Pregenerated sensors for NDUFB5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027673Ensembl transcript IDs: ENSMUST00000029217.12, ENSMUST00000121778.8, ENSMUST00000122290.2, ENSMUST00000127477.8, ENSMUST00000139593.8, ENSMUST00000154257.8, ENSMUST00000156174.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCGGCTTCACCTAGAGAGAAAATGTTGACGATGCTGGGTCAGCACTaGCAGCCCGTGTCCCCAGAAGCCAGCTTCTCCCAGACTCCTCTA | + |
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Preference number: 1 (lower is better) Translates to: SASPREKMLTMLGQH*QPVSPEASFSQTPL Trigger: TAGAGGAGTCTGGGAGAAGCTGGCTTCTGGGGACACGGGCTGTCAGTGCTGACCCAGCATCGTCAACATTTTCTCTCTAGGTGAAGCCGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029217.12 |
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| 3UTR CCA 90 bp | GCTCACAGGCCTGCAACTCTAGCTTCAGGACATCGGATGCCCTTTTaGCCTCCATGGGCCTACATCCAGGCAGACACATACACAGAGACA | + |
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Preference number: 1 (lower is better) Translates to: AHRPATLASGHRMPF*PPWAYIQADTYTET Trigger: TGTCTCTGTGTATGTGTCTGCCTGGATGTAGGCCCATGGAGGCCAAAAGGGCATCCGATGTCCTGAAGCTAGAGTTGCAGGCCTGTGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| 3UTR CCA 90 bp | TATGGCTTCTGGCTGTTATACAGGGCAGTCTCTAGTGATGTGGGATaGAAAGAAACAGGCAGGTTGTGGAGTGGGCTGCTGTATGCAGAG | + |
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Preference number: 1 (lower is better) Translates to: YGFWLLYRAVSSDVG*KETGRLWSGLLYAE Trigger: CTCTGCATACAGCAGCCCACTCCACAACCTGCCTGTTTCTTTCCATCCCACATCACTAGAGACTGCCCTGTATAACAGCCAGAAGCCATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| 3UTR GCA 90 bp | TGTGGGATGGAAAGAAACAGGCAGGTTGTGGAGTGGGCTGCTGTATaGAGAGTAGCTTCTTTAGGAATTTCTTTCCAGGGCGGGAGAGAT | + |
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Preference number: 1 (lower is better) Translates to: CGMERNRQVVEWAAV*RVASLGISFQGGRD Trigger: ATCTCTCCCGCCCTGGAAAGAAATTCCTAAAGAAGCTACTCTGCATACAGCAGCCCACTCCACAACCTGCCTGTTTCTTTCCATCCCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| 3UTR GCA 90 bp | CTAGTGATGTGGGATGGAAAGAAACAGGCAGGTTGTGGAGTGGGCTaGTGTATGCAGAGTAGCTTCTTTAGGAATTTCTTTCCAGGGCGG | + |
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Preference number: 1 (lower is better) Translates to: LVMWDGKKQAGCGVG*CMQSSFFRNFFPGR Trigger: CCGCCCTGGAAAGAAATTCCTAAAGAAGCTACTCTGCATACAGCAGCCCACTCCACAACCTGCCTGTTTCTTTCCATCCCACATCACTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| 3UTR CAA 90 bp | GGCTCACAGGCCTGCAACTCTAGCTTCAGGACATCGGATGCCCTTTaGGCCTCCATGGGCCTACATCCAGGCAGACACATACACAGAGAC | + |
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Preference number: 2 (lower is better) Translates to: GSQACNSSFRTSDAL*ASMGLHPGRHIHRD Trigger: GTCTCTGTGTATGTGTCTGCCTGGATGTAGGCCCATGGAGGCCAAAAGGGCATCCGATGTCCTGAAGCTAGAGTTGCAGGCCTGTGAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| 3UTR-3UTR TCA 90 bp | ACAGAGACTAAGAGGGAGGGGGAGGGCATTCCTCTCAGTATGAGCTATCATCCCCAGACATCCAACTTCTaGAGCTGCGCTATTCTTCCC | + |
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Preference number: 2 (lower is better) Translates to: TETKREGEGIPLSMSYHPQTSNF*SCAILP Trigger: GGGAAGAATAGCGCAGCTTCAGAAGTTGGATGTCTG...GGGATGATAGCTCATACTGAGAGGAATGCCCTCCCCCTCCCTCTTAGTCTCTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| 3UTR-3UTR CCA 90 bp | ATGGAAAGAAACAGGCAGGTTGTGGAGTGGGCTGCTGTATGCAGAGTAGCTTCTTGCTGTATTCATGTCTaGTGGCTCACAGGCCTGCAA | + |
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Preference number: 2 (lower is better) Translates to: MERNRQVVEWAAVCRVASCCIHV*WLTGLQ Trigger: TTGCAGGCCTGTGAGCCACCAGACATGAATACAGCA...AGAAGCTACTCTGCATACAGCAGCCCACTCCACAACCTGCCTGTTTCTTTCCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| 3UTR-3UTR CCA 90 bp | GCTAATGACATTCTCTCTAGAAACAGGTACACAGGGGCACATATGGCTTCTGGCAGGCAGGTTGTGGAGTaGGCTGCTGTATGCAGAGTA | + |
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Preference number: 2 (lower is better) Translates to: ANDILSRNRYTGAHMASGRQVVE*AAVCRV Trigger: TACTCTGCATACAGCAGCCCACTCCACAACCTGCCT...GCCAGAAGCCATATGTGCCCCTGTGTACCTGTTTCTAGAGAGAATGTCATTAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| 3UTR-3UTR CCA 90 bp | GGACACACTGTTCTTGGACAGACAAATGAATCATCAGTTGTCAGGAGTTGCCTTCTCCTTTTCAGGGGTTaGAAATTGATACCAGGGTCC | + |
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Preference number: 2 (lower is better) Translates to: GHTVLGQTNESSVVRSCLLLFRG*KLIPGS Trigger: GGACCCTGGTATCAATTTCCAACCCCTGAAAAGGAG...AAGGCAACTCCTGACAACTGATGATTCATTTGTCTGTCCAAGAACAGTGTGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029217.12 |
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| 3UTR TCA 72 bp | CCTAGAGAGAAAATGTTGACGATGCTGGGTCAGCACTaGCAGCCCGTGTCCCCAGAAGCCAGCTTCTCCCAG | + |
|
Preference number: 3 (lower is better) Translates to: PREKMLTMLGQH*QPVSPEASFSQ Trigger: CTGGGAGAAGCTGGCTTCTGGGGACACGGGCTGTCAGTGCTGACCCAGCATCGTCAACATTTTCTCTCTAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029217.12 |
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| 3UTR TCA 72 bp | AGACTAAGAGGGAGGGGGAGGGCATTCCTCTCAGTATaGGCTATCATCCCCCAGTCAGCAACAGAGTCGCCC | + |
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Preference number: 3 (lower is better) Translates to: RLRGRGRAFLSV*AIIPQSATESP Trigger: GGGCGACTCTGTTGCTGACTGGGGGATGATAGCTCATACTGAGAGGAATGCCCTCCCCCTCCCTCTTAGTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| 3UTR GCA 72 bp | CAGGGCGGGAGAGATGGTTCAGCAGTTAAGCGTACTTaGTGTATTCATGTCTGGTGGCTCACAGGCCTGCAA | + |
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Preference number: 3 (lower is better) Translates to: QGGRDGSAVKRT*CIHVWWLTGLQ Trigger: TTGCAGGCCTGTGAGCCACCAGACATGAATACAGCAAGTACGCTTAACTGCTGAACCATCTCTCCCGCCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| 3UTR CCA 72 bp | CTAGCTTCAGGACATCGGATGCCCTTTTGGCCTCCATaGGCCTACATCCAGGCAGACACATACACAGAGACA | + |
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Preference number: 3 (lower is better) Translates to: LASGHRMPFWPP*AYIQADTYTET Trigger: TGTCTCTGTGTATGTGTCTGCCTGGATGTAGGCCCATGGAGGCCAAAAGGGCATCCGATGTCCTGAAGCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| 3UTR CCA 72 bp | TGGCTGTTATACAGGGCAGTCTCTAGTGATGTGGGATaGAAAGAAACAGGCAGGTTGTGGAGTGGGCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: WLLYRAVSSDVG*KETGRLWSGLL Trigger: CAGCAGCCCACTCCACAACCTGCCTGTTTCTTTCCATCCCACATCACTAGAGACTGCCCTGTATAACAGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| 3UTR CCA 72 bp | GCTTCTGGCTGTTATACAGGGCAGTCTCTAGTGATGTaGGATGGAAAGAAACAGGCAGGTTGTGGAGTGGGC | + |
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Preference number: 3 (lower is better) Translates to: ASGCYTGQSLVM*DGKKQAGCGVG Trigger: GCCCACTCCACAACCTGCCTGTTTCTTTCCATCCCACATCACTAGAGACTGCCCTGTATAACAGCCAGAAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| 3UTR-3UTR CAA 90 bp | GGACACACTGTTCTTGGACAGACAAATGAATCATCAGTTGTCAGGAGTTGCCTTCCTAGAGAGAAAATGTaGACGATGCTGGGTCAGCAC | + |
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Preference number: 3 (lower is better) Translates to: GHTVLGQTNESSVVRSCLPREKM*TMLGQH Trigger: GTGCTGACCCAGCATCGTCAACATTTTCTCTCTAGG...AAGGCAACTCCTGACAACTGATGATTCATTTGTCTGTCCAAGAACAGTGTGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029217.12 |
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| 3UTR TCA 72 bp | CCCACTAGAGGGACACACTGTTCTTGGACAGACAAATaGATCATCAGTTGTCAGGAGTTGCCTTTGGAGAAT | + |
|
Preference number: 3 (lower is better) Translates to: PTRGTHCSWTDK*IISCQELPLEN Trigger: ATTCTCCAAAGGCAACTCCTGACAACTGATGATTCATTTGTCTGTCCAAGAACAGTGTGTCCCTCTAGTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029217.12 |
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| 3UTR GCA 72 bp | TGGGATGGAAAGAAACAGGCAGGTTGTGGAGTGGGCTaGTGTATGCAGAGTAGCTTCTTTAGGAATTTCTTT | + |
|
Preference number: 3 (lower is better) Translates to: WDGKKQAGCGVG*CMQSSFFRNFF Trigger: AAAGAAATTCCTAAAGAAGCTACTCTGCATACAGCAGCCCACTCCACAACCTGCCTGTTTCTTTCCATCCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| CDS-3UTR GCA 90 bp | CACCTCGGGCACGCATCAGCCTTCGAACTTCCTGCTCCTTTAACCGTAACTCAGCGACAAACAGTCTCTTaGCATGGTCCCCACTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: HLGHASAFELPAPLTVTQRQTVS*HGPHCA Trigger: GGCACAGTGGGGACCATGGCAAGAGACTGTTTGTCG...CTGAGTTACGGTTAAAGGAGCAGGAAGTTCGAAGGCTGATGCGTGCCCGAGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029217.12 |
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| 3UTR CAA 72 bp | GCCTGCAACTCTAGCTTCAGGACATCGGATGCCCTTTaGGCCTCCATGGGCCTACATCCAGGCAGACACATA | + |
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Preference number: 4 (lower is better) Translates to: ACNSSFRTSDAL*ASMGLHPGRHI Trigger: TATGTGTCTGCCTGGATGTAGGCCCATGGAGGCCAAAAGGGCATCCGATGTCCTGAAGCTAGAGTTGCAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| CDS-3UTR CCA 90 bp | TCTAGTGATGTGGGATGGAAAGAAACAGGCAGGTTGTGGAGTGGGCTGCTGTATAACAGTCTCTTGCCATaGTCCCCACTGTGCCGCACA | + |
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Preference number: 4 (lower is better) Translates to: SSDVGWKETGRLWSGLLYNSLLP*SPLCRT Trigger: TGTGCGGCACAGTGGGGACCATGGCAAGAGACTGTT...ATACAGCAGCCCACTCCACAACCTGCCTGTTTCTTTCCATCCCACATCACTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| CDS-3UTR GCA 90 bp | TGCTGTATGCAGAGTAGCTTCTTTAGGAATTTCTTTCCAGGGCGGGAGAGATGGCGACAAACAGTCTCTTaGCATGGTCCCCACTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: CCMQSSFFRNFFPGRERWRQTVS*HGPHCA Trigger: GGCACAGTGGGGACCATGGCAAGAGACTGTTTGTCG...CCATCTCTCCCGCCCTGGAAAGAAATTCCTAAAGAAGCTACTCTGCATACAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| CDS-3UTR GCA 90 bp | ACATCACCTGAACCTCATGAAGAACCAGCCACAGAATCTTGTGTACATCAGAGCCGACAAACAGTCTCTTaGCATGGTCCCCACTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: TSPEPHEEPATESCVHQSRQTVS*HGPHCA Trigger: GGCACAGTGGGGACCATGGCAAGAGACTGTTTGTCG...GCTCTGATGTACACAAGATTCTGTGGCTGGTTCTTCATGAGGTTCAGGTGATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127477.8 |
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| CDS-3UTR GCA 90 bp | CAGTTCCTGAATATTCACAGGACCGCTGCACCTTCCACCTGCCAGACAACGGCATCAGTTGTCAGGAGTTaGCTTTGGAGAATGATCAAT | + |
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Preference number: 4 (lower is better) Translates to: QFLNIHRTAAPSTCQTTASVVRS*LWRMIN Trigger: ATTGATCATTCTCCAAAGGCAACTCCTGACAACTGA...TGCCGTTGTCTGGCAGGTGGAAGGTGCAGCGGTCCTGTGAATATTCAGGAACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127477.8 |
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| CDS-3UTR CCA 90 bp | CAACGGCATCAGCAGCTTATCAACAGTGTCACTTTAGGAATTCACAACTTCCCAAACAGTCTCTTGCCATaGTCCCCACTGTGCCGCACA | + |
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Preference number: 4 (lower is better) Translates to: QRHQQLINSVTLGIHNFPNSLLP*SPLCRT Trigger: TGTGCGGCACAGTGGGGACCATGGCAAGAGACTGTT...TGGGAAGTTGTGAATTCCTAAAGTGACACTGTTGATAAGCTGCTGATGCCGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127477.8 |
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| 3UTR CAA 72 bp | AGAATGATCAATGAACTCCTTTTCAGGGGTTGGAAATaGATACCAGGGTCCATCACCTCGGGCACGCATCAG | + |
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Preference number: 4 (lower is better) Translates to: RMINELLFRGWK*IPGSITSGTHQ Trigger: CTGATGCGTGCCCGAGGTGATGGACCCTGGTATCAATTTCCAACCCCTGAAAAGGAGTTCATTGATCATTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029217.12 |
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| CDS-3UTR CCA 90 bp | TCATCAGTTGTCAGGAGTTGCCTTTGGAGAATGATCAATGAACTCCTTTTCAGGAACAGTCTCTTGCCATaGTCCCCACTGTGCCGCACA | + |
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Preference number: 4 (lower is better) Translates to: SSVVRSCLWRMINELLFRNSLLP*SPLCRT Trigger: TGTGCGGCACAGTGGGGACCATGGCAAGAGACTGTT...CCTGAAAAGGAGTTCATTGATCATTCTCCAAAGGCAACTCCTGACAACTGATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029217.12 |
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| CDS-3UTR CCA 90 bp | TCTGGGATTTCTGCAAGCTCGGCTTCACCAATAAATATGTTCACCAGTGTTATGAACAGTCTCTTGCCATaGTCCCCACTGTGCCGCACA | + |
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Preference number: 4 (lower is better) Translates to: SGISASSASPINMFTSVMNSLLP*SPLCRT Trigger: TGTGCGGCACAGTGGGGACCATGGCAAGAGACTGTT...CATAACACTGGTGAACATATTTATTGGTGAAGCCGAGCTTGCAGAAATCCCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156174.2 |
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| CDS-3UTR TCA 90 bp | TGCAGAGTAGCTTCTTTAGGAATTTCTTTCCAGGGCGGGAGAGATGGTTCAGCAAGTATAAAGAAGGCTTaGCGACAAACAGTCTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: CRVASLGISFQGGRDGSASIKKA*RQTVSC Trigger: GCAAGAGACTGTTTGTCGTCAAGCCTTCTTTATACT...TGCTGAACCATCTCTCCCGCCCTGGAAAGAAATTCCTAAAGAAGCTACTCTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| CDS-3UTR GCA 90 bp | TCTGCAAGCTCGGCTTCACCAATAAATATGTTCACCAGTGTTATGCCAATTATACGACAAACAGTCTCTTaGCATGGTCCCCACTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: SASSASPINMFTSVMPIIRQTVS*HGPHCA Trigger: GGCACAGTGGGGACCATGGCAAGAGACTGTTTGTCG...TATAATTGGCATAACACTGGTGAACATATTTATTGGTGAAGCCGAGCTTGCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156174.2 |
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| CDS-3UTR GCA 90 bp | AGAGTATTTATTCATTTCTTCCCACTAGAGGGACACACTGTTCTTGGACAGACAGCCTTCTGGGATTTCTaGAAGCTCGGCTTCACCAAT | + |
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Preference number: 4 (lower is better) Translates to: RVFIHFFPLEGHTVLGQTAFWDF*KLGFTN Trigger: ATTGGTGAAGCCGAGCTTGCAGAAATCCCAGAAGGC...TGTCTGTCCAAGAACAGTGTGTCCCTCTAGTGGGAAGAAATGAATAAATACTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000122290.2 ENSMUST00000127477.8 |
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| CDS-3UTR TCA 90 bp | AGTGTCACTTTAGGAATTCACAACTTCCCAGACCTCCAGGTTTCATTACTACCCAGTATAAAGAAGGCTTaGCGACAAACAGTCTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: SVTLGIHNFPDLQVSLLPSIKKA*RQTVSC Trigger: GCAAGAGACTGTTTGTCGTCAAGCCTTCTTTATACT...GGGTAGTAATGAAACCTGGAGGTCTGGGAAGTTGTGAATTCCTAAAGTGACACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127477.8 |
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| CDS-3UTR TCA 90 bp | TTACTACCCTGTAAATCCCAACAGATGAAGCTGAAAGGCCCACAGAGAACACATGTTGCCTTTGGAGAATaGTCAATGAACTCCTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: LLPCKSQQMKLKGPQRTHVAFGE*SMNSFS Trigger: TGAAAAGGAGTTCATTGATCATTCTCCAAAGGCAAC...ATGTGTTCTCTGTGGGCCTTTCAGCTTCATCTGTTGGGATTTACAGGGTAGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127477.8 |
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| CDS-3UTR CCA 90 bp | ATACAGAGTATTTATTCATTTCTTCCCACTAGAGGGACACACTGTTCTTGGACACTCCTTTTCAGGGGTTaGAAATTGATACCAGGGTCC | + |
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Preference number: 4 (lower is better) Translates to: IQSIYSFLPTRGTHCSWTLLFRG*KLIPGS Trigger: GGACCCTGGTATCAATTTCCAACCCCTGAAAAGGAG...TGTCCAAGAACAGTGTGTCCCTCTAGTGGGAAGAAATGAATAAATACTCTGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000122290.2 ENSMUST00000127477.8 |
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| CDS-3UTR TCA 90 bp | AGAGTATTTATTCATTTCTTCCCACTAGAGGGACACACTGTTCTTGGACAGACAAGTATAAAGAAGGCTTaGCGACAAACAGTCTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: RVFIHFFPLEGHTVLGQTSIKKA*RQTVSC Trigger: GCAAGAGACTGTTTGTCGTCAAGCCTTCTTTATACT...TGTCTGTCCAAGAACAGTGTGTCCCTCTAGTGGGAAGAAATGAATAAATACTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029217.12 ENSMUST00000127477.8 |
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| CDS-3UTR TCA 90 bp | TACAGAGTATTTATTCATTTCTTCCCACTAGAGGGACACACTGTTCTTGGACAGTTGGAGAATGATCAATaGACTCCTTTTCAGGGGTTG | + |
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Preference number: 4 (lower is better) Translates to: YRVFIHFFPLEGHTVLGQLENDQ*TPFQGL Trigger: CAACCCCTGAAAAGGAGTTCATTGATCATTCTCCAA...CTGTCCAAGAACAGTGTGTCCCTCTAGTGGGAAGAAATGAATAAATACTCTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000122290.2 ENSMUST00000127477.8 |
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| CDS-3UTR TCA 90 bp | AAGCTCGGCTTCACCAATAAATATGTTCACCAGTGTTATGCCAATTATAACTGGAGTATAAAGAAGGCTTaGCGACAAACAGTCTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: KLGFTNKYVHQCYANYNWSIKKA*RQTVSC Trigger: GCAAGAGACTGTTTGTCGTCAAGCCTTCTTTATACT...CCAGTTATAATTGGCATAACACTGGTGAACATATTTATTGGTGAAGCCGAGCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156174.2 |
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| CDS-3UTR TCA 90 bp | AGAGTATTTATTCATTTCTTCCCACTAGAGGGACACACTGTTCTTGGACAGACAGTTGCCTTTGGAGAATaGTCAATGAACTCCTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: RVFIHFFPLEGHTVLGQTVAFGE*SMNSFS Trigger: TGAAAAGGAGTTCATTGATCATTCTCCAAAGGCAAC...TGTCTGTCCAAGAACAGTGTGTCCCTCTAGTGGGAAGAAATGAATAAATACTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000122290.2 ENSMUST00000127477.8 |
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| CDS-3UTR CCA 90 bp | AGTATTTATTCATTTCTTCCCACTAGAGGGACACACTGTTCTTGGACAGACAAAGTCAGGAGTTGCCTTTaGAGAATGATCAATGAACTC | + |
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Preference number: 4 (lower is better) Translates to: SIYSFLPTRGTHCSWTDKVRSCL*RMINEL Trigger: GAGTTCATTGATCATTCTCCAAAGGCAACTCCTGAC...TTTGTCTGTCCAAGAACAGTGTGTCCCTCTAGTGGGAAGAAATGAATAAATACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000122290.2 ENSMUST00000127477.8 |
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| CDS-3UTR GCA 90 bp | GTATTTATTCATTTCTTCCCACTAGAGGGACACACTGTTCTTGGACAGACAAATTCAGTTGTCAGGAGTTaGCTTTGGAGAATGATCAAT | + |
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Preference number: 4 (lower is better) Translates to: VFIHFFPLEGHTVLGQTNSVVRS*LWRMIN Trigger: ATTGATCATTCTCCAAAGGCAACTCCTGACAACTGA...ATTTGTCTGTCCAAGAACAGTGTGTCCCTCTAGTGGGAAGAAATGAATAAATAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000122290.2 ENSMUST00000127477.8 |
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| CDS-3UTR CCA 90 bp | AAGAACCAGCCACAGAATCTTGTGTACATCAGAGCAAAAATACAGAGTATTTATGTCAGGAGTTGCCTTTaGAGAATGATCAATGAACTC | + |
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Preference number: 4 (lower is better) Translates to: KNQPQNLVYIRAKIQSIYVRSCL*RMINEL Trigger: GAGTTCATTGATCATTCTCCAAAGGCAACTCCTGAC...ATAAATACTCTGTATTTTTGCTCTGATGTACACAAGATTCTGTGGCTGGTTCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127477.8 |
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| CDS GCA 90 bp | AAAGAAGGCTTGACGACAAACAGTCTCTTGCCATGGTCCCCACTGTaGCGCACAGGAGCCGCGTCTCCGAGGCCGCCACCCACCGACAGT | + |
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Preference number: 5 (lower is better) Translates to: KEGLTTNSLLPWSPL*RTGAASPRPPPTDS Trigger: ACTGTCGGTGGGTGGCGGCCTCGGAGACGCGGCTCCTGTGCGGCACAGTGGGGACCATGGCAAGAGACTGTTTGTCGTCAAGCCTTCTTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029217.12 ENSMUST00000156174.2 |
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| CDS CCA 90 bp | CTTGCCATGGTCCCCACTGTGCCGCACAGGAGCTGGCAAGTGACCTaGGGACTGACAGCACTGAAGTCGGGATGGAGACAAGGTGCTGGT | + |
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Preference number: 5 (lower is better) Translates to: LAMVPTVPHRSWQVT*GLTALKSGWRQGAG Trigger: ACCAGCACCTTGTCTCCATCCCGACTTCAGTGCTGTCAGTCCCCAGGTCACTTGCCAGCTCCTGTGCGGCACAGTGGGGACCATGGCAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139593.8 |
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| CDS CCA 90 bp | GACAAACAGTCTCTTGCCATGGTCCCCACTGTGCCGCACAGGAGCTaGCAAGTGACCTGGGGACTGACAGCACTGAAGTCGGGATGGAGA | + |
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Preference number: 5 (lower is better) Translates to: DKQSLAMVPTVPHRS*QVTWGLTALKSGWR Trigger: TCTCCATCCCGACTTCAGTGCTGTCAGTCCCCAGGTCACTTGCCAGCTCCTGTGCGGCACAGTGGGGACCATGGCAAGAGACTGTTTGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139593.8 |
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| CDS GCA 90 bp | AAAGAAGGCTTGACGACAAACAGTCTCTTGCCATGGTCCCCACTGTaGCGCACAGGAGCGACAGTCTTCGGAAAGCTCCGCGTGAGAAAA | + |
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Preference number: 5 (lower is better) Translates to: KEGLTTNSLLPWSPL*RTGATVFGKLRVRK Trigger: TTTTCTCACGCGGAGCTTTCCGAAGACTGTCGCTCCTGTGCGGCACAGTGGGGACCATGGCAAGAGACTGTTTGTCGTCAAGCCTTCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000121778.8 ENSMUST00000127477.8 ENSMUST00000154257.8 |
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| CDS CCA 90 bp | GCTCACAGGCCTGCAACTCTAGCTTCAGGACATCGGATGCCCTTTTaGCCTCCATGGGCCGTAACTCAGCCTTTTCAGATTCAATCTGGA | + |
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Preference number: 5 (lower is better) Translates to: AHRPATLASGHRMPF*PPWAVTQPFQIQSG Trigger: TCCAGATTGAATCTGAAAAGGCTGAGTTACGGCCCATGGAGGCCAAAAGGGCATCCGATGTCCTGAAGCTAGAGTTGCAGGCCTGTGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121778.8 |
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| CDS-3UTR CAA 90 bp | TTGCTGTATTCATGTCTGGTGGCTCACAGGCCTGCAACTCTAGCTTCAGGACATACGACAAACAGTCTCTaGCCATGGTCCCCACTGTGC | + |
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Preference number: 5 (lower is better) Translates to: LLYSCLVAHRPATLASGHTTNSL*PWSPLC Trigger: GCACAGTGGGGACCATGGCAAGAGACTGTTTGTCGT...ATGTCCTGAAGCTAGAGTTGCAGGCCTGTGAGCCACCAGACATGAATACAGCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154257.8 |
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| CDS TCA 90 bp | ATTTCATTAACCTCAAGAAGCGAGCGTCATAGTATAAAGAAGGCTTaGCGACAAACAGTCTCTTGCCATGGTCCCCACTGTGCCGCACAG | + |
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Preference number: 5 (lower is better) Translates to: ISLTSRSERHSIKKA*RQTVSCHGPHCAAQ Trigger: CTGTGCGGCACAGTGGGGACCATGGCAAGAGACTGTTTGTCGTCAAGCCTTCTTTATACTATGACGCTCGCTTCTTGAGGTTAATGAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000121778.8 ENSMUST00000127477.8 ENSMUST00000139593.8 ENSMUST00000154257.8 |
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| CDS GCA 90 bp | AGTGACCTGGGGACTGACAGCACTGAAGTCGGGATGGAGACAAGGTaGTGGTTTCTTTGTATGAATGTTTTGCTTGCATGTTTGTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: SDLGTDSTEVGMETR*WFLCMNVLLACLSV Trigger: CACAGACAAACATGCAAGCAAAACATTCATACAAAGAAACCAGCACCTTGTCTCCATCCCGACTTCAGTGCTGTCAGTCCCCAGGTCACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139593.8 |
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| CDS-3UTR CAA 90 bp | AGAGTATTTATTCATTTCTTCCCACTAGAGGGACACACTGTTCTTGGACAGACAACGACAAACAGTCTCTaGCCATGGTCCCCACTGTGC | + |
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Preference number: 5 (lower is better) Translates to: RVFIHFFPLEGHTVLGQTTTNSL*PWSPLC Trigger: GCACAGTGGGGACCATGGCAAGAGACTGTTTGTCGT...TGTCTGTCCAAGAACAGTGTGTCCCTCTAGTGGGAAGAAATGAATAAATACTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029217.12 ENSMUST00000127477.8 |
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| CDS-3UTR CAA 90 bp | ATACAGAGTATTTATTCATTTCTTCCCACTAGAGGGACACACTGTTCTTGGACAACGACAAACAGTCTCTaGCCATGGTCCCCACTGTGC | + |
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Preference number: 5 (lower is better) Translates to: IQSIYSFLPTRGTHCSWTTTNSL*PWSPLC Trigger: GCACAGTGGGGACCATGGCAAGAGACTGTTTGTCGT...TGTCCAAGAACAGTGTGTCCCTCTAGTGGGAAGAAATGAATAAATACTCTGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029217.12 ENSMUST00000127477.8 |
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| CDS-3UTR CAA 90 bp | AATAAATATGTTCACCAGTGTTATGCCAATTATAACTGGGATCCCAGTCAACATACGACAAACAGTCTCTaGCCATGGTCCCCACTGTGC | + |
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Preference number: 5 (lower is better) Translates to: NKYVHQCYANYNWDPSQHTTNSL*PWSPLC Trigger: GCACAGTGGGGACCATGGCAAGAGACTGTTTGTCGT...ATGTTGACTGGGATCCCAGTTATAATTGGCATAACACTGGTGAACATATTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029217.12 ENSMUST00000156174.2 |
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| CDS GCA 72 bp | TTGACGACAAACAGTCTCTTGCCATGGTCCCCACTGTaGCGCACAGGAGCCGCGTCTCCGAGGCCGCCACCC | + |
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Preference number: 6 (lower is better) Translates to: LTTNSLLPWSPL*RTGAASPRPPP Trigger: GGGTGGCGGCCTCGGAGACGCGGCTCCTGTGCGGCACAGTGGGGACCATGGCAAGAGACTGTTTGTCGTCAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029217.12 ENSMUST00000156174.2 |
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| CDS CCA 72 bp | GTCCCCACTGTGCCGCACAGGAGCTGGCAAGTGACCTaGGGACTGACAGCACTGAAGTCGGGATGGAGACAA | + |
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Preference number: 6 (lower is better) Translates to: VPTVPHRSWQVT*GLTALKSGWRQ Trigger: TTGTCTCCATCCCGACTTCAGTGCTGTCAGTCCCCAGGTCACTTGCCAGCTCCTGTGCGGCACAGTGGGGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139593.8 |
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| CDS CCA 72 bp | TCTCTTGCCATGGTCCCCACTGTGCCGCACAGGAGCTaGCAAGTGACCTGGGGACTGACAGCACTGAAGTCG | + |
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Preference number: 6 (lower is better) Translates to: SLAMVPTVPHRS*QVTWGLTALKS Trigger: CGACTTCAGTGCTGTCAGTCCCCAGGTCACTTGCCAGCTCCTGTGCGGCACAGTGGGGACCATGGCAAGAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139593.8 |
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| CDS GCA 72 bp | TTGACGACAAACAGTCTCTTGCCATGGTCCCCACTGTaGCGCACAGGAGCGACAGTCTTCGGAAAGCTCCGC | + |
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Preference number: 6 (lower is better) Translates to: LTTNSLLPWSPL*RTGATVFGKLR Trigger: GCGGAGCTTTCCGAAGACTGTCGCTCCTGTGCGGCACAGTGGGGACCATGGCAAGAGACTGTTTGTCGTCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000121778.8 ENSMUST00000127477.8 ENSMUST00000154257.8 |
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| CDS CAA 90 bp | GGCTCACAGGCCTGCAACTCTAGCTTCAGGACATCGGATGCCCTTTaGGCCTCCATGGGCCGTAACTCAGCCTTTTCAGATTCAATCTGG | + |
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Preference number: 6 (lower is better) Translates to: GSQACNSSFRTSDAL*ASMGRNSAFSDSIW Trigger: CCAGATTGAATCTGAAAAGGCTGAGTTACGGCCCATGGAGGCCAAAAGGGCATCCGATGTCCTGAAGCTAGAGTTGCAGGCCTGTGAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121778.8 |
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| CDS CCA 72 bp | CTAGCTTCAGGACATCGGATGCCCTTTTGGCCTCCATaGGCCGTAACTCAGCCTTTTCAGATTCAATCTGGA | + |
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Preference number: 6 (lower is better) Translates to: LASGHRMPFWPP*AVTQPFQIQSG Trigger: TCCAGATTGAATCTGAAAAGGCTGAGTTACGGCCCATGGAGGCCAAAAGGGCATCCGATGTCCTGAAGCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121778.8 |
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| CDS GCA 72 bp | GGGACTGACAGCACTGAAGTCGGGATGGAGACAAGGTaGTGGTTTCTTTGTATGAATGTTTTGCTTGCATGT | + |
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Preference number: 6 (lower is better) Translates to: GTDSTEVGMETR*WFLCMNVLLAC Trigger: ACATGCAAGCAAAACATTCATACAAAGAAACCAGCACCTTGTCTCCATCCCGACTTCAGTGCTGTCAGTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139593.8 |
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| CDS GCA 72 bp | GACAAGGTGCTGGTTTCTTTGTATGAATGTTTTGCTTaGATGTTTGTCTGTGTACATGTAGGCCCAGTGTCC | + |
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Preference number: 6 (lower is better) Translates to: DKVLVSLYECFA*MFVCVHVGPVS Trigger: GGACACTGGGCCTACATGTACACAGACAAACATGCAAGCAAAACATTCATACAAAGAAACCAGCACCTTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139593.8 |
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| CDS CCA 72 bp | ACTGACAGCACTGAAGTCGGGATGGAGACAAGGTGCTaGTTTCTTTGTATGAATGTTTTGCTTGCATGTTTG | + |
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Preference number: 6 (lower is better) Translates to: TDSTEVGMETRC*FLCMNVLLACL Trigger: CAAACATGCAAGCAAAACATTCATACAAAGAAACCAGCACCTTGTCTCCATCCCGACTTCAGTGCTGTCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139593.8 |
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