Pregenerated sensors for NDUFC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037152

Ensembl transcript IDs: ENSMUST00000038108.12, ENSMUST00000193279.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	GGGCCTACAAGTCCACCAGGGATCTCCATGGGAGACCCCTGCATGTaGGAAATTCAGCTAACACTCTCTACTTTTGCATGCTATTTGAGG	+
Preference number: 1 (lower is better) Translates to: GPTSPPGISMGDPCM*EIQLTLSTFACYLR Trigger: CCTCAAATAGCATGCAAAAGTAGAGAGTGTTAGCTGAATTTCCCACATGCAGGGGTCTCCCATGGAGATCCCTGGTGGACTTGTAGGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038108.12
3UTR-3UTR TCA 90 bp	TTTAACTTAACCATGCAAAACGTGTTGACTGACTCATATTCGCATGTAACTCTTCCAGAGGAAGGACTGTaGTCATCACATGAAGCTGAC	+
Preference number: 2 (lower is better) Translates to: FNLTMQNVLTDSYSHVTLPEEGL*SSHEAD Trigger: GTCAGCTTCATGTGATGATCACAGTCCTTCCTCTGG...AAGAGTTACATGCGAATATGAGTCAGTCAACACGTTTTGCATGGTTAAGTTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038108.12
3UTR GCA 72 bp	CCTACAAGTCCACCAGGGATCTCCATGGGAGACCCCTaGATGTGGGAAATTCAGCTAACACTCTCTACTTTT	+
Preference number: 3 (lower is better) Translates to: PTSPPGISMGDP*MWEIQLTLSTF Trigger: AAAAGTAGAGAGTGTTAGCTGAATTTCCCACATGCAGGGGTCTCCCATGGAGATCCCTGGTGGACTTGTAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038108.12
3UTR TCA 72 bp	CATCCGTCACTGAGGGTGAATCCAGAGGAAGGACTGTaGTCATCACATGAAGCTGACTGTATTATTTCCAAA	+
Preference number: 3 (lower is better) Translates to: HPSLRVNPEEGL*SSHEADCIISK Trigger: TTTGGAAATAATACAGTCAGCTTCATGTGATGATCACAGTCCTTCCTCTGGATTCACCCTCAGTGACGGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038108.12
CDS-3UTR GCA 90 bp	CTCCATGGGAGACCCCTGCATGTGGGAAATTCAGCTAACACTCTCTACTTTTGCCACGGACAGTCCAACTaGCAACCAGTTAGGTTTGGC	+
Preference number: 4 (lower is better) Translates to: LHGRPLHVGNSANTLYFCHGQSN*QPVRFG Trigger: GCCAAACCTAACTGGTTGGCAGTTGGACTGTCCGTG...GCAAAAGTAGAGAGTGTTAGCTGAATTTCCCACATGCAGGGGTCTCCCATGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038108.12
CDS TCA 90 bp	AGGTTTGGCATTGACTGGCTCCCGGACATAGAACTTCGACCGTGTTaGAGAGCAGCTCGGCAGCCGGGCGGGGGCCAGCAGCCGCGAAAA	+
Preference number: 5 (lower is better) Translates to: RFGIDWLPDIELRPC*RAARQPGGGQQPRK Trigger: TTTTCGCGGCTGCTGGCCCCCGCCCGGCTGCCGAGCTGCTCTTCAACACGGTCGAAGTTCTATGTCCGGGAGCCAGTCAATGCCAAACCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038108.12 ENSMUST00000193279.2
CDS GCA 90 bp	GAGATAAATCCACATGAAAACCGAGGCGCCCACGGACAGTCCAACTaGCAACCAGTTAGGTTTGGCATTGACTGGCTCCCGGACATAGAA	+
Preference number: 5 (lower is better) Translates to: EINPHENRGAHGQSN*QPVRFGIDWLPDIE Trigger: TTCTATGTCCGGGAGCCAGTCAATGCCAAACCTAACTGGTTGGCAGTTGGACTGTCCGTGGGCGCCTCGGTTTTCATGTGGATTTATCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038108.12 ENSMUST00000193279.2
CDS TCA 72 bp	ATTGACTGGCTCCCGGACATAGAACTTCGACCGTGTTaGAGAGCAGCTCGGCAGCCGGGCGGGGGCCAGCAG	+
Preference number: 6 (lower is better) Translates to: IDWLPDIELRPC*RAARQPGGGQQ Trigger: CTGCTGGCCCCCGCCCGGCTGCCGAGCTGCTCTTCAACACGGTCGAAGTTCTATGTCCGGGAGCCAGTCAAT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038108.12 ENSMUST00000193279.2
CDS GCA 72 bp	CCACATGAAAACCGAGGCGCCCACGGACAGTCCAACTaGCAACCAGTTAGGTTTGGCATTGACTGGCTCCCG	+
Preference number: 6 (lower is better) Translates to: PHENRGAHGQSN*QPVRFGIDWLP Trigger: CGGGAGCCAGTCAATGCCAAACCTAACTGGTTGGCAGTTGGACTGTCCGTGGGCGCCTCGGTTTTCATGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038108.12 ENSMUST00000193279.2