Pregenerated sensors for NDUFS5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028648Ensembl transcript IDs: ENSMUST00000030401.14, ENSMUST00000106206.8, ENSMUST00000106207.8, ENSMUST00000137312.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTAAATATTCTCTCCAGGGGAAAACAGAGCATGACAGCGGCCTCCAGCTGCCCCTCCCTGCCCGAATGGTaGGGTGGAGGGGTGTATTTG | + |
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Preference number: 4 (lower is better) Translates to: LNILSRGKQSMTAASSCPSLPEW*GGGVYL Trigger: CAAATACACCCCTCCACCTCACCATTCGGGCAGGGA...GGGGCAGCTGGAGGCCGCTGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR GCA 90 bp | TCCTTAAATATTCTCTCCAGGGGAAAACAGAGCATGACAGCGGCCTCCAGCTGCCTTAGGAACATAAAGTaGCGGTCCAGGCTGATGCCC | + |
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Preference number: 4 (lower is better) Translates to: SLNILSRGKQSMTAASSCLRNIK*RSRLMP Trigger: GGGCATCAGCCTGGACCGGCACTTTATGTTCCTAAG...GCAGCTGGAGGCCGCTGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR GCA 90 bp | TTAAATATTCTCTCCAGGGGAAAACAGAGCATGACAGCGGCCTCCAGCTGCCCCCATCGAACTCTATCTTaGACTCCTTTTTCGCCCGGG | + |
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Preference number: 4 (lower is better) Translates to: LNILSRGKQSMTAASSCPHRTLS*TPFSPG Trigger: CCCGGGCGAAAAAGGAGTGCAAGATAGAGTTCGATG...GGGGCAGCTGGAGGCCGCTGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR GCA 90 bp | TTCCTTAAATATTCTCTCCAGGGGAAAACAGAGCATGACAGCGGCCTCCAGCTGCCACTCTTTTTCAAATaGGTGGCACCGAGCGGCGTT | + |
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Preference number: 4 (lower is better) Translates to: FLKYSLQGKTEHDSGLQLPLFFK*VAPSGV Trigger: AACGCCGCTCGGTGCCACGCATTTGAAAAAGAGTGG...CAGCTGGAGGCCGCTGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAAGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR TCA 90 bp | TCCTTAAATATTCTCTCCAGGGGAAAACAGAGCATGACAGCGGCCTCCAGCTGCTCTCCCGCTGTTTCTTaGTATCATGCATTCGCCTCA | + |
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Preference number: 4 (lower is better) Translates to: SLNILSRGKQSMTAASSCSPAVS*YHAFAS Trigger: TGAGGCGAATGCATGATATCAAGAAACAGCGGGAGA...GCAGCTGGAGGCCGCTGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR GCA 90 bp | TTCCTTAAATATTCTCTCCAGGGGAAAACAGAGCATGACAGCGGCCTCCAGCTGCATCGAACTCTATCTTaGACTCCTTTTTCGCCCGGG | + |
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Preference number: 4 (lower is better) Translates to: FLKYSLQGKTEHDSGLQLHRTLS*TPFSPG Trigger: CCCGGGCGAAAAAGGAGTGCAAGATAGAGTTCGATG...CAGCTGGAGGCCGCTGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAAGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR GCA 90 bp | CTTAAATATTCTCTCCAGGGGAAAACAGAGCATGACAGCGGCCTCCAGCTGCCCGTGGAGGGGTGTATTTaGCCTCTTTCATTAGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LKYSLQGKTEHDSGLQLPVEGCI*PLSLAS Trigger: AGAAGCTAATGAAAGAGGGCAAATACACCCCTCCAC...GGGCAGCTGGAGGCCGCTGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR GCA 90 bp | TTAAATATTCTCTCCAGGGGAAAACAGAGCATGACAGCGGCCTCCAGCTGCCCCGTGGAGGGGTGTATTTaGCCTCTTTCATTAGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LNILSRGKQSMTAASSCPVEGCI*PLSLAS Trigger: AGAAGCTAATGAAAGAGGGCAAATACACCCCTCCAC...GGGGCAGCTGGAGGCCGCTGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR TCA 90 bp | AAGGAGCTTTCCTTAAATATTCTCTCCAGGGGAAAACAGAGCATGACAGCGGCCTCTCCCGCTGTTTCTTaGTATCATGCATTCGCCTCA | + |
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Preference number: 4 (lower is better) Translates to: KELSLNILSRGKQSMTAASPAVS*YHAFAS Trigger: TGAGGCGAATGCATGATATCAAGAAACAGCGGGAGA...GGCCGCTGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAAGGAAAGCTCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR TCA 90 bp | CTTAATGAAGGAGCTTTCCTTAAATATTCTCTCCAGGGGAAAACAGAGCATGACTCCCTGCCCGAATGGTaGGGTGGAGGGGTGTATTTG | + |
|
Preference number: 4 (lower is better) Translates to: LNEGAFLKYSLQGKTEHDSLPEW*GGGVYL Trigger: CAAATACACCCCTCCACCTCACCATTCGGGCAGGGA...GTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAAGGAAAGCTCCTTCATTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR GCA 90 bp | ATGAAGGAGCTTTCCTTAAATATTCTCTCCAGGGGAAAACAGAGCATGACAGCGCTTAGGAACATAAAGTaGCGGTCCAGGCTGATGCCC | + |
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Preference number: 4 (lower is better) Translates to: MKELSLNILSRGKQSMTALRNIK*RSRLMP Trigger: GGGCATCAGCCTGGACCGGCACTTTATGTTCCTAAG...CGCTGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAAGGAAAGCTCCTTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR TCA 90 bp | ATGAAGGAGCTTTCCTTAAATATTCTCTCCAGGGGAAAACAGAGCATGACAGCGTCTCCCGCTGTTTCTTaGTATCATGCATTCGCCTCA | + |
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Preference number: 4 (lower is better) Translates to: MKELSLNILSRGKQSMTASPAVS*YHAFAS Trigger: TGAGGCGAATGCATGATATCAAGAAACAGCGGGAGA...CGCTGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAAGGAAAGCTCCTTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR GCA 90 bp | TTAATGAAGGAGCTTTCCTTAAATATTCTCTCCAGGGGAAAACAGAGCATGACACTTAGGAACATAAAGTaGCGGTCCAGGCTGATGCCC | + |
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Preference number: 4 (lower is better) Translates to: LMKELSLNILSRGKQSMTLRNIK*RSRLMP Trigger: GGGCATCAGCCTGGACCGGCACTTTATGTTCCTAAG...TGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAAGGAAAGCTCCTTCATTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR GCA 90 bp | TACTTAATGAAGGAGCTTTCCTTAAATATTCTCTCCAGGGGAAAACAGAGCATGCCACTCTTTTTCAAATaGGTGGCACCGAGCGGCGTT | + |
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Preference number: 4 (lower is better) Translates to: YLMKELSLNILSRGKQSMPLFFK*VAPSGV Trigger: AACGCCGCTCGGTGCCACGCATTTGAAAAAGAGTGG...CATGCTCTGTTTTCCCCTGGAGAGAATATTTAAGGAAAGCTCCTTCATTAAGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR GCA 90 bp | TTAATGAAGGAGCTTTCCTTAAATATTCTCTCCAGGGGAAAACAGAGCATGACACATCGAACTCTATCTTaGACTCCTTTTTCGCCCGGG | + |
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Preference number: 4 (lower is better) Translates to: LMKELSLNILSRGKQSMTHRTLS*TPFSPG Trigger: CCCGGGCGAAAAAGGAGTGCAAGATAGAGTTCGATG...TGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAAGGAAAGCTCCTTCATTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR GCA 90 bp | CTTAATGAAGGAGCTTTCCTTAAATATTCTCTCCAGGGGAAAACAGAGCATGACGTGGAGGGGTGTATTTaGCCTCTTTCATTAGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LNEGAFLKYSLQGKTEHDVEGCI*PLSLAS Trigger: AGAAGCTAATGAAAGAGGGCAAATACACCCCTCCAC...GTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAAGGAAAGCTCCTTCATTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR CAA 90 bp | TCCTTAAATATTCTCTCCAGGGGAAAACAGAGCATGACAGCGGCCTCCAGCTGCTTCTCCCGCTGTTTCTaGATATCATGCATTCGCCTC | + |
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Preference number: 5 (lower is better) Translates to: SLNILSRGKQSMTAASSCFSRCF*ISCIRL Trigger: GAGGCGAATGCATGATATCAAGAAACAGCGGGAGAA...GCAGCTGGAGGCCGCTGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR CAA 90 bp | AAGGAGCTTTCCTTAAATATTCTCTCCAGGGGAAAACAGAGCATGACAGCGGCCTTCTCCCGCTGTTTCTaGATATCATGCATTCGCCTC | + |
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Preference number: 5 (lower is better) Translates to: KELSLNILSRGKQSMTAAFSRCF*ISCIRL Trigger: GAGGCGAATGCATGATATCAAGAAACAGCGGGAGAA...GGCCGCTGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAAGGAAAGCTCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS GCA 90 bp | TATTTGCCCTCTTTCATTAGCTTCTCCCGCTGTTTCTTGATATCATaGATTCGCCTCATCGTTTTGTACCGAAGCAAGCACTCTTCGAAG | + |
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Preference number: 5 (lower is better) Translates to: YLPSFISFSRCFLIS*IRLIVLYRSKHSSK Trigger: CTTCGAAGAGTGCTTGCTTCGGTACAAAACGATGAGGCGAATGCATGATATCAAGAAACAGCGGGAGAAGCTAATGAAAGAGGGCAAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS-3UTR CAA 90 bp | TTAATGAAGGAGCTTTCCTTAAATATTCTCTCCAGGGGAAAACAGAGCATGACATTCTCCCGCTGTTTCTaGATATCATGCATTCGCCTC | + |
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Preference number: 5 (lower is better) Translates to: LMKELSLNILSRGKQSMTFSRCF*ISCIRL Trigger: GAGGCGAATGCATGATATCAAGAAACAGCGGGAGAA...TGTCATGCTCTGTTTTCCCCTGGAGAGAATATTTAAGGAAAGCTCCTTCATTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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| CDS GCA 72 bp | TCTTTCATTAGCTTCTCCCGCTGTTTCTTGATATCATaGATTCGCCTCATCGTTTTGTACCGAAGCAAGCAC | + |
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Preference number: 6 (lower is better) Translates to: SFISFSRCFLIS*IRLIVLYRSKH Trigger: GTGCTTGCTTCGGTACAAAACGATGAGGCGAATGCATGATATCAAGAAACAGCGGGAGAAGCTAATGAAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 ENSMUST00000137312.2 |
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| CDS TCA 72 bp | ATTTGCCCTCTTTCATTAGCTTCTCCCGCTGTTTCTTaGTATCATGCATTCGCCTCATCGTTTTGTACCGAA | + |
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Preference number: 6 (lower is better) Translates to: ICPLSLASPAVS*YHAFASSFCTE Trigger: TTCGGTACAAAACGATGAGGCGAATGCATGATATCAAGAAACAGCGGGAGAAGCTAATGAAAGAGGGCAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 ENSMUST00000137312.2 |
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| CDS CAA 72 bp | TATTTGCCCTCTTTCATTAGCTTCTCCCGCTGTTTCTaGATATCATGCATTCGCCTCATCGTTTTGTACCGA | + |
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Preference number: 6 (lower is better) Translates to: YLPSFISFSRCF*ISCIRLIVLYR Trigger: TCGGTACAAAACGATGAGGCGAATGCATGATATCAAGAAACAGCGGGAGAAGCTAATGAAAGAGGGCAAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030401.14 ENSMUST00000106206.8 ENSMUST00000106207.8 |
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