Pregenerated sensors for NDUFB4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022820Ensembl transcript IDs: ENSMUST00000023514.4
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCAGGAAAGGTGCAGACACTGAGCTGCTCAGGGTTCTCTGAGCTGTaGTTTCCGACTCTGACTACTGTCCCCTCAGGGCGCACCCCAGCT | + |
|
Preference number: 1 (lower is better) Translates to: AGKVQTLSCSGFSEL*FPTLTTVPSGRTPA Trigger: AGCTGGGGTGCGCCCTGAGGGGACAGTAGTCAGAGTCGGAAAGCACAGCTCAGAGAACCCTGAGCAGCTCAGTGTCTGCACCTTTCCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR CCA 90 bp | TGTGTCACGCTCGCTGCCACCTTCTGCTGTGCTCACACAGAAGGCTaGAGACGCGCAAGGACTCAGGCAGGAAAGGTGCAGACACTGAGC | + |
|
Preference number: 1 (lower is better) Translates to: CVTLAATFCCAHTEG*RRARTQAGKVQTLS Trigger: GCTCAGTGTCTGCACCTTTCCTGCCTGAGTCCTTGCGCGTCTCCAGCCTTCTGTGTGAGCACAGCAGAAGGTGGCAGCGAGCGTGACACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR TCA 90 bp | GACTCAGGCAGGAAAGGTGCAGACACTGAGCTGCTCAGGGTTCTCTaGGCTGTGCTTTCCGACTCTGACTACTGTCCCCTCAGGGCGCAC | + |
|
Preference number: 1 (lower is better) Translates to: DSGRKGADTELLRVL*AVLSDSDYCPLRAH Trigger: GTGCGCCCTGAGGGGACAGTAGTCAGAGTCGGAAAGCACAGCTCAGAGAACCCTGAGCAGCTCAGTGTCTGCACCTTTCCTGCCTGAGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR GCA 90 bp | CCAAGGATCTGCAATGTGTGTCACGCTCGCTGCCACCTTCTGCTGTaGTCACACAGAAGGCTGGAGACGCGCAAGGACTCAGGCAGGAAA | + |
|
Preference number: 1 (lower is better) Translates to: PRICNVCHARCHLLL*SHRRLETRKDSGRK Trigger: TTTCCTGCCTGAGTCCTTGCGCGTCTCCAGCCTTCTGTGTGAGCACAGCAGAAGGTGGCAGCGAGCGTGACACACATTGCAGATCCTTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR GCA 90 bp | TGGAGACGCGCAAGGACTCAGGCAGGAAAGGTGCAGACACTGAGCTaGTCAGGGTTCTCTGAGCTGTGCTTTCCGACTCTGACTACTGTC | + |
|
Preference number: 1 (lower is better) Translates to: WRRARTQAGKVQTLS*SGFSELCFPTLTTV Trigger: GACAGTAGTCAGAGTCGGAAAGCACAGCTCAGAGAACCCTGAGCAGCTCAGTGTCTGCACCTTTCCTGCCTGAGTCCTTGCGCGTCTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR-3UTR TCA 90 bp | ACCTTCTGCTGTGCTCACACAGAAGGCTGGAGACGCGCAAGGACTCAGGCAGGATGTGCTTTCCGACTCTaGCTACTGTCCCCTCAGGGC | + |
|
Preference number: 2 (lower is better) Translates to: TFCCAHTEGWRRARTQAGCAFRL*LLSPQG Trigger: GCCCTGAGGGGACAGTAGTCAGAGTCGGAAAGCACA...TCCTGCCTGAGTCCTTGCGCGTCTCCAGCCTTCTGTGTGAGCACAGCAGAAGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR-3UTR TCA 90 bp | CTCGCTGCCACCTTCTGCTGTGCTCACACAGAAGGCTGGAGACGCGCAAGGACTCTGCTCAGGGTTCTCTaGGCTGTGCTTTCCGACTCT | + |
|
Preference number: 2 (lower is better) Translates to: LAATFCCAHTEGWRRARTLLRVL*AVLSDS Trigger: AGAGTCGGAAAGCACAGCTCAGAGAACCCTGAGCAG...AGTCCTTGCGCGTCTCCAGCCTTCTGTGTGAGCACAGCAGAAGGTGGCAGCGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR-3UTR GCA 90 bp | GCCACCTTCTGCTGTGCTCACACAGAAGGCTGGAGACGCGCAAGGACTCAGGCAGTGCAGACACTGAGCTaGTCAGGGTTCTCTGAGCTG | + |
|
Preference number: 2 (lower is better) Translates to: ATFCCAHTEGWRRARTQAVQTLS*SGFSEL Trigger: CAGCTCAGAGAACCCTGAGCAGCTCAGTGTCTGCAC...TGCCTGAGTCCTTGCGCGTCTCCAGCCTTCTGTGTGAGCACAGCAGAAGGTGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR-3UTR GCA 90 bp | CTCGCTGCCACCTTCTGCTGTGCTCACACAGAAGGCTGGAGACGCGCAAGGACTGCACAAGCCGACCTTTaGTTCTGTTTTCTAAGGTAT | + |
|
Preference number: 2 (lower is better) Translates to: LAATFCCAHTEGWRRARTAQADL*FCFLRY Trigger: ATACCTTAGAAAACAGAAGCAAAGGTCGGCTTGTGC...AGTCCTTGCGCGTCTCCAGCCTTCTGTGTGAGCACAGCAGAAGGTGGCAGCGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR-3UTR TCA 90 bp | AAGGTGCAGACACTGAGCTGCTCAGGGTTCTCTGAGCTGTGCTTTCCGACTCTGCAAATGTGTCTTCACTaGCCATTATTCTCACACACA | + |
|
Preference number: 2 (lower is better) Translates to: KVQTLSCSGFSELCFPTLQMCLH*PLFSHT Trigger: TGTGTGTGAGAATAATGGTCAGTGAAGACACATTTG...CAGAGTCGGAAAGCACAGCTCAGAGAACCCTGAGCAGCTCAGTGTCTGCACCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR TCA 72 bp | GCTGCTCAGGGTTCTCTGAGCTGTGCTTTCCGACTCTaGCTACTGTCCCCTCAGGGCGCACCCCAGCTGGCC | + |
|
Preference number: 3 (lower is better) Translates to: AAQGSLSCAFRL*LLSPQGAPQLA Trigger: GGCCAGCTGGGGTGCGCCCTGAGGGGACAGTAGTCAGAGTCGGAAAGCACAGCTCAGAGAACCCTGAGCAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR GCA 72 bp | GGATCTGCAATGTGTGTCACGCTCGCTGCCACCTTCTaGTGTGCTCACACAGAAGGCTGGAGACGCGCAAGG | + |
|
Preference number: 3 (lower is better) Translates to: GSAMCVTLAATF*CAHTEGWRRAR Trigger: CCTTGCGCGTCTCCAGCCTTCTGTGTGAGCACAGCAGAAGGTGGCAGCGAGCGTGACACACATTGCAGATCC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR GCA 72 bp | GCAAGGACTCAGGCAGGAAAGGTGCAGACACTGAGCTaGTCAGGGTTCTCTGAGCTGTGCTTTCCGACTCTG | + |
|
Preference number: 3 (lower is better) Translates to: ARTQAGKVQTLS*SGFSELCFPTL Trigger: CAGAGTCGGAAAGCACAGCTCAGAGAACCCTGAGCAGCTCAGTGTCTGCACCTTTCCTGCCTGAGTCCTTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR GCA 72 bp | ACGTTCCCAAGGATCTGCAATGTGTGTCACGCTCGCTaGCACCTTCTGCTGTGCTCACACAGAAGGCTGGAG | + |
|
Preference number: 3 (lower is better) Translates to: TFPRICNVCHAR*HLLLCSHRRLE Trigger: CTCCAGCCTTCTGTGTGAGCACAGCAGAAGGTGGCAGCGAGCGTGACACACATTGCAGATCCTTGGGAACGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR-3UTR CAA 90 bp | CGCTGCCACCTTCTGCTGTGCTCACACAGAAGGCTGGAGACGCGCAAGGACTCAAGCACAAGCCGACCTTaGCTTCTGTTTTCTAAGGTA | + |
|
Preference number: 3 (lower is better) Translates to: RCHLLLCSHRRLETRKDSSTSRP*LLFSKV Trigger: TACCTTAGAAAACAGAAGCAAAGGTCGGCTTGTGCT...TGAGTCCTTGCGCGTCTCCAGCCTTCTGTGTGAGCACAGCAGAAGGTGGCAGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR TCA 72 bp | GCGCACCCCAGCTGGCCACAGGTAACACTCCGTTGCTaGCTAACAGATGCAATGAATAAACAAATGTGTCTT | + |
|
Preference number: 3 (lower is better) Translates to: AHPSWPQVTLRC*LTDAMNKQMCL Trigger: AAGACACATTTGTTTATTCATTGCATCTGTTAGTCAGCAACGGAGTGTTACCTGTGGCCAGCTGGGGTGCGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| CDS-3UTR GCA 90 bp | GTGCTTTCCGACTCTGACTACTGTCCCCTCAGGGCGCACCCCAGCTGGCCACAGCTCAAGCGCTCGACCTaGGCCCTTCTGGTCTCCGGA | + |
|
Preference number: 4 (lower is better) Translates to: VLSDSDYCPLRAHPSWPQLKRST*ALLVSG Trigger: TCCGGAGACCAGAAGGGCGCAGGTCGAGCGCTTGAG...CTGTGGCCAGCTGGGGTGCGCCCTGAGGGGACAGTAGTCAGAGTCGGAAAGCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| CDS-3UTR CCA 90 bp | CCACCTTCTGCTGTGCTCACACAGAAGGCTGGAGACGCGCAAGGACTCAGGCAGCAGGGTCGAGGGTACTaGGGAGAGTGGCCAGGGGCG | + |
|
Preference number: 4 (lower is better) Translates to: PPSAVLTQKAGDAQGLRQQGRGY*GEWPGA Trigger: CGCCCCTGGCCACTCTCCCCAGTACCCTCGACCCTG...CTGCCTGAGTCCTTGCGCGTCTCCAGCCTTCTGTGTGAGCACAGCAGAAGGTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| CDS-3UTR CCA 90 bp | CGCCTCAGCAGCAGCTCACGTTCCCAAGGATCTGCAATGTGTGTCACGCTCGCTGGGTACTGGGGAGAGTaGCCAGGGGCGCAGGCTTAT | + |
|
Preference number: 4 (lower is better) Translates to: RLSSSSRSQGSAMCVTLAGYWGE*PGAQAY Trigger: ATAAGCCTGCGCCCCTGGCCACTCTCCCCAGTACCC...AGCGAGCGTGACACACATTGCAGATCCTTGGGAACGTGAGCTGCTGCTGAGGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| CDS-3UTR TCA 90 bp | CGCCTCAGCAGCAGCTCACGTTCCCAAGGATCTGCAATGTGTGTCACGCTCGCTCATAATACCAGAAGATaGGGGGCCCAAACCCTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: RLSSSSRSQGSAMCVTLAHNTRR*GAQTLP Trigger: TGGCAGGGTTTGGGCCCCTCATCTTCTGGTATTATG...AGCGAGCGTGACACACATTGCAGATCCTTGGGAACGTGAGCTGCTGCTGAGGCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| CDS-3UTR CCA 90 bp | TCAGCAGCAGCTCACGTTCCCAAGGATCTGCAATGTGTGTCACGCTCGCTGCCATGTGCGACACGCGTTTaGGGTCGTTGTACTGAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: SAAAHVPKDLQCVSRSLPCATRV*GRCTEA Trigger: TGCTTCAGTACAACGACCCCAAACGCGTGTCGCACA...TGGCAGCGAGCGTGACACACATTGCAGATCCTTGGGAACGTGAGCTGCTGCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| 3UTR CAA 72 bp | TATTCTCACACACAGGTTCCCAGCACAAGCCGACCTTaGCTTCTGTTTTCTAAGGTATTAACATGCTTCGGC | + |
|
Preference number: 4 (lower is better) Translates to: YSHTQVPSTSRP*LLFSKVLTCFG Trigger: GCCGAAGCATGTTAATACCTTAGAAAACAGAAGCAAAGGTCGGCTTGTGCTGGGAACCTGTGTGTGAGAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| CDS-3UTR CAA 90 bp | ACCTTCTGCTGTGCTCACACAGAAGGCTGGAGACGCGCAAGGACTCAGGCAGGACCTAAAAGTGAGTTCTaGGGAGTGGGCCTGAAATTA | + |
|
Preference number: 5 (lower is better) Translates to: TFCCAHTEGWRRARTQAGPKSEF*GVGLKL Trigger: TAATTTCAGGCCCACTCCCAAGAACTCACTTTTAGG...TCCTGCCTGAGTCCTTGCGCGTCTCCAGCCTTCTGTGTGAGCACAGCAGAAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||
| CDS TCA 72 bp | TCCTCGATGTGCGACACGCGTTTGGGGTCGTTGTACTaGAGCAGATACTCCCGTTTAAGCCGGGCCCTTATG | + |
|
Preference number: 6 (lower is better) Translates to: SSMCDTRLGSLY*SRYSRLSRALM Trigger: CATAAGGGCCCGGCTTAAACGGGAGTATCTGCTTCAGTACAACGACCCCAAACGCGTGTCGCACATCGAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023514.4 |
||