Pregenerated sensors for NDUFV2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024099Ensembl transcript IDs: ENSMUST00000143987.9
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAAGCAGGGCTACAGAATGAGATAGCAAACATAAATGGAATACTTTaGGAAAATTCTCTTACCGGTAGTACTGATAGGGAGGTCTTACCA | + |
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Preference number: 1 (lower is better) Translates to: QAGLQNEIANINGIL*ENSLTGSTDREVLP Trigger: TGGTAAGACCTCCCTATCAGTACTACCGGTAAGAGAATTTTCTCAAAGTATTCCATTTATGTTTGCTATCTCATTCTGTAGCCCTGCTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143987.9 |
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| 3UTR CAA 90 bp | ACCACAATCCCAGAACTTGAGAGGCAGAAGCAAAACTACCCAAAGTaGAAGGCCAGCCTGGTAAACATACAAGCAGGGCTACAGAATGAG | + |
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Preference number: 2 (lower is better) Translates to: TTIPELERQKQNYPK*KASLVNIQAGLQNE Trigger: CTCATTCTGTAGCCCTGCTTGTATGTTTACCAGGCTGGCCTTCAACTTTGGGTAGTTTTGCTTCTGCCTCTCAAGTTCTGGGATTGTGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143987.9 |
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| 3UTR-3UTR TCA 90 bp | GCTTCCAGTGTTAAAAATATAGCCAAAGATGGCCAAACCATGCCTCAAACGACACACAATCCCAGAACTTaGGAGGCAGAAGCAAAACTA | + |
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Preference number: 2 (lower is better) Translates to: ASSVKNIAKDGQTMPQTTHNPRT*EAEAKL Trigger: TAGTTTTGCTTCTGCCTCTCAAGTTCTGGGATTGTG...TGTCGTTTGAGGCATGGTTTGGCCATCTTTGGCTATATTTTTAACACTGGAAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000143987.9 |
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| 3UTR-3UTR CCA 90 bp | TTTACCACAATCCCAGAACTTGAGAGGCAGAAGCAAAACTACCCAAAGTTGAAGCTGATAAAAATGACATaGCTCTATGAATGGGCAACA | + |
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Preference number: 2 (lower is better) Translates to: FTTIPELERQKQNYPKLKLIKMT*LYEWAT Trigger: TGTTGCCCATTCATAGAGCCATGTCATTTTTATCAG...CTTCAACTTTGGGTAGTTTTGCTTCTGCCTCTCAAGTTCTGGGATTGTGGTAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000143987.9 |
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| CDS-3UTR GCA 90 bp | GCCAGCCTGGTAAACATACAAGCAGGGCTACAGAATGAGATAGCAAACATAAATCCTCCAGCACCATTGTaGACTGCTGTCTTATGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: ASLVNIQAGLQNEIANINPPAPL*TAVLCK Trigger: TTTGCATAAGACAGCAGTGCACAATGGTGCTGGAGG...ATTTATGTTTGCTATCTCATTCTGTAGCCCTGCTTGTATGTTTACCAGGCTGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143987.9 |
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| CDS-3UTR TCA 90 bp | GCTTCCAGTGTTAAAAATATAGCCAAAGATGGCCAAACCATGCCTCAAACGACAATTCCAAGCTTTCTCTaGAGGGTCTCCAATATGCTG | + |
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Preference number: 4 (lower is better) Translates to: ASSVKNIAKDGQTMPQTTIPSFL*RVSNML Trigger: CAGCATATTGGAGACCCTTCAGAGAAAGCTTGGAAT...TGTCGTTTGAGGCATGGTTTGGCCATCTTTGGCTATATTTTTAACACTGGAAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000143987.9 |
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| CDS-3UTR CCA 90 bp | TGTTGTTTTGACATAATATTTAGCAGCTGCAAGTTACTAGATTACTGCCAGGATGCCACTCCTTGGCCCTaGTTTGGGAACTTTTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: CCFDIIFSSCKLLDYCQDATPWP*FGNFSS Trigger: GCTGGAAAAGTTCCCAAACCAGGGCCAAGGAGTGGC...ATCCTGGCAGTAATCTAGTAACTTGCAGCTGCTAAATATTATGTCAAAACAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143987.9 |
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| CDS-3UTR CCA 90 bp | TGTTGTTTTGACATAATATTTAGCAGCTGCAAGTTACTAGATTACTGCCAGGATGAAGCGGCCACTCCTTaGCCCTGGTTTGGGAACTTT | + |
|
Preference number: 4 (lower is better) Translates to: CCFDIIFSSCKLLDYCQDEAATP*PWFGNF Trigger: AAAGTTCCCAAACCAGGGCCAAGGAGTGGCCGCTTC...ATCCTGGCAGTAATCTAGTAACTTGCAGCTGCTAAATATTATGTCAAAACAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143987.9 |
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| CDS-3UTR GCA 90 bp | GCCAGCCTGGTAAACATACAAGCAGGGCTACAGAATGAGATAGCAAACATAAATAGCACCATTGTGCACTaGTGTCTTATGCAAATTCCT | + |
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Preference number: 4 (lower is better) Translates to: ASLVNIQAGLQNEIANINSTIVH*CLMQIP Trigger: AGGAATTTGCATAAGACAGCAGTGCACAATGGTGCT...ATTTATGTTTGCTATCTCATTCTGTAGCCCTGCTTGTATGTTTACCAGGCTGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143987.9 |
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| CDS-3UTR GCA 90 bp | AATTCTCTTACCGGTAGTACTGATAGGGAGGTCTTACCAGTCAGAAACTTCAGTTCAGGAGTATCTCTATaGACAAATAAGGCTCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: NSLTGSTDREVLPVRNFSSGVSL*TNKAPP Trigger: TGGAGGAGCCTTATTTGTGCATAGAGATACTCCTGA...ACTGAAGTTTCTGACTGGTAAGACCTCCCTATCAGTACTACCGGTAAGAGAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143987.9 |
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| CDS-3UTR GCA 90 bp | TGTTGTTTTGACATAATATTTAGCAGCTGCAAGTTACTAGATTACTGCCAGGATCTTATGCAAATTCCTTaGATGTCTTCCCCACTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: CCFDIIFSSCKLLDYCQDLMQIP*MSSPLS Trigger: GCTCAGTGGGGAAGACATGCAAGGAATTTGCATAAG...ATCCTGGCAGTAATCTAGTAACTTGCAGCTGCTAAATATTATGTCAAAACAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143987.9 |
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| CDS-3UTR CAA 90 bp | AGGCAGAAGCAAAACTACCCAAAGTTGAAGGCCAGCCTGGTAAACATACAAGCAAGAAGCGGCCACTCCTaGGCCCTGGTTTGGGAACTT | + |
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Preference number: 5 (lower is better) Translates to: RQKQNYPKLKASLVNIQARSGHS*ALVWEL Trigger: AAGTTCCCAAACCAGGGCCAAGGAGTGGCCGCTTCT...TGCTTGTATGTTTACCAGGCTGGCCTTCAACTTTGGGTAGTTTTGCTTCTGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143987.9 |
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| CDS-3UTR CAA 90 bp | TCCAGTGTTAAAAATATAGCCAAAGATGGCCAAACCATGCCTCAAACGACAAAATCTTATGCAAATTCCTaGCATGTCTTCCCCACTGAG | + |
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Preference number: 5 (lower is better) Translates to: SSVKNIAKDGQTMPQTTKSYANS*HVFPTE Trigger: CTCAGTGGGGAAGACATGCAAGGAATTTGCATAAGA...TTTTGTCGTTTGAGGCATGGTTTGGCCATCTTTGGCTATATTTTTAACACTGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000143987.9 |
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