RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NDUFS3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000005510

Ensembl transcript IDs: ENSMUST00000005647.4

Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CTCCAAATGCTGAGAGCTGCTTGTGGGTCACATCACTCCGGGGTCTaGCAGTGGGGCGCTTGTCAGCCGCCGCGCTCTCCCTTCTTACGT +
Preference number: 5 (lower is better)
Translates to: LQMLRAACGSHHSGV*QWGACQPPRSPFLR
Trigger: ACGTAAGAAGGGAGAGCGCGGCGGCTGACAAGCGCCCCACTGTCAGACCCCGGAGTGATGTGACCCACAAGCAGCTCTCAGCATTTGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS GCA 90 bp GGCGATAGGCAGGGAAAGCCTCCCAGGGGCTGTTCAGGTCAAACTTaGGGAATTCTTGTGCCAGCTCCACTGGTTCAGCCACTACCCGCT +
Preference number: 5 (lower is better)
Translates to: GDRQGKPPRGCSGQT*GILVPAPLVQPLPA
Trigger: AGCGGGTAGTGGCTGAACCAGTGGAGCTGGCACAAGAATTCCGCAAGTTTGACCTGAACAGCCCCTGGGAGGCTTTCCCTGCCTATCGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS GCA 90 bp GAAAGCCTCCCAGGGGCTGTTCAGGTCAAACTTGCGGAATTCTTGTaGCAGCTCCACTGGTTCAGCCACTACCCGCTTTACCTCATCGTC +
Preference number: 5 (lower is better)
Translates to: ESLPGAVQVKLAEFL*QLHWFSHYPLYLIV
Trigger: GACGATGAGGTAAAGCGGGTAGTGGCTGAACCAGTGGAGCTGGCACAAGAATTCCGCAAGTTTGACCTGAACAGCCCCTGGGAGGCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS CCA 90 bp GGTAAGATTTCAGCCACATACTCTCCAAATGCTGAGAGCTGCTTGTaGGTCACATCACTCCGGGGTCTGACAGTGGGGCGCTTGTCAGCC +
Preference number: 5 (lower is better)
Translates to: GKISATYSPNAESCL*VTSLRGLTVGRLSA
Trigger: GGCTGACAAGCGCCCCACTGTCAGACCCCGGAGTGATGTGACCCACAAGCAGCTCTCAGCATTTGGAGAGTATGTGGCTGAAATCTTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS CCA 90 bp GGGGCTGTTCAGGTCAAACTTGCGGAATTCTTGTGCCAGCTCCACTaGTTCAGCCACTACCCGCTTTACCTCATCGTCGTAACGAAGCTC +
Preference number: 5 (lower is better)
Translates to: GAVQVKLAEFLCQLH*FSHYPLYLIVVTKL
Trigger: GAGCTTCGTTACGACGATGAGGTAAAGCGGGTAGTGGCTGAACCAGTGGAGCTGGCACAAGAATTCCGCAAGTTTGACCTGAACAGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS GCA 90 bp TACTTGGGTAAGATTTCAGCCACATACTCTCCAAATGCTGAGAGCTaGTTGTGGGTCACATCACTCCGGGGTCTGACAGTGGGGCGCTTG +
Preference number: 5 (lower is better)
Translates to: YLGKISATYSPNAES*LWVTSLRGLTVGRL
Trigger: CAAGCGCCCCACTGTCAGACCCCGGAGTGATGTGACCCACAAGCAGCTCTCAGCATTTGGAGAGTATGTGGCTGAAATCTTACCCAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS TCA 90 bp TCCACTGCCGTCAAGTCAGCCAAGGATTTGAATTGTGCATTGGTGTaGTCCCTGAGAAAAGTCAGCGTTGGGATGACTCCATCGGGATGG +
Preference number: 5 (lower is better)
Translates to: STAVKSAKDLNCALV*SLRKVSVGMTPSGW
Trigger: CCATCCCGATGGAGTCATCCCAACGCTGACTTTTCTCAGGGATCACACCAATGCACAATTCAAATCCTTGGCTGACTTGACGGCAGTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS TCA 90 bp CTACCCGCTTTACCTCATCGTCGTAACGAAGCTCAACATAGCCAGTaGGGGGAAAGTCTTTCCGGAAAGGATGTCCCTCGAAGCCATAAT +
Preference number: 5 (lower is better)
Translates to: LPALPHRRNEAQHSQ*GESLSGKDVPRSHN
Trigger: ATTATGGCTTCGAGGGACATCCTTTCCGGAAAGACTTTCCCCTCACTGGCTATGTTGAGCTTCGTTACGACGATGAGGTAAAGCGGGTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS GCA 90 bp AGTTGGGACATCCACTGCCGTCAAGTCAGCCAAGGATTTGAATTGTaGATTGGTGTGATCCCTGAGAAAAGTCAGCGTTGGGATGACTCC +
Preference number: 5 (lower is better)
Translates to: SWDIHCRQVSQGFEL*IGVIPEKSQRWDDS
Trigger: GGAGTCATCCCAACGCTGACTTTTCTCAGGGATCACACCAATGCACAATTCAAATCCTTGGCTGACTTGACGGCAGTGGATGTCCCAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS GCA 90 bp CGCGATGTGCACAGACACTATAGAGTCAATGGGTGTCAGCTCATCTaGATAGGTCTTCACACGAATCCTAGAGTTGAACCGCAGAGACAG +
Preference number: 5 (lower is better)
Translates to: RDVHRHYRVNGCQLI*IGLHTNPRVEPQRQ
Trigger: CTGTCTCTGCGGTTCAACTCTAGGATTCGTGTGAAGACCTATGCAGATGAGCTGACACCCATTGACTCTATAGTGTCTGTGCACATCGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS GCA 90 bp GTTGTAGACAATCTCAAAACGGTTCTGCCGAGTTGGGACATCCACTaGCGTCAAGTCAGCCAAGGATTTGAATTGTGCATTGGTGTGATC +
Preference number: 5 (lower is better)
Translates to: VVDNLKTVLPSWDIH*RQVSQGFELCIGVI
Trigger: GATCACACCAATGCACAATTCAAATCCTTGGCTGACTTGACGGCAGTGGATGTCCCAACTCGGCAGAACCGTTTTGAGATTGTCTACAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS CCA 90 bp TTTCTAACTCATCAAGGCAGGACACCTGAACTTGTTGGACATACTTaGGTAAGATTTCAGCCACATACTCTCCAAATGCTGAGAGCTGCT +
Preference number: 5 (lower is better)
Translates to: FLTHQGRTPELVGHT*VRFQPHTLQMLRAA
Trigger: AGCAGCTCTCAGCATTTGGAGAGTATGTGGCTGAAATCTTACCCAAGTATGTCCAACAAGTTCAGGTGTCCTGCCTTGATGAGTTAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS TCA 72 bp CTGAGAGCTGCTTGTGGGTCACATCACTCCGGGGTCTaGCAGTGGGGCGCTTGTCAGCCGCCGCGCTCTCCC +
Preference number: 6 (lower is better)
Translates to: LRAACGSHHSGV*QWGACQPPRSP
Trigger: GGGAGAGCGCGGCGGCTGACAAGCGCCCCACTGTCAGACCCCGGAGTGATGTGACCCACAAGCAGCTCTCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS CCA 72 bp TCAGCCACATACTCTCCAAATGCTGAGAGCTGCTTGTaGGTCACATCACTCCGGGGTCTGACAGTGGGGCGC +
Preference number: 6 (lower is better)
Translates to: SATYSPNAESCL*VTSLRGLTVGR
Trigger: GCGCCCCACTGTCAGACCCCGGAGTGATGTGACCCACAAGCAGCTCTCAGCATTTGGAGAGTATGTGGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS CAA 72 bp GCAGGGAAAGCCTCCCAGGGGCTGTTCAGGTCAAACTaGCGGAATTCTTGTGCCAGCTCCACTGGTTCAGCC +
Preference number: 6 (lower is better)
Translates to: AGKASQGLFRSN*RNSCASSTGSA
Trigger: GGCTGAACCAGTGGAGCTGGCACAAGAATTCCGCAAGTTTGACCTGAACAGCCCCTGGGAGGCTTTCCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS GCA 72 bp CAGGGAAAGCCTCCCAGGGGCTGTTCAGGTCAAACTTaGGGAATTCTTGTGCCAGCTCCACTGGTTCAGCCA +
Preference number: 6 (lower is better)
Translates to: QGKPPRGCSGQT*GILVPAPLVQP
Trigger: TGGCTGAACCAGTGGAGCTGGCACAAGAATTCCGCAAGTTTGACCTGAACAGCCCCTGGGAGGCTTTCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS CAA 72 bp CTCCCAGGGGCTGTTCAGGTCAAACTTGCGGAATTCTaGTGCCAGCTCCACTGGTTCAGCCACTACCCGCTT +
Preference number: 6 (lower is better)
Translates to: LPGAVQVKLAEF*CQLHWFSHYPL
Trigger: AAGCGGGTAGTGGCTGAACCAGTGGAGCTGGCACAAGAATTCCGCAAGTTTGACCTGAACAGCCCCTGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS CAA 90 bp AGGGAAAGCCTCCCAGGGGCTGTTCAGGTCAAACTTGCGGAATTCTaGTGCCAGCTCCACTGGTTCAGCCACTACCCGCTTTACCTCATC +
Preference number: 6 (lower is better)
Translates to: RESLPGAVQVKLAEF*CQLHWFSHYPLYLI
Trigger: GATGAGGTAAAGCGGGTAGTGGCTGAACCAGTGGAGCTGGCACAAGAATTCCGCAAGTTTGACCTGAACAGCCCCTGGGAGGCTTTCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS GCA 72 bp CCAGGGGCTGTTCAGGTCAAACTTGCGGAATTCTTGTaGCAGCTCCACTGGTTCAGCCACTACCCGCTTTAC +
Preference number: 6 (lower is better)
Translates to: PGAVQVKLAEFL*QLHWFSHYPLY
Trigger: GTAAAGCGGGTAGTGGCTGAACCAGTGGAGCTGGCACAAGAATTCCGCAAGTTTGACCTGAACAGCCCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS TCA 72 bp ACTTGGTTTCAGGCTTCTTGTCTCCAGCTTCGAGCTTaGGACTCTCAGGAGGCTGGCGATAGGCAGGGAAAG +
Preference number: 6 (lower is better)
Translates to: TWFQASCLQLRA*DSQEAGDRQGK
Trigger: CTTTCCCTGCCTATCGCCAGCCTCCTGAGAGTCTCAAGCTCGAAGCTGGAGACAAGAAGCCTGAAACCAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS CAA 90 bp TTGGGTAAGATTTCAGCCACATACTCTCCAAATGCTGAGAGCTGCTaGTGGGTCACATCACTCCGGGGTCTGACAGTGGGGCGCTTGTCA +
Preference number: 6 (lower is better)
Translates to: LGKISATYSPNAESC*WVTSLRGLTVGRLS
Trigger: TGACAAGCGCCCCACTGTCAGACCCCGGAGTGATGTGACCCACAAGCAGCTCTCAGCATTTGGAGAGTATGTGGCTGAAATCTTACCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS GCA 72 bp TCCCAGACCTCCCTCTCATACCAATTGGCCGCGATGTaGACAGACACTATAGAGTCAATGGGTGTCAGCTCA +
Preference number: 6 (lower is better)
Translates to: SQTSLSYQLAAM*TDTIESMGVSS
Trigger: TGAGCTGACACCCATTGACTCTATAGTGTCTGTGCACATCGCGGCCAATTGGTATGAGAGGGAGGTCTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS CCA 72 bp CAGGTCAAACTTGCGGAATTCTTGTGCCAGCTCCACTaGTTCAGCCACTACCCGCTTTACCTCATCGTCGTA +
Preference number: 6 (lower is better)
Translates to: QVKLAEFLCQLH*FSHYPLYLIVV
Trigger: TACGACGATGAGGTAAAGCGGGTAGTGGCTGAACCAGTGGAGCTGGCACAAGAATTCCGCAAGTTTGACCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS CAA 90 bp CCGAGTTGGGACATCCACTGCCGTCAAGTCAGCCAAGGATTTGAATaGTGCATTGGTGTGATCCCTGAGAAAAGTCAGCGTTGGGATGAC +
Preference number: 6 (lower is better)
Translates to: PSWDIHCRQVSQGFE*CIGVIPEKSQRWDD
Trigger: GTCATCCCAACGCTGACTTTTCTCAGGGATCACACCAATGCACAATTCAAATCCTTGGCTGACTTGACGGCAGTGGATGTCCCAACTCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS CAA 72 bp GCAGGTTGTAGACAATCTCAAAACGGTTCTGCCGAGTaGGGACATCCACTGCCGTCAAGTCAGCCAAGGATT +
Preference number: 6 (lower is better)
Translates to: AGCRQSQNGSAE*GHPLPSSQPRI
Trigger: AATCCTTGGCTGACTTGACGGCAGTGGATGTCCCAACTCGGCAGAACCGTTTTGAGATTGTCTACAACCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS TCA 72 bp TTACCTCATCGTCGTAACGAAGCTCAACATAGCCAGTaGGGGGAAAGTCTTTCCGGAAAGGATGTCCCTCGA +
Preference number: 6 (lower is better)
Translates to: LPHRRNEAQHSQ*GESLSGKDVPR
Trigger: TCGAGGGACATCCTTTCCGGAAAGACTTTCCCCTCACTGGCTATGTTGAGCTTCGTTACGACGATGAGGTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS CCA 72 bp CAGGTTGTAGACAATCTCAAAACGGTTCTGCCGAGTTaGGACATCCACTGCCGTCAAGTCAGCCAAGGATTT +
Preference number: 6 (lower is better)
Translates to: QVVDNLKTVLPS*DIHCRQVSQGF
Trigger: AAATCCTTGGCTGACTTGACGGCAGTGGATGTCCCAACTCGGCAGAACCGTTTTGAGATTGTCTACAACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS CAA 72 bp ACTCCAAACATGTCCCAGACCTCCCTCTCATACCAATaGGCCGCGATGTGCACAGACACTATAGAGTCAATG +
Preference number: 6 (lower is better)
Translates to: TPNMSQTSLSYQ*AAMCTDTIESM
Trigger: CATTGACTCTATAGTGTCTGTGCACATCGCGGCCAATTGGTATGAGAGGGAGGTCTGGGACATGTTTGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS GCA 72 bp ATCCACTGCCGTCAAGTCAGCCAAGGATTTGAATTGTaGATTGGTGTGATCCCTGAGAAAAGTCAGCGTTGG +
Preference number: 6 (lower is better)
Translates to: IHCRQVSQGFEL*IGVIPEKSQRW
Trigger: CCAACGCTGACTTTTCTCAGGGATCACACCAATGCACAATTCAAATCCTTGGCTGACTTGACGGCAGTGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS CAA 72 bp GACATCCACTGCCGTCAAGTCAGCCAAGGATTTGAATaGTGCATTGGTGTGATCCCTGAGAAAAGTCAGCGT +
Preference number: 6 (lower is better)
Translates to: DIHCRQVSQGFE*CIGVIPEKSQR
Trigger: ACGCTGACTTTTCTCAGGGATCACACCAATGCACAATTCAAATCCTTGGCTGACTTGACGGCAGTGGATGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS GCA 72 bp AATCTCAAAACGGTTCTGCCGAGTTGGGACATCCACTaGCGTCAAGTCAGCCAAGGATTTGAATTGTGCATT +
Preference number: 6 (lower is better)
Translates to: NLKTVLPSWDIH*RQVSQGFELCI
Trigger: AATGCACAATTCAAATCCTTGGCTGACTTGACGGCAGTGGATGTCCCAACTCGGCAGAACCGTTTTGAGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4
CDS GCA 72 bp CACAGACACTATAGAGTCAATGGGTGTCAGCTCATCTaGATAGGTCTTCACACGAATCCTAGAGTTGAACCG +
Preference number: 6 (lower is better)
Translates to: HRHYRVNGCQLI*IGLHTNPRVEP
Trigger: CGGTTCAACTCTAGGATTCGTGTGAAGACCTATGCAGATGAGCTGACACCCATTGACTCTATAGTGTCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005647.4