Pregenerated sensors for NDUFAF8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078572Ensembl transcript IDs: ENSMUST00000106223.4, ENSMUST00000185558.2
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCATGGTTCAGGGTGGGAGGAACCATTACACAGCAGGAACTCTGCTaGCCATATGCGTGCTGTCAGGACAGGGCCTCCACGCCCACCGCT | + |
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Preference number: 1 (lower is better) Translates to: PWFRVGGTITQQELC*PYACCQDRASTPTA Trigger: AGCGGTGGGCGTGGAGGCCCTGTCCTGACAGCACGCATATGGGCAGCAGAGTTCCTGCTGTGTAATGGTTCCTCCCACCCTGAACCATGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| 3UTR GCA 90 bp | TGCCCATGGTTCAGGGTGGGAGGAACCATTACACAGCAGGAACTCTaGTGCCCATATGCGTGCTGTCAGGACAGGGCCTCCACGCCCACC | + |
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Preference number: 1 (lower is better) Translates to: CPWFRVGGTITQQEL*CPYACCQDRASTPT Trigger: GGTGGGCGTGGAGGCCCTGTCCTGACAGCACGCATATGGGCAGCAGAGTTCCTGCTGTGTAATGGTTCCTCCCACCCTGAACCATGGGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| 3UTR CCA 90 bp | ACACTGCCGGGAAACAGCCCTGCCCTGCCTGCCCATGGTTCAGGGTaGGAGGAACCATTACACAGCAGGAACTCTGCTGCCCATATGCGT | + |
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Preference number: 1 (lower is better) Translates to: TLPGNSPALPAHGSG*EEPLHSRNSAAHMR Trigger: ACGCATATGGGCAGCAGAGTTCCTGCTGTGTAATGGTTCCTCCCACCCTGAACCATGGGCAGGCAGGGCAGGGCTGTTTCCCGGCAGTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106223.4 ENSMUST00000185558.2 |
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| 3UTR GCA 90 bp | CCAGATCCTCATGTACACACTGCCGGGAAACAGCCCTGCCCTGCCTaGCCATGGTTCAGGGTGGGAGGAACCATTACACAGCAGGAACTC | + |
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Preference number: 1 (lower is better) Translates to: PDPHVHTAGKQPCPA*PWFRVGGTITQQEL Trigger: GAGTTCCTGCTGTGTAATGGTTCCTCCCACCCTGAACCATGGGCAGGCAGGGCAGGGCTGTTTCCCGGCAGTGTGTACATGAGGATCTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106223.4 ENSMUST00000185558.2 |
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| 3UTR TCA 90 bp | GGTCCAGACCTGCCACCTTTGTGGGGTGGGGGTGCAGGTGTCCTCTaGATACATTGTCCTTGGGAGAGACCAGTTCCTTATACCATGCTT | + |
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Preference number: 1 (lower is better) Translates to: GPDLPPLWGGGAGVL*IHCPWERPVPYTML Trigger: AAGCATGGTATAAGGAACTGGTCTCTCCCAAGGACAATGTATTCAGAGGACACCTGCACCCCCACCCCACAAAGGTGGCAGGTCTGGACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| 3UTR-3UTR GCA 90 bp | GCTGAGAGCAGAGTTCTATGGTCCAGACCTGCCACCTTTGTGGGGTGGGGGTGCCAGCAGGAACTCTGCTaGCCATATGCGTGCTGTCAG | + |
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Preference number: 2 (lower is better) Translates to: AESRVLWSRPATFVGWGCQQELC*PYACCQ Trigger: CTGACAGCACGCATATGGGCAGCAGAGTTCCTGCTG...GCACCCCCACCCCACAAAGGTGGCAGGTCTGGACCATAGAACTCTGCTCTCAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| 3UTR-3UTR CCA 90 bp | CATCTCAACCAAATCCAGATCCTCATGTACACACTGCCGGGAAACAGCCCTGCCGCCCATGGTTCAGGGTaGGAGGAACCATTACACAGC | + |
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Preference number: 2 (lower is better) Translates to: HLNQIQILMYTLPGNSPAAHGSG*EEPLHS Trigger: GCTGTGTAATGGTTCCTCCCACCCTGAACCATGGGC...GGCAGGGCTGTTTCCCGGCAGTGTGTACATGAGGATCTGGATTTGGTTGAGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106223.4 ENSMUST00000185558.2 |
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| 3UTR CAA 90 bp | CCTGCCACCTTTGTGGGGTGGGGGTGCAGGTGTCCTCTGAATACATaGTCCTTGGGAGAGACCAGTTCCTTATACCATGCTTTATATATA | + |
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Preference number: 2 (lower is better) Translates to: PATFVGWGCRCPLNT*SLGETSSLYHALYI Trigger: TATATATAAAGCATGGTATAAGGAACTGGTCTCTCCCAAGGACAATGTATTCAGAGGACACCTGCACCCCCACCCCACAAAGGTGGCAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| 3UTR GCA 72 bp | CCAGATCCTCATGTACACACTGCCGGGAAACAGCCCTaGCCTGCCTGCCCATGGTTCAGGGTGGGAGGAACC | + |
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Preference number: 3 (lower is better) Translates to: PDPHVHTAGKQP*PACPWFRVGGT Trigger: GGTTCCTCCCACCCTGAACCATGGGCAGGCAGGGCAGGGCTGTTTCCCGGCAGTGTGTACATGAGGATCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106223.4 ENSMUST00000185558.2 |
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| 3UTR GCA 72 bp | AGGAACCATTACACAGCAGGAACTCTGCTGCCCATATaGGTGCTGTCAGGACAGGGCCTCCACGCCCACCGC | + |
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Preference number: 3 (lower is better) Translates to: RNHYTAGTLLPI*VLSGQGLHAHR Trigger: GCGGTGGGCGTGGAGGCCCTGTCCTGACAGCACGCATATGGGCAGCAGAGTTCCTGCTGTGTAATGGTTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| 3UTR GCA 72 bp | AGGGTGGGAGGAACCATTACACAGCAGGAACTCTGCTaGCCATATGCGTGCTGTCAGGACAGGGCCTCCACG | + |
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Preference number: 3 (lower is better) Translates to: RVGGTITQQELC*PYACCQDRAST Trigger: CGTGGAGGCCCTGTCCTGACAGCACGCATATGGGCAGCAGAGTTCCTGCTGTGTAATGGTTCCTCCCACCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| 3UTR GCA 72 bp | TTCAGGGTGGGAGGAACCATTACACAGCAGGAACTCTaGTGCCCATATGCGTGCTGTCAGGACAGGGCCTCC | + |
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Preference number: 3 (lower is better) Translates to: FRVGGTITQQEL*CPYACCQDRAS Trigger: GGAGGCCCTGTCCTGACAGCACGCATATGGGCAGCAGAGTTCCTGCTGTGTAATGGTTCCTCCCACCCTGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| 3UTR GCA 72 bp | CTATGGTCCAGACCTGCCACCTTTGTGGGGTGGGGGTaGAGGTGTCCTCTGAATACATTGTCCTTGGGAGAG | + |
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Preference number: 3 (lower is better) Translates to: LWSRPATFVGWG*RCPLNTLSLGE Trigger: CTCTCCCAAGGACAATGTATTCAGAGGACACCTGCACCCCCACCCCACAAAGGTGGCAGGTCTGGACCATAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| 3UTR GCA 72 bp | TACATCTCAACCAAATCCAGATCCTCATGTACACACTaGCGGGAAACAGCCCTGCCCTGCCTGCCCATGGTT | + |
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Preference number: 3 (lower is better) Translates to: YISTKSRSSCTH*RETALPCLPMV Trigger: AACCATGGGCAGGCAGGGCAGGGCTGTTTCCCGGCAGTGTGTACATGAGGATCTGGATTTGGTTGAGATGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106223.4 ENSMUST00000185558.2 |
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| 3UTR CCA 72 bp | AGAGTTCTATGGTCCAGACCTGCCACCTTTGTGGGGTaGGGGTGCAGGTGTCCTCTGAATACATTGTCCTTG | + |
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Preference number: 3 (lower is better) Translates to: RVLWSRPATFVG*GCRCPLNTLSL Trigger: CAAGGACAATGTATTCAGAGGACACCTGCACCCCCACCCCACAAAGGTGGCAGGTCTGGACCATAGAACTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| CDS-3UTR CCA 90 bp | CCTCATGTACACACTGCCGGGAAACAGCCCTGCCCTGCCTGCCCATGGTTCAGGACTCAGGCGGCCTCCTaGGGCGGTGGACGCCTGCAC | + |
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Preference number: 4 (lower is better) Translates to: PHVHTAGKQPCPACPWFRTQAAS*GGGRLH Trigger: GTGCAGGCGTCCACCGCCCCAGGAGGCCGCCTGAGT...CCTGAACCATGGGCAGGCAGGGCAGGGCTGTTTCCCGGCAGTGTGTACATGAGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106223.4 ENSMUST00000185558.2 |
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| CDS-3UTR CCA 90 bp | ATCCAGATCCTCATGTACACACTGCCGGGAAACAGCCCTGCCCTGCCTGCCCATGGCCTCCTGGGGCGGTaGACGCCTGCACGCACTTGC | + |
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Preference number: 4 (lower is better) Translates to: IQILMYTLPGNSPALPAHGLLGR*TPARTC Trigger: GCAAGTGCGTGCAGGCGTCCACCGCCCCAGGAGGCC...ATGGGCAGGCAGGGCAGGGCTGTTTCCCGGCAGTGTGTACATGAGGATCTGGAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106223.4 ENSMUST00000185558.2 |
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| CDS-3UTR CCA 90 bp | CCTGCCTGCCCATGGTTCAGGGTGGGAGGAACCATTACACAGCAGGAACTCTGCACTCAGGCGGCCTCCTaGGGCGGTGGACGCCTGCAC | + |
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Preference number: 4 (lower is better) Translates to: PACPWFRVGGTITQQELCTQAAS*GGGRLH Trigger: GTGCAGGCGTCCACCGCCCCAGGAGGCCGCCTGAGT...GCAGAGTTCCTGCTGTGTAATGGTTCCTCCCACCCTGAACCATGGGCAGGCAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106223.4 ENSMUST00000185558.2 |
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| CDS-3UTR GCA 90 bp | TCCTCATGTACACACTGCCGGGAAACAGCCCTGCCCTGCCTGCCCATGGTTCAGCCACAGGCCGCCAGATaGTCGGGGAAGGCTCGGAAA | + |
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Preference number: 4 (lower is better) Translates to: SSCTHCRETALPCLPMVQPQAAR*SGKARK Trigger: TTTCCGAGCCTTCCCCGAGCATCTGGCGGCCTGTGG...CTGAACCATGGGCAGGCAGGGCAGGGCTGTTTCCCGGCAGTGTGTACATGAGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106223.4 ENSMUST00000185558.2 |
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| CDS-3UTR CCA 90 bp | TTCAGGGTGGGAGGAACCATTACACAGCAGGAACTCTGCTGCCCATATGCGTGCGGCCTCCTGGGGCGGTaGACGCCTGCACGCACTTGC | + |
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Preference number: 4 (lower is better) Translates to: FRVGGTITQQELCCPYACGLLGR*TPARTC Trigger: GCAAGTGCGTGCAGGCGTCCACCGCCCCAGGAGGCC...GCACGCATATGGGCAGCAGAGTTCCTGCTGTGTAATGGTTCCTCCCACCCTGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106223.4 ENSMUST00000185558.2 |
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| CDS-3UTR CCA 90 bp | CCTGCCCTGCCTGCCCATGGTTCAGGGTGGGAGGAACCATTACACAGCAGGAACAGGAGCCTCCCATCATaGTCTTCTTGGCCGCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: PALPAHGSGWEEPLHSRNRSLPS*SSWPRR Trigger: CCGCCGCGGCCAAGAAGACCATGATGGGAGGCTCCT...GTTCCTGCTGTGTAATGGTTCCTCCCACCCTGAACCATGGGCAGGCAGGGCAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| CDS-3UTR GCA 90 bp | CCTGCCTGCCCATGGTTCAGGGTGGGAGGAACCATTACACAGCAGGAACTCTGCCCACAGGCCGCCAGATaGTCGGGGAAGGCTCGGAAA | + |
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Preference number: 4 (lower is better) Translates to: PACPWFRVGGTITQQELCPQAAR*SGKARK Trigger: TTTCCGAGCCTTCCCCGAGCATCTGGCGGCCTGTGG...GCAGAGTTCCTGCTGTGTAATGGTTCCTCCCACCCTGAACCATGGGCAGGCAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106223.4 ENSMUST00000185558.2 |
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| 3UTR CAA 72 bp | TTTGTGGGGTGGGGGTGCAGGTGTCCTCTGAATACATaGTCCTTGGGAGAGACCAGTTCCTTATACCATGCT | + |
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Preference number: 4 (lower is better) Translates to: FVGWGCRCPLNT*SLGETSSLYHA Trigger: AGCATGGTATAAGGAACTGGTCTCTCCCAAGGACAATGTATTCAGAGGACACCTGCACCCCCACCCCACAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| 3UTR CAA 72 bp | GGGTGGGGGTGCAGGTGTCCTCTGAATACATTGTCCTaGGGAGAGACCAGTTCCTTATACCATGCTTTATAT | + |
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Preference number: 4 (lower is better) Translates to: GWGCRCPLNTLS*GETSSLYHALY Trigger: ATATAAAGCATGGTATAAGGAACTGGTCTCTCCCAAGGACAATGTATTCAGAGGACACCTGCACCCCCACCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| CDS-3UTR CCA 90 bp | TACATTGTCCTTGGGAGAGACCAGTTCCTTATACCATGCTTTATATATAAAAGTCCATCATGGTCTTCTTaGCCGCGGCGGCGAAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: YIVLGRDQFLIPCFIYKSPSWSS*PRRRSS Trigger: GCTGCTTCGCCGCCGCGGCCAAGAAGACCATGATGG...ACTTTTATATATAAAGCATGGTATAAGGAACTGGTCTCTCCCAAGGACAATGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| 3UTR CAA 72 bp | TGGTTTATTTTGTTGTTGTTTGTTGTTTTGTTTGTTTaGAGATGGTTGACTCTGTGTAACAAGCCCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: WFILLLFVVLFV*RWLTLCNKPWL Trigger: CAGCCAGGGCTTGTTACACAGAGTCAACCATCTCAAAACAAACAAAACAACAAACAACAACAAAATAAACCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| CDS GCA 90 bp | CCTTACTCAGGCGGCCTCCTGGGGCGGTGGACGCCTGCACGCACTTaGCATAAGCCGAGGCCTCAGCTCCACAGGCCGCCAGATGCTCGG | + |
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Preference number: 5 (lower is better) Translates to: PYSGGLLGRWTPART*HKPRPQLHRPPDAR Trigger: CCGAGCATCTGGCGGCCTGTGGAGCTGAGGCCTCGGCTTATGGCAAGTGCGTGCAGGCGTCCACCGCCCCAGGAGGCCGCCTGAGTAAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106223.4 ENSMUST00000185558.2 |
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| CDS CCA 90 bp | ACTCGCGAACGCAGAGGTCCTTACTCAGGCGGCCTCCTGGGGCGGTaGACGCCTGCACGCACTTGCCATAAGCCGAGGCCTCAGCTCCAC | + |
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Preference number: 5 (lower is better) Translates to: TRERRGPYSGGLLGR*TPARTCHKPRPQLH Trigger: GTGGAGCTGAGGCCTCGGCTTATGGCAAGTGCGTGCAGGCGTCCACCGCCCCAGGAGGCCGCCTGAGTAAGGACCTCTGCGTTCGCGAGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106223.4 ENSMUST00000185558.2 |
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| CDS-3UTR CAA 90 bp | GTTACATCTCAACCAAATCCAGATCCTCATGTACACACTGCCGGGAAACAGCCCCCCATCATGGTCTTCTaGGCCGCGGCGGCGAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: VTSQPNPDPHVHTAGKQPPIMVF*AAAAKQ Trigger: CTGCTTCGCCGCCGCGGCCAAGAAGACCATGATGGG...GGGCTGTTTCCCGGCAGTGTGTACATGAGGATCTGGATTTGGTTGAGATGTAAC 57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000106223.4 |
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| CDS GCA 72 bp | GGCGGCCTCCTGGGGCGGTGGACGCCTGCACGCACTTaGCATAAGCCGAGGCCTCAGCTCCACAGGCCGCCA | + |
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Preference number: 6 (lower is better) Translates to: GGLLGRWTPART*HKPRPQLHRPP Trigger: TGGCGGCCTGTGGAGCTGAGGCCTCGGCTTATGGCAAGTGCGTGCAGGCGTCCACCGCCCCAGGAGGCCGCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106223.4 ENSMUST00000185558.2 |
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| CDS CCA 72 bp | CTCGCGAACGCAGAGGTCCTTACTCAGGCGGCCTCCTaGGGCGGTGGACGCCTGCACGCACTTGCCATAAGC | + |
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Preference number: 6 (lower is better) Translates to: LANAEVLTQAAS*GGGRLHALAIS Trigger: GCTTATGGCAAGTGCGTGCAGGCGTCCACCGCCCCAGGAGGCCGCCTGAGTAAGGACCTCTGCGTTCGCGAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000106223.4 ENSMUST00000185558.2 |
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| CDS CCA 72 bp | TCCACGCCCACCGCTCTTCCTAGGAGCCTCCCATCATaGTCTTCTTGGCCTACCGCGGCGGCGAAGCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: STPTALPRSLPS*SSWPTAAAKQL Trigger: GAGCTGCTTCGCCGCCGCGGTAGGCCAAGAAGACCATGATGGGAGGCTCCTAGGAAGAGCGGTGGGCGTGGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185558.2 |
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