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Pregenerated sensors for NDUFB11B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061633

Ensembl transcript IDs: ENSMUST00000074608.4

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGGTTACATATGAAGTTTAGTAATGGAGGCTCCCAAGCAGCCCCATaGCAGAAGCAGAAGAGGGGGATACAAATAAAGCAAGAGAGCCCA +
Preference number: 1 (lower is better)
Translates to: GLHMKFSNGGSQAAP*QKQKRGIQIKQESP
Trigger: TGGGCTCTCTTGCTTTATTTGTATCCCCCTCTTCTGCTTCTGCCATGGGGCTGCTTGGGAGCCTCCATTACTAAACTTCATATGTAACCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074608.4
3UTR CCA 72 bp ATACAAATAAAGCAAGAGAGCCCAGTACATCAATGGTaGGGGGAGGGAGCCCAGACATTGGCAAGTATTCAA +
Preference number: 3 (lower is better)
Translates to: IQIKQESPVHQW*GEGAQTLASIQ
Trigger: TTGAATACTTGCCAATGTCTGGGCTCCCTCCCCCCACCATTGATGTACTGGGCTCTCTTGCTTTATTTGTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074608.4
CDS-3UTR GCA 90 bp GCAGAAGAGGGGGATACAAATAAAGCAAGAGAGCCCAGTACATCAATGGTGGGGACGGTCGGTTCTTCCTaGTCCTTTCGGGCCGCAGCG +
Preference number: 4 (lower is better)
Translates to: AEEGDTNKAREPSTSMVGTVGSS*SFRAAA
Trigger: CGCTGCGGCCCGAAAGGAGCAGGAAGAACCGACCGT...CCCCACCATTGATGTACTGGGCTCTCTTGCTTTATTTGTATCCCCCTCTTCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074608.4
CDS-3UTR CCA 90 bp GCGTTTTGGAACTTAGAACTCCAGGAAGTAAGCAGACCACAAGGTGAAGGCCCCCAGCCCTGGAGGAGCTaGATTTCCAGCAAAGTGGGG +
Preference number: 4 (lower is better)
Translates to: AFWNLELQEVSRPQGEGPQPWRS*ISSKVG
Trigger: CCCCACTTTGCTGGAAATCCAGCTCCTCCAGGGCTG...GGGGCCTTCACCTTGTGGTCTGCTTACTTCCTGGAGTTCTAAGTTCCAAAACGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074608.4
CDS-3UTR TCA 90 bp AAGCAGAAGAGGGGGATACAAATAAAGCAAGAGAGCCCAGTACATCAATGGTGGAATAGTTGGACTCCATaGTGGGGAGGCCACTGGCCT +
Preference number: 4 (lower is better)
Translates to: KQKRGIQIKQESPVHQWWNSWTP*WGGHWP
Trigger: AGGCCAGTGGCCTCCCCATCATGGAGTCCAACTATT...CCACCATTGATGTACTGGGCTCTCTTGCTTTATTTGTATCCCCCTCTTCTGCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074608.4
CDS-3UTR CCA 90 bp GGAGATAATTGTTCCTCCCATCTCTTTAGCATATTTAGGTCAATCAGTGTTACTTTCGTCCTCGGGATCTaGGTCCTCCATCCACTGCAC +
Preference number: 4 (lower is better)
Translates to: GDNCSSHLFSIFRSISVTFVLGI*VLHPLH
Trigger: GTGCAGTGGATGGAGGACCCAGATCCCGAGGACGAA...AGTAACACTGATTGACCTAAATATGCTAAAGAGATGGGAGGAACAATTATCTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074608.4
CDS CCA 90 bp ATGGAAGTGTGGGTTCTTCAAGTACACGTTTTCGTCCTCGGGATCTaGGTCCTCCATCCACTGCACGGTCGGTTCTTCCTGCTCCTTTCG +
Preference number: 5 (lower is better)
Translates to: MEVWVLQVHVFVLGI*VLHPLHGRFFLLLS
Trigger: CGAAAGGAGCAGGAAGAACCGACCGTGCAGTGGATGGAGGACCCAGATCCCGAGGACGAAAACGTGTACTTGAAGAACCCACACTTCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074608.4
CDS-3UTR CAA 90 bp AAAAGAAACAGATGCGTTTTGGAACTTAGAACTCCAGGAAGTAAGCAGACCACATCGTCCTCCAGCAGGTaGATCTTGGTGGGGTCAAAA +
Preference number: 5 (lower is better)
Translates to: KRNRCVLELRTPGSKQTTSSSSR*ILVGSK
Trigger: TTTTGACCCCACCAAGATCAACCTGCTGGAGGACGA...TGTGGTCTGCTTACTTCCTGGAGTTCTAAGTTCCAAAACGCATCTGTTTCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000074608.4
CDS CCA 72 bp CTGGAGGAGCTGGATTTCCAGCAAAGTGGGGCAGCCTaGAGCCGTCGAATTGCGGAAAGGCTGCGAGCGCAC +
Preference number: 6 (lower is better)
Translates to: LEELDFQQSGAA*SRRIAERLRAH
Trigger: GTGCGCTCGCAGCCTTTCCGCAATTCGACGGCTCCAGGCTGCCCCACTTTGCTGGAAATCCAGCTCCTCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074608.4
CDS CCA 72 bp TGGGTTCTTCAAGTACACGTTTTCGTCCTCGGGATCTaGGTCCTCCATCCACTGCACGGTCGGTTCTTCCTG +
Preference number: 6 (lower is better)
Translates to: WVLQVHVFVLGI*VLHPLHGRFFL
Trigger: CAGGAAGAACCGACCGTGCAGTGGATGGAGGACCCAGATCCCGAGGACGAAAACGTGTACTTGAAGAACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074608.4
CDS GCA 72 bp ACCAGGGCGATGGAAAAACCAAAGAAGAAGACGGCGTaGATATTCAAGGCATCCACCTTCGGGTCGTCGTCG +
Preference number: 6 (lower is better)
Translates to: TRAMEKPKKKTA*IFKASTFGSSS
Trigger: CGACGACGACCCGAAGGTGGATGCCTTGAATATGCACGCCGTCTTCTTCTTTGGTTTTTCCATCGCCCTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000074608.4