Pregenerated sensors for NDUFC2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030647

Ensembl transcript IDs: ENSMUST00000032882.9, ENSMUST00000149122.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	AATCCCATAAAACTCAGAAAATATTCAGGTTGTGGTGAAGAGGAACAGGAACAAGCGGGTCGTTCAGCTTaGGCGGGGGCAGGCTCCGGG	+
Preference number: 4 (lower is better) Translates to: NPIKLRKYSGCGEEEQEQAGRSA*AGAGSG Trigger: CCCGGAGCCTGCCCCCGCCCAAGCTGAACGACCCGC...TTGTTCCTGTTCCTCTTCACCACAACCTGAATATTTTCTGAGTTTTATGGGATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032882.9
CDS-3UTR CCA 90 bp	AACTCAGAAAATATTCAGGTTGTGGTGAAGAGGAACAGGAACAAGCCTTTTGAAACGCACTGGATGGAATaGCTCAAGAATTTCAGCATA	+
Preference number: 4 (lower is better) Translates to: NSENIQVVVKRNRNKPFETHWME*LKNFSI Trigger: TATGCTGAAATTCTTGAGCCATTCCATCCAGTGCGT...TTCAAAAGGCTTGTTCCTGTTCCTCTTCACCACAACCTGAATATTTTCTGAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032882.9
CDS CCA 90 bp	AGTAGCCCAACAAGCCCATGTAGACAAGCCGCGGGTCGTTCAGCTTaGGCGGGGGCAGGCTCCGGGCCTCGTCCGGCAAGAATTTTAAGG	+
Preference number: 5 (lower is better) Translates to: SSPTSPCRQAAGRSA*AGAGSGPRPARILR Trigger: CCTTAAAATTCTTGCCGGACGAGGCCCGGAGCCTGCCCCCGCCCAAGCTGAACGACCCGCGGCTTGTCTACATGGGCTTGTTGGGCTACT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032882.9 ENSMUST00000149122.2
CDS GCA 90 bp	CTCTCATCACCGGTCGCATCCGCAGCATGTTGTCCATCAGGCCCGTaGAGTAGCCCAACAAGCCCATGTAGACAAGCCGCGGGTCGTTCA	+
Preference number: 5 (lower is better) Translates to: LSSPVASAACCPSGP*SSPTSPCRQAAGRS Trigger: TGAACGACCCGCGGCTTGTCTACATGGGCTTGTTGGGCTACTGCACGGGCCTGATGGACAACATGCTGCGGATGCGACCGGTGATGAGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032882.9 ENSMUST00000149122.2
CDS GCA 90 bp	AGCAAAGACAAAGGACGTAACGAACAGAAGCTGGCGGTGCAAACCTaGTCTCATCACCGGTCGCATCCGCAGCATGTTGTCCATCAGGCC	+
Preference number: 5 (lower is better) Translates to: SKDKGRNEQKLAVQT*SHHRSHPQHVVHQA Trigger: GGCCTGATGGACAACATGCTGCGGATGCGACCGGTGATGAGAGCAGGTTTGCACCGCCAGCTTCTGTTCGTTACGTCCTTTGTCTTTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032882.9 ENSMUST00000149122.2
CDS GCA 90 bp	AAGTATCCAGCAAAGACAAAGGACGTAACGAACAGAAGCTGGCGGTaGAAACCTGCTCTCATCACCGGTCGCATCCGCAGCATGTTGTCC	+
Preference number: 5 (lower is better) Translates to: KYPAKTKDVTNRSWR*KPALITGRIRSMLS Trigger: GGACAACATGCTGCGGATGCGACCGGTGATGAGAGCAGGTTTGCACCGCCAGCTTCTGTTCGTTACGTCCTTTGTCTTTGCTGGATACTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032882.9 ENSMUST00000149122.2
CDS-3UTR CAA 90 bp	ATAAAACTCAGAAAATATTCAGGTTGTGGTGAAGAGGAACAGGAACAAGCCTTTCGCGGGTCGTTCAGCTaGGGCGGGGGCAGGCTCCGG	+
Preference number: 5 (lower is better) Translates to: IKLRKYSGCGEEEQEQAFRGSFS*GGGRLR Trigger: CCGGAGCCTGCCCCCGCCCAAGCTGAACGACCCGCG...AAAGGCTTGTTCCTGTTCCTCTTCACCACAACCTGAATATTTTCTGAGTTTTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032882.9
CDS GCA 72 bp	GCAAAGACAAAGGACGTAACGAACAGAAGCTGGCGGTaGAAACCTGCTCTCATCACCGGTCGCATCCGCAGC	+
Preference number: 6 (lower is better) Translates to: AKTKDVTNRSWR*KPALITGRIRS Trigger: GCTGCGGATGCGACCGGTGATGAGAGCAGGTTTGCACCGCCAGCTTCTGTTCGTTACGTCCTTTGTCTTTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032882.9 ENSMUST00000149122.2
CDS GCA 72 bp	AAAGGACGTAACGAACAGAAGCTGGCGGTGCAAACCTaGTCTCATCACCGGTCGCATCCGCAGCATGTTGTC	+
Preference number: 6 (lower is better) Translates to: KGRNEQKLAVQT*SHHRSHPQHVV Trigger: GACAACATGCTGCGGATGCGACCGGTGATGAGAGCAGGTTTGCACCGCCAGCTTCTGTTCGTTACGTCCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032882.9 ENSMUST00000149122.2
CDS CCA 72 bp	TATCCAGCAAAGACAAAGGACGTAACGAACAGAAGCTaGCGGTGCAAACCTGCTCTCATCACCGGTCGCATC	+
Preference number: 6 (lower is better) Translates to: YPAKTKDVTNRS*RCKPALITGRI Trigger: GATGCGACCGGTGATGAGAGCAGGTTTGCACCGCCAGCTTCTGTTCGTTACGTCCTTTGTCTTTGCTGGATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032882.9 ENSMUST00000149122.2

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