Pregenerated sensors for NDUFB8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025204Ensembl transcript IDs: ENSMUST00000026222.11, ENSMUST00000167027.2, ENSMUST00000168083.2, ENSMUST00000171415.8
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCAAATTGGGAAGAGAGCACCTCCCTTCCCTCTTGGCCCTGGAAATaGGCAACAGCGGATCCTTCACTCTCTGCTGTGCGACTGCAGCTG | + |
|
Preference number: 1 (lower is better) Translates to: PNWEESTSLPSWPWK*ATADPSLSAVRLQL Trigger: CAGCTGCAGTCGCACAGCAGAGAGTGAAGGATCCGCTGTTGCCCATTTCCAGGGCCAAGAGGGAAGGGAGGTGCTCTCTTCCCAATTTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR CCA 90 bp | CTTGTTCCAAATTGGGAAGAGAGCACCTCCCTTCCCTCTTGGCCCTaGAAATGGGCAACAGCGGATCCTTCACTCTCTGCTGTGCGACTG | + |
|
Preference number: 1 (lower is better) Translates to: LVPNWEESTSLPSWP*KWATADPSLSAVRL Trigger: CAGTCGCACAGCAGAGAGTGAAGGATCCGCTGTTGCCCATTTCCAGGGCCAAGAGGGAAGGGAGGTGCTCTCTTCCCAATTTGGAACAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR CCA 90 bp | GTGAATCTTGTTCCAAATTGGGAAGAGAGCACCTCCCTTCCCTCTTaGCCCTGGAAATGGGCAACAGCGGATCCTTCACTCTCTGCTGTG | + |
|
Preference number: 1 (lower is better) Translates to: VNLVPNWEESTSLPS*PWKWATADPSLSAV Trigger: CACAGCAGAGAGTGAAGGATCCGCTGTTGCCCATTTCCAGGGCCAAGAGGGAAGGGAGGTGCTCTCTTCCCAATTTGGAACAAGATTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR GCA 90 bp | AACCTTCCTTCCCATCCTTCCAATTTCAGAGCAGGAAAACAGGAATaGAGGCAGGCAGCACGTAGAGGGAAGGACAAGGACCTGGATCCT | + |
|
Preference number: 1 (lower is better) Translates to: NLPSHPSNFRAGKQE*RQAARRGKDKDLDP Trigger: AGGATCCAGGTCCTTGTCCTTCCCTCTACGTGCTGCCTGCCTGCATTCCTGTTTTCCTGCTCTGAAATTGGAAGGATGGGAAGGAAGGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR TCA 90 bp | CCTCCAAAGGTGACAACTAGAGGTCAGGGTTGGAGTAGTTCTCAGTaGCACATGTACCCTTTAGGCAAAGTGGCCATGATGTCCTTGCAT | + |
|
Preference number: 1 (lower is better) Translates to: PPKVTTRGQGWSSSQ*HMYPLGKVAMMSLH Trigger: ATGCAAGGACATCATGGCCACTTTGCCTAAAGGGTACATGTGTCACTGAGAACTACTCCAACCCTGACCTCTAGTTGTCACCTTTGGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR TCA 90 bp | TATTTCCCCAGTGGAGCCAGCTTCTTGAGACAGCACCTCACTAGCTaGGTTAGAGCTCAGAGATGTTTCCTGCTTCTCCTTCCTAATGCT | + |
|
Preference number: 1 (lower is better) Translates to: YFPSGASFLRQHLTS*VRAQRCFLLLLPNA Trigger: AGCATTAGGAAGGAGAAGCAGGAAACATCTCTGAGCTCTAACTCAGCTAGTGAGGTGCTGTCTCAAGAAGCTGGCTCCACTGGGGAAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR TCA 90 bp | GCAAACACTATAAATCTGAGAACTTTAGACTGTTACCTCCAAAGGTaGCAACTAGAGGTCAGGGTTGGAGTAGTTCTCAGTGACACATGT | + |
|
Preference number: 1 (lower is better) Translates to: ANTINLRTLDCYLQR*QLEVRVGVVLSDTC Trigger: ACATGTGTCACTGAGAACTACTCCAACCCTGACCTCTAGTTGTCACCTTTGGAGGTAACAGTCTAAAGTTCTCAGATTTATAGTGTTTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR TCA 90 bp | AGATGTTTCCTGCTTCTCCTTCCTAATGCTGGGATTAAAGCCATCTaGGCAAACACTATAAATCTGAGAACTTTAGACTGTTACCTCCAA | + |
|
Preference number: 1 (lower is better) Translates to: RCFLLLLPNAGIKAI*ANTINLRTLDCYLQ Trigger: TTGGAGGTAACAGTCTAAAGTTCTCAGATTTATAGTGTTTGCTCAGATGGCTTTAATCCCAGCATTAGGAAGGAGAAGCAGGAAACATCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR GCA 90 bp | TGGCTACTTTGTCCGTTATTCCACGGCCATCCTGGTGACTGTTATTaGTTTCTTATAAGTTTTAATCTGATTGCTATACTTTTTAATCCT | + |
|
Preference number: 1 (lower is better) Translates to: WLLCPLFHGHPGDCY*FLISFNLIAILFNP Trigger: AGGATTAAAAAGTATAGCAATCAGATTAAAACTTATAAGAAAGCAATAACAGTCACCAGGATGGCCGTGGAATAACGGACAAAGTAGCCA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR TCA 90 bp | ATAGCCTTACTGTGTAGCCCAGACCGGTTTCAAACATGCAATCCTCCTGCCTCACTGTGCGACTGCAGCTaGAAACCACTCTCCCATCCC | + |
|
Preference number: 2 (lower is better) Translates to: IALLCSPDRFQTCNPPASLCDCS*KPLSHP Trigger: GGGATGGGAGAGTGGTTTTCAGCTGCAGTCGCACAG...TGAGGCAGGAGGATTGCATGTTTGAAACCGGTCTGGGCTACACAGTAAGGCTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR CCA 90 bp | AGACTACAAATGTGGCTACTTTGTCCGTTATTCCACGGCCATCCTGGTGACTGTCCATCATGTGGGTGCTaGGAGAGCACCCAGTACCCC | + |
|
Preference number: 2 (lower is better) Translates to: RLQMWLLCPLFHGHPGDCPSCGC*ESTQYP Trigger: GGGGTACTGGGTGCTCTCCCAGCACCCACATGATGG...ACAGTCACCAGGATGGCCGTGGAATAACGGACAAAGTAGCCACATTTGTAGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR CAA 90 bp | AGTGAATCTTGTTCCAAATTGGGAAGAGAGCACCTCCCTTCCCTCTaGGCCCTGGAAATGGGCAACAGCGGATCCTTCACTCTCTGCTGT | + |
|
Preference number: 2 (lower is better) Translates to: SESCSKLGREHLPSL*ALEMGNSGSFTLCC Trigger: ACAGCAGAGAGTGAAGGATCCGCTGTTGCCCATTTCCAGGGCCAAGAGGGAAGGGAGGTGCTCTCTTCCCAATTTGGAACAAGATTCACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR GCA 90 bp | AGACTACAAATGTGGCTACTTTGTCCGTTATTCCACGGCCATCCTGGTGACTGTCCATGGAGATCCTCCTaGCTCAGCCTCCCAAGTGCT | + |
|
Preference number: 2 (lower is better) Translates to: RLQMWLLCPLFHGHPGDCPWRSS*LSLPSA Trigger: AGCACTTGGGAGGCTGAGGCAGGAGGATCTCCATGG...ACAGTCACCAGGATGGCCGTGGAATAACGGACAAAGTAGCCACATTTGTAGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR CAA 90 bp | TCAGGCATGAGCCACCATGGTTCCTTCCACCAATTCTTACCCTCCTaGAAGGTTAACAGATATCTGCTTGGATTGCCTGGAAGCCCCCAT | + |
|
Preference number: 2 (lower is better) Translates to: SGMSHHGSFHQFLPS*KVNRYLLGLPGSPH Trigger: ATGGGGGCTTCCAGGCAATCCAAGCAGATATCTGTTAACCTTCAAGGAGGGTAAGAATTGGTGGAAGGAACCATGGTGGCTCATGCCTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR TCA 90 bp | TTAGACTACAAATGTGGCTACTTTGTCCGTTATTCCACGGCCATCCTGGTGACTGATGGTGTCAGGTCCTaGGGAGTGAGTTACAGATGG | + |
|
Preference number: 2 (lower is better) Translates to: LDYKCGYFVRYSTAILVTDGVRS*GVSYRW Trigger: CCATCTGTAACTCACTCCTCAGGACCTGACACCATC...AGTCACCAGGATGGCCGTGGAATAACGGACAAAGTAGCCACATTTGTAGTCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR GCA 90 bp | ATCCACCTGCCTCTGTCCCACCCACCAGGTGCTAGAATTAAAAGCTTGTACCACCTCAGAGATGTTTCCTaGTTCTCCTTCCTAATGCTG | + |
|
Preference number: 2 (lower is better) Translates to: IHLPLSHPPGARIKSLYHLRDVS*FSFLML Trigger: CAGCATTAGGAAGGAGAAGCAGGAAACATCTCTGAG...GTGGTACAAGCTTTTAATTCTAGCACCTGGTGGGTGGGACAGAGGCAGGTGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR TCA 90 bp | ATAGCCTTACTGTGTAGCCCAGACCGGTTTCAAACATGCAATCCTCCTGCCTCACCATCCCCAGTGAGATaGCCTATGATTTTCTTACAC | + |
|
Preference number: 2 (lower is better) Translates to: IALLCSPDRFQTCNPPASPSPVR*PMIFLH Trigger: GTGTAAGAAAATCATAGGTCATCTCACTGGGGATGG...TGAGGCAGGAGGATTGCATGTTTGAAACCGGTCTGGGCTACACAGTAAGGCTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR CCA 90 bp | CTACTTTGTCCGTTATTCCACGGCCATCCTGGTGACTGTTATTGCTTTCTTATAACCTCCCTTCCCTCTTaGCCCTGGAAATGGGCAACA | + |
|
Preference number: 2 (lower is better) Translates to: LLCPLFHGHPGDCYCFLITSLPS*PWKWAT Trigger: TGTTGCCCATTTCCAGGGCCAAGAGGGAAGGGAGGT...TATAAGAAAGCAATAACAGTCACCAGGATGGCCGTGGAATAACGGACAAAGTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR CAA 90 bp | CACCAATTCTTACCCTCCTTGAAGGTTAACAGATATCTGCTTGGATaGCCTGGAAGCCCCCATAGCCAAGACTTTTTAGTGGTTGCACCA | + |
|
Preference number: 2 (lower is better) Translates to: HQFLPSLKVNRYLLG*PGSPHSQDFLVVAP Trigger: TGGTGCAACCACTAAAAAGTCTTGGCTATGGGGGCTTCCAGGCAATCCAAGCAGATATCTGTTAACCTTCAAGGAGGGTAAGAATTGGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR GCA 90 bp | TTTTTAGTGGTTGCACCAGTCACTTCTACTCAACGAGCCTTATGGCTTAGACTAGCAGGAAAACAGGAATaGAGGCAGGCAGCACGTAGA | + |
|
Preference number: 2 (lower is better) Translates to: FLVVAPVTSTQRALWLRLAGKQE*RQAARR Trigger: TCTACGTGCTGCCTGCCTGCATTCCTGTTTTCCTGC...TAGTCTAAGCCATAAGGCTCGTTGAGTAGAAGTGACTGGTGCAACCACTAAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR TCA 90 bp | ATCCACCTGCCTCTGTCCCACCCACCAGGTGCTAGAATTAAAAGCTTGTACCACATGATTTTCTTACACTaGTTTCCTAACCTTCCTTCC | + |
|
Preference number: 2 (lower is better) Translates to: IHLPLSHPPGARIKSLYHMIFLH*FPNLPS Trigger: GGAAGGAAGGTTAGGAAATCAGTGTAAGAAAATCAT...GTGGTACAAGCTTTTAATTCTAGCACCTGGTGGGTGGGACAGAGGCAGGTGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR TCA 90 bp | CTTCTACTCAACGAGCCTTATGGCTTAGACTACAAATGTGGCTACTTTGTCCGTTCAGGTCCTGAGGAGTaGGTTACAGATGGTTGTGAA | + |
|
Preference number: 2 (lower is better) Translates to: LLLNEPYGLDYKCGYFVRSGPEE*VTDGCE Trigger: TTCACAACCATCTGTAACTCACTCCTCAGGACCTGA...ACGGACAAAGTAGCCACATTTGTAGTCTAAGCCATAAGGCTCGTTGAGTAGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR CCA 90 bp | CTTCTACTCAACGAGCCTTATGGCTTAGACTACAAATGTGGCTACTTTGTCCGTCTGGAAATCAGAAGATaGTGTCAGGTCCTGAGGAGT | + |
|
Preference number: 2 (lower is better) Translates to: LLLNEPYGLDYKCGYFVRLEIRR*CQVLRS Trigger: ACTCCTCAGGACCTGACACCATCTTCTGATTTCCAG...ACGGACAAAGTAGCCACATTTGTAGTCTAAGCCATAAGGCTCGTTGAGTAGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR CCA 90 bp | TTAGACTACAAATGTGGCTACTTTGTCCGTTATTCCACGGCCATCCTGGTGACTCACATGCAGTGTCTCTaGAAATCAGAAGATGGTGTC | + |
|
Preference number: 2 (lower is better) Translates to: LDYKCGYFVRYSTAILVTHMQCL*KSEDGV Trigger: GACACCATCTTCTGATTTCCAGAGACACTGCATGTG...AGTCACCAGGATGGCCGTGGAATAACGGACAAAGTAGCCACATTTGTAGTCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR GCA 90 bp | CAAAGTGGCCATGATGTCCTTGCATATTCTTCAATGATGCCTGTAGATACTTTGAACATGCAATCCTCCTaGCTCAGCTTCCTGCATGCT | + |
|
Preference number: 2 (lower is better) Translates to: QSGHDVLAYSSMMPVDTLNMQSS*LSFLHA Trigger: AGCATGCAGGAAGCTGAGGCAGGAGGATTGCATGTT...CAAAGTATCTACAGGCATCATTGAAGAATATGCAAGGACATCATGGCCACTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR TCA 90 bp | TATAAATCTGAGAACTTTAGACTGTTACCTCCAAAGGTGACAACTAGAGGTCAGGAAATGCCACAGATCTaGCCAGGCATTCCCTACTGT | + |
|
Preference number: 2 (lower is better) Translates to: YKSENFRLLPPKVTTRGQEMPQI*PGIPYC Trigger: ACAGTAGGGAATGCCTGGTCAGATCTGTGGCATTTC...CTGACCTCTAGTTGTCACCTTTGGAGGTAACAGTCTAAAGTTCTCAGATTTATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR CCA 90 bp | TGTCCGTTATTCCACGGCCATCCTGGTGACTGTTATTGCTTTCTTATAAGTTTTAATCTTGTTCCAAATTaGGAAGAGAGCACCTCCCTT | + |
|
Preference number: 2 (lower is better) Translates to: CPLFHGHPGDCYCFLISFNLVPN*EESTSL Trigger: AAGGGAGGTGCTCTCTTCCCAATTTGGAACAAGATT...AAAACTTATAAGAAAGCAATAACAGTCACCAGGATGGCCGTGGAATAACGGACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR CAA 90 bp | ACCCCTAAGCCCTATTTCCCCAGTGGAGCCAGCTTCTTGAGACAGCACCTCACTCACCTCCCTTCCCTCTaGGCCCTGGAAATGGGCAAC | + |
|
Preference number: 3 (lower is better) Translates to: TPKPYFPSGASFLRQHLTHLPSL*ALEMGN Trigger: GTTGCCCATTTCCAGGGCCAAGAGGGAAGGGAGGTG...AGTGAGGTGCTGTCTCAAGAAGCTGGCTCCACTGGGGAAATAGGGCTTAGGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR CCA 72 bp | GAAGAGAGCACCTCCCTTCCCTCTTGGCCCTGGAAATaGGCAACAGCGGATCCTTCACTCTCTGCTGTGCGA | + |
|
Preference number: 3 (lower is better) Translates to: EESTSLPSWPWK*ATADPSLSAVR Trigger: TCGCACAGCAGAGAGTGAAGGATCCGCTGTTGCCCATTTCCAGGGCCAAGAGGGAAGGGAGGTGCTCTCTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR CCA 72 bp | AATTGGGAAGAGAGCACCTCCCTTCCCTCTTGGCCCTaGAAATGGGCAACAGCGGATCCTTCACTCTCTGCT | + |
|
Preference number: 3 (lower is better) Translates to: NWEESTSLPSWP*KWATADPSLSA Trigger: AGCAGAGAGTGAAGGATCCGCTGTTGCCCATTTCCAGGGCCAAGAGGGAAGGGAGGTGCTCTCTTCCCAATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR CCA 72 bp | GTTCCAAATTGGGAAGAGAGCACCTCCCTTCCCTCTTaGCCCTGGAAATGGGCAACAGCGGATCCTTCACTC | + |
|
Preference number: 3 (lower is better) Translates to: VPNWEESTSLPS*PWKWATADPSL Trigger: GAGTGAAGGATCCGCTGTTGCCCATTTCCAGGGCCAAGAGGGAAGGGAGGTGCTCTCTTCCCAATTTGGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR TCA 72 bp | CCCCTAAGCCCTATTTCCCCAGTGGAGCCAGCTTCTTaGGACAGCACCTCACTAGCTGAGTTAGAGCTCAGA | + |
|
Preference number: 3 (lower is better) Translates to: PLSPISPVEPAS*DSTSLAELELR Trigger: TCTGAGCTCTAACTCAGCTAGTGAGGTGCTGTCTCAAGAAGCTGGCTCCACTGGGGAAATAGGGCTTAGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR GCA 72 bp | ATAGCCTTACTGTGTAGCCCAGACCGGTTTCAAACATaGAATCCTCCTGCCTCAGCTTCCTGCATGCTAAGA | + |
|
Preference number: 3 (lower is better) Translates to: IALLCSPDRFQT*NPPASASCMLR Trigger: TCTTAGCATGCAGGAAGCTGAGGCAGGAGGATTGCATGTTTGAAACCGGTCTGGGCTACACAGTAAGGCTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR TCA 72 bp | GTGACAACTAGAGGTCAGGGTTGGAGTAGTTCTCAGTaGCACATGTACCCTTTAGGCAAAGTGGCCATGATG | + |
|
Preference number: 3 (lower is better) Translates to: VTTRGQGWSSSQ*HMYPLGKVAMM Trigger: CATCATGGCCACTTTGCCTAAAGGGTACATGTGTCACTGAGAACTACTCCAACCCTGACCTCTAGTTGTCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR TCA 72 bp | GCCACCATGGTTCCTTCCACCAATTCTTACCCTCCTTaGAGGTTAACAGATATCTGCTTGGATTGCCTGGAA | + |
|
Preference number: 3 (lower is better) Translates to: ATMVPSTNSYPP*RLTDICLDCLE Trigger: TTCCAGGCAATCCAAGCAGATATCTGTTAACCTTCAAGGAGGGTAAGAATTGGTGGAAGGAACCATGGTGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR CAA 90 bp | GCACCACATGCAGTGTCTCTGGAAATCAGAAGATGGTGTCAGGTCCTGAGGAGTATGCCTGTAGATACTTaGTGGTTGACAACATATACT | + |
|
Preference number: 3 (lower is better) Translates to: APHAVSLEIRRWCQVLRSMPVDT*WLTTYT Trigger: AGTATATGTTGTCAACCACAAAGTATCTACAGGCAT...ACTCCTCAGGACCTGACACCATCTTCTGATTTCCAGAGACACTGCATGTGGTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR CCA 72 bp | AAATGGTTTTTAAGGAAAGTGAATCTTGTTCCAAATTaGGAAGAGAGCACCTCCCTTCCCTCTTGGCCCTGG | + |
|
Preference number: 3 (lower is better) Translates to: KWFLRKVNLVPN*EESTSLPSWPW Trigger: CCAGGGCCAAGAGGGAAGGGAGGTGCTCTCTTCCCAATTTGGAACAAGATTCACTTTCCTTAAAAACCATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR CCA 72 bp | GTGGTTGCACCAGTCACTTCTACTCAACGAGCCTTATaGCTTAGACTACAAATGTGGCTACTTTGTCCGTTA | + |
|
Preference number: 3 (lower is better) Translates to: VVAPVTSTQRAL*LRLQMWLLCPL Trigger: TAACGGACAAAGTAGCCACATTTGTAGTCTAAGCCATAAGGCTCGTTGAGTAGAAGTGACTGGTGCAACCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR CCA 72 bp | TCTTTTATTCGGTTGAGTTTCAGGCATGAGCCACCATaGTTCCTTCCACCAATTCTTACCCTCCTTGAAGGT | + |
|
Preference number: 3 (lower is better) Translates to: SFIRLSFRHEPP*FLPPILTLLEG Trigger: ACCTTCAAGGAGGGTAAGAATTGGTGGAAGGAACCATGGTGGCTCATGCCTGAAACTCAACCGAATAAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR GCA 72 bp | TTTTATGAGTGTTTGCCTGAATGTCTGAGCACCACATaGAGTGTCTCTGGAAATCAGAAGATGGTGTCAGGT | + |
|
Preference number: 3 (lower is better) Translates to: FYECLPECLSTT*SVSGNQKMVSG Trigger: ACCTGACACCATCTTCTGATTTCCAGAGACACTGCATGTGGTGCTCAGACATTCAGGCAAACACTCATAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR-3UTR CAA 90 bp | CAAAGTGGCCATGATGTCCTTGCATATTCTTCAATGATGCCTGTAGATACTTTGGAATCTTGTTCCAAATaGGGAAGAGAGCACCTCCCT | + |
|
Preference number: 3 (lower is better) Translates to: QSGHDVLAYSSMMPVDTLESCSK*GREHLP Trigger: AGGGAGGTGCTCTCTTCCCAATTTGGAACAAGATTC...CAAAGTATCTACAGGCATCATTGAAGAATATGCAAGGACATCATGGCCACTTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR TCA 72 bp | TTACACCATTTCTTTTATTCGGTTGAGTTTCAGGCATaGGCCACCATGGTTCCTTCCACCAATTCTTACCCT | + |
|
Preference number: 3 (lower is better) Translates to: LHHFFYSVEFQA*ATMVPSTNSYP Trigger: AGGGTAAGAATTGGTGGAAGGAACCATGGTGGCTCATGCCTGAAACTCAACCGAATAAAAGAAATGGTGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR GCA 72 bp | TTTAGAAAACTTGCTTTGAAAGGGGGAATGAAGAAATaGCACAGATCTGACCAGGCATTCCCTACTGTTCCA | + |
|
Preference number: 3 (lower is better) Translates to: FRKLALKGGMKK*HRSDQAFPTVP Trigger: TGGAACAGTAGGGAATGCCTGGTCAGATCTGTGGCATTTCTTCATTCCCCCTTTCAAAGCAAGTTTTCTAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR TCA 72 bp | ATAAATCTGAGAACTTTAGACTGTTACCTCCAAAGGTaGCAACTAGAGGTCAGGGTTGGAGTAGTTCTCAGT | + |
|
Preference number: 3 (lower is better) Translates to: INLRTLDCYLQR*QLEVRVGVVLS Trigger: ACTGAGAACTACTCCAACCCTGACCTCTAGTTGTCACCTTTGGAGGTAACAGTCTAAAGTTCTCAGATTTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR TCA 72 bp | CTGCTTCTCCTTCCTAATGCTGGGATTAAAGCCATCTaGGCAAACACTATAAATCTGAGAACTTTAGACTGT | + |
|
Preference number: 3 (lower is better) Translates to: LLLLPNAGIKAI*ANTINLRTLDC Trigger: ACAGTCTAAAGTTCTCAGATTTATAGTGTTTGCTCAGATGGCTTTAATCCCAGCATTAGGAAGGAGAAGCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| CDS-3UTR CCA 90 bp | GAAAACAGGAATGCAGGCAGGCAGCACGTAGAGGGAAGGACAAGGACCTGGATCGCATGTTATACTTCTTaGCGGCCGCGGCGCGTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: ENRNAGRQHVEGRTRTWIACYTS*RPRRVP Trigger: AGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGC...GATCCAGGTCCTTGTCCTTCCCTCTACGTGCTGCCTGCCTGCATTCCTGTTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| CDS-3UTR TCA 90 bp | GAAAACAGGAATGCAGGCAGGCAGCACGTAGAGGGAAGGACAAGGACCTGGATCTGGGGTCCTAGGATATaGCCCCGGCAACATGTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: ENRNAGRQHVEGRTRTWIWGPRI*PRQHVL Trigger: AAGGACATGTTGCCGGGGTCATATCCTAGGACCCCA...GATCCAGGTCCTTGTCCTTCCCTCTACGTGCTGCCTGCCTGCATTCCTGTTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| CDS-3UTR TCA 90 bp | ATGACATCCCAGGACACAGGGGTAGGTGACGTGTCCACACGATTCCTGATGTACTCTGAGTGGTCCCACTaGTACCACGGATCCCTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: MTSQDTGVGDVSTRFLMYSEWSH*YHGSLS Trigger: TGAGAGGGATCCGTGGTATCAGTGGGACCACTCAGA...GTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168083.2 |
||
| CDS-3UTR GCA 90 bp | ATGACATCCCAGGACACAGGGGTAGGTGACGTGTCCACACGATTCCTGATGTACAGTCGCCATACCCCATaGCATCATCGGGGTATGGCT | + |
|
Preference number: 4 (lower is better) Translates to: MTSQDTGVGDVSTRFLMYSRHTP*HHRGMA Trigger: AGCCATACCCCGATGATGGCATGGGGTATGGCGACT...GTACATCAGGAATCGTGTGGACACGTCACCTACCCCTGTGTCCTGGGATGTCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000168083.2 |
||
| 3UTR CAA 72 bp | TGTTCCAAATTGGGAAGAGAGCACCTCCCTTCCCTCTaGGCCCTGGAAATGGGCAACAGCGGATCCTTCACT | + |
|
Preference number: 4 (lower is better) Translates to: CSKLGREHLPSL*ALEMGNSGSFT Trigger: AGTGAAGGATCCGCTGTTGCCCATTTCCAGGGCCAAGAGGGAAGGGAGGTGCTCTCTTCCCAATTTGGAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| CDS-3UTR GCA 90 bp | ATCCACCTGCCTCTGTCCCACCCACCAGGTGCTAGAATTAAAAGCTTGTACCACAGTCGCCATACCCCATaGCATCATCGGGGTATGGCT | + |
|
Preference number: 4 (lower is better) Translates to: IHLPLSHPPGARIKSLYHSRHTP*HHRGMA Trigger: AGCCATACCCCGATGATGGCATGGGGTATGGCGACT...GTGGTACAAGCTTTTAATTCTAGCACCTGGTGGGTGGGACAGAGGCAGGTGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| CDS-3UTR TCA 90 bp | GCACCACATGCAGTGTCTCTGGAAATCAGAAGATGGTGTCAGGTCCTGAGGAGTAGAGATGTTTACACATaGCATCCCAGGACACAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: APHAVSLEIRRWCQVLRSRDVYT*HPRTQG Trigger: CCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCT...ACTCCTCAGGACCTGACACCATCTTCTGATTTCCAGAGACACTGCATGTGGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| CDS-3UTR TCA 90 bp | TTAGACTACAAATGTGGCTACTTTGTCCGTTATTCCACGGCCATCCTGGTGACTCACCCCAGTTCATCCTaGGTTCTGAGTGGTCCCACT | + |
|
Preference number: 4 (lower is better) Translates to: LDYKCGYFVRYSTAILVTHPSSS*VLSGPT Trigger: AGTGGGACCACTCAGAACTCAGGATGAACTGGGGTG...AGTCACCAGGATGGCCGTGGAATAACGGACAAAGTAGCCACATTTGTAGTCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| CDS-3UTR CCA 90 bp | GATTTTATTATGGTTAAGCCTCTAGGAACGAGGGCAAAAAGCCCATCAAGCCTCGCATGTTATACTTCTTaGCGGCCGCGGCGCGTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: DFIMVKPLGTRAKSPSSLACYTS*RPRRVP Trigger: AGGAACGCGCCGCGGCCGCCAAGAAGTATAACATGC...GAGGCTTGATGGGCTTTTTGCCCTCGTTCCTAGAGGCTTAACCATAATAAAATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026222.11 ENSMUST00000168083.2 |
||
| CDS-3UTR CCA 90 bp | GATTTTATTATGGTTAAGCCTCTAGGAACGAGGGCAAAAAGCCCATCAAGCCTCCATGCTGTGATCGGTTaGGGAGCATCGGGTAGTCGC | + |
|
Preference number: 4 (lower is better) Translates to: DFIMVKPLGTRAKSPSSLHAVIG*GASGSR Trigger: GCGACTACCCGATGCTCCCCAACCGATCACAGCATG...GAGGCTTGATGGGCTTTTTGCCCTCGTTCCTAGAGGCTTAACCATAATAAAATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026222.11 ENSMUST00000168083.2 |
||
| CDS-3UTR TCA 90 bp | GATTTTATTATGGTTAAGCCTCTAGGAACGAGGGCAAAAAGCCCATCAAGCCTCTGGGGTCCTAGGATATaGCCCCGGCAACATGTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: DFIMVKPLGTRAKSPSSLWGPRI*PRQHVL Trigger: AAGGACATGTTGCCGGGGTCATATCCTAGGACCCCA...GAGGCTTGATGGGCTTTTTGCCCTCGTTCCTAGAGGCTTAACCATAATAAAATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000026222.11 |
||
| CDS-3UTR TCA 90 bp | GATTTTATTATGGTTAAGCCTCTAGGAACGAGGGCAAAAAGCCCATCAAGCCTCTCTGAGTGGTCCCACTaGTACCACGGATCCCTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: DFIMVKPLGTRAKSPSSLSEWSH*YHGSLS Trigger: TGAGAGGGATCCGTGGTATCAGTGGGACCACTCAGA...GAGGCTTGATGGGCTTTTTGCCCTCGTTCCTAGAGGCTTAACCATAATAAAATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026222.11 ENSMUST00000168083.2 |
||
| CDS-3UTR TCA 90 bp | GATTTTATTATGGTTAAGCCTCTAGGAACGAGGGCAAAAAGCCCATCAAGCCTCCACCCCAGTTCATCCTaGGTTCTGAGTGGTCCCACT | + |
|
Preference number: 4 (lower is better) Translates to: DFIMVKPLGTRAKSPSSLHPSSS*VLSGPT Trigger: AGTGGGACCACTCAGAACTCAGGATGAACTGGGGTG...GAGGCTTGATGGGCTTTTTGCCCTCGTTCCTAGAGGCTTAACCATAATAAAATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026222.11 |
||
| CDS-3UTR GCA 90 bp | GATTTTATTATGGTTAAGCCTCTAGGAACGAGGGCAAAAAGCCCATCAAGCCTCAGTCGCCATACCCCATaGCATCATCGGGGTATGGCT | + |
|
Preference number: 4 (lower is better) Translates to: DFIMVKPLGTRAKSPSSLSRHTP*HHRGMA Trigger: AGCCATACCCCGATGATGGCATGGGGTATGGCGACT...GAGGCTTGATGGGCTTTTTGCCCTCGTTCCTAGAGGCTTAACCATAATAAAATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000026222.11 ENSMUST00000168083.2 |
||
| CDS-3UTR CCA 90 bp | TTAGACTACAAATGTGGCTACTTTGTCCGTTATTCCACGGCCATCCTGGTGACTCCGGCAACATGTCCTTaGTCATATGGAAGGCTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LDYKCGYFVRYSTAILVTPATCP*SYGRLS Trigger: GGAGAGCCTTCCATATGACCAAGGACATGTTGCCGG...AGTCACCAGGATGGCCGTGGAATAACGGACAAAGTAGCCACATTTGTAGTCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| CDS-3UTR TCA 90 bp | CTACTTTGTCCGTTATTCCACGGCCATCCTGGTGACTGTTATTGCTTTCTTATATCTGAGTGGTCCCACTaGTACCACGGATCCCTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: LLCPLFHGHPGDCYCFLISEWSH*YHGSLS Trigger: TGAGAGGGATCCGTGGTATCAGTGGGACCACTCAGA...TATAAGAAAGCAATAACAGTCACCAGGATGGCCGTGGAATAACGGACAAAGTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| CDS-3UTR CCA 90 bp | GATTTTATTATGGTTAAGCCTCTAGGAACGAGGGCAAAAAGCCCATCAAGCCTCCCGGCAACATGTCCTTaGTCATATGGAAGGCTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: DFIMVKPLGTRAKSPSSLPATCP*SYGRLS Trigger: GGAGAGCCTTCCATATGACCAAGGACATGTTGCCGG...GAGGCTTGATGGGCTTTTTGCCCTCGTTCCTAGAGGCTTAACCATAATAAAATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026222.11 |
||
| CDS-3UTR TCA 90 bp | GATTTTATTATGGTTAAGCCTCTAGGAACGAGGGCAAAAAGCCCATCAAGCCTCTGTCCACACGATTCCTaGTGTACATGTCTAGGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: DFIMVKPLGTRAKSPSSLCPHDS*CTCLGP Trigger: GGGACCTAGACATGTACATCAGGAATCGTGTGGACA...GAGGCTTGATGGGCTTTTTGCCCTCGTTCCTAGAGGCTTAACCATAATAAAATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026222.11 |
||
| CDS-3UTR TCA 90 bp | GATTTTATTATGGTTAAGCCTCTAGGAACGAGGGCAAAAAGCCCATCAAGCCTCAGAGATGTTTACACATaGCATCCCAGGACACAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: DFIMVKPLGTRAKSPSSLRDVYT*HPRTQG Trigger: CCCCTGTGTCCTGGGATGTCATGTGTAAACATCTCT...GAGGCTTGATGGGCTTTTTGCCCTCGTTCCTAGAGGCTTAACCATAATAAAATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026222.11 |
||
| 3UTR CAA 72 bp | AGCCACCATGGTTCCTTCCACCAATTCTTACCCTCCTaGAAGGTTAACAGATATCTGCTTGGATTGCCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: SHHGSFHQFLPS*KVNRYLLGLPG Trigger: TCCAGGCAATCCAAGCAGATATCTGTTAACCTTCAAGGAGGGTAAGAATTGGTGGAAGGAACCATGGTGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR CAA 72 bp | TTACCCTCCTTGAAGGTTAACAGATATCTGCTTGGATaGCCTGGAAGCCCCCATAGCCAAGACTTTTTAGTG | + |
|
Preference number: 4 (lower is better) Translates to: LPSLKVNRYLLG*PGSPHSQDFLV Trigger: CACTAAAAAGTCTTGGCTATGGGGGCTTCCAGGCAATCCAAGCAGATATCTGTTAACCTTCAAGGAGGGTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| 3UTR CAA 72 bp | AAAATGGTTTTTAAGGAAAGTGAATCTTGTTCCAAATaGGGAAGAGAGCACCTCCCTTCCCTCTTGGCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: KMVFKESESCSK*GREHLPSLLAL Trigger: CAGGGCCAAGAGGGAAGGGAGGTGCTCTCTTCCCAATTTGGAACAAGATTCACTTTCCTTAAAAACCATTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| CDS-3UTR TCA 90 bp | TATAAATCTGAGAACTTTAGACTGTTACCTCCAAAGGTGACAACTAGAGGTCAGTGTCCACACGATTCCTaGTGTACATGTCTAGGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: YKSENFRLLPPKVTTRGQCPHDS*CTCLGP Trigger: GGGACCTAGACATGTACATCAGGAATCGTGTGGACA...CTGACCTCTAGTTGTCACCTTTGGAGGTAACAGTCTAAAGTTCTCAGATTTATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| CDS CCA 90 bp | TGGCGGCCGCGGCGCGTTCCTCTGGGGTCCTCTCCGTGCCTCCAGTaGCACCACGCCCCGGGTTGTCCTCTGCAGCCATCGGACTCCCAG | + |
|
Preference number: 5 (lower is better) Translates to: WRPRRVPLGSSPCLQ*HHAPGCPLQPSDSQ Trigger: CTGGGAGTCCGATGGCTGCAGAGGACAACCCGGGGCGTGGTGCCACTGGAGGCACGGAGAGGACCCCAGAGGAACGCGCCGCGGCCGCCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168083.2 |
||
| CDS CCA 90 bp | CAGGCACCCGCTTCCCACACCGTGCAGACCTCTCCGTGCCTCCAGTaGCACCACGCCCCGGGTTGTCCTCTGCAGCCATCGGACTCCCAG | + |
|
Preference number: 5 (lower is better) Translates to: QAPASHTVQTSPCLQ*HHAPGCPLQPSDSQ Trigger: CTGGGAGTCCGATGGCTGCAGAGGACAACCCGGGGCGTGGTGCCACTGGAGGCACGGAGAGGTCTGCACGGTGTGGGAAGCGGGTGCCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167027.2 |
||
| CDS CCA 90 bp | CGGCAACATGTCCTTGGTCATATGGAAGGCTCTCCGTGCCTCCAGTaGCACCACGCCCCGGGTTGTCCTCTGCAGCCATCGGACTCCCAG | + |
|
Preference number: 5 (lower is better) Translates to: RQHVLGHMEGSPCLQ*HHAPGCPLQPSDSQ Trigger: CTGGGAGTCCGATGGCTGCAGAGGACAACCCGGGGCGTGGTGCCACTGGAGGCACGGAGAGCCTTCCATATGACCAAGGACATGTTGCCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026222.11 ENSMUST00000171415.8 |
||
| CDS-3UTR CAA 90 bp | GAAAACAGGAATGCAGGCAGGCAGCACGTAGAGGGAAGGACAAGGACCTGGATCCCCGGCAACATGTCCTaGGTCATATGGAAGGCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: ENRNAGRQHVEGRTRTWIPGNMS*VIWKAL Trigger: GAGAGCCTTCCATATGACCAAGGACATGTTGCCGGG...GATCCAGGTCCTTGTCCTTCCCTCTACGTGCTGCCTGCCTGCATTCCTGTTTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171415.8 |
||
| CDS-3UTR CAA 90 bp | GATTTTATTATGGTTAAGCCTCTAGGAACGAGGGCAAAAAGCCCATCAAGCCTCCCCGGCAACATGTCCTaGGTCATATGGAAGGCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: DFIMVKPLGTRAKSPSSLPGNMS*VIWKAL Trigger: GAGAGCCTTCCATATGACCAAGGACATGTTGCCGGG...GAGGCTTGATGGGCTTTTTGCCCTCGTTCCTAGAGGCTTAACCATAATAAAATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026222.11 |
||
| CDS GCA 72 bp | TGGCGGCCGCGGCGCGTTCCTCTGGGGTCCTCTCCGTaGCTCCAGTGGCACCACGCCCCGGGTTGTCCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: WRPRRVPLGSSP*LQWHHAPGCPL Trigger: CAGAGGACAACCCGGGGCGTGGTGCCACTGGAGGCACGGAGAGGACCCCAGAGGAACGCGCCGCGGCCGCCA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168083.2 |
||
| CDS CAA 90 bp | CACCGTGCAGACCTCTCCGTGCCTCCAGTGGCACCACGCCCCGGGTaGTCCTCTGCAGCCATCGGACTCCCAGGGCCGCAGCCCGGGCGG | + |
|
Preference number: 6 (lower is better) Translates to: HRADLSVPPVAPRPG*SSAAIGLPGPQPGR Trigger: CCGCCCGGGCTGCGGCCCTGGGAGTCCGATGGCTGCAGAGGACAACCCGGGGCGTGGTGCCACTGGAGGCACGGAGAGGTCTGCACGGTG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167027.2 |
||
| CDS CAA 90 bp | TCCTCTGGGGTCCTCTCCGTGCCTCCAGTGGCACCACGCCCCGGGTaGTCCTCTGCAGCCATCGGACTCCCAGGGCCGCAGCCCGGGCGG | + |
|
Preference number: 6 (lower is better) Translates to: SSGVLSVPPVAPRPG*SSAAIGLPGPQPGR Trigger: CCGCCCGGGCTGCGGCCCTGGGAGTCCGATGGCTGCAGAGGACAACCCGGGGCGTGGTGCCACTGGAGGCACGGAGAGGACCCCAGAGGA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168083.2 |
||
| CDS CAA 72 bp | AGGCTCTCCGTGCCTCCAGTGGCACCACGCCCCGGGTaGTCCTCTGCAGCCATCGGACTCCCAGGGCCGCAG | + |
|
Preference number: 6 (lower is better) Translates to: RLSVPPVAPRPG*SSAAIGLPGPQ Trigger: CTGCGGCCCTGGGAGTCCGATGGCTGCAGAGGACAACCCGGGGCGTGGTGCCACTGGAGGCACGGAGAGCCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026222.11 ENSMUST00000171415.8 |
||
| CDS CAA 72 bp | GACCTCTCCGTGCCTCCAGTGGCACCACGCCCCGGGTaGTCCTCTGCAGCCATCGGACTCCCAGGGCCGCAG | + |
|
Preference number: 6 (lower is better) Translates to: DLSVPPVAPRPG*SSAAIGLPGPQ Trigger: CTGCGGCCCTGGGAGTCCGATGGCTGCAGAGGACAACCCGGGGCGTGGTGCCACTGGAGGCACGGAGAGGTC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167027.2 |
||
| CDS CAA 72 bp | GTCCTCTCCGTGCCTCCAGTGGCACCACGCCCCGGGTaGTCCTCTGCAGCCATCGGACTCCCAGGGCCGCAG | + |
|
Preference number: 6 (lower is better) Translates to: VLSVPPVAPRPG*SSAAIGLPGPQ Trigger: CTGCGGCCCTGGGAGTCCGATGGCTGCAGAGGACAACCCGGGGCGTGGTGCCACTGGAGGCACGGAGAGGAC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168083.2 |
||
| CDS CAA 90 bp | TCATATGGAAGGCTCTCCGTGCCTCCAGTGGCACCACGCCCCGGGTaGTCCTCTGCAGCCATCGGACTCCCAGGGCCGCAGCCCGGGCGG | + |
|
Preference number: 6 (lower is better) Translates to: SYGRLSVPPVAPRPG*SSAAIGLPGPQPGR Trigger: CCGCCCGGGCTGCGGCCCTGGGAGTCCGATGGCTGCAGAGGACAACCCGGGGCGTGGTGCCACTGGAGGCACGGAGAGCCTTCCATATGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026222.11 ENSMUST00000171415.8 |
||
| CDS CCA 72 bp | GCTTCCCACACCGTGCAGACCTCTCCGTGCCTCCAGTaGCACCACGCCCCGGGTTGTCCTCTGCAGCCATCG | + |
|
Preference number: 6 (lower is better) Translates to: ASHTVQTSPCLQ*HHAPGCPLQPS Trigger: CGATGGCTGCAGAGGACAACCCGGGGCGTGGTGCCACTGGAGGCACGGAGAGGTCTGCACGGTGTGGGAAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167027.2 |
||
| CDS GCA 72 bp | GAAGCAGTAAACTTCAGGCACCCGCTTCCCACACCGTaGAGACCTCTCCGTGCCTCCAGTGGCACCACGCCC | + |
|
Preference number: 6 (lower is better) Translates to: EAVNFRHPLPTP*RPLRASSGTTP Trigger: GGGCGTGGTGCCACTGGAGGCACGGAGAGGTCTGCACGGTGTGGGAAGCGGGTGCCTGAAGTTTACTGCTTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167027.2 |
||
| CDS CCA 72 bp | GTCCTTGGTCATATGGAAGGCTCTCCGTGCCTCCAGTaGCACCACGCCCCGGGTTGTCCTCTGCAGCCATCG | + |
|
Preference number: 6 (lower is better) Translates to: VLGHMEGSPCLQ*HHAPGCPLQPS Trigger: CGATGGCTGCAGAGGACAACCCGGGGCGTGGTGCCACTGGAGGCACGGAGAGCCTTCCATATGACCAAGGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026222.11 ENSMUST00000171415.8 |
||
| CDS CCA 72 bp | CTAGGATATGACCCCGGCAACATGTCCTTGGTCATATaGAAGGCTCTCCGTGCCTCCAGTGGCACCACGCCC | + |
|
Preference number: 6 (lower is better) Translates to: LGYDPGNMSLVI*KALRASSGTTP Trigger: GGGCGTGGTGCCACTGGAGGCACGGAGAGCCTTCCATATGACCAAGGACATGTTGCCGGGGTCATATCCTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026222.11 ENSMUST00000171415.8 |
||