp | CTCACTGAATGGGATAAGCCTGAAGGAGGCCTTACAGAAAAGAACTGGGACACAAGAATCCAGCCTGAATaGACAGAGAAGCTACGGGAA | + |
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Preference number: 2 (lower is better) Translates to: LTEWDKPEGGLTEKNWDTRIQPE*TEKLRE Trigger: TTCCCGTAGCTTCTCTGTGCATTCAGGCTGGATTCT...TGTGTCCCAGTTCTTTTCTGTAAGGCCTCCTTCAGGCTTATCCCATTCAGTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR CCA 90 bp | CTCACTGAATGGGATAAGCCTGAAGGAGGCCTTACAGAAAAGAACTGGGACACACAGCAGATTGTCCCCTaGCTATACAGCAAGTACACA | + |
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Preference number: 2 (lower is better) Translates to: LTEWDKPEGGLTEKNWDTQQIVP*LYSKYT Trigger: TGTGTACTTGCTGTATAGCCAGGGGACAATCTGCTG...TGTGTCCCAGTTCTTTTCTGTAAGGCCTCCTTCAGGCTTATCCCATTCAGTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR GCA 90 bp | TTCTGCCCTCAAACTGCCCAACAAACAAAGGACAGTACCCACCAACCTCAACGGGTGCTTCCAGCTTTCTaGTCTACACATCAAGTTAAA | + |
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Preference number: 2 (lower is better) Translates to: FCPQTAQQTKDSTHQPQRVLPAF*STHQVK Trigger: TTTAACTTGATGTGTAGAGCAGAAAGCTGGAAGCAC...CCGTTGAGGTTGGTGGGTACTGTCCTTTGTTTGTTGGGCAGTTTGAGGGCAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR GCA 90 bp | TGTAAAAGGAATGGTGGACAGACACTGGAGAGTGATGGGTGGGAACTTGCTTTATGGCCTTCTGAACTCTaGAAAGTTGGTCAGTGTGAT | + |
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Preference number: 2 (lower is better) Translates to: CKRNGGQTLESDGWELALWPSEL*KVGQCD Trigger: ATCACACTGACCAACTTTGCAGAGTTCAGAAGGCCA...TAAAGCAAGTTCCCACCCATCACTCTCCAGTGTCTGTCCACCATTCCTTTTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR CCA 90 bp | GCATTGAGTAGAACTATATATTTGAAAGGACCCTCTTCAGCCAGAGTGTGCTATAAACTTTGTGAGTCCTaGGGCCAGCCTGCCCATTTT | + |
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Preference number: 2 (lower is better) Translates to: ALSRTIYLKGPSSARVCYKLCES*GQPAHF Trigger: AAAATGGGCAGGCTGGCCCCAGGACTCACAAAGTTT...ATAGCACACTCTGGCTGAAGAGGGTCCTTTCAAATATATAGTTCTACTCAATGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR TCA 90 bp | GCATTGAGTAGAACTATATATTTGAAAGGACCCTCTTCAGCCAGAGTGTGCTATAAAAAGAATCCAGCCTaGATGCACAGAGAAGCTACG | + |
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Preference number: 2 (lower is better) Translates to: ALSRTIYLKGPSSARVCYKKNPA*MHREAT Trigger: CGTAGCTTCTCTGTGCATTCAGGCTGGATTCTTTTT...ATAGCACACTCTGGCTGAAGAGGGTCCTTTCAAATATATAGTTCTACTCAATGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR TCA 90 bp | AATGGTGGACAGACACTGGAGAGTGATGGGTGGGAACTTGCTTTAAGATATCCTGAAATGAAATGTTTATaGAAAGGAGTCAAAGCCAGG | + |
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Preference number: 2 (lower is better) Translates to: NGGQTLESDGWELALRYPEMKCL*KGVKAR Trigger: CCTGGCTTTGACTCCTTTTCATAAACATTTCATTTC...AGGATATCTTAAAGCAAGTTCCCACCCATCACTCTCCAGTGTCTGTCCACCATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR GCA 90 bp | GCATTGAGTAGAACTATATATTTGAAAGGACCCTCTTCAGCCAGAGTGTGCTATACTGGTCAAAGATGCTaGACTATTGAACAAGAAAAC | + |
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Preference number: 2 (lower is better) Translates to: ALSRTIYLKGPSSARVCYTGQRC*TIEQEN Trigger: GTTTTCTTGTTCAATAGTGCAGCATCTTTGACCAGT...ATAGCACACTCTGGCTGAAGAGGGTCCTTTCAAATATATAGTTCTACTCAATGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR TCA 72 bp | GCCAGAGTGTGCTATCCAAGCAGGTGCTTGCAGGAGTaGGAGTCCTCCCATTCTGCCCTCAAACTGCCCAAC | + |
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Preference number: 3 (lower is better) Translates to: ARVCYPSRCLQE*ESSHSALKLPN Trigger: GTTGGGCAGTTTGAGGGCAGAATGGGAGGACTCTCACTCCTGCAAGCACCTGCTTGGATAGCACACTCTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR CAA 90 bp | CAAGCAGGTGCTTGCAGGAGTGAGAGTCCTCCCATTCTGCCCTCAAACTGCCCACCACTACTCCCCTGCTaGGTTATGAGCAGGAAACAG | + |
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Preference number: 3 (lower is better) Translates to: QAGACRSESPPILPSNCPPLLPC*VMSRKQ Trigger: CTGTTTCCTGCTCATAACCAAGCAGGGGAGTAGTGG...TGGGCAGTTTGAGGGCAGAATGGGAGGACTCTCACTCCTGCAAGCACCTGCTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR GCA 72 bp | CCTCTTCAGCCAGAGTGTGCTATCCAAGCAGGTGCTTaGAGGAGTGAGAGTCCTCCCATTCTGCCCTCAAAC | + |
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Preference number: 3 (lower is better) Translates to: PLQPECAIQAGA*RSESPPILPSN Trigger: GTTTGAGGGCAGAATGGGAGGACTCTCACTCCTGCAAGCACCTGCTTGGATAGCACACTCTGGCTGAAGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR GCA 72 bp | AAGCAGGTGCTTGCAGGAGTGAGAGTCCTCCCATTCTaGCCTCAAACTGCCCAACAAACAAAGGACAGTACC | + |
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Preference number: 3 (lower is better) Translates to: KQVLAGVRVLPF*PQTAQQTKDST Trigger: GGTACTGTCCTTTGTTTGTTGGGCAGTTTGAGGGCAGAATGGGAGGACTCTCACTCCTGCAAGCACCTGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR CAA 90 bp | TGTAAAAGGAATGGTGGACAGACACTGGAGAGTGATGGGTGGGAACTTGCTTTACCAGGCAGCAAGGCATaGTGGGTACTGAATGGGAGC | + |
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Preference number: 3 (lower is better) Translates to: CKRNGGQTLESDGWELALPGSKA*WVLNGS Trigger: GCTCCCATTCAGTACCCACAATGCCTTGCTGCCTGG...TAAAGCAAGTTCCCACCCATCACTCTCCAGTGTCTGTCCACCATTCCTTTTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR TCA 72 bp | CGGGAAAGACTGACCACTGATTTGGGTTCTGGGAAATaGAGCTGTCCCTCAACTCCCTCAGAAAATGGTGCC | + |
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Preference number: 3 (lower is better) Translates to: RERLTTDLGSGK*SCPSTPSENGA Trigger: GGCACCATTTTCTGAGGGAGTTGAGGGACAGCTTCATTTCCCAGAACCCAAATCAGTGGTCAGTCTTTCCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR TCA 72 bp | TCCAGCCTGAATGCACAGAGAAGCTACGGGAAAGACTaGCCACTGATTTGGGTTCTGGGAAATGAAGCTGTC | + |
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Preference number: 3 (lower is better) Translates to: SSLNAQRSYGKD*PLIWVLGNEAV Trigger: GACAGCTTCATTTCCCAGAACCCAAATCAGTGGTCAGTCTTTCCCGTAGCTTCTCTGTGCATTCAGGCTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR TCA 72 bp | CAGTGTGATAATTCCCACTACTCCCCTGCTTGGTTATaGGCAGGAAACAGCAGATTGTCCCCTGGCTATACA | + |
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Preference number: 3 (lower is better) Translates to: QCDNSHYSPAWL*AGNSRLSPGYT Trigger: TGTATAGCCAGGGGACAATCTGCTGTTTCCTGCTCATAACCAAGCAGGGGAGTAGTGGGAATTATCACACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR TCA 72 bp | AGAACTGGGACACAGCTTTCTCCAAATCTAACCCTATaGAAACCCAAACTTTGTGAGTCCTGGGGCCAGCCT | + |
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Preference number: 3 (lower is better) Translates to: RTGTQLSPNLTL*KPKLCESWGQP Trigger: AGGCTGGCCCCAGGACTCACAAAGTTTGGGTTTTCATAGGGTTAGATTTGGAGAAAGCTGTGTCCCAGTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR CAA 90 bp | CTGCCCAACAAACAAAGGACAGTACCCACCAACCTCAACGGGAGCTCTTCACAGACAGTTTCAAGGCATTaGTCTCTCCTGAAATTGCTA | + |
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Preference number: 3 (lower is better) Translates to: LPNKQRTVPTNLNGSSSQTVSRH*SLLKLL Trigger: TAGCAATTTCAGGAGAGACAAATGCCTTGAAACTGT...CTGTGAAGAGCTCCCGTTGAGGTTGGTGGGTACTGTCCTTTGTTTGTTGGGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR-3UTR CAA 90 bp | AATGGGATAAGCCTGAAGGAGGCCTTACAGAAAAGAACTGGGACACAGCTTTCTCTGAACTCTGCAAAGTaGGTCAGTGTGATAATTCCC | + |
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Preference number: 3 (lower is better) Translates to: NGISLKEALQKRTGTQLSLNSAK*VSVIIP Trigger: GGGAATTATCACACTGACCAACTTTGCAGAGTTCAG...AGAAAGCTGTGTCCCAGTTCTTTTCTGTAAGGCCTCCTTCAGGCTTATCCCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR CCA 72 bp | AAAAGGAATGGTGGACAGACACTGGAGAGTGATGGGTaGGAACTTGCTTTAAGATATCCTAGCTGGGTATCA | + |
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Preference number: 3 (lower is better) Translates to: KRNGGQTLESDG*ELALRYPSWVS Trigger: TGATACCCAGCTAGGATATCTTAAAGCAAGTTCCCACCCATCACTCTCCAGTGTCTGTCCACCATTCCTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR GCA 72 bp | CCCTTCATCTCAGAAATATTCACTGGTCAAAGATGCTaGACTATTGAACAAGAAAACAGTAAGGTACCACCA | + |
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Preference number: 3 (lower is better) Translates to: PFISEIFTGQRC*TIEQENSKVPP Trigger: TGGTGGTACCTTACTGTTTTCTTGTTCAATAGTGCAGCATCTTTGACCAGTGAATATTTCTGAGATGAAGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR GCA 72 bp | ACTCCCTTCATCTCAGAAATATTCACTGGTCAAAGATaGTGCACTATTGAACAAGAAAACAGTAAGGTACCA | + |
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Preference number: 3 (lower is better) Translates to: TPFISEIFTGQR*CTIEQENSKVP Trigger: TGGTACCTTACTGTTTTCTTGTTCAATAGTGCAGCATCTTTGACCAGTGAATATTTCTGAGATGAAGGGAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR CCA 90 bp | AATGGGATAAGCCTGAAGGAGGCCTTACAGAAAAGAACTGGGACACAGCTTTCTCCCTGTAACCGCGGTTaGAGGCCCGCGGCGGAATCC | + |
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Preference number: 4 (lower is better) Translates to: NGISLKEALQKRTGTQLSPCNRG*RPAAES Trigger: GGATTCCGCCGCGGGCCTCCAACCGCGGTTACAGGG...AGAAAGCTGTGTCCCAGTTCTTTTCTGTAAGGCCTCCTTCAGGCTTATCCCATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR CCA 90 bp | GCAGGTGCTTGCAGGAGTGAGAGTCCTCCCATTCTGCCCTCAAACTGCCCAACATTTTGGAATAGGTGGTaGGGTGACATGGTTGCTGAT | + |
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Preference number: 4 (lower is better) Translates to: AGACRSESPPILPSNCPTFWNRW*GDMVAD Trigger: ATCAGCAACCATGTCACCCCACCACCTATTCCAAAA...TGTTGGGCAGTTTGAGGGCAGAATGGGAGGACTCTCACTCCTGCAAGCACCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR TCA 90 bp | AACAAACAAAGGACAGTACCCACCAACCTCAACGGGAGCTCTTCACAGCACTGTTTCCATCCTGGATCCTaGTCACAAAGTAGCGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: NKQRTVPTNLNGSSSQHCFHPGS*SQSSGW Trigger: CCAGCCGCTACTTTGTGATCAGGATCCAGGATGGAA...ACAGTGCTGTGAAGAGCTCCCGTTGAGGTTGGTGGGTACTGTCCTTTGTTTGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR CCA 90 bp | TTCTGCCCTCAAACTGCCCAACAAACAAAGGACAGTACCCACCAACCTCAACGGTCACAAAGTAGCGGCTaGAGTCTGTCACAGTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: FCPQTAQQTKDSTHQPQRSQSSG*SLSQSP Trigger: TGGAGACTGTGACAGACTCCAGCCGCTACTTTGTGA...CCGTTGAGGTTGGTGGGTACTGTCCTTTGTTTGTTGGGCAGTTTGAGGGCAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR TCA 90 bp | CAAGCAGGTGCTTGCAGGAGTGAGAGTCCTCCCATTCTGCCCTCAAACTGCCCATTTACCCACTTGAAGTaGTCTTGCAGGGAAACATTA | + |
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Preference number: 4 (lower is better) Translates to: QAGACRSESPPILPSNCPFTHLK*SCRETL Trigger: TAATGTTTCCCTGCAAGATCACTTCAAGTGGGTAAA...TGGGCAGTTTGAGGGCAGAATGGGAGGACTCTCACTCCTGCAAGCACCTGCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR CCA 90 bp | AATGGTGGACAGACACTGGAGAGTGATGGGTGGGAACTTGCTTTAAGATATCCTGGTGGTGGGGTGACATaGTTGCTGATGGCAACTGAG | + |
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Preference number: 4 (lower is better) Translates to: NGGQTLESDGWELALRYPGGGVT*LLMATE Trigger: CTCAGTTGCCATCAGCAACCATGTCACCCCACCACC...AGGATATCTTAAAGCAAGTTCCCACCCATCACTCTCCAGTGTCTGTCCACCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR TCA 90 bp | CTTGGTTATGAGCAGGAAACAGCAGATTGTCCCCTGGCTATACAGCAAGTACACTGGTCTGTCCTTCCTTaGAGCCTAAATCCAACTTGG | + |
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Preference number: 4 (lower is better) Translates to: LGYEQETADCPLAIQQVHWSVLP*SLNPTW Trigger: CCAAGTTGGATTTAGGCTTCAAGGAAGGACAGACCA...GTGTACTTGCTGTATAGCCAGGGGACAATCTGCTGTTTCCTGCTCATAACCAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR TCA 90 bp | GCAAAGTTGGTCAGTGTGATAATTCCCACTACTCCCCTGCTTGGTTATGAGCAGAGCAAAGAGCTCCCCTaGAACTTTGTCTTCCAGTTT | + |
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Preference number: 4 (lower is better) Translates to: AKLVSVIIPTTPLLGYEQSKELP*NFVFQF Trigger: AAACTGGAAGACAAAGTTTCAGGGGAGCTCTTTGCT...CTGCTCATAACCAAGCAGGGGAGTAGTGGGAATTATCACACTGACCAACTTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR TCA 90 bp | TGTAAAAGGAATGGTGGACAGACACTGGAGAGTGATGGGTGGGAACTTGCTTTACCTGCTTTACCCACTTaGAGTGATCTTGCAGGGAAA | + |
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Preference number: 4 (lower is better) Translates to: CKRNGGQTLESDGWELALPALPT*SDLAGK Trigger: TTTCCCTGCAAGATCACTTCAAGTGGGTAAAGCAGG...TAAAGCAAGTTCCCACCCATCACTCTCCAGTGTCTGTCCACCATTCCTTTTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR TCA 90 bp | ACGGGATGCTCACTGAATGGGATAAGCCTGAAGGAGGCCTTACAGAAAAGAACTCTTTGTCTTCCAGTTTaGTGTAGGCAATCTTCCCTT | + |
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Preference number: 4 (lower is better) Translates to: TGCSLNGISLKEALQKRTLCLPV*CRQSSL Trigger: AAGGGAAGATTGCCTACATCAAACTGGAAGACAAAG...AGTTCTTTTCTGTAAGGCCTCCTTCAGGCTTATCCCATTCAGTGAGCATCCCGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR CCA 90 bp | CTTGGTTATGAGCAGGAAACAGCAGATTGTCCCCTGGCTATACAGCAAGTACACAGCCTAAATCCAACTTaGGACGATTATCCATTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LGYEQETADCPLAIQQVHSLNPT*DDYPFP Trigger: AGGAAATGGATAATCGTCCCAAGTTGGATTTAGGCT...GTGTACTTGCTGTATAGCCAGGGGACAATCTGCTGTTTCCTGCTCATAACCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| 3UTR CAA 72 bp | AAAAAGCTAAGGAGAGCATTGAGTAGAACTATATATTaGAAAGGACCCTCTTCAGCCAGAGTGTGCTATCCA | + |
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Preference number: 4 (lower is better) Translates to: KKLRRALSRTIY*KGPSSARVCYP Trigger: TGGATAGCACACTCTGGCTGAAGAGGGTCCTTTCAAATATATAGTTCTACTCAATGCTCTCCTTAGCTTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR CCA 90 bp | GCATTGAGTAGAACTATATATTTGAAAGGACCCTCTTCAGCCAGAGTGTGCTATGAATCATTACCTCCATaGTTAGATTTTGGAATAGGT | + |
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Preference number: 4 (lower is better) Translates to: ALSRTIYLKGPSSARVCYESLPP*LDFGIG Trigger: ACCTATTCCAAAATCTAACCATGGAGGTAATGATTC...ATAGCACACTCTGGCTGAAGAGGGTCCTTTCAAATATATAGTTCTACTCAATGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR CAA 90 bp | TGTAAAAGGAATGGTGGACAGACACTGGAGAGTGATGGGTGGGAACTTGCTTTAGGGGGAATAGTGACTTaGCCTCCAGGTGGCGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: CKRNGGQTLESDGWELALGGIVT*PPGGGG Trigger: GCCACCGCCACCTGGAGGCAAAGTCACTATTCCCCC...TAAAGCAAGTTCCCACCCATCACTCTCCAGTGTCTGTCCACCATTCCTTTTACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR CAA 90 bp | AACAAACAAAGGACAGTACCCACCAACCTCAACGGGAGCTCTTCACAGCACTGTGGTGGGGTGACATGGTaGCTGATGGCAACTGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: NKQRTVPTNLNGSSSQHCGGVTW*LMATEE Trigger: CTCCTCAGTTGCCATCAGCAACCATGTCACCCCACC...ACAGTGCTGTGAAGAGCTCCCGTTGAGGTTGGTGGGTACTGTCCTTTGTTTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR CAA 90 bp | GCAGGTGCTTGCAGGAGTGAGAGTCCTCCCATTCTGCCCTCAAACTGCCCAACAGAAGCACCTCCTTTCTaGGCTGTAATATTCCCAATA | + |
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Preference number: 5 (lower is better) Translates to: AGACRSESPPILPSNCPTEAPPF*AVIFPI Trigger: TATTGGGAATATTACAGCCAAGAAAGGAGGTGCTTC...TGTTGGGCAGTTTGAGGGCAGAATGGGAGGACTCTCACTCCTGCAAGCACCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR CAA 90 bp | AATGGGATAAGCCTGAAGGAGGCCTTACAGAAAAGAACTGGGACACAGCTTTCTGAGCTGGTGCTGAAGTaGAGACAGGAGCCGGAGAAT | + |
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Preference number: 5 (lower is better) Translates to: NGISLKEALQKRTGTQLSELVLK*RQEPEN Trigger: ATTCTCCGGCTCCTGTCTCAACTTCAGCACCAGCTC...AGAAAGCTGTGTCCCAGTTCTTTTCTGTAAGGCCTCCTTCAGGCTTATCCCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS-3UTR CAA 90 bp | AACAAACAAAGGACAGTACCCACCAACCTCAACGGGAGCTCTTCACAGCACTGTATGGTCTGTCCTTCCTaGAAGCCTAAATCCAACTTG | + |
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Preference number: 5 (lower is better) Translates to: NKQRTVPTNLNGSSSQHCMVCPS*KPKSNL Trigger: CAAGTTGGATTTAGGCTTCAAGGAAGGACAGACCAT...ACAGTGCTGTGAAGAGCTCCCGTTGAGGTTGGTGGGTACTGTCCTTTGTTTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS CAA 90 bp | TTGGCTGTAATATTCCCAATACTCAATTTGATGGTCTGTCCTTCCTaGAAGCCTAAATCCAACTTGGGACGATTATCCATTTCCTGTGAT | + |
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Preference number: 6 (lower is better) Translates to: LAVIFPILNLMVCPS*KPKSNLGRLSISCD Trigger: ATCACAGGAAATGGATAATCGTCCCAAGTTGGATTTAGGCTTCAAGGAAGGACAGACCATCAAATTGAGTATTGGGAATATTACAGCCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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| CDS CAA 72 bp | ATATTCCCAATACTCAATTTGATGGTCTGTCCTTCCTaGAAGCCTAAATCCAACTTGGGACGATTATCCATT | + |
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Preference number: 6 (lower is better) Translates to: IFPILNLMVCPS*KPKSNLGRLSI Trigger: AATGGATAATCGTCCCAAGTTGGATTTAGGCTTCAAGGAAGGACAGACCATCAAATTGAGTATTGGGAATAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032477.6 |
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