Pregenerated sensors for NDUFS4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021764Ensembl transcript IDs: ENSMUST00000022286.8, ENSMUST00000225035.2, ENSMUST00000225707.2, ENSMUST00000225978.3, ENSMUST00000232101.2
Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAAAGGTGGACTAGAAGGTGGACATCTGGGAGGCAGAAAGAATTCTaGGATAAAGCCAGGCAAGGAAGATTCTCCCAGGAAGAGGTGAGG | + |
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Preference number: 1 (lower is better) Translates to: KRWTRRWTSGRQKEF*DKARQGRFSQEEVR Trigger: CCTCACCTCTTCCTGGGAGAATCTTCCTTGCCTGGCTTTATCCCAGAATTCTTTCTGCCTCCCAGATGTCCACCTTCTAGTCCACCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
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| 3UTR GCA 90 bp | TTTCTCATCAACTGTTATAAGCTGTGTGTCCCGAGTCTGGTTGTCTaGCAGCTTCCAAGTGGATGTGCTCAACAACCTTGCTGCCTGAGA | + |
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Preference number: 1 (lower is better) Translates to: FLINCYKLCVPSLVV*QLPSGCAQQPCCLR Trigger: TCTCAGGCAGCAAGGTTGTTGAGCACATCCACTTGGAAGCTGGCAGACAACCAGACTCGGGACACACAGCTTATAACAGTTGATGAGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225707.2 |
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| 3UTR TCA 90 bp | CTCAGAATTCAGCTCACCAAGGTGCACTCTATGCTGTCTGTCCAGTaGAGACATCAATCCATTTCTCAGAATTCAGCTCAAGGTGCGCTC | + |
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Preference number: 1 (lower is better) Translates to: LRIQLTKVHSMLSVQ*RHQSISQNSAQGAL Trigger: GAGCGCACCTTGAGCTGAATTCTGAGAAATGGATTGATGTCTTCACTGGACAGACAGCATAGAGTGCACCTTGGTGAGCTGAATTCTGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
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| 3UTR GCA 90 bp | TGTCCAGTGAAGACATCAATCCATTTCTCAGAATTCAGCTCAAGGTaGGCTCTATGCTGTCTGTCCAGTGAAGACATCAATCCATTTCTC | + |
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Preference number: 1 (lower is better) Translates to: CPVKTSIHFSEFSSR*ALCCLSSEDINPFL Trigger: GAGAAATGGATTGATGTCTTCACTGGACAGACAGCATAGAGCGCACCTTGAGCTGAATTCTGAGAAATGGATTGATGTCTTCACTGGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
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| 3UTR CCA 90 bp | ACACAACAATATGGTCATGACATAAAGGAGCATTTTATCACAAATTaGGAGGTTCCCACAGGATCACAGCCTGCCTCCGACAGAATCACT | + |
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Preference number: 1 (lower is better) Translates to: TQQYGHDIKEHFITN*EVPTGSQPASDRIT Trigger: AGTGATTCTGTCGGAGGCAGGCTGTGATCCTGTGGGAACCTCCCAATTTGTGATAAAATGCTCCTTTATGTCATGACCATATTGTTGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
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| 3UTR CCA 90 bp | ATGCATCACTTGTCAATTAAAAAGCCTATGGCCTATAGGAAAAGGTaGACTAGAAGGTGGACATCTGGGAGGCAGAAAGAATTCTGGGAT | + |
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Preference number: 1 (lower is better) Translates to: MHHLSIKKPMAYRKR*TRRWTSGRQKEFWD Trigger: ATCCCAGAATTCTTTCTGCCTCCCAGATGTCCACCTTCTAGTCCACCTTTTCCTATAGGCCATAGGCTTTTTAATTGACAAGTGATGCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
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| 3UTR TCA 90 bp | AATCTCCAGTCAGACAGGAAATCGTTGGCTATAAGGGAATTAAGTTaGGAGTCATTGGGTTGTAGTACAGCCATGTCCTTTTCTACCCAT | + |
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Preference number: 1 (lower is better) Translates to: NLQSDRKSLAIRELS*ESLGCSTAMSFSTH Trigger: ATGGGTAGAAAAGGACATGGCTGTACTACAACCCAATGACTCTCAACTTAATTCCCTTATAGCCAACGATTTCCTGTCTGACTGGAGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
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| 3UTR GCA 90 bp | AAGACATCAATCCATTTCTCAGAATTCAGCTCAAGGTGCGCTCTATaGTGTCTGTCCAGTGAAGACATCAATCCATTTCTCAGAATTCAG | + |
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Preference number: 1 (lower is better) Translates to: KTSIHFSEFSSRCAL*CLSSEDINPFLRIQ Trigger: CTGAATTCTGAGAAATGGATTGATGTCTTCACTGGACAGACAGCATAGAGCGCACCTTGAGCTGAATTCTGAGAAATGGATTGATGTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
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| 3UTR CCA 90 bp | TTGTTCTTTTGTTCCAAGAAAAGTTTGCACCATAAGACTTGGACTTaGGTTTCGGAACCTTCTTCTCTTCCACATCATAGCTCCATCCGT | + |
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Preference number: 1 (lower is better) Translates to: LFFCSKKSLHHKTWT*VSEPSSLPHHSSIR Trigger: ACGGATGGAGCTATGATGTGGAAGAGAAGAAGGTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAAACTTTTCTTGGAACAAAAGAACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 |
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| 3UTR CCA 90 bp | ACACTCTTGTTCTTTTGTTCCAAGAAAAGTTTGCACCATAAGACTTaGACTTGGGTTTCGGAACCTTCTTCTCTTCCACATCATAGCTCC | + |
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Preference number: 1 (lower is better) Translates to: TLLFFCSKKSLHHKT*TWVSEPSSLPHHSS Trigger: GGAGCTATGATGTGGAAGAGAAGAAGGTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAAACTTTTCTTGGAACAAAAGAACAAGAGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 |
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| 3UTR GCA 90 bp | TTATTGCGAGCAGGAACAAAGATTCTGACCTTTCTGGTTTTGATGTaGTCTTCTGGAACACCAGTTAAAGTTGTGATATCCAGTTTCTCA | + |
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Preference number: 1 (lower is better) Translates to: LLRAGTKILTFLVLM*SSGTPVKVVISSFS Trigger: TGAGAAACTGGATATCACAACTTTAACTGGTGTTCCAGAAGAGCACATCAAAACCAGAAAGGTCAGAATCTTTGTTCCTGCTCGCAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225707.2 |
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| 3UTR-3UTR CCA 90 bp | TTGGAGAGGGGGTCAGCGGTTGATGCCCAACCCATCAAAGGATTTTCCCATCTCCTGCCAGCTTCCAAGTaGATGTGCTCAACAACCTTG | + |
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Preference number: 2 (lower is better) Translates to: LERGSAVDAQPIKGFSHLLPASK*MCSTTL Trigger: CAAGGTTGTTGAGCACATCCACTTGGAAGCTGGCAG...GAGATGGGAAAATCCTTTGATGGGTTGGGCATCAACCGCTGACCCCCTCTCCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000225707.2 |
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| 3UTR CAA 90 bp | TCCAGTTTCTCATCAACTGTTATAAGCTGTGTGTCCCGAGTCTGGTaGTCTGCCAGCTTCCAAGTGGATGTGCTCAACAACCTTGCTGCC | + |
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Preference number: 2 (lower is better) Translates to: SSFSSTVISCVSRVW*SASFQVDVLNNLAA Trigger: GGCAGCAAGGTTGTTGAGCACATCCACTTGGAAGCTGGCAGACAACCAGACTCGGGACACACAGCTTATAACAGTTGATGAGAAACTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225707.2 |
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| 3UTR-3UTR TCA 90 bp | AAAAGCCTATGGCCTATAGGAAAAGGTGGACTAGAAGGTGGACATCTGGGAGGCTCTCCCAGGAAGAGGTaGGGAAACAGACATATGGTA | + |
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Preference number: 2 (lower is better) Translates to: KSLWPIGKGGLEGGHLGGSPRKR*GNRHMV Trigger: TACCATATGTCTGTTTCCTCACCTCTTCCTGGGAGA...GCCTCCCAGATGTCCACCTTCTAGTCCACCTTTTCCTATAGGCCATAGGCTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
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| 3UTR-3UTR CCA 90 bp | GGGTCAGCGGTTGATGCCCAACCCATCAAAGGATTTTCCCATCTCTCTCTGGTACATAAGACTTGGACTTaGGTTTCGGAACCTTCTTCT | + |
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Preference number: 2 (lower is better) Translates to: GSAVDAQPIKGFSHLSLVHKTWT*VSEPSS Trigger: AGAAGAAGGTTCCGAAACCCAAGTCCAAGTCTTATG...TACCAGAGAGAGATGGGAAAATCCTTTGATGGGTTGGGCATCAACCGCTGACCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 |
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| 3UTR-3UTR TCA 90 bp | AAAAGCCTATGGCCTATAGGAAAAGGTGGACTAGAAGGTGGACATCTGGGAGGCGTCCTTTTCTACCCATaGCAAAAGAATTTCCCTGAG | + |
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Preference number: 2 (lower is better) Translates to: KSLWPIGKGGLEGGHLGGVLFYP*QKNFPE Trigger: CTCAGGGAAATTCTTTTGTCATGGGTAGAAAAGGAC...GCCTCCCAGATGTCCACCTTCTAGTCCACCTTTTCCTATAGGCCATAGGCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
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| 3UTR-3UTR TCA 90 bp | TGCTGTCTGTCCAGTGAAGACATCAATCCATTTCTCAGAATTCAGCTCACCAAGATGCTGTCTGTCCAGTaGAGACATCAGTCCATTTCT | + |
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Preference number: 2 (lower is better) Translates to: CCLSSEDINPFLRIQLTKMLSVQ*RHQSIS Trigger: AGAAATGGACTGATGTCTTCACTGGACAGACAGCAT...CTTGGTGAGCTGAATTCTGAGAAATGGATTGATGTCTTCACTGGACAGACAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
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| 3UTR-3UTR CCA 90 bp | GCAAAGGCAATTGCATCTTCTTTGGCACTGAAGGTCAGAACCATGTTGGAGAGGGAGGTGCATTATCCATaGACTATAAATAGTGCACAG | + |
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Preference number: 2 (lower is better) Translates to: AKAIASSLALKVRTMLEREVHYP*TINSAQ Trigger: CTGTGCACTATTTATAGTCCATGGATAATGCACCTC...CCTCTCCAACATGGTTCTGACCTTCAGTGCCAAAGAAGATGCAATTGCCTTTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 |
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| 3UTR-3UTR GCA 90 bp | TTATTTACTCCAGACTGCATGTTATTGCGAGCAGGAACAAAGATTCTGACCTTTGCTTCCAAGTGGATGTaGTCAACAACCTTGCTGCCT | + |
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Preference number: 2 (lower is better) Translates to: LFTPDCMLLRAGTKILTFASKWM*STTLLP Trigger: AGGCAGCAAGGTTGTTGAGCACATCCACTTGGAAGC...AAAGGTCAGAATCTTTGTTCCTGCTCGCAATAACATGCAGTCTGGAGTAAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225707.2 |
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| 3UTR-3UTR CCA 90 bp | CACCATAAGACTTGGACTTGGGTTTCGGAACCTTCTTCTCTTCCACATCATAGCGAGGTGCATTATCCATaGACTATAAATAGTGCACAG | + |
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Preference number: 2 (lower is better) Translates to: HHKTWTWVSEPSSLPHHSEVHYP*TINSAQ Trigger: CTGTGCACTATTTATAGTCCATGGATAATGCACCTC...GCTATGATGTGGAAGAGAAGAAGGTTCCGAAACCCAAGTCCAAGTCTTATGGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 |
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| 3UTR-3UTR CCA 90 bp | GTTATTTACTCCAGACTGCATGTTATTGCGAGCAGGAACAAAGATTCTGACCTTTTGCACCATAAGACTTaGACTTGGGTTTCGGAACCT | + |
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Preference number: 2 (lower is better) Translates to: VIYSRLHVIASRNKDSDLLHHKT*TWVSEP Trigger: AGGTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAA...AAGGTCAGAATCTTTGTTCCTGCTCGCAATAACATGCAGTCTGGAGTAAATAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 |
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| 3UTR-3UTR CCA 90 bp | AGAGATGTAGCCAGCTCCAACCTATTTTGTAGACACTCTTGTTCTTTTGTTCCATTGCACCATAAGACTTaGACTTGGGTTTCGGAACCT | + |
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Preference number: 2 (lower is better) Translates to: RDVASSNLFCRHSCSFVPLHHKT*TWVSEP Trigger: AGGTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAA...TGGAACAAAAGAACAAGAGTGTCTACAAAATAGGTTGGAGCTGGCTACATCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 ENSMUST00000232101.2 |
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| 3UTR CAA 90 bp | TGCATGTTATTGCGAGCAGGAACAAAGATTCTGACCTTTCTGGTTTaGATGTGCTCTTCTGGAACACCAGTTAAAGTTGTGATATCCAGT | + |
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Preference number: 2 (lower is better) Translates to: CMLLRAGTKILTFLV*MCSSGTPVKVVISS Trigger: ACTGGATATCACAACTTTAACTGGTGTTCCAGAAGAGCACATCAAAACCAGAAAGGTCAGAATCTTTGTTCCTGCTCGCAATAACATGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225707.2 |
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| 3UTR-3UTR TCA 90 bp | AGCTATGGTCTAGTCAGAGAAAAGCCTAGCAATATGGCCAAGGTATCTGTAAATTGCATGGCATTGACTTaGGTGGCTATAAAAAGCAAC | + |
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Preference number: 2 (lower is better) Translates to: SYGLVREKPSNMAKVSVNCMALT*VAIKSN Trigger: GTTGCTTTTTATAGCCACTCAAGTCAATGCCATGCA...ATTTACAGATACCTTGGCCATATTGCTAGGCTTTTCTCTGACTAGACCATAGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
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| 3UTR-3UTR GCA 90 bp | AAGAAAAGTTTGCACCATAAGACTTGGACTTGGGTTTCGGAACCTTCTTCTCTTTTTCTGGTTTTGATGTaGTCTTCTGGAACACCAGTT | + |
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Preference number: 2 (lower is better) Translates to: KKSLHHKTWTWVSEPSSLFLVLM*SSGTPV Trigger: AACTGGTGTTCCAGAAGAGCACATCAAAACCAGAAA...AAGAGAAGAAGGTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAAACTTTTCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000225707.2 |
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| 3UTR-3UTR CCA 90 bp | TGTTCTTTTGTTCCAAGAAAAGTTTGCACCATAAGACTTGGACTTGGGTTTCGGGAGGTGCATTATCCATaGACTATAAATAGTGCACAG | + |
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Preference number: 2 (lower is better) Translates to: CSFVPRKVCTIRLGLGFREVHYP*TINSAQ Trigger: CTGTGCACTATTTATAGTCCATGGATAATGCACCTC...CCGAAACCCAAGTCCAAGTCTTATGGTGCAAACTTTTCTTGGAACAAAAGAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 ENSMUST00000232101.2 |
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| 3UTR-3UTR CCA 90 bp | ATGGACAACTGTAGAGAGAATATTTTATGTGTTGTACGGATGCATCACTTGTCAGCCTATAGGAAAAGGTaGACTAGAAGGTGGACATCT | + |
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Preference number: 2 (lower is better) Translates to: MDNCRENILCVVRMHHLSAYRKR*TRRWTS Trigger: AGATGTCCACCTTCTAGTCCACCTTTTCCTATAGGC...TGACAAGTGATGCATCCGTACAACACATAAAATATTCTCTCTACAGTTGTCCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
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| 3UTR-3UTR CCA 90 bp | GTAGCCAGCTCCAACCTATTTTGTAGACACTCTTGTTCTTTTGTTCCAAGAAAACATAAGACTTGGACTTaGGTTTCGGAACCTTCTTCT | + |
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Preference number: 2 (lower is better) Translates to: VASSNLFCRHSCSFVPRKHKTWT*VSEPSS Trigger: AGAAGAAGGTTCCGAAACCCAAGTCCAAGTCTTATG...TTTTCTTGGAACAAAAGAACAAGAGTGTCTACAAAATAGGTTGGAGCTGGCTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 ENSMUST00000232101.2 |
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| 3UTR-3UTR CCA 90 bp | CCTTTTCTGTTCATAAACACCGAGGAAATACAAATCTCCAGTCAGACAGGAAATGAGGTGCATTATCCATaGACTATAAATAGTGCACAG | + |
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Preference number: 2 (lower is better) Translates to: PFLFINTEEIQISSQTGNEVHYP*TINSAQ Trigger: CTGTGCACTATTTATAGTCCATGGATAATGCACCTC...ATTTCCTGTCTGACTGGAGATTTGTATTTCCTCGGTGTTTATGAACAGAAAAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
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| 3UTR-3UTR TCA 90 bp | GGAAGAACGGGCTTAACTTGTACAGATAAATCCTTTTCTGTTCATAAACACCGAATAAGGGAATTAAGTTaGGAGTCATTGGGTTGTAGT | + |
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Preference number: 2 (lower is better) Translates to: GRTGLTCTDKSFSVHKHRIRELS*ESLGCS Trigger: ACTACAACCCAATGACTCTCAACTTAATTCCCTTAT...TCGGTGTTTATGAACAGAAAAGGATTTATCTGTACAAGTTAAGCCCGTTCTTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
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| 3UTR GCA 72 bp | CCCGAGTCTGGTTGTCTGCCAGCTTCCAAGTGGATGTaGTCAACAACCTTGCTGCCTGAGAGCGTAGCTCCG | + |
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Preference number: 3 (lower is better) Translates to: PESGCLPASKWM*STTLLPESVAP Trigger: CGGAGCTACGCTCTCAGGCAGCAAGGTTGTTGAGCACATCCACTTGGAAGCTGGCAGACAACCAGACTCGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225707.2 |
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| 3UTR TCA 72 bp | CACAGGATCACAGCCTGCCTCCGACAGAATCACTGGTaGCTCAGCTCACCAAGGTGCGCTCTATGCTGTCTG | + |
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Preference number: 3 (lower is better) Translates to: HRITACLRQNHW*LSSPRCALCCL Trigger: CAGACAGCATAGAGCGCACCTTGGTGAGCTGAGTCACCAGTGATTCTGTCGGAGGCAGGCTGTGATCCTGTG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
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| 3UTR CCA 72 bp | GTGTGTCCCGAGTCTGGTTGTCTGCCAGCTTCCAAGTaGATGTGCTCAACAACCTTGCTGCCTGAGAGCGTA | + |
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Preference number: 3 (lower is better) Translates to: VCPESGCLPASK*MCSTTLLPESV Trigger: TACGCTCTCAGGCAGCAAGGTTGTTGAGCACATCCACTTGGAAGCTGGCAGACAACCAGACTCGGGACACAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225707.2 |
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| 3UTR TCA 72 bp | TCAGCTCACCAGGGTGCGCTCCATGCTGTCTGTCCATaGAGACATCAGTCCATTTCTCAGAATTCAGCTCAC | + |
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Preference number: 3 (lower is better) Translates to: SAHQGALHAVCP*RHQSISQNSAH Trigger: GTGAGCTGAATTCTGAGAAATGGACTGATGTCTTCATGGACAGACAGCATGGAGCGCACCCTGGTGAGCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
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| 3UTR-3UTR CAA 90 bp | AGTTTGCACCATAAGACTTGGACTTGGGTTTCGGAACCTTCTTCTCTTCCACATAGAGGGGGTCAGCGGTaGATGCCCAACCCATCAAAG | + |
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Preference number: 3 (lower is better) Translates to: SLHHKTWTWVSEPSSLPHRGGQR*MPNPSK Trigger: CTTTGATGGGTTGGGCATCAACCGCTGACCCCCTCT...ATGTGGAAGAGAAGAAGGTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAAACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 |
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| 3UTR TCA 72 bp | CAGCTCACCAAGGTGCGCTCTATGCTGTCTGTCCAGTaGAGACATCAGTCCATTTCTCAGAATTCAGCTCAC | + |
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Preference number: 3 (lower is better) Translates to: QLTKVRSMLSVQ*RHQSISQNSAH Trigger: GTGAGCTGAATTCTGAGAAATGGACTGATGTCTTCACTGGACAGACAGCATAGAGCGCACCTTGGTGAGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
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| 3UTR GCA 72 bp | CATTTCTCAGAATTCAGCTCACCAGGGTGCGCTCCATaGTGTCTGTCCATGAAGACATCAGTCCATTTCTCA | + |
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Preference number: 3 (lower is better) Translates to: HFSEFSSPGCAP*CLSMKTSVHFS Trigger: TGAGAAATGGACTGATGTCTTCATGGACAGACAGCATGGAGCGCACCCTGGTGAGCTGAATTCTGAGAAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
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| 3UTR GCA 72 bp | ACATCAATCCATTTCTCAGAATTCAGCTCACCAGGGTaGGCTCCATGCTGTCTGTCCATGAAGACATCAGTC | + |
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Preference number: 3 (lower is better) Translates to: TSIHFSEFSSPG*APCCLSMKTSV Trigger: GACTGATGTCTTCATGGACAGACAGCATGGAGCGCACCCTGGTGAGCTGAATTCTGAGAAATGGATTGATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
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| 3UTR-3UTR CAA 90 bp | GCAAAGGCAATTGCATCTTCTTTGGCACTGAAGGTCAGAACCATGTTGGAGAGGCCAGACTGCATGTTATaGCGAGCAGGAACAAAGATT | + |
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Preference number: 3 (lower is better) Translates to: AKAIASSLALKVRTMLERPDCML*RAGTKI Trigger: AATCTTTGTTCCTGCTCGCAATAACATGCAGTCTGG...CCTCTCCAACATGGTTCTGACCTTCAGTGCCAAAGAAGATGCAATTGCCTTTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 |
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| 3UTR-3UTR CAA 90 bp | CACCATAAGACTTGGACTTGGGTTTCGGAACCTTCTTCTCTTCCACATCATAGCGCAATTGCATCTTCTTaGGCACTGAAGGTCAGAACC | + |
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Preference number: 3 (lower is better) Translates to: HHKTWTWVSEPSSLPHHSAIASS*ALKVRT Trigger: GGTTCTGACCTTCAGTGCCAAAGAAGATGCAATTGC...GCTATGATGTGGAAGAGAAGAAGGTTCCGAAACCCAAGTCCAAGTCTTATGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 |
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| 3UTR GCA 72 bp | CATTTCTCAGAATTCAGCTCACCAAGGTGCGCTCTATaGTGTCTGTCCAGTGAAGACATCAGTCCATTTCTC | + |
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Preference number: 3 (lower is better) Translates to: HFSEFSSPRCAL*CLSSEDISPFL Trigger: GAGAAATGGACTGATGTCTTCACTGGACAGACAGCATAGAGCGCACCTTGGTGAGCTGAATTCTGAGAAATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
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| 3UTR CCA 72 bp | AAGATTCTCCCAGGAAGAGGTGAGGAAACAGACATATaGTACCTGAGCACAAGTAATCAGCCACATGGCAGA | + |
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Preference number: 3 (lower is better) Translates to: KILPGRGEETDI*YLSTSNQPHGR Trigger: TCTGCCATGTGGCTGATTACTTGTGCTCAGGTACCATATGTCTGTTTCCTCACCTCTTCCTGGGAGAATCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
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| 3UTR CCA 72 bp | TATGGTCATGACATAAAGGAGCATTTTATCACAAATTaGGAGGTTCCCACAGGATCACAGCCTGCCTCCGAC | + |
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Preference number: 3 (lower is better) Translates to: YGHDIKEHFITN*EVPTGSQPASD Trigger: GTCGGAGGCAGGCTGTGATCCTGTGGGAACCTCCCAATTTGTGATAAAATGCTCCTTTATGTCATGACCATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
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| 3UTR-3UTR CAA 90 bp | AAGAAAAGTTTGCACCATAAGACTTGGACTTGGGTTTCGGAACCTTCTTCTCTTATGTGCTCAACAACCTaGCTGCCTGAGAGCGTAGCT | + |
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Preference number: 3 (lower is better) Translates to: KKSLHHKTWTWVSEPSSLMCSTT*LPESVA Trigger: AGCTACGCTCTCAGGCAGCAAGGTTGTTGAGCACAT...AAGAGAAGAAGGTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAAACTTTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225707.2 |
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| 3UTR TCA 72 bp | CAGCTCACCAAGGTGCACTCTATGCTGTCTGTCCAGTaGAGACATCAATCCATTTCTCAGAATTCAGCTCAA | + |
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Preference number: 3 (lower is better) Translates to: QLTKVHSMLSVQ*RHQSISQNSAQ Trigger: TTGAGCTGAATTCTGAGAAATGGATTGATGTCTTCACTGGACAGACAGCATAGAGTGCACCTTGGTGAGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
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| 3UTR GCA 72 bp | ACATCAATCCATTTCTCAGAATTCAGCTCACCAAGGTaGGCTCTATGCTGTCTGTCCAGTGAAGACATCAGT | + |
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Preference number: 3 (lower is better) Translates to: TSIHFSEFSSPR*ALCCLSSEDIS Trigger: ACTGATGTCTTCACTGGACAGACAGCATAGAGCGCACCTTGGTGAGCTGAATTCTGAGAAATGGATTGATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
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| 3UTR TCA 72 bp | GTAAGGATGGCTTGGAGTTTATGCATGGCATTGACTTaGGTGGCTATAAAAAGCAACCAGAAACCACCTAGG | + |
|
Preference number: 3 (lower is better) Translates to: VRMAWSLCMALT*VAIKSNQKPPR Trigger: CCTAGGTGGTTTCTGGTTGCTTTTTATAGCCACTCAAGTCAATGCCATGCATAAACTCCAAGCCATCCTTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| 3UTR GCA 72 bp | ATCCATTTCTCAGAATTCAGCTCAAGGTGCGCTCTATaGTGTCTGTCCAGTGAAGACATCAATCCATTTCTC | + |
|
Preference number: 3 (lower is better) Translates to: IHFSEFSSRCAL*CLSSEDINPFL Trigger: GAGAAATGGATTGATGTCTTCACTGGACAGACAGCATAGAGCGCACCTTGAGCTGAATTCTGAGAAATGGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
||
| 3UTR-3UTR CAA 90 bp | TTTGGGAGCATGGGACGGGGAAGAACGGGCTTAACTTGTACAGATAAATCCTTTTCAGACAGGAAATCGTaGGCTATAAGGGAATTAAGT | + |
|
Preference number: 3 (lower is better) Translates to: FGSMGRGRTGLTCTDKSFSDRKS*AIRELS Trigger: ACTTAATTCCCTTATAGCCAACGATTTCCTGTCTGA...AAAGGATTTATCTGTACAAGTTAAGCCCGTTCTTCCCCGTCCCATGCTCCCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| 3UTR GCA 72 bp | AAGACATCAATCCATTTCTCAGAATTCAGCTCAAGGTaGGCTCTATGCTGTCTGTCCAGTGAAGACATCAAT | + |
|
Preference number: 3 (lower is better) Translates to: KTSIHFSEFSSR*ALCCLSSEDIN Trigger: ATTGATGTCTTCACTGGACAGACAGCATAGAGCGCACCTTGAGCTGAATTCTGAGAAATGGATTGATGTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
||
| 3UTR CCA 72 bp | TTGTCAATTAAAAAGCCTATGGCCTATAGGAAAAGGTaGACTAGAAGGTGGACATCTGGGAGGCAGAAAGAA | + |
|
Preference number: 3 (lower is better) Translates to: LSIKKPMAYRKR*TRRWTSGRQKE Trigger: TTCTTTCTGCCTCCCAGATGTCCACCTTCTAGTCCACCTTTTCCTATAGGCCATAGGCTTTTTAATTGACAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| 3UTR CCA 72 bp | TGTTCCAAGAAAAGTTTGCACCATAAGACTTGGACTTaGGTTTCGGAACCTTCTTCTCTTCCACATCATAGC | + |
|
Preference number: 3 (lower is better) Translates to: CSKKSLHHKTWT*VSEPSSLPHHS Trigger: GCTATGATGTGGAAGAGAAGAAGGTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAAACTTTTCTTGGAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 |
||
| 3UTR-3UTR CAA 90 bp | AGCTATGGTCTAGTCAGAGAAAAGCCTAGCAATATGGCCAAGGTATCTGTAAATTTCCAGGCACTCACATaGGTAAACTCTAAGTGCTCT | + |
|
Preference number: 3 (lower is better) Translates to: SYGLVREKPSNMAKVSVNFQALT*VNSKCS Trigger: AGAGCACTTAGAGTTTACCAATGTGAGTGCCTGGAA...ATTTACAGATACCTTGGCCATATTGCTAGGCTTTTCTCTGACTAGACCATAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| 3UTR TCA 72 bp | CCATGTCCTTTTCTACCCATGACAAAAGAATTTCCCTaGGAGTGGTTTAGTAAGGATGGCTTGGAGTTTATG | + |
|
Preference number: 3 (lower is better) Translates to: PCPFLPMTKEFP*EWFSKDGLEFM Trigger: CATAAACTCCAAGCCATCCTTACTAAACCACTCTCAGGGAAATTCTTTTGTCATGGGTAGAAAAGGACATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| 3UTR TCA 72 bp | TCAGACAGGAAATCGTTGGCTATAAGGGAATTAAGTTaGGAGTCATTGGGTTGTAGTACAGCCATGTCCTTT | + |
|
Preference number: 3 (lower is better) Translates to: SDRKSLAIRELS*ESLGCSTAMSF Trigger: AAAGGACATGGCTGTACTACAACCCAATGACTCTCAACTTAATTCCCTTATAGCCAACGATTTCCTGTCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| 3UTR GCA 72 bp | GCAGGAACAAAGATTCTGACCTTTCTGGTTTTGATGTaGTCTTCTGGAACACCAGTTAAAGTTGTGATATCC | + |
|
Preference number: 3 (lower is better) Translates to: AGTKILTFLVLM*SSGTPVKVVIS Trigger: GGATATCACAACTTTAACTGGTGTTCCAGAAGAGCACATCAAAACCAGAAAGGTCAGAATCTTTGTTCCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225707.2 |
||
| 3UTR CCA 72 bp | TTGTACGGATGCATCACTTGTCAATTAAAAAGCCTATaGCCTATAGGAAAAGGTGGACTAGAAGGTGGACAT | + |
|
Preference number: 3 (lower is better) Translates to: LYGCITCQLKSL*PIGKGGLEGGH Trigger: ATGTCCACCTTCTAGTCCACCTTTTCCTATAGGCCATAGGCTTTTTAATTGACAAGTGATGCATCCGTACAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| 3UTR-3UTR CAA 90 bp | TCTTTTGTTCCAAGAAAAGTTTGCACCATAAGACTTGGACTTGGGTTTCGGAACTGTTCCAAGAAAAGTTaGCACCATAAGACTTGGACT | + |
|
Preference number: 3 (lower is better) Translates to: SFVPRKVCTIRLGLGFRNCSKKS*HHKTWT Trigger: AGTCCAAGTCTTATGGTGCAAACTTTTCTTGGAACA...GTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAAACTTTTCTTGGAACAAAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 ENSMUST00000232101.2 |
||
| 3UTR CCA 72 bp | TTCTTTTGTTCCAAGAAAAGTTTGCACCATAAGACTTaGACTTGGGTTTCGGAACCTTCTTCTCTTCCACAT | + |
|
Preference number: 3 (lower is better) Translates to: FFCSKKSLHHKT*TWVSEPSSLPH Trigger: ATGTGGAAGAGAAGAAGGTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAAACTTTTCTTGGAACAAAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 |
||
| 3UTR TCA 72 bp | CACAACTGTATGTACATCAACACAACAATATGGTCATaGCATAAAGGAGCATTTTATCACAAATTGGGAGGT | + |
|
Preference number: 3 (lower is better) Translates to: HNCMYINTTIWS*HKGAFYHKLGG Trigger: ACCTCCCAATTTGTGATAAAATGCTCCTTTATGTCATGACCATATTGTTGTGTTGATGTACATACAGTTGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
||
| 3UTR GCA 72 bp | ACAACTGTAGAGAGAATATTTTATGTGTTGTACGGATaGATCACTTGTCAATTAAAAAGCCTATGGCCTATA | + |
|
Preference number: 3 (lower is better) Translates to: TTVERIFYVLYG*ITCQLKSLWPI Trigger: TATAGGCCATAGGCTTTTTAATTGACAAGTGATGCATCCGTACAACACATAAAATATTCTCTCTACAGTTGT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| 3UTR CAA 72 bp | ATTGCATCTTCTTTGGCACTGAAGGTCAGAACCATGTaGGAGAGGGGGTCAGCGGTTGATGCCCAACCCATC | + |
|
Preference number: 4 (lower is better) Translates to: IASSLALKVRTM*ERGSAVDAQPI Trigger: GATGGGTTGGGCATCAACCGCTGACCCCCTCTCCAACATGGTTCTGACCTTCAGTGCCAAAGAAGATGCAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 |
||
| 3UTR CAA 72 bp | TCATCAACTGTTATAAGCTGTGTGTCCCGAGTCTGGTaGTCTGCCAGCTTCCAAGTGGATGTGCTCAACAAC | + |
|
Preference number: 4 (lower is better) Translates to: SSTVISCVSRVW*SASFQVDVLNN Trigger: GTTGTTGAGCACATCCACTTGGAAGCTGGCAGACAACCAGACTCGGGACACACAGCTTATAACAGTTGATGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225707.2 |
||
| CDS-3UTR TCA 90 bp | CAGAATTCAGCTCACCAAGGTGCACTCTATGCTGTCTGTCCAGTGAAGACATCAATGCTGTCTGTCCAGTaGAGACATCAGTCCATTTCT | + |
|
Preference number: 4 (lower is better) Translates to: QNSAHQGALYAVCPVKTSMLSVQ*RHQSIS Trigger: AGAAATGGACTGATGTCTTCACTGGACAGACAGCAT...TGATGTCTTCACTGGACAGACAGCATAGAGTGCACCTTGGTGAGCTGAATTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
||
| CDS-3UTR GCA 90 bp | GGAGGCAGAAAGAATTCTGGGATAAAGCCAGGCAAGGAAGATTCTCCCAGGAAGCAGACTGCATGTTATTaGGAGCAGGAACAAAGATTC | + |
|
Preference number: 4 (lower is better) Translates to: GGRKNSGIKPGKEDSPRKQTACY*EQEQRF Trigger: GAATCTTTGTTCCTGCTCGCAATAACATGCAGTCTG...CTTCCTGGGAGAATCTTCCTTGCCTGGCTTTATCCCAGAATTCTTTCTGCCTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| CDS-3UTR GCA 90 bp | CTGGGAGGCAGAAAGAATTCTGGGATAAAGCCAGGCAAGGAAGATTCTCCCAGGTTATTTACTCCAGACTaGATGTTATTGCGAGCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: LGGRKNSGIKPGKEDSPRLFTPD*MLLRAG Trigger: TCCTGCTCGCAATAACATGCAGTCTGGAGTAAATAA...CCTGGGAGAATCTTCCTTGCCTGGCTTTATCCCAGAATTCTTTCTGCCTCCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| CDS-3UTR GCA 90 bp | AAAAGCCTATGGCCTATAGGAAAAGGTGGACTAGAAGGTGGACATCTGGGAGGCTTTCTGGTTTTGATGTaGTCTTCTGGAACACCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: KSLWPIGKGGLEGGHLGGFLVLM*SSGTPV Trigger: AACTGGTGTTCCAGAAGAGCACATCAAAACCAGAAA...GCCTCCCAGATGTCCACCTTCTAGTCCACCTTTTCCTATAGGCCATAGGCTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| CDS-3UTR CCA 90 bp | TTTGTTCCAAGAAAAGTTTGCACCATAAGACTTGGACTTGGGTTTCGGAACCTTCTGCCAGCTTCCAAGTaGATGTGCTCAACAACCTGG | + |
|
Preference number: 4 (lower is better) Translates to: FVPRKVCTIRLGLGFRNLLPASK*MCSTTW Trigger: CCAGGTTGTTGAGCACATCCACTTGGAAGCTGGCAG...AAGGTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAAACTTTTCTTGGAACAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232101.2 |
||
| CDS-3UTR CCA 90 bp | GGAAGAACGGGCTTAACTTGTACAGATAAATCCTTTTCTGTTCATAAACACCGAAGGTCAGAACCATGTTaGAGAGGGGGTCAGCGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: GRTGLTCTDKSFSVHKHRRSEPC*RGGQRL Trigger: CAACCGCTGACCCCCTCTCCAACATGGTTCTGACCT...TCGGTGTTTATGAACAGAAAAGGATTTATCTGTACAAGTTAAGCCCGTTCTTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| CDS-3UTR CCA 90 bp | ACATCAATCCATTTCTCAGAATTCAGCTCACCAAGGTGCGCTCTATGCTGTCTGTCTATGCTGTCTGGATaGAACTCTACAGACGGAAAC | + |
|
Preference number: 4 (lower is better) Translates to: TSIHFSEFSSPRCALCCLSMLSG*NSTDGN Trigger: GTTTCCGTCTGTAGAGTTCCATCCAGACAGCATAGA...CAGACAGCATAGAGCGCACCTTGGTGAGCTGAATTCTGAGAAATGGATTGATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
||
| CDS-3UTR CCA 90 bp | GGAAGAACGGGCTTAACTTGTACAGATAAATCCTTTTCTGTTCATAAACACCGACTGCCAGCTTCCAAGTaGATGTGCTCAACAACCTGG | + |
|
Preference number: 4 (lower is better) Translates to: GRTGLTCTDKSFSVHKHRLPASK*MCSTTW Trigger: CCAGGTTGTTGAGCACATCCACTTGGAAGCTGGCAG...TCGGTGTTTATGAACAGAAAAGGATTTATCTGTACAAGTTAAGCCCGTTCTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| CDS-3UTR TCA 90 bp | TATATATTGAGACTGAGCCTTATTTTTGGGAGCATGGGACGGGGAAGAACGGGCCACCAGTTAAAGTTGTaGTATCCAGTTTCTCATCAA | + |
|
Preference number: 4 (lower is better) Translates to: YILRLSLIFGSMGRGRTGHQLKL*YPVSHQ Trigger: TTGATGAGAAACTGGATATCACAACTTTAACTGGTG...GCCCGTTCTTCCCCGTCCCATGCTCCCAAAAATAAGGCTCAGTCTCAATATATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| CDS-3UTR GCA 90 bp | TGTTCTTTTGTTCCAAGAAAAGTTTGCACCATAAGACTTGGACTTGGGTTTCGGCAGACTGCATGTTATTaGGAGCAGGAACAAAGATTC | + |
|
Preference number: 4 (lower is better) Translates to: CSFVPRKVCTIRLGLGFRQTACY*EQEQRF Trigger: GAATCTTTGTTCCTGCTCGCAATAACATGCAGTCTG...CCGAAACCCAAGTCCAAGTCTTATGGTGCAAACTTTTCTTGGAACAAAAGAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232101.2 |
||
| CDS-3UTR CCA 90 bp | TTAAGCTATGGTCTAGTCAGAGAAAAGCCTAGCAATATGGCCAAGGTATCTGTACATAAGACTTGGACTTaGGTTTCGGAACCTTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LSYGLVREKPSNMAKVSVHKTWT*VSEPSS Trigger: AGAAGAAGGTTCCGAAACCCAAGTCCAAGTCTTATG...TACAGATACCTTGGCCATATTGCTAGGCTTTTCTCTGACTAGACCATAGCTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| CDS-3UTR CCA 90 bp | CCTTTTCTGTTCATAAACACCGAGGAAATACAAATCTCCAGTCAGACAGGAAATTTGCACCATAAGACTTaGACTTGGGTTTCGGAACCT | + |
|
Preference number: 4 (lower is better) Translates to: PFLFINTEEIQISSQTGNLHHKT*TWVSEP Trigger: AGGTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAA...ATTTCCTGTCTGACTGGAGATTTGTATTTCCTCGGTGTTTATGAACAGAAAAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| CDS-3UTR TCA 90 bp | TCCAAGAAAAGTTTGCACCATAAGACTTGGACTTGGGTTTCGGAACCTTCTTCTCACCAGTTAAAGTTGTaGTATCCAGTTTCTCATCAA | + |
|
Preference number: 4 (lower is better) Translates to: SKKSLHHKTWTWVSEPSSHQLKL*YPVSHQ Trigger: TTGATGAGAAACTGGATATCACAACTTTAACTGGTG...AGAAGAAGGTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAAACTTTTCTTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232101.2 |
||
| CDS-3UTR GCA 90 bp | TTTGTTCCAAGAAAAGTTTGCACCATAAGACTTGGACTTGGGTTTCGGAACCTTTTTCTGGTTTTGATGTaGTCTTCTGGAACACCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: FVPRKVCTIRLGLGFRNLFLVLM*SSGTPV Trigger: AACTGGTGTTCCAGAAGAGCACATCAAAACCAGAAA...AAGGTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAAACTTTTCTTGGAACAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000232101.2 |
||
| CDS-3UTR GCA 90 bp | AGCTATGGTCTAGTCAGAGAAAAGCCTAGCAATATGGCCAAGGTATCTGTAAATTTCTGCAAAGGCAATTaGATCTTCTTTGGCACTGAA | + |
|
Preference number: 4 (lower is better) Translates to: SYGLVREKPSNMAKVSVNFCKGN*IFFGTE Trigger: TTCAGTGCCAAAGAAGATGCAATTGCCTTTGCAGAA...ATTTACAGATACCTTGGCCATATTGCTAGGCTTTTCTCTGACTAGACCATAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| CDS-3UTR CCA 90 bp | TTTGTGTTATTTACTCCAGACTGCATGTTATTGCGAGCAGGAACAAAGATTCTGAAAGTTGTGATATCCTaGATGGAACTCTACAGACGG | + |
|
Preference number: 4 (lower is better) Translates to: FVLFTPDCMLLRAGTKILKVVIS*MELYRR Trigger: CCGTCTGTAGAGTTCCATCCAGGATATCACAACTTT...CAGAATCTTTGTTCCTGCTCGCAATAACATGCAGTCTGGAGTAAATAACACAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225035.2 |
||
| 3UTR CAA 72 bp | CATTTCTTTGTGTTATTTACTCCAGACTGCATGTTATaGCGAGCAGGAACAAAGATTCTGACCTTTCTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: HFFVLFTPDCML*RAGTKILTFLV Trigger: AACCAGAAAGGTCAGAATCTTTGTTCCTGCTCGCAATAACATGCAGTCTGGAGTAAATAACACAAAGAAATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000225035.2 ENSMUST00000225707.2 |
||
| CDS GCA 90 bp | TTTCTCATCAACTGTTATAAGCTGTGTGTCCCGAGTCTGGTTGTCTaGCAGCTTCCAAGTGGATGTGCTCAACAACCTGGATGGAACTCT | + |
|
Preference number: 5 (lower is better) Translates to: FLINCYKLCVPSLVV*QLPSGCAQQPGWNS Trigger: AGAGTTCCATCCAGGTTGTTGAGCACATCCACTTGGAAGCTGGCAGACAACCAGACTCGGGACACACAGCTTATAACAGTTGATGAGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022286.8 ENSMUST00000232101.2 |
||
| CDS-3UTR CAA 90 bp | TTTGGGAGCATGGGACGGGGAAGAACGGGCTTAACTTGTACAGATAAATCCTTTGCAATTGCATCTTCTTaGGCACTGAAGGTCAGAACC | + |
|
Preference number: 5 (lower is better) Translates to: FGSMGRGRTGLTCTDKSFAIASS*ALKVRT Trigger: GGTTCTGACCTTCAGTGCCAAAGAAGATGCAATTGC...AAAGGATTTATCTGTACAAGTTAAGCCCGTTCTTCCCCGTCCCATGCTCCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| CDS-3UTR CAA 90 bp | GGTCTAGTCAGAGAAAAGCCTAGCAATATGGCCAAGGTATCTGTAAATATATATAGAGGGGGTCAGCGGTaGATGCCCAACCCATCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: GLVREKPSNMAKVSVNIYRGGQR*MPNPSK Trigger: CTTTGATGGGTTGGGCATCAACCGCTGACCCCCTCT...ATATATATTTACAGATACCTTGGCCATATTGCTAGGCTTTTCTCTGACTAGACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| CDS-3UTR CAA 90 bp | ATGGGACGGGGAAGAACGGGCTTAACTTGTACAGATAAATCCTTTTCTGTTCATCTGACCTTTCTGGTTTaGATGTGCTCTTCTGGAACA | + |
|
Preference number: 5 (lower is better) Translates to: MGRGRTGLTCTDKSFSVHLTFLV*MCSSGT Trigger: TGTTCCAGAAGAGCACATCAAAACCAGAAAGGTCAG...ATGAACAGAAAAGGATTTATCTGTACAAGTTAAGCCCGTTCTTCCCCGTCCCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| CDS-3UTR CAA 90 bp | TGTAGTACAGCCATGTCCTTTTCTACCCATGACAAAAGAATTTCCCTGAGAGTGCCAGACTGCATGTTATaGCGAGCAGGAACAAAGATT | + |
|
Preference number: 5 (lower is better) Translates to: CSTAMSFSTHDKRISLRVPDCML*RAGTKI Trigger: AATCTTTGTTCCTGCTCGCAATAACATGCAGTCTGG...CACTCTCAGGGAAATTCTTTTGTCATGGGTAGAAAAGGACATGGCTGTACTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| CDS-3UTR CAA 90 bp | TCTTTTGTTCCAAGAAAAGTTTGCACCATAAGACTTGGACTTGGGTTTCGGAACCTGACCTTTCTGGTTTaGATGTGCTCTTCTGGAACA | + |
|
Preference number: 5 (lower is better) Translates to: SFVPRKVCTIRLGLGFRNLTFLV*MCSSGT Trigger: TGTTCCAGAAGAGCACATCAAAACCAGAAAGGTCAG...GTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAAACTTTTCTTGGAACAAAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232101.2 |
||
| CDS-3UTR CAA 90 bp | TCTTTTGTTCCAAGAAAAGTTTGCACCATAAGACTTGGACTTGGGTTTCGGAACCCAGACTGCATGTTATaGCGAGCAGGAACAAAGATT | + |
|
Preference number: 5 (lower is better) Translates to: SFVPRKVCTIRLGLGFRNPDCML*RAGTKI Trigger: AATCTTTGTTCCTGCTCGCAATAACATGCAGTCTGG...GTTCCGAAACCCAAGTCCAAGTCTTATGGTGCAAACTTTTCTTGGAACAAAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232101.2 |
||
| CDS-3UTR CAA 90 bp | GTTCATAAACACCGAGGAAATACAAATCTCCAGTCAGACAGGAAATCGTTGGCTTGTTCCAAGAAAAGTTaGCACCATAAGACTTGGACT | + |
|
Preference number: 5 (lower is better) Translates to: VHKHRGNTNLQSDRKSLACSKKS*HHKTWT Trigger: AGTCCAAGTCTTATGGTGCAAACTTTTCTTGGAACA...AGCCAACGATTTCCTGTCTGACTGGAGATTTGTATTTCCTCGGTGTTTATGAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022286.8 |
||
| CDS CCA 72 bp | GTGTGTCCCGAGTCTGGTTGTCTGCCAGCTTCCAAGTaGATGTGCTCAACAACCTGGATGGAACTCTACAGA | + |
|
Preference number: 6 (lower is better) Translates to: VCPESGCLPASK*MCSTTWMELYR Trigger: TCTGTAGAGTTCCATCCAGGTTGTTGAGCACATCCACTTGGAAGCTGGCAGACAACCAGACTCGGGACACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022286.8 ENSMUST00000232101.2 |
||
| CDS CCA 72 bp | ATTCAGCTCACCAAGGTGCACTCTATGCTGTCTGGATaGAACTCTACAGACGGAAACGGCAGCTGTAGCCAT | + |
|
Preference number: 6 (lower is better) Translates to: IQLTKVHSMLSG*NSTDGNGSCSH Trigger: ATGGCTACAGCTGCCGTTTCCGTCTGTAGAGTTCCATCCAGACAGCATAGAGTGCACCTTGGTGAGCTGAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
||
| CDS CAA 90 bp | TCCAGTTTCTCATCAACTGTTATAAGCTGTGTGTCCCGAGTCTGGTaGTCTGCCAGCTTCCAAGTGGATGTGCTCAACAACCTGGATGGA | + |
|
Preference number: 6 (lower is better) Translates to: SSFSSTVISCVSRVW*SASFQVDVLNNLDG Trigger: TCCATCCAGGTTGTTGAGCACATCCACTTGGAAGCTGGCAGACAACCAGACTCGGGACACACAGCTTATAACAGTTGATGAGAAACTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022286.8 ENSMUST00000232101.2 |
||
| CDS GCA 72 bp | ACATCAGTCCATTTCTCAGAATTCAGCTCACCAAGGTaGACTCTATGCTGTCTGGATGGAACTCTACAGACG | + |
|
Preference number: 6 (lower is better) Translates to: TSVHFSEFSSPR*TLCCLDGTLQT Trigger: CGTCTGTAGAGTTCCATCCAGACAGCATAGAGTGCACCTTGGTGAGCTGAATTCTGAGAAATGGACTGATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225978.3 |
||