RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NDUFAF2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068184

Ensembl transcript IDs: ENSMUST00000163558.3, ENSMUST00000223734.2, ENSMUST00000225702.2

Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCAAGCAAGCTGAAAACCAAAGCCGAGTGGAGCGCAAATGCATGTaGGGAGGAAGCGCGTCTACTCCAGTGTCTTCTGGCACCTGGCTC +
Preference number: 1 (lower is better)
Translates to: PKQAENQSRVERKCM*GGSASTPVSSGTWL
Trigger: GAGCCAGGTGCCAGAAGACACTGGAGTAGACGCGCTTCCTCCCCACATGCATTTGCGCTCCACTCGGCTTTGGTTTTCAGCTTGCTTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR GCA 90 bp ACCACCACAGTGGCGGACTGCCAGTCAGTCATGGCATGGTGGCAGTaGAGTGTTCCTCTGTATACTCTTCCACCTGGATGTCCTGGTGAT +
Preference number: 1 (lower is better)
Translates to: TTTVADCQSVMAWWQ*SVPLYTLPPGCPGD
Trigger: ATCACCAGGACATCCAGGTGGAAGAGTATACAGAGGAACACTGCACTGCCACCATGCCATGACTGACTGGCAGTCCGCCACTGTGGTGGT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 90 bp GGGCTTAAGACACTGGAAGTCAGTATTCTGCTAGCAGCCTTCAGATaGAGATGTGGAACTCTCGGGTCCTCCTGCACCATGCCTGCCTGG +
Preference number: 1 (lower is better)
Translates to: GLKTLEVSILLAAFR*RCGTLGSSCTMPAW
Trigger: CCAGGCAGGCATGGTGCAGGAGGACCCGAGAGTTCCACATCTTCATCTGAAGGCTGCTAGCAGAATACTGACTTCCAGTGTCTTAAGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 90 bp AGAAACATGGCAACACGCAGGAGGACATGGTGCTGCTGGAGGAGATaGGAGTTGCACATCTGGATCCACAGGCAGCAGAAAGAGAACTGG +
Preference number: 1 (lower is better)
Translates to: RNMATRRRTWCCWRR*ELHIWIHRQQKENW
Trigger: CCAGTTCTCTTTCTGCTGCCTGTGGATCCAGATGTGCAACTCTCATCTCCTCCAGCAGCACCATGTCCTCCTGCGTGTTGCCATGTTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR CCA 90 bp AGCTATCTCTGGAGAGCTGGAAGCACAGTCTTTCTCTTCACTTCCTaGGCACTTTGTCACTTAAGCCACAGAACAGCCCTGGCACACCGC +
Preference number: 1 (lower is better)
Translates to: SYLWRAGSTVFLFTS*ALCHLSHRTALAHR
Trigger: GCGGTGTGCCAGGGCTGTTCTGTGGCTTAAGTGACAAAGTGCCCAGGAAGTGAAGAGAAAGACTGTGCTTCCAGCTCTCCAGAGATAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 90 bp TCTTGGAGCCTGTGCAGAAACCAAAGTCTTCTCTCCCAAGCAAGCTaGAAACCAAAGCCGAGTGGAGCGCAAATGCATGTGGGGAGGAAG +
Preference number: 1 (lower is better)
Translates to: SWSLCRNQSLLSQAS*KPKPSGAQMHVGRK
Trigger: CTTCCTCCCCACATGCATTTGCGCTCCACTCGGCTTTGGTTTTCAGCTTGCTTGGGAGAGAAGACTTTGGTTTCTGCACAGGCTCCAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 90 bp CCATATCAAACAGGCTCATCTGGGACGTCCCCCAAGTCGTCACCATaGCCAGCTATCTCTGGAGAGCTGGAAGCACAGTCTTTCTCTTCA +
Preference number: 1 (lower is better)
Translates to: PYQTGSSGTSPKSSP*PAISGELEAQSFSS
Trigger: TGAAGAGAAAGACTGTGCTTCCAGCTCTCCAGAGATAGCTGGTCATGGTGACGACTTGGGGGACGTCCCAGATGAGCCTGTTTGATATGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 90 bp GGTAGCGATACTCAGCAATTTGGCAGATCTTTTTACATCAGATTGTaGTTCGTTAAGCAGGACAAATGGACAGTCCTCACTCCCTGCTCT +
Preference number: 1 (lower is better)
Translates to: GSDTQQFGRSFYIRL*FVKQDKWTVLTPCS
Trigger: AGAGCAGGGAGTGAGGACTGTCCATTTGTCCTGCTTAACGAATCACAATCTGATGTAAAAAGATCTGCCAAATTGCTGAGTATCGCTACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 90 bp AACCACAGGAGCCACGAGGATATCTTTGTCACTGTTCTTTTGCTGTaGGGAGACACCATGACCACTGCACCTCTTATAAAGGAAAACATT +
Preference number: 1 (lower is better)
Translates to: NHRSHEDIFVTVLLL*GDTMTTAPLIKENI
Trigger: AATGTTTTCCTTTATAAGAGGTGCAGTGGTCATGGTGTCTCCTCACAGCAAAAGAACAGTGACAAAGATATCCTCGTGGCTCCTGTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 90 bp AAAATACGGGGCAGAGGCGTGCCCTTTAACTTGAGTTGCAGTAGGTaGAGGCAAGAGTTCTTCACTGGTTTCTTTACCGAGTTTATCTTT +
Preference number: 1 (lower is better)
Translates to: KIRGRGVPFNLSCSR*RQEFFTGFFTEFIF
Trigger: AAAGATAAACTCGGTAAAGAAACCAGTGAAGAACTCTTGCCTTCACCTACTGCAACTCAAGTTAAAGGGCACGCCTCTGCCCCGTATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223734.2
3UTR TCA 90 bp ATACTCTTCCACCTGGATGTCCTGGTGATCACTCATGAGTATCGTTaGCTGAACCTCTTCATAATATCTGTAGAAAACCCTCCCTCTGAA +
Preference number: 1 (lower is better)
Translates to: ILFHLDVLVITHEYR*LNLFIISVENPPSE
Trigger: TTCAGAGGGAGGGTTTTCTACAGATATTATGAAGAGGTTCAGTCAACGATACTCATGAGTGATCACCAGGACATCCAGGTGGAAGAGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 90 bp GTTCCTCTGTATACTCTTCCACCTGGATGTCCTGGTGATCACTCATaGGTATCGTTGACTGAACCTCTTCATAATATCTGTAGAAAACCC +
Preference number: 1 (lower is better)
Translates to: VPLYTLPPGCPGDHS*VSLTEPLHNICRKP
Trigger: GGGTTTTCTACAGATATTATGAAGAGGTTCAGTCAACGATACTCATGAGTGATCACCAGGACATCCAGGTGGAAGAGTATACAGAGGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 90 bp GCAGGGCATTCATTGACTTTGTCATTCATTGACTTTGTCATTCATTaGCTTTGTCATTCATTGACTTTGTCTTTTGCCATCTTCTGGCGT +
Preference number: 1 (lower is better)
Translates to: AGHSLTLSFIDFVIH*LCHSLTLSFAIFWR
Trigger: ACGCCAGAAGATGGCAAAAGACAAAGTCAATGAATGACAAAGTCAATGAATGACAAAGTCAATGAATGACAAAGTCAATGAATGCCCTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223734.2
3UTR-3UTR TCA 90 bp GCCCACTCCAAGGCCCCACCTCCAAATAGTGCCCCTTCCTCTGAGCGTATAGGACCCAAGTCGTCACCATaGCCAGCTATCTCTGGAGAG +
Preference number: 2 (lower is better)
Translates to: AHSKAPPPNSAPSSERIGPKSSP*PAISGE
Trigger: CTCTCCAGAGATAGCTGGTCATGGTGACGACTTGGG...TCCTATACGCTCAGAGGAAGGGGCACTATTTGGAGGTGGGGCCTTGGAGTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR-3UTR CCA 90 bp AATTCCTTCAACAAAGGCACGCCCACTCCAAGGCCCCACCTCCAAATAGTGCCCGTCAAACCACCACAGTaGCGGACTGCCAGTCAGTCA +
Preference number: 2 (lower is better)
Translates to: NSFNKGTPTPRPHLQIVPVKPPQ*RTASQS
Trigger: TGACTGACTGGCAGTCCGCCACTGTGGTGGTTTGAC...GGGCACTATTTGGAGGTGGGGCCTTGGAGTGGGCGTGCCTTTGTTGAAGGAATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR-3UTR CCA 90 bp AGTCATGGCATGGTGGCAGTGCAGTGTTCCTCTGTATACTCTTCCACCTGGATGTACTCCAGTGTCTTCTaGCACCTGGCTCAGTCAGCC +
Preference number: 2 (lower is better)
Translates to: SHGMVAVQCSSVYSSTWMYSSVF*HLAQSA
Trigger: GGCTGACTGAGCCAGGTGCCAGAAGACACTGGAGTA...CATCCAGGTGGAAGAGTATACAGAGGAACACTGCACTGCCACCATGCCATGACT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR-3UTR TCA 90 bp GCCCACTCCAAGGCCCCACCTCCAAATAGTGCCCCTTCCTCTGAGCGTATAGGACACACAAAGAAACTTTaGAGGTGTAATTCTTCCACG +
Preference number: 2 (lower is better)
Translates to: AHSKAPPPNSAPSSERIGHTKKL*RCNSST
Trigger: CGTGGAAGAATTACACCTTCAAAGTTTCTTTGTGTG...TCCTATACGCTCAGAGGAAGGGGCACTATTTGGAGGTGGGGCCTTGGAGTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR-3UTR CCA 90 bp GCCTGTGCAGAAACCAAAGTCTTCTCTCCCAAGCAAGCTGAAAACCAAAGCCGAGTTAAGCAGGACAAATaGACAGTCCTCACTCCCTGC +
Preference number: 2 (lower is better)
Translates to: ACAETKVFSPKQAENQSRVKQDK*TVLTPC
Trigger: GCAGGGAGTGAGGACTGTCCATTTGTCCTGCTTAAC...TCGGCTTTGGTTTTCAGCTTGCTTGGGAGAGAAGACTTTGGTTTCTGCACAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR-3UTR CCA 90 bp AATTCCTTCAACAAAGGCACGCCCACTCCAAGGCCCCACCTCCAAATAGTGCCCTGGAGCTATTTTGGATaGAGGACATCCGTAAAGAAC +
Preference number: 2 (lower is better)
Translates to: NSFNKGTPTPRPHLQIVPWSYFG*RTSVKN
Trigger: GTTCTTTACGGATGTCCTCCATCCAAAATAGCTCCA...GGGCACTATTTGGAGGTGGGGCCTTGGAGTGGGCGTGCCTTTGTTGAAGGAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR-3UTR CCA 90 bp AGTCATGGCATGGTGGCAGTGCAGTGTTCCTCTGTATACTCTTCCACCTGGATGCTCCCCAAATCTTCTTaGAGCCTGTGCAGAAACCAA +
Preference number: 2 (lower is better)
Translates to: SHGMVAVQCSSVYSSTWMLPKSS*SLCRNQ
Trigger: TTGGTTTCTGCACAGGCTCCAAGAAGATTTGGGGAG...CATCCAGGTGGAAGAGTATACAGAGGAACACTGCACTGCCACCATGCCATGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR-3UTR TCA 90 bp TTCCCTTCCAAAATACGGGGCAGAGGCGTGCCCTTTAACTTGAGTTGCAGTAGGGGGCAGGGCATTCATTaGCTTTGTCATTCATTGACT +
Preference number: 2 (lower is better)
Translates to: FPSKIRGRGVPFNLSCSRGQGIH*LCHSLT
Trigger: AGTCAATGAATGACAAAGTCAATGAATGCCCTGCCC...CCTACTGCAACTCAAGTTAAAGGGCACGCCTCTGCCCCGTATTTTGGAAGGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000223734.2
3UTR-3UTR CCA 90 bp CCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCAGCCAGTCAGTCATGGCATaGTGGCAGTGCAGTGTTCCT +
Preference number: 2 (lower is better)
Translates to: PLAHAQIICLPLRTQDVSQSVMA*WQCSVP
Trigger: AGGAACACTGCACTGCCACCATGCCATGACTGACTG...GCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR-3UTR TCA 90 bp GGGCTGCCTTACAGTTTCAGAGGTTTAGTCCATTATTGTCATGGCAAGAAACATTGCTGCTGGAGGAGATaGGAGTTGCACATCTGGATC +
Preference number: 2 (lower is better)
Translates to: GLPYSFRGLVHYCHGKKHCCWRR*ELHIWI
Trigger: GATCCAGATGTGCAACTCTCATCTCCTCCAGCAGCA...ATGTTTCTTGCCATGACAATAATGGACTAAACCTCTGAAACTGTAAGGCAGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR-3UTR GCA 90 bp CCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCAGCATGGCATGGTGGCAGTaGAGTGTTCCTCTGTATACT +
Preference number: 2 (lower is better)
Translates to: PLAHAQIICLPLRTQDVSMAWWQ*SVPLYT
Trigger: AGTATACAGAGGAACACTGCACTGCCACCATGCCAT...GCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR-3UTR CCA 90 bp TGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCAGCGCCATCTGGGATGCTCATGTaGGCTCCAGAAGACACTAAA +
Preference number: 2 (lower is better)
Translates to: WHMRRLFVYHLEHRMSAPSGMLM*APEDTK
Trigger: TTTAGTGTCTTCTGGAGCCCACATGAGCATCCCAGA...TGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR CAA 90 bp CATTTAATTGGGGCTGCCTTACAGTTTCAGAGGTTTAGTCCATTATaGTCATGGCAAGAAACATGGCAACACGCAGGAGGACATGGTGCT +
Preference number: 2 (lower is better)
Translates to: HLIGAALQFQRFSPL*SWQETWQHAGGHGA
Trigger: AGCACCATGTCCTCCTGCGTGTTGCCATGTTTCTTGCCATGACAATAATGGACTAAACCTCTGAAACTGTAAGGCAGCCCCAATTAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR-3UTR CCA 90 bp TTCCCTTCCAAAATACGGGGCAGAGGCGTGCCCTTTAACTTGAGTTGCAGTAGGGCAAGAGTTCTTCACTaGTTTCTTTACCGAGTTTAT +
Preference number: 2 (lower is better)
Translates to: FPSKIRGRGVPFNLSCSRARVLH*FLYRVY
Trigger: ATAAACTCGGTAAAGAAACCAGTGAAGAACTCTTGC...CCTACTGCAACTCAAGTTAAAGGGCACGCCTCTGCCCCGTATTTTGGAAGGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223734.2
3UTR-3UTR GCA 90 bp TTTAGTCCATTATTGTCATGGCAAGAAACATGGCAACACGCAGGAGGACATGGTTCTTCTTGGAGCCTGTaGAGAAACCAAAGTCTTCTC +
Preference number: 2 (lower is better)
Translates to: FSPLLSWQETWQHAGGHGSSWSL*RNQSLL
Trigger: GAGAAGACTTTGGTTTCTGCACAGGCTCCAAGAAGA...ACCATGTCCTCCTGCGTGTTGCCATGTTTCTTGCCATGACAATAATGGACTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR-3UTR CCA 90 bp TTTAGTCCATTATTGTCATGGCAAGAAACATGGCAACACGCAGGAGGACATGGTTTTCTCTTCACTTCCTaGGCACTTTGTCACTTAAGC +
Preference number: 2 (lower is better)
Translates to: FSPLLSWQETWQHAGGHGFLFTS*ALCHLS
Trigger: GCTTAAGTGACAAAGTGCCCAGGAAGTGAAGAGAAA...ACCATGTCCTCCTGCGTGTTGCCATGTTTCTTGCCATGACAATAATGGACTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR-3UTR CCA 90 bp ACCTCTTATAAAGGAAAACATTTAATTGGGGCTGCCTTACAGTTTCAGAGGTTTTCAGTCATGGCATGGTaGCAGTGCAGTGTTCCTCTG +
Preference number: 2 (lower is better)
Translates to: TSYKGKHLIGAALQFQRFSVMAW*QCSVPL
Trigger: CAGAGGAACACTGCACTGCCACCATGCCATGACTGA...AAACCTCTGAAACTGTAAGGCAGCCCCAATTAAATGTTTTCCTTTATAAGAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 72 bp ACAGGCTCATCTGGGACGTCCCCCAAGTCGTCACCATaGCCAGCTATCTCTGGAGAGCTGGAAGCACAGTCT +
Preference number: 3 (lower is better)
Translates to: TGSSGTSPKSSP*PAISGELEAQS
Trigger: AGACTGTGCTTCCAGCTCTCCAGAGATAGCTGGTCATGGTGACGACTTGGGGGACGTCCCAGATGAGCCTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR GCA 72 bp GTGGCGGACTGCCAGTCAGTCATGGCATGGTGGCAGTaGAGTGTTCCTCTGTATACTCTTCCACCTGGATGT +
Preference number: 3 (lower is better)
Translates to: VADCQSVMAWWQ*SVPLYTLPPGC
Trigger: ACATCCAGGTGGAAGAGTATACAGAGGAACACTGCACTGCCACCATGCCATGACTGACTGGCAGTCCGCCAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR GCA 72 bp GATGAAGATGTGGAACTCTCGGGTCCTCCTGCACCATaGCTGCCTGGATGCTGCCATGTTTCCACCATGATG +
Preference number: 3 (lower is better)
Translates to: DEDVELSGPPAP*LPGCCHVSTMM
Trigger: CATCATGGTGGAAACATGGCAGCATCCAGGCAGGCATGGTGCAGGAGGACCCGAGAGTTCCACATCTTCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR CCA 72 bp GTCAAACCACCACAGTGGCGGACTGCCAGTCAGTCATaGCATGGTGGCAGTGCAGTGTTCCTCTGTATACTC +
Preference number: 3 (lower is better)
Translates to: VKPPQWRTASQS*HGGSAVFLCIL
Trigger: GAGTATACAGAGGAACACTGCACTGCCACCATGCCATGACTGACTGGCAGTCCGCCACTGTGGTGGTTTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR CCA 72 bp GACGTCCCCCAAGTCGTCACCATGACCAGCTATCTCTaGAGAGCTGGAAGCACAGTCTTTCTCTTCACTTCC +
Preference number: 3 (lower is better)
Translates to: DVPQVVTMTSYL*RAGSTVFLFTS
Trigger: GGAAGTGAAGAGAAAGACTGTGCTTCCAGCTCTCCAGAGATAGCTGGTCATGGTGACGACTTGGGGGACGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR CCA 72 bp TGTGGAACTCTCGGGTCCTCCTGCACCATGCCTGCCTaGATGCTGCCATGTTTCCACCATGATGATAATGGA +
Preference number: 3 (lower is better)
Translates to: CGTLGSSCTMPA*MLPCFHHDDNG
Trigger: TCCATTATCATCATGGTGGAAACATGGCAGCATCCAGGCAGGCATGGTGCAGGAGGACCCGAGAGTTCCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR CCA 72 bp AGTCAGTATTCTGCTAGCAGCCTTCAGATGAAGATGTaGAACTCTCGGGTCCTCCTGCACCATGCCTGCCTG +
Preference number: 3 (lower is better)
Translates to: SQYSASSLQMKM*NSRVLLHHACL
Trigger: CAGGCAGGCATGGTGCAGGAGGACCCGAGAGTTCCACATCTTCATCTGAAGGCTGCTAGCAGAATACTGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 72 bp CAGAGGGTCCACGCCCACTTTTATGGACAAGTAGGATaGTGTCACCTCTCCCCAAATCTTCTTGGAGCCTGT +
Preference number: 3 (lower is better)
Translates to: QRVHAHFYGQVG*CHLSPNLLGAC
Trigger: ACAGGCTCCAAGAAGATTTGGGGAGAGGTGACATCATCCTACTTGTCCATAAAAGTGGGCGTGGACCCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 72 bp ACACTGGAAGTCAGTATTCTGCTAGCAGCCTTCAGATaGAGATGTGGAACTCTCGGGTCCTCCTGCACCATG +
Preference number: 3 (lower is better)
Translates to: TLEVSILLAAFR*RCGTLGSSCTM
Trigger: CATGGTGCAGGAGGACCCGAGAGTTCCACATCTTCATCTGAAGGCTGCTAGCAGAATACTGACTTCCAGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR CCA 72 bp CTCTATATGACCAGTCTACCCTCTGGGATGCTCATGTaGGCTCCAGAAGACACTAAACTGAGGCTGAGACCT +
Preference number: 3 (lower is better)
Translates to: LYMTSLPSGMLM*APEDTKLRLRP
Trigger: AGGTCTCAGCCTCAGTTTAGTGTCTTCTGGAGCCCACATGAGCATCCCAGAGGGTAGACTGGTCATATAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 72 bp GGCAGAGGCGTGCCCTTTAACTTGAGTTGCAGTAGGTaGAGGCAAGAGTTCTTCACTGGTTTCTTTACCGAG +
Preference number: 3 (lower is better)
Translates to: GRGVPFNLSCSR*RQEFFTGFFTE
Trigger: CTCGGTAAAGAAACCAGTGAAGAACTCTTGCCTTCACCTACTGCAACTCAAGTTAAAGGGCACGCCTCTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223734.2
3UTR TCA 72 bp CTTCCAAAATACGGGGCAGAGGCGTGCCCTTTAACTTaGGTTGCAGTAGGTGAAGGCAAGAGTTCTTCACTG +
Preference number: 3 (lower is better)
Translates to: LPKYGAEACPLT*VAVGEGKSSSL
Trigger: CAGTGAAGAACTCTTGCCTTCACCTACTGCAACTCAAGTTAAAGGGCACGCCTCTGCCCCGTATTTTGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223734.2
3UTR-3UTR CAA 90 bp TTCCCTTCCAAAATACGGGGCAGAGGCGTGCCCTTTAACTTGAGTTGCAGTAGGAGGGCAGGGCATTCATaGACTTTGTCATTCATTGAC +
Preference number: 3 (lower is better)
Translates to: FPSKIRGRGVPFNLSCSRRAGHS*TLSFID
Trigger: GTCAATGAATGACAAAGTCAATGAATGCCCTGCCCT...CCTACTGCAACTCAAGTTAAAGGGCACGCCTCTGCCCCGTATTTTGGAAGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223734.2
3UTR TCA 72 bp AGCCACGAGGATATCTTTGTCACTGTTCTTTTGCTGTaGGGAGACACCATGACCACTGCACCTCTTATAAAG +
Preference number: 3 (lower is better)
Translates to: SHEDIFVTVLLL*GDTMTTAPLIK
Trigger: CTTTATAAGAGGTGCAGTGGTCATGGTGTCTCCTCACAGCAAAAGAACAGTGACAAAGATATCCTCGTGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 72 bp GGATGCTGCCATGTTTCCACCATGATGATAATGGATTaGATCGCTGAACCTATAAGCCAGCCCCAATTAAAC +
Preference number: 3 (lower is better)
Translates to: GCCHVSTMMIMD*IAEPISQPQLN
Trigger: GTTTAATTGGGGCTGGCTTATAGGTTCAGCGATTCAATCCATTATCATCATGGTGGAAACATGGCAGCATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 72 bp CACCTGGATGTCCTGGTGATCACTCATGAGTATCGTTaGCTGAACCTCTTCATAATATCTGTAGAAAACCCT +
Preference number: 3 (lower is better)
Translates to: HLDVLVITHEYR*LNLFIISVENP
Trigger: AGGGTTTTCTACAGATATTATGAAGAGGTTCAGTCAACGATACTCATGAGTGATCACCAGGACATCCAGGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 72 bp TATACTCTTCCACCTGGATGTCCTGGTGATCACTCATaGGTATCGTTGACTGAACCTCTTCATAATATCTGT +
Preference number: 3 (lower is better)
Translates to: YTLPPGCPGDHS*VSLTEPLHNIC
Trigger: ACAGATATTATGAAGAGGTTCAGTCAACGATACTCATGAGTGATCACCAGGACATCCAGGTGGAAGAGTATA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 72 bp CCATGTTTCCACCATGATGATAATGGATTGAATCGCTaGACCTATAAGCCAGCCCCAATTAAACATTGTCCT +
Preference number: 3 (lower is better)
Translates to: PCFHHDDNGLNR*TYKPAPIKHCP
Trigger: AGGACAATGTTTAATTGGGGCTGGCTTATAGGTTCAGCGATTCAATCCATTATCATCATGGTGGAAACATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR-3UTR CAA 90 bp GGGCTGCCTTACAGTTTCAGAGGTTTAGTCCATTATTGTCATGGCAAGAAACATAGATACAACCTGTTTTaGAGGAACTCTCGTTTTGTG +
Preference number: 3 (lower is better)
Translates to: GLPYSFRGLVHYCHGKKHRYNLF*RNSRFV
Trigger: CACAAAACGAGAGTTCCTCAAAAACAGGTTGTATCT...ATGTTTCTTGCCATGACAATAATGGACTAAACCTCTGAAACTGTAAGGCAGCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR TCA 72 bp ACTCAGCAATTTGGCAGATCTTTTTACATCAGATTGTaGTTCGTTAAGCAGGACAAATGGACAGTCCTCACT +
Preference number: 3 (lower is better)
Translates to: TQQFGRSFYIRL*FVKQDKWTVLT
Trigger: AGTGAGGACTGTCCATTTGTCCTGCTTAACGAATCACAATCTGATGTAAAAAGATCTGCCAAATTGCTGAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR CAA 72 bp TGGAAGCACAGTCTTTCTCTTCACTTCCTGGGCACTTaGTCACTTAAGCCACAGAACAGCCCTGGCACACCG +
Preference number: 4 (lower is better)
Translates to: WKHSLSLHFLGT*SLKPQNSPGTP
Trigger: CGGTGTGCCAGGGCTGTTCTGTGGCTTAAGTGACAAAGTGCCCAGGAAGTGAAGAGAAAGACTGTGCTTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR CAA 72 bp ATCCACAGGCAGCAGAAAGAGAACTGGCTAGAGCTTTaGCGACCTCAAGCCCCACCCCCTAGTTTCACAATT +
Preference number: 4 (lower is better)
Translates to: IHRQQKENWLEL*RPQAPPPSFTI
Trigger: AATTGTGAAACTAGGGGGTGGGGCTTGAGGTCGCAAAAGCTCTAGCCAGTTCTCTTTCTGCTGCCTGTGGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
3UTR CAA 72 bp GGGGCTGCCTTACAGTTTCAGAGGTTTAGTCCATTATaGTCATGGCAAGAAACATGGCAACACGCAGGAGGA +
Preference number: 4 (lower is better)
Translates to: GAALQFQRFSPL*SWQETWQHAGG
Trigger: TCCTCCTGCGTGTTGCCATGTTTCTTGCCATGACAATAATGGACTAAACCTCTGAAACTGTAAGGCAGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225702.2
CDS-3UTR GCA 90 bp CAATGCTATGACTTCAGGGCAGGGCATTCATTGACTTTGTCATTCATTGACTTTCTGGCTGAAAAGTCTTaGCAGTGCTGGTGGGAGCCA +
Preference number: 4 (lower is better)
Translates to: QCYDFRAGHSLTLSFIDFLAEKS*QCWWEP
Trigger: TGGCTCCCACCAGCACTGGCAAGACTTTTCAGCCAG...AAAGTCAATGAATGACAAAGTCAATGAATGCCCTGCCCTGAAGTCATAGCATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163558.3
CDS-3UTR CCA 90 bp CAATGCTATGACTTCAGGGCAGGGCATTCATTGACTTTGTCATTCATTGACTTTTCTTTTGCCATCTTCTaGCGTCCAGGACCCTGGCTG +
Preference number: 4 (lower is better)
Translates to: QCYDFRAGHSLTLSFIDFSFAIF*RPGPWL
Trigger: CAGCCAGGGTCCTGGACGCCAGAAGATGGCAAAAGA...AAAGTCAATGAATGACAAAGTCAATGAATGCCCTGCCCTGAAGTCATAGCATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163558.3
CDS-3UTR CCA 90 bp GTTGCAGTAGGTGAAGGCAAGAGTTCTTCACTGGTTTCTTTACCGAGTTTATCTTCCTTCCCACTCGGTTaGGATGTCTCCTGCTTCATA +
Preference number: 4 (lower is better)
Translates to: VAVGEGKSSSLVSLPSLSSFPLG*DVSCFI
Trigger: TATGAAGCAGGAGACATCCCAACCGAGTGGGAAGGA...AGATAAACTCGGTAAAGAAACCAGTGAAGAACTCTTGCCTTCACCTACTGCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223734.2
CDS-3UTR CCA 90 bp CAATGCTATGACTTCAGGGCAGGGCATTCATTGACTTTGTCATTCATTGACTTTTGCTTCCCACTCGGTTaGGATGTCTCCTGCTTCATA +
Preference number: 4 (lower is better)
Translates to: QCYDFRAGHSLTLSFIDFCFPLG*DVSCFI
Trigger: TATGAAGCAGGAGACATCCCAACCGAGTGGGAAGCA...AAAGTCAATGAATGACAAAGTCAATGAATGCCCTGCCCTGAAGTCATAGCATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163558.3
CDS-3UTR TCA 90 bp CAATGCTATGACTTCAGGGCAGGGCATTCATTGACTTTGTCATTCATTGACTTTTTGAGTTGCAGTAGGTaGAGGCAAGAGTTCTTCACT +
Preference number: 4 (lower is better)
Translates to: QCYDFRAGHSLTLSFIDFLSCSR*RQEFFT
Trigger: AGTGAAGAACTCTTGCCTTCACCTACTGCAACTCAA...AAAGTCAATGAATGACAAAGTCAATGAATGCCCTGCCCTGAAGTCATAGCATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163558.3
CDS-3UTR GCA 90 bp CAATGCTATGACTTCAGGGCAGGGCATTCATTGACTTTGTCATTCATTGACTTTTGTTCTTCTAATCCATaGTTCCCACTCGGTTGGGAT +
Preference number: 4 (lower is better)
Translates to: QCYDFRAGHSLTLSFIDFCSSNP*FPLGWD
Trigger: ATCCCAACCGAGTGGGAAGCATGGATTAGAAGAACA...AAAGTCAATGAATGACAAAGTCAATGAATGCCCTGCCCTGAAGTCATAGCATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163558.3
CDS-3UTR GCA 90 bp CAATGCTATGACTTCAGGGCAGGGCATTCATTGACTTTGTCATTCATTGACTTTATTGACTTTGTCTTTTaGCATCTTCTGGCGTCCAGG +
Preference number: 4 (lower is better)
Translates to: QCYDFRAGHSLTLSFIDFIDFVF*HLLASR
Trigger: CCTGGACGCCAGAAGATGGCAAAAGACAAAGTCAAT...AAAGTCAATGAATGACAAAGTCAATGAATGCCCTGCCCTGAAGTCATAGCATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163558.3
CDS-3UTR GCA 90 bp GTTGCAGTAGGTGAAGGCAAGAGTTCTTCACTGGTTTCTTTACCGAGTTTATCTCTCTTTTCTGTTCGCTaGTTCTACAATCCTTTTCTC +
Preference number: 4 (lower is better)
Translates to: VAVGEGKSSSLVSLPSLSLFSVR*FYNPFL
Trigger: GAGAAAAGGATTGTAGAAGCAGCGAACAGAAAAGAG...AGATAAACTCGGTAAAGAAACCAGTGAAGAACTCTTGCCTTCACCTACTGCAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223734.2
CDS-3UTR GCA 90 bp CAATGCTATGACTTCAGGGCAGGGCATTCATTGACTTTGTCATTCATTGACTTTCTCTTTTCTGTTCGCTaGTTCTACAATCCTTTTCTC +
Preference number: 4 (lower is better)
Translates to: QCYDFRAGHSLTLSFIDFLFSVR*FYNPFL
Trigger: GAGAAAAGGATTGTAGAAGCAGCGAACAGAAAAGAG...AAAGTCAATGAATGACAAAGTCAATGAATGCCCTGCCCTGAAGTCATAGCATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163558.3
CDS-3UTR CCA 90 bp CAATGCTATGACTTCAGGGCAGGGCATTCATTGACTTTGTCATTCATTGACTTTGCAAGAGTTCTTCACTaGTTTCTTTACCGAGTTTAT +
Preference number: 4 (lower is better)
Translates to: QCYDFRAGHSLTLSFIDFARVLH*FLYRVY
Trigger: ATAAACTCGGTAAAGAAACCAGTGAAGAACTCTTGC...AAAGTCAATGAATGACAAAGTCAATGAATGCCCTGCCCTGAAGTCATAGCATTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163558.3