RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NDUFAF4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028261

Ensembl transcript IDs: ENSMUST00000029925.10, ENSMUST00000151249.2

Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AAGCTGACAAACTCTCCAGTCACCTCCCATCTTTGCTGTTCCATCTaGCTCCCTCCATCATCGCTGGATTCTTCTCATCTTCCACATCTT +
Preference number: 1 (lower is better)
Translates to: KLTNSPVTSHLCCSI*LPPSSLDSSHLPHL
Trigger: AAGATGTGGAAGATGAGAAGAATCCAGCGATGATGGAGGGAGGCAGATGGAACAGCAAAGATGGGAGGTGACTGGAGAGTTTGTCAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR GCA 90 bp CTAGATATGAAGAAGCTGACAAACTCTCCAGTCACCTCCCATCTTTaGTGTTCCATCTGCCTCCCTCCATCATCGCTGGATTCTTCTCAT +
Preference number: 1 (lower is better)
Translates to: LDMKKLTNSPVTSHL*CSICLPPSSLDSSH
Trigger: ATGAGAAGAATCCAGCGATGATGGAGGGAGGCAGATGGAACAGCAAAGATGGGAGGTGACTGGAGAGTTTGTCAGCTTCTTCATATCTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR TCA 90 bp TCTATTAGCCCAGAGCTCTACAAAGGACTTACAGAAGCAGACATTTaGGAAGTTTTGGCCCTTTGTGCTCAGGTAACCCGTGTATCAATT +
Preference number: 1 (lower is better)
Translates to: SISPELYKGLTEADI*EVLALCAQVTRVSI
Trigger: AATTGATACACGGGTTACCTGAGCACAAAGGGCCAAAACTTCTCAAATGTCTGCTTCTGTAAGTCCTTTGTAGAGCTCTGGGCTAATAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR GCA 90 bp TATCTCTTTAGAGTAGAACTTTACCCAAACCACCCACTCTTCTGCTaGAGGCTTCTTCATGAACAGCTCTCTCAGCTCTCATTTTTACAA +
Preference number: 1 (lower is better)
Translates to: YLFRVELYPNHPLFC*RLLHEQLSQLSFLQ
Trigger: TTGTAAAAATGAGAGCTGAGAGAGCTGTTCATGAAGAAGCCTGCAGCAGAAGAGTGGGTGGTTTGGGTAAAGTTCTACTCTAAAGAGATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR GCA 90 bp CTGTCCCTAACACAATGCCAGTCTTATAGGAGTCAGGAGGACTCTTaGTTTCAGTGTCTACTACAAAGAACAAACCAACTTAAACTAGAA +
Preference number: 1 (lower is better)
Translates to: LSLTQCQSYRSQEDS*FQCLLQRTNQLKLE
Trigger: TTCTAGTTTAAGTTGGTTTGTTCTTTGTAGTAGACACTGAAAGCAAGAGTCCTCCTGACTCCTATAAGACTGGCATTGTGTTAGGGACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR TCA 90 bp GGTCAAACAATATGGGCAAGAACCCACAAGTATAACATGCCAGAATaGGCCAAACTCATCTCACCTTATCTGAGATTCTATTACTGGAAT +
Preference number: 1 (lower is better)
Translates to: GQTIWARTHKYNMPE*AKLISPYLRFYYWN
Trigger: ATTCCAGTAATAGAATCTCAGATAAGGTGAGATGAGTTTGGCTCATTCTGGCATGTTATACTTGTGGGTTCTTGCCCATATTGTTTGACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR TCA 90 bp CCAGTTAAGAAACCATATTTACATCTGCTAGCCACCCAGGAAACCTaGGTCAGTACTGCTGATTCACATATTCATTTTGAATTAATGGAG +
Preference number: 1 (lower is better)
Translates to: PVKKPYLHLLATQET*VSTADSHIHFELME
Trigger: CTCCATTAATTCAAAATGAATATGTGAATCAGCAGTACTGACTCAGGTTTCCTGGGTGGCTAGCAGATGTAAATATGGTTTCTTAACTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029925.10
ENSMUST00000151249.2
3UTR TCA 90 bp AAATATTCTATTTACTCTTCAGTATCCACTAATCTTTGTAGTTACTaGAGTTTCCCGGGCTGCAACTTTCCCAGGAAAGCATTCTTAACT +
Preference number: 1 (lower is better)
Translates to: KYSIYSSVSTNLCSY*SFPGCNFPRKAFLT
Trigger: AGTTAAGAATGCTTTCCTGGGAAAGTTGCAGCCCGGGAAACTTCAGTAACTACAAAGATTAGTGGATACTGAAGAGTAAATAGAATATTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR CAA 90 bp ACTAGATATGAAGAAGCTGACAAACTCTCCAGTCACCTCCCATCTTaGCTGTTCCATCTGCCTCCCTCCATCATCGCTGGATTCTTCTCA +
Preference number: 2 (lower is better)
Translates to: TRYEEADKLSSHLPS*LFHLPPSIIAGFFS
Trigger: TGAGAAGAATCCAGCGATGATGGAGGGAGGCAGATGGAACAGCAAAGATGGGAGGTGACTGGAGAGTTTGTCAGCTTCTTCATATCTAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR-3UTR GCA 90 bp TGCTGCAGGCTTCTTCATGAACAGCTCTCTCAGCTCTCATTTTTACAAAAGCCACTTTGCTGTTCCATCTaGCTCCCTCCATCATCGCTG +
Preference number: 2 (lower is better)
Translates to: CCRLLHEQLSQLSFLQKPLCCSI*LPPSSL
Trigger: CAGCGATGATGGAGGGAGGCAGATGGAACAGCAAAG...TGGCTTTTGTAAAAATGAGAGCTGAGAGAGCTGTTCATGAAGAAGCCTGCAGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR-3UTR GCA 90 bp GCCTATCTCTTTAGAGTAGAACTTTACCCAAACCACCCACTCTTCTGCTGCAGGCTGTCCCTAACACAATaGCAGTCTTATAGGAGTCAG +
Preference number: 2 (lower is better)
Translates to: AYLFRVELYPNHPLFCCRLSLTQ*QSYRSQ
Trigger: CTGACTCCTATAAGACTGGCATTGTGTTAGGGACAG...CCTGCAGCAGAAGAGTGGGTGGTTTGGGTAAAGTTCTACTCTAAAGAGATAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR-3UTR CCA 90 bp TGCTGCAGGCTTCTTCATGAACAGCTCTCTCAGCTCTCATTTTTACAAAAGCCAAGCTTTCAAACGTTATaGCCCTCAACTCACAGGAAC +
Preference number: 2 (lower is better)
Translates to: CCRLLHEQLSQLSFLQKPSFQTL*PSTHRN
Trigger: GTTCCTGTGAGTTGAGGGCCATAACGTTTGAAAGCT...TGGCTTTTGTAAAAATGAGAGCTGAGAGAGCTGTTCATGAAGAAGCCTGCAGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR-3UTR TCA 90 bp TGCTGCAGGCTTCTTCATGAACAGCTCTCTCAGCTCTCATTTTTACAAAAGCCATTATATGAACAATCCTaGGGAGGTCAAAGAGCTTTC +
Preference number: 2 (lower is better)
Translates to: CCRLLHEQLSQLSFLQKPLYEQS*GGQRAF
Trigger: GAAAGCTCTTTGACCTCCTCAGGATTGTTCATATAA...TGGCTTTTGTAAAAATGAGAGCTGAGAGAGCTGTTCATGAAGAAGCCTGCAGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR-3UTR GCA 90 bp AGTGGGCTAATGTGCAAAATGGAAGGATTTTATTGTGTGATACCAGTTAAGAAAGTCACCTCCCATCTTTaGTGTTCCATCTGCCTCCCT +
Preference number: 2 (lower is better)
Translates to: SGLMCKMEGFYCVIPVKKVTSHL*CSICLP
Trigger: AGGGAGGCAGATGGAACAGCAAAGATGGGAGGTGAC...TTTCTTAACTGGTATCACACAATAAAATCCTTCCATTTTGCACATTAGCCCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR-3UTR CCA 90 bp CAGCTAGTTAAGGAACCGACATCTAAACTCCGCTTTTCCAAATGTAAATTTCATTCCCTCCATCATCGCTaGATTCTTCTCATCTTCCAC +
Preference number: 2 (lower is better)
Translates to: QLVKEPTSKLRFSKCKFHSLHHR*ILLIFH
Trigger: GTGGAAGATGAGAAGAATCCAGCGATGATGGAGGGA...ATGAAATTTACATTTGGAAAAGCGGAGTTTAGATGTCGGTTCCTTAACTAGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR-3UTR GCA 90 bp CAGCTAGTTAAGGAACCGACATCTAAACTCCGCTTTTCCAAATGTAAATTTCATCCCACAAGTATAACATaGCAGAATGAGCCAAACTCA +
Preference number: 2 (lower is better)
Translates to: QLVKEPTSKLRFSKCKFHPTSIT*QNEPNS
Trigger: TGAGTTTGGCTCATTCTGGCATGTTATACTTGTGGG...ATGAAATTTACATTTGGAAAAGCGGAGTTTAGATGTCGGTTCCTTAACTAGCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR-3UTR GCA 90 bp CAACCCACTCCAAAAGTAAAAGGTAAAGCTAAGATGTTATATCAAATGGCTTTGAGTCAGGAGGACTCTTaGTTTCAGTGTCTACTACAA +
Preference number: 2 (lower is better)
Translates to: QPTPKVKGKAKMLYQMALSQEDS*FQCLLQ
Trigger: TTGTAGTAGACACTGAAAGCAAGAGTCCTCCTGACT...CAAAGCCATTTGATATAACATCTTAGCTTTACCTTTTACTTTTGGAGTGGGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR-3UTR CCA 90 bp CAACCCACTCCAAAAGTAAAAGGTAAAGCTAAGATGTTATATCAAATGGCTTTGCTGAGATTCTATTACTaGAATGTAACATTCCAGAGC +
Preference number: 2 (lower is better)
Translates to: QPTPKVKGKAKMLYQMALLRFYY*NVTFQS
Trigger: GCTCTGGAATGTTACATTCCAGTAATAGAATCTCAG...CAAAGCCATTTGATATAACATCTTAGCTTTACCTTTTACTTTTGGAGTGGGTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR GCA 72 bp AAGAAGCTGACAAACTCTCCAGTCACCTCCCATCTTTaGTGTTCCATCTGCCTCCCTCCATCATCGCTGGAT +
Preference number: 3 (lower is better)
Translates to: KKLTNSPVTSHL*CSICLPPSSLD
Trigger: ATCCAGCGATGATGGAGGGAGGCAGATGGAACAGCAAAGATGGGAGGTGACTGGAGAGTTTGTCAGCTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR GCA 72 bp AACTCTCCAGTCACCTCCCATCTTTGCTGTTCCATCTaGCTCCCTCCATCATCGCTGGATTCTTCTCATCTT +
Preference number: 3 (lower is better)
Translates to: NSPVTSHLCCSI*LPPSSLDSSHL
Trigger: AAGATGAGAAGAATCCAGCGATGATGGAGGGAGGCAGATGGAACAGCAAAGATGGGAGGTGACTGGAGAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR CCA 72 bp GAGGCAAGTATGTCTGTCTGTTCCCGTGAAAGAATATaGACGAGCCCAGTTACCCCAACTCCATTCTGTCCT +
Preference number: 3 (lower is better)
Translates to: EASMSVCSRERI*TSPVTPTPFCP
Trigger: AGGACAGAATGGAGTTGGGGTAACTGGGCTCGTCCATATTCTTTCACGGGAACAGACAGACATACTTGCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR TCA 72 bp CCCAAACCACCCACTCTTCTGCTGCAGGCTTCTTCATaGACAGCTCTCTCAGCTCTCATTTTTACAAAAGCC +
Preference number: 3 (lower is better)
Translates to: PKPPTLLLQASS*TALSALIFTKA
Trigger: GGCTTTTGTAAAAATGAGAGCTGAGAGAGCTGTTCATGAAGAAGCCTGCAGCAGAAGAGTGGGTGGTTTGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR GCA 72 bp AGAGTAGAACTTTACCCAAACCACCCACTCTTCTGCTaGAGGCTTCTTCATGAACAGCTCTCTCAGCTCTCA +
Preference number: 3 (lower is better)
Translates to: RVELYPNHPLFC*RLLHEQLSQLS
Trigger: TGAGAGCTGAGAGAGCTGTTCATGAAGAAGCCTGCAGCAGAAGAGTGGGTGGTTTGGGTAAAGTTCTACTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR CCA 72 bp TCGCTGGATTCTTCTCATCTTCCACATCTTTTCCCGTaGAATCTCGAGGCAAGTATGTCTGTCTGTTCCCGT +
Preference number: 3 (lower is better)
Translates to: SLDSSHLPHLFP*NLEASMSVCSR
Trigger: ACGGGAACAGACAGACATACTTGCCTCGAGATTCCACGGGAAAAGATGTGGAAGATGAGAAGAATCCAGCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR TCA 72 bp CCAGAGCTCTACAAAGGACTTACAGAAGCAGACATTTaGGAAGTTTTGGCCCTTTGTGCTCAGGTAACCCGT +
Preference number: 3 (lower is better)
Translates to: PELYKGLTEADI*EVLALCAQVTR
Trigger: ACGGGTTACCTGAGCACAAAGGGCCAAAACTTCTCAAATGTCTGCTTCTGTAAGTCCTTTGTAGAGCTCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR GCA 72 bp TTTAGAGTAGAACTTTACCCAAACCACCCACTCTTCTaGTGCAGGCTTCTTCATGAACAGCTCTCTCAGCTC +
Preference number: 3 (lower is better)
Translates to: FRVELYPNHPLF*CRLLHEQLSQL
Trigger: GAGCTGAGAGAGCTGTTCATGAAGAAGCCTGCAGCAGAAGAGTGGGTGGTTTGGGTAAAGTTCTACTCTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR GCA 72 bp CTGTGTTTCCCTGCTGATTATCTGTCCCTAACACAATaGCAGTCTTATAGGAGTCAGGAGGACTCTTGCTTT +
Preference number: 3 (lower is better)
Translates to: LCFPADYLSLTQ*QSYRSQEDSCF
Trigger: AAAGCAAGAGTCCTCCTGACTCCTATAAGACTGGCATTGTGTTAGGGACAGATAATCAGCAGGGAAACACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR-3UTR CAA 90 bp GCCTATCTCTTTAGAGTAGAACTTTACCCAAACCACCCACTCTTCTGCTGCAGGAAGTGGAATTTAATATaGACTCATTTGGGCCACATG +
Preference number: 3 (lower is better)
Translates to: AYLFRVELYPNHPLFCCRKWNLI*THLGHM
Trigger: CATGTGGCCCAAATGAGTCAATATTAAATTCCACTT...CCTGCAGCAGAAGAGTGGGTGGTTTGGGTAAAGTTCTACTCTAAAGAGATAGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR-3UTR CAA 90 bp CATATAAGTAGGGATAGTTTCTTCACTGGAACTAGATATGAAGAAGCTGACAAAAGTCACCTCCCATCTTaGCTGTTCCATCTGCCTCCC +
Preference number: 3 (lower is better)
Translates to: HISRDSFFTGTRYEEADKSHLPS*LFHLPP
Trigger: GGGAGGCAGATGGAACAGCAAAGATGGGAGGTGACT...TTTGTCAGCTTCTTCATATCTAGTTCCAGTGAAGAAACTATCCCTACTTATATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029925.10
ENSMUST00000151249.2
3UTR TCA 72 bp ATTTACTCTTCAGTATCCACTAATCTTTGTAGTTACTaGAGTTTCCCGGGCTGCAACTTTCCCAGGAAAGCA +
Preference number: 3 (lower is better)
Translates to: IYSSVSTNLCSY*SFPGCNFPRKA
Trigger: TGCTTTCCTGGGAAAGTTGCAGCCCGGGAAACTTCAGTAACTACAAAGATTAGTGGATACTGAAGAGTAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR GCA 72 bp ACACAATGCCAGTCTTATAGGAGTCAGGAGGACTCTTaGTTTCAGTGTCTACTACAAAGAACAAACCAACTT +
Preference number: 3 (lower is better)
Translates to: TQCQSYRSQEDS*FQCLLQRTNQL
Trigger: AAGTTGGTTTGTTCTTTGTAGTAGACACTGAAAGCAAGAGTCCTCCTGACTCCTATAAGACTGGCATTGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR GCA 72 bp TACAGAAGCAGACATTTGAGAAGTTTTGGCCCTTTGTaGTCAGGTAACCCGTGTATCAATTCACATAATTCT +
Preference number: 3 (lower is better)
Translates to: YRSRHLRSFGPL*SGNPCINSHNS
Trigger: AGAATTATGTGAATTGATACACGGGTTACCTGAGCACAAAGGGCCAAAACTTCTCAAATGTCTGCTTCTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR-3UTR CAA 90 bp GTTAAGGAACCGACATCTAAACTCCGCTTTTCCAAATGTAAATTTCATGCACCTTCTCTCTTTCTTCACTaGGGAAATATAGTCACTGTG +
Preference number: 3 (lower is better)
Translates to: VKEPTSKLRFSKCKFHAPSLFLH*GNIVTV
Trigger: CACAGTGACTATATTTCCCAAGTGAAGAAAGAGAGA...AGGTGCATGAAATTTACATTTGGAAAAGCGGAGTTTAGATGTCGGTTCCTTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR TCA 72 bp GATGGTTTTGACGGCACTTTCCACCATAATCAGCAATaGTTGGAATTAGTAGGTTCCCTTAAACTTCTGTAT +
Preference number: 3 (lower is better)
Translates to: DGFDGTFHHNQQ*LELVGSLKLLY
Trigger: ATACAGAAGTTTAAGGGAACCTACTAATTCCAATCATTGCTGATTATGGTGGAAAGTGCCGTCAAAACCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029925.10
ENSMUST00000151249.2
3UTR TCA 72 bp CCCAATACCAGTCACTGGTCAGTTTTAGAGCATCTTTaGTCTAGAATCCATTTATTCAGGGATTTTAATCTT +
Preference number: 3 (lower is better)
Translates to: PNTSHWSVLEHL*SRIHLFRDFNL
Trigger: AAGATTAAAATCCCTGAATAAATGGATTCTAGATCAAAGATGCTCTAAAACTGACCAGTGACTGGTATTGGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR CAA 72 bp GAAGAAGCTGACAAACTCTCCAGTCACCTCCCATCTTaGCTGTTCCATCTGCCTCCCTCCATCATCGCTGGA +
Preference number: 4 (lower is better)
Translates to: EEADKLSSHLPS*LFHLPPSIIAG
Trigger: TCCAGCGATGATGGAGGGAGGCAGATGGAACAGCAAAGATGGGAGGTGACTGGAGAGTTTGTCAGCTTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR CAA 72 bp CCCAGAGCTCTACAAAGGACTTACAGAAGCAGACATTaGAGAAGTTTTGGCCCTTTGTGCTCAGGTAACCCG +
Preference number: 4 (lower is better)
Translates to: PRALQRTYRSRH*RSFGPLCSGNP
Trigger: CGGGTTACCTGAGCACAAAGGGCCAAAACTTCTCAAATGTCTGCTTCTGTAAGTCCTTTGTAGAGCTCTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
CDS-3UTR CCA 90 bp CGTGAAAGAATATGGACGAGCCCAGTTACCCCAACTCCATTCTGTCCTTTTGAACAGGCACCGGATCTTTaGAATCGACATATACATCTC +
Preference number: 4 (lower is better)
Translates to: RERIWTSPVTPTPFCPFEQAPDL*NRHIHL
Trigger: GAGATGTATATGTCGATTCCAAAGATCCGGTGCCTG...TTCAAAAGGACAGAATGGAGTTGGGGTAACTGGGCTCGTCCATATTCTTTCACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
CDS-3UTR CCA 90 bp CTGGAACTAGATATGAAGAAGCTGACAAACTCTCCAGTCACCTCCCATCTTTGCCTTTGGTTCTTGTCGTaGTTCAACTTTTACCGGCAA +
Preference number: 4 (lower is better)
Translates to: LELDMKKLTNSPVTSHLCLWFLS*FNFYRQ
Trigger: TTGCCGGTAAAAGTTGAACCACGACAAGAACCAAAG...GCAAAGATGGGAGGTGACTGGAGAGTTTGTCAGCTTCTTCATATCTAGTTCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029925.10
ENSMUST00000151249.2
CDS-3UTR TCA 90 bp GCCTATCTCTTTAGAGTAGAACTTTACCCAAACCACCCACTCTTCTGCTGCAGGATATTCTTATCAAAGTaGTTTCCTATCGGCAGTCTG +
Preference number: 4 (lower is better)
Translates to: AYLFRVELYPNHPLFCCRIFLSK*FPIGSL
Trigger: CAGACTGCCGATAGGAAATCACTTTGATAAGAATAT...CCTGCAGCAGAAGAGTGGGTGGTTTGGGTAAAGTTCTACTCTAAAGAGATAGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR CAA 72 bp CCTGAGTGTATCTATGTGTGTCTTGACACTAAGTGGTaGGTTTTGCTGGTATGCCTAAGTTTGGATAGCCTA +
Preference number: 4 (lower is better)
Translates to: PECIYVCLDTKW*VLLVCLSLDSL
Trigger: TAGGCTATCCAAACTTAGGCATACCAGCAAAACCAACCACTTAGTGTCAAGACACACATAGATACACTCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
CDS-3UTR CCA 90 bp AGTAGGGATAGTTTCTTCACTGGAACTAGATATGAAGAAGCTGACAAACTCTCCCAGGCACCGGATCTTTaGAATCGACATATACATCTC +
Preference number: 4 (lower is better)
Translates to: SRDSFFTGTRYEEADKLSQAPDL*NRHIHL
Trigger: GAGATGTATATGTCGATTCCAAAGATCCGGTGCCTG...GGAGAGTTTGTCAGCTTCTTCATATCTAGTTCCAGTGAAGAAACTATCCCTACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029925.10
ENSMUST00000151249.2
CDS-3UTR CCA 90 bp CTGGAACTAGATATGAAGAAGCTGACAAACTCTCCAGTCACCTCCCATCTTTGCTCTGGAGAGAGTTTATaGTTATTGAGAAGGGTCAAT +
Preference number: 4 (lower is better)
Translates to: LELDMKKLTNSPVTSHLCSGESL*LLRRVN
Trigger: ATTGACCCTTCTCAATAACCATAAACTCTCTCCAGA...GCAAAGATGGGAGGTGACTGGAGAGTTTGTCAGCTTCTTCATATCTAGTTCCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
3UTR CAA 72 bp ACTTACAGAAGCAGACATTTGAGAAGTTTTGGCCCTTaGTGCTCAGGTAACCCGTGTATCAATTCACATAAT +
Preference number: 4 (lower is better)
Translates to: TYRSRHLRSFGP*CSGNPCINSHN
Trigger: ATTATGTGAATTGATACACGGGTTACCTGAGCACAAAGGGCCAAAACTTCTCAAATGTCTGCTTCTGTAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
CDS-3UTR TCA 90 bp AGTAGGGATAGTTTCTTCACTGGAACTAGATATGAAGAAGCTGACAAACTCTCCATATTCTTATCAAAGTaGTTTCCTATCGGCAGTCTG +
Preference number: 4 (lower is better)
Translates to: SRDSFFTGTRYEEADKLSIFLSK*FPIGSL
Trigger: CAGACTGCCGATAGGAAATCACTTTGATAAGAATAT...GGAGAGTTTGTCAGCTTCTTCATATCTAGTTCCAGTGAAGAAACTATCCCTACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029925.10
ENSMUST00000151249.2
CDS-3UTR CCA 90 bp CAGCTAGTTAAGGAACCGACATCTAAACTCCGCTTTTCCAAATGTAAATTTCATCTTTGGTTCTTGTCGTaGTTCAACTTTTACCGGCAA +
Preference number: 4 (lower is better)
Translates to: QLVKEPTSKLRFSKCKFHLWFLS*FNFYRQ
Trigger: TTGCCGGTAAAAGTTGAACCACGACAAGAACCAAAG...ATGAAATTTACATTTGGAAAAGCGGAGTTTAGATGTCGGTTCCTTAACTAGCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
CDS-3UTR GCA 90 bp AGTGGGCTAATGTGCAAAATGGAAGGATTTTATTGTGTGATACCAGTTAAGAAAATTGAGAAGGGTCAATaGCTCTACAACAGTAATCTT +
Preference number: 4 (lower is better)
Translates to: SGLMCKMEGFYCVIPVKKIEKGQ*LYNSNL
Trigger: AAGATTACTGTTGTAGAGGCATTGACCCTTCTCAAT...TTTCTTAACTGGTATCACACAATAAAATCCTTCCATTTTGCACATTAGCCCACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
CDS-3UTR CAA 90 bp AGTAGGGATAGTTTCTTCACTGGAACTAGATATGAAGAAGCTGACAAACTCTCCATGGAGGGCTTCCTCTaGCTGATCTCTCGCTCCGCT +
Preference number: 5 (lower is better)
Translates to: SRDSFFTGTRYEEADKLSMEGFL*LISRSA
Trigger: AGCGGAGCGAGAGATCAGCAAGAGGAAGCCCTCCAT...GGAGAGTTTGTCAGCTTCTTCATATCTAGTTCCAGTGAAGAAACTATCCCTACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029925.10
ENSMUST00000151249.2
CDS-3UTR CAA 90 bp AGTGGGCTAATGTGCAAAATGGAAGGATTTTATTGTGTGATACCAGTTAAGAAACGGGTAGAAGGGTGCTaGGGTGCCATGGAGGGCTTC +
Preference number: 5 (lower is better)
Translates to: SGLMCKMEGFYCVIPVKKRVEGC*GAMEGF
Trigger: GAAGCCCTCCATGGCACCCAAGCACCCTTCTACCCG...TTTCTTAACTGGTATCACACAATAAAATCCTTCCATTTTGCACATTAGCCCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
CDS-3UTR CAA 90 bp GAATCACATATAAGTAGGGATAGTTTCTTCACTGGAACTAGATATGAAGAAGCTCGGGTAGAAGGGTGCTaGGGTGCCATGGAGGGCTTC +
Preference number: 5 (lower is better)
Translates to: ESHISRDSFFTGTRYEEARVEGC*GAMEGF
Trigger: GAAGCCCTCCATGGCACCCAAGCACCCTTCTACCCG...AGCTTCTTCATATCTAGTTCCAGTGAAGAAACTATCCCTACTTATATGTGATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029925.10
ENSMUST00000151249.2
CDS-3UTR CAA 90 bp CATATTCATTTTGAATTAATGGAGGATGGTTTTGACGGCACTTTCCACCATAATATGGAGGGCTTCCTCTaGCTGATCTCTCGCTCCGCT +
Preference number: 5 (lower is better)
Translates to: HIHFELMEDGFDGTFHHNMEGFL*LISRSA
Trigger: AGCGGAGCGAGAGATCAGCAAGAGGAAGCCCTCCAT...ATTATGGTGGAAAGTGCCGTCAAAACCATCCTCCATTAATTCAAAATGAATATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029925.10
ENSMUST00000151249.2
CDS-3UTR CAA 90 bp AAAGCCAATCATTGCAATGAAAAGCAGTGTTATTCTGGGCAGTTATGGCAACTGTCTACAACAGTAATCTaGCCTTTGGGAATGTCCGTG +
Preference number: 5 (lower is better)
Translates to: KANHCNEKQCYSGQLWQLSTTVI*PLGMSV
Trigger: CACGGACATTCCCAAAGGCAAGATTACTGTTGTAGA...CAGTTGCCATAACTGCCCAGAATAACACTGCTTTTCATTGCAATGATTGGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
CDS-3UTR CAA 90 bp ATAAGTAGGGATAGTTTCTTCACTGGAACTAGATATGAAGAAGCTGACAAACTCGCAGGCACCGGATCTTaGGAATCGACATATACATCT +
Preference number: 5 (lower is better)
Translates to: ISRDSFFTGTRYEEADKLAGTGS*ESTYTS
Trigger: AGATGTATATGTCGATTCCAAAGATCCGGTGCCTGC...GAGTTTGTCAGCTTCTTCATATCTAGTTCCAGTGAAGAAACTATCCCTACTTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029925.10
ENSMUST00000151249.2
CDS-3UTR CAA 90 bp TCACATATAAGTAGGGATAGTTTCTTCACTGGAACTAGATATGAAGAAGCTGACGAGAGTTTATGGTTATaGAGAAGGGTCAATGCCTCT +
Preference number: 5 (lower is better)
Translates to: SHISRDSFFTGTRYEEADESLWL*RRVNAS
Trigger: AGAGGCATTGACCCTTCTCAATAACCATAAACTCTC...GTCAGCTTCTTCATATCTAGTTCCAGTGAAGAAACTATCCCTACTTATATGTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029925.10
CDS GCA 72 bp CTCCTGCAGGAGGTCGCGGGTAGAAGGGTGCTTGGGTaGCATGGAGGGCTTCCTCTTGCTGATCTCTCGCTC +
Preference number: 6 (lower is better)
Translates to: LLQEVAGRRVLG*HGGLPLADLSL
Trigger: GAGCGAGAGATCAGCAAGAGGAAGCCCTCCATGGCACCCAAGCACCCTTCTACCCGCGACCTCCTGCAGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029925.10
ENSMUST00000151249.2
CDS CAA 72 bp GTAGAAGGGTGCTTGGGTGCCATGGAGGGCTTCCTCTaGCTGATCTCTCGCTCCGCTCGCTTCTCCACGTTG +
Preference number: 6 (lower is better)
Translates to: VEGCLGAMEGFL*LISRSARFSTL
Trigger: CAACGTGGAGAAGCGAGCGGAGCGAGAGATCAGCAAGAGGAAGCCCTCCATGGCACCCAAGCACCCTTCTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029925.10
ENSMUST00000151249.2
CDS CAA 72 bp GGTTCAACTTTTACCGGCAAGGCAGGCACCGGATCTTaGGAATCGACATATACATCTCTTAGCAATGACAGC +
Preference number: 6 (lower is better)
Translates to: GSTFTGKAGTGS*ESTYTSLSNDS
Trigger: GCTGTCATTGCTAAGAGATGTATATGTCGATTCCAAAGATCCGGTGCCTGCCTTGCCGGTAAAAGTTGAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029925.10
ENSMUST00000151249.2
CDS CCA 72 bp GTTCAACTTTTACCGGCAAGGCAGGCACCGGATCTTTaGAATCGACATATACATCTCTTAGCAATGACAGCA +
Preference number: 6 (lower is better)
Translates to: VQLLPARQAPDL*NRHIHLLAMTA
Trigger: TGCTGTCATTGCTAAGAGATGTATATGTCGATTCCAAAGATCCGGTGCCTGCCTTGCCGGTAAAAGTTGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029925.10
ENSMUST00000151249.2
CDS CCA 72 bp TCGCTGGATTCTTCTCATCTTCCACATCTTTTCCCGTaGAATCTCGAGGCAAGTATGTCTGTCTTTGGGAAT +
Preference number: 6 (lower is better)
Translates to: SLDSSHLPHLFP*NLEASMSVFGN
Trigger: ATTCCCAAAGACAGACATACTTGCCTCGAGATTCCACGGGAAAAGATGTGGAAGATGAGAAGAATCCAGCGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151249.2