Pregenerated sensors for NDUFS6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021606Ensembl transcript IDs: ENSMUST00000022097.6, ENSMUST00000147407.2, ENSMUST00000222930.2, ENSMUST00000223293.2
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTAGAAACTCCCATGAAAACACCAGGCAGGCTGAACTTTGAGCTATaGCTGTTAACTGGGACACCCAGAGAGCCAGTGCGGATGTCTGGG | + |
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Preference number: 1 (lower is better) Translates to: LETPMKTPGRLNFEL*LLTGTPREPVRMSG Trigger: CCCAGACATCCGCACTGGCTCTCTGGGTGTCCCAGTTAACAGTCATAGCTCAAAGTTCAGCCTGCCTGGTGTTTTCATGGGAGTTTCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223293.2 |
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| 3UTR TCA 90 bp | CTGTCAACTAGAAACTCCCATGAAAACACCAGGCAGGCTGAACTTTaGGCTATGACTGTTAACTGGGACACCCAGAGAGCCAGTGCGGAT | + |
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Preference number: 1 (lower is better) Translates to: LSTRNSHENTRQAEL*AMTVNWDTQRASAD Trigger: ATCCGCACTGGCTCTCTGGGTGTCCCAGTTAACAGTCATAGCTCAAAGTTCAGCCTGCCTGGTGTTTTCATGGGAGTTTCTAGTTGACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223293.2 |
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| 3UTR-3UTR CCA 90 bp | GCCCAGGGCACCACCGCCTCCATCGCAGGCTATGATGCGGTGCTCCACCTCATTCCATTCACAGAGCAGTaGCCTCACACAGAACACCCA | + |
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Preference number: 2 (lower is better) Translates to: AQGTTASIAGYDAVLHLIPFTEQ*PHTEHP Trigger: TGGGTGTTCTGTGTGAGGCCACTGCTCTGTGAATGG...AATGAGGTGGAGCACCGCATCATAGCCTGCGATGGAGGCGGTGGTGCCCTGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147407.2 |
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| 3UTR-3UTR GCA 90 bp | CTTGGGGTGGCCCAGGGCACCACCGCCTCCATCGCAGGCTATGATGCGGTGCTCATTCACAGGCTGTTGTaGTATCAAATCAATGGCAAA | + |
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Preference number: 2 (lower is better) Translates to: LGVAQGTTASIAGYDAVLIHRLL*YQINGK Trigger: TTTGCCATTGATTTGATAGCACAACAGCCTGTGAAT...GAGCACCGCATCATAGCCTGCGATGGAGGCGGTGGTGCCCTGGGCCACCCCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147407.2 |
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| 3UTR-3UTR TCA 90 bp | TTTGTCCAAGTTTATGTACACCTTGGGGTGGCCCAGGGCACCACCGCCTCCATCTCATTCACCTCTTTCTaGCGATCTACAAAACGAACC | + |
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Preference number: 2 (lower is better) Translates to: FVQVYVHLGVAQGTTASISFTSF*RSTKRT Trigger: GGTTCGTTTTGTAGATCGTCAGAAAGAGGTGAATGA...GATGGAGGCGGTGGTGCCCTGGGCCACCCCAAGGTGTACATAAACTTGGACAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147407.2 |
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| 3UTR-3UTR CCA 90 bp | TGTCCAAGTTTATGTACACCTTGGGGTGGCCCAGGGCACCACCGCCTCCATCGCGTGCTATCAAATCAATaGCAAAGTTCTCATTCACCT | + |
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Preference number: 2 (lower is better) Translates to: CPSLCTPWGGPGHHRLHRVLSNQ*QSSHSP Trigger: AGGTGAATGAGAACTTTGCCATTGATTTGATAGCAC...GCGATGGAGGCGGTGGTGCCCTGGGCCACCCCAAGGTGTACATAAACTTGGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147407.2 |
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| 3UTR-3UTR CCA 90 bp | GGAAGAAACAACTCACTATCCATGGTGGGAGCATCCTTTATTCAAAACAAGGGACCATTCACAGAGCAGTaGCCTCACACAGAACACCCA | + |
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Preference number: 2 (lower is better) Translates to: GRNNSLSMVGASFIQNKGPFTEQ*PHTEHP Trigger: TGGGTGTTCTGTGTGAGGCCACTGCTCTGTGAATGG...TCCCTTGTTTTGAATAAAGGATGCTCCCACCATGGATAGTGAGTTGTTTCTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223293.2 |
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| 3UTR-3UTR TCA 90 bp | AACAACTCACTATCCATGGTGGGAGCATCCTTTATTCAAAACAAGGGACACCATAAACACCAGGCAGGCTaGACTTTGAGCTATGACTGT | + |
|
Preference number: 2 (lower is better) Translates to: NNSLSMVGASFIQNKGHHKHQAG*TLSYDC Trigger: ACAGTCATAGCTCAAAGTTCAGCCTGCCTGGTGTTT...ATGGTGTCCCTTGTTTTGAATAAAGGATGCTCCCACCATGGATAGTGAGTTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223293.2 |
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| 3UTR-3UTR CCA 90 bp | GAAAATCAGGTTGAACTTGAAATACACTGTCAACTAGAAACTCCCATGAAAACAGCTATGACTGTTAACTaGGACACCCAGAGAGCCAGT | + |
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Preference number: 2 (lower is better) Translates to: ENQVELEIHCQLETPMKTAMTVN*DTQRAS Trigger: ACTGGCTCTCTGGGTGTCCCAGTTAACAGTCATAGC...TGTTTTCATGGGAGTTTCTAGTTGACAGTGTATTTCAAGTTCAACCTGATTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223293.2 |
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| 3UTR TCA 72 bp | GGTGGCCCAGGGCACCACCGCCTCCATCGCAGGCTATaGTGCGGTGCTCCACCTCATTCACAGGCTGTTGTG | + |
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Preference number: 3 (lower is better) Translates to: GGPGHHRLHRRL*CGAPPHSQAVV Trigger: CACAACAGCCTGTGAATGAGGTGGAGCACCGCATCATAGCCTGCGATGGAGGCGGTGGTGCCCTGGGCCACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147407.2 |
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| 3UTR TCA 72 bp | GACCAGGACACAGCCCACACTAGTGATGGTGCTGCTTaGACTGCAGGCCGCAGTAGCCACATGTCCCCGTTT | + |
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Preference number: 3 (lower is better) Translates to: DQDTAHTSDGAA*TAGRSSHMSPF Trigger: AAACGGGGACATGTGGCTACTGCGGCCTGCAGTTCAAGCAGCACCATCACTAGTGTGGGCTGTGTCCTGGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000147407.2 ENSMUST00000223293.2 |
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| 3UTR-3UTR CAA 90 bp | TGTCCAAGTTTATGTACACCTTGGGGTGGCCCAGGGCACCACCGCCTCCATCGCCTCATTCACAGGCTGTaGTGCTATCAAATCAATGGC | + |
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Preference number: 3 (lower is better) Translates to: CPSLCTPWGGPGHHRLHRLIHRL*CYQING Trigger: GCCATTGATTTGATAGCACAACAGCCTGTGAATGAG...GCGATGGAGGCGGTGGTGCCCTGGGCCACCCCAAGGTGTACATAAACTTGGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147407.2 |
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| 3UTR TCA 72 bp | CCCATGAAAACACCAGGCAGGCTGAACTTTGAGCTATaGCTGTTAACTGGGACACCCAGAGAGCCAGTGCGG | + |
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Preference number: 3 (lower is better) Translates to: PMKTPGRLNFEL*LLTGTPREPVR Trigger: CCGCACTGGCTCTCTGGGTGTCCCAGTTAACAGTCATAGCTCAAAGTTCAGCCTGCCTGGTGTTTTCATGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223293.2 |
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| 3UTR TCA 72 bp | AGAAACTCCCATGAAAACACCAGGCAGGCTGAACTTTaGGCTATGACTGTTAACTGGGACACCCAGAGAGCC | + |
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Preference number: 3 (lower is better) Translates to: RNSHENTRQAEL*AMTVNWDTQRA Trigger: GGCTCTCTGGGTGTCCCAGTTAACAGTCATAGCTCAAAGTTCAGCCTGCCTGGTGTTTTCATGGGAGTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223293.2 |
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| 3UTR CCA 72 bp | CTTTATTCAAAACAAGGGACACCATTCACAGAGCAGTaGCCTCACACAGAACACCCAGCGTGGAGATGTTCC | + |
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Preference number: 3 (lower is better) Translates to: LYSKQGTPFTEQ*PHTEHPAWRCS Trigger: GGAACATCTCCACGCTGGGTGTTCTGTGTGAGGCCACTGCTCTGTGAATGGTGTCCCTTGTTTTGAATAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000022097.6 ENSMUST00000147407.2 ENSMUST00000222930.2 ENSMUST00000223293.2 |
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| 3UTR GCA 72 bp | TATGATGCGGTGCTCCACCTCATTCACAGGCTGTTGTaGTATCAAATCAATGGCAAAGTTCTCATTCACCTC | + |
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Preference number: 3 (lower is better) Translates to: YDAVLHLIHRLL*YQINGKVLIHL Trigger: GAGGTGAATGAGAACTTTGCCATTGATTTGATAGCACAACAGCCTGTGAATGAGGTGGAGCACCGCATCATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147407.2 |
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| CDS-3UTR CCA 90 bp | GTTTCTTTGTCCAAGTTTATGTACACCTTGGGGTGGCCCAGGGCACCACCGCCTCTTGGGTTCCAGGCATaGCGGGCGCGGCCGTTACCT | + |
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Preference number: 4 (lower is better) Translates to: VSLSKFMYTLGWPRAPPPLGFQA*RARPLP Trigger: AGGTAACGGCCGCGCCCGCCATGCCTGGAACCCAAG...AGGCGGTGGTGCCCTGGGCCACCCCAAGGTGTACATAAACTTGGACAAAGAAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147407.2 |
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| CDS-3UTR CCA 90 bp | TTTTTGTTTCTTTGTCCAAGTTTATGTACACCTTGGGGTGGCCCAGGGCACCACGGCGCGGCCGTTACCTaGCCGGTATGCGTGATCTTT | + |
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Preference number: 4 (lower is better) Translates to: FLFLCPSLCTPWGGPGHHGAAVT*PVCVIF Trigger: AAAGATCACGCATACCGGCCAGGTAACGGCCGCGCC...GTGGTGCCCTGGGCCACCCCAAGGTGTACATAAACTTGGACAAAGAAACAAAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147407.2 |
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| CDS-3UTR CCA 90 bp | CTGTTAACTGGGACACCCAGAGAGCCAGTGCGGATGTCTGGGAGGGAAGGTGAATTTTCATCATACACCTaGCCGGTATGCGTGATCTTT | + |
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Preference number: 4 (lower is better) Translates to: LLTGTPREPVRMSGREGEFSSYT*PVCVIF Trigger: AAAGATCACGCATACCGGCCAGGTGTATGATGAAAA...TTCACCTTCCCTCCCAGACATCCGCACTGGCTCTCTGGGTGTCCCAGTTAACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223293.2 |
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| CDS-3UTR CCA 90 bp | AACAACTCACTATCCATGGTGGGAGCATCCTTTATTCAAAACAAGGGACACCATATGTACACCTTGGGGTaGCCCAGGGCACCACCGCCT | + |
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Preference number: 4 (lower is better) Translates to: NNSLSMVGASFIQNKGHHMYTLG*PRAPPP Trigger: AGGCGGTGGTGCCCTGGGCCACCCCAAGGTGTACAT...ATGGTGTCCCTTGTTTTGAATAAAGGATGCTCCCACCATGGATAGTGAGTTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223293.2 |
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| CDS-3UTR GCA 90 bp | CTGTTAACTGGGACACCCAGAGAGCCAGTGCGGATGTCTGGGAGGGAAGGTGAAATTCACAGGCTGTTGTaGTATCAAATCAATGGCAAA | + |
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Preference number: 4 (lower is better) Translates to: LLTGTPREPVRMSGREGEIHRLL*YQINGK Trigger: TTTGCCATTGATTTGATAGCACAACAGCCTGTGAAT...TTCACCTTCCCTCCCAGACATCCGCACTGGCTCTCTGGGTGTCCCAGTTAACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223293.2 |
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| CDS-3UTR CCA 90 bp | CTGTTAACTGGGACACCCAGAGAGCCAGTGCGGATGTCTGGGAGGGAAGGTGAAGTGCTATCAAATCAATaGCAAAGTTCTCATTCACCT | + |
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Preference number: 4 (lower is better) Translates to: LLTGTPREPVRMSGREGEVLSNQ*QSSHSP Trigger: AGGTGAATGAGAACTTTGCCATTGATTTGATAGCAC...TTCACCTTCCCTCCCAGACATCCGCACTGGCTCTCTGGGTGTCCCAGTTAACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223293.2 |
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| CDS-3UTR CCA 90 bp | GGAAGAAACAACTCACTATCCATGGTGGGAGCATCCTTTATTCAAAACAAGGGAAGTTTATGTACACCTTaGGGTGGCCCAGGGCACCAC | + |
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Preference number: 4 (lower is better) Translates to: GRNNSLSMVGASFIQNKGSLCTP*GGPGHH Trigger: GTGGTGCCCTGGGCCACCCCAAGGTGTACATAAACT...TCCCTTGTTTTGAATAAAGGATGCTCCCACCATGGATAGTGAGTTGTTTCTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223293.2 |
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| 3UTR CAA 72 bp | GGCTATGATGCGGTGCTCCACCTCATTCACAGGCTGTaGTGCTATCAAATCAATGGCAAAGTTCTCATTCAC | + |
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Preference number: 4 (lower is better) Translates to: GYDAVLHLIHRL*CYQINGKVLIH Trigger: GTGAATGAGAACTTTGCCATTGATTTGATAGCACAACAGCCTGTGAATGAGGTGGAGCACCGCATCATAGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147407.2 |
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| CDS-3UTR TCA 90 bp | GAAAATCAGGTTGAACTTGAAATACACTGTCAACTAGAAACTCCCATGAAAACATCATTCACCTCTTTCTaGCGATCTACAAAACGAACC | + |
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Preference number: 4 (lower is better) Translates to: ENQVELEIHCQLETPMKTSFTSF*RSTKRT Trigger: GGTTCGTTTTGTAGATCGTCAGAAAGAGGTGAATGA...TGTTTTCATGGGAGTTTCTAGTTGACAGTGTATTTCAAGTTCAACCTGATTTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000223293.2 |
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| CDS-3UTR CAA 90 bp | GGAAGAAACAACTCACTATCCATGGTGGGAGCATCCTTTATTCAAAACAAGGGAAAGTTTATGTACACCTaGGGGTGGCCCAGGGCACCA | + |
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Preference number: 5 (lower is better) Translates to: GRNNSLSMVGASFIQNKGKFMYT*GWPRAP Trigger: TGGTGCCCTGGGCCACCCCAAGGTGTACATAAACTT...TCCCTTGTTTTGAATAAAGGATGCTCCCACCATGGATAGTGAGTTGTTTCTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223293.2 |
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| CDS-3UTR CAA 90 bp | GGAAGAAACAACTCACTATCCATGGTGGGAGCATCCTTTATTCAAAACAAGGGACTCATTCACAGGCTGTaGTGCTATCAAATCAATGGC | + |
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Preference number: 5 (lower is better) Translates to: GRNNSLSMVGASFIQNKGLIHRL*CYQING Trigger: GCCATTGATTTGATAGCACAACAGCCTGTGAATGAG...TCCCTTGTTTTGAATAAAGGATGCTCCCACCATGGATAGTGAGTTGTTTCTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223293.2 |
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| CDS CCA 72 bp | TCTTGGGTTCCAGGCATGGCGGGCGCGGCCGTTACCTaGCCGGTATGCGTGATCTTTTCCCCGCTCGGCGAC | + |
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Preference number: 6 (lower is better) Translates to: SWVPGMAGAAVT*PVCVIFSPLGD Trigger: GTCGCCGAGCGGGGAAAAGATCACGCATACCGGCCAGGTAACGGCCGCGCCCGCCATGCCTGGAACCCAAGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147407.2 |
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