Pregenerated sensors for NDUFAF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027305Ensembl transcript IDs: ENSMUST00000028768.2, ENSMUST00000110801.8, ENSMUST00000110802.8
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | CTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTCTaGTTTGTGACCACTACTCTACTGACGTCCCCAGTT | + |
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Preference number: 3 (lower is better) Translates to: LRKGSGRQKGSV*FVTTTLLTSPV Trigger: AACTGGGGACGTCAGTAGAGTAGTGGTCACAAAGCAGACAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR TCA 90 bp | TCGGGTAGACAGAAAGGCTCTGTCTGCTTTGTGACCACTACTCTACTGACGTCCACTCCGTGTCTTGCCTaGTATTTACCATCCAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: SGRQKGSVCFVTTTLLTSTPCLA*YLPSKA Trigger: GGCCTTGGATGGTAAATATCAGGCAAGACACGGAGT...GGACGTCAGTAGAGTAGTGGTCACAAAGCAGACAGAGCCTTTCTGTCTACCCGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR TCA 90 bp | CGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTCTGCTTTGTGACCACTACTCTAACTCCGTGTCTTGCCTaGTATTTACCATCCAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: RKGSGRQKGSVCFVTTTLTPCLA*YLPSKA Trigger: GGCCTTGGATGGTAAATATCAGGCAAGACACGGAGT...TAGAGTAGTGGTCACAAAGCAGACAGAGCCTTTCTGTCTACCCGACCCCTTTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR GCA 90 bp | CGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTCTGCTTTGTGACCACTACTCTATCTTCAGTCTTTCCCTaGTGGGAGGCTCTGTCAACA | + |
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Preference number: 4 (lower is better) Translates to: RKGSGRQKGSVCFVTTTLSSVFP*WEALST Trigger: TGTTGACAGAGCCTCCCAGCAGGGAAAGACTGAAGA...TAGAGTAGTGGTCACAAAGCAGACAGAGCCTTTCTGTCTACCCGACCCCTTTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CCA 90 bp | CTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTCTGCTTTGTGACCACTACTTCAGTCTTTCCCTGCTaGGAGGCTCTGTCAACAGAA | + |
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Preference number: 4 (lower is better) Translates to: LRKGSGRQKGSVCFVTTTSVFPC*EALSTE Trigger: TTCTGTTGACAGAGCCTCCCAGCAGGGAAAGACTGA...AGTAGTGGTCACAAAGCAGACAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR TCA 90 bp | AAGGGGTCGGGTAGACAGAAAGGCTCTGTCTGCTTTGTGACCACTACTCTACTGTCTGGGCCTCTCAAATaGGCCACAATTTCATCCTTC | + |
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Preference number: 4 (lower is better) Translates to: KGSGRQKGSVCFVTTTLLSGPLK*ATISSF Trigger: GAAGGATGAAATTGTGGCTCATTTGAGAGGCCCAGA...CAGTAGAGTAGTGGTCACAAAGCAGACAGAGCCTTTCTGTCTACCCGACCCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR TCA 90 bp | CGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTCTGCTTTGTGACCACTACTCTATCTGGGCCTCTCAAATaGGCCACAATTTCATCCTTC | + |
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Preference number: 4 (lower is better) Translates to: RKGSGRQKGSVCFVTTTLSGPLK*ATISSF Trigger: GAAGGATGAAATTGTGGCTCATTTGAGAGGCCCAGA...TAGAGTAGTGGTCACAAAGCAGACAGAGCCTTTCTGTCTACCCGACCCCTTTCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR TCA 90 bp | ACCGTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTCTTGGAGAAAGGAATCTTaGCTTCCTGCCAGTAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: TVLSKYYERGRVDRKALSWRKES*LPASRV Trigger: GACCCTACTGGCAGGAAGTCAAGATTCCTTTCTCCA...AGACAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGACGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR TCA 90 bp | CTTACCGTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTGGAGAAAGGAATCTTaGCTTCCTGCCAGTAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: LTVLSKYYERGRVDRKALWRKES*LPASRV Trigger: GACCCTACTGGCAGGAAGTCAAGATTCCTTTCTCCA...CAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGACGGTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CCA 90 bp | GTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTCTGCTTCAGTCTTTCCCTGCTaGGAGGCTCTGTCAACAGAA | + |
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Preference number: 4 (lower is better) Translates to: VLSKYYERGRVDRKALSASVFPC*EALSTE Trigger: TTCTGTTGACAGAGCCTCCCAGCAGGGAAAGACTGA...AGCAGACAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CCA 90 bp | GTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTCTGCTTTGTGACCACTGAATCCTGGAGATCATaGCACAGTATCCACTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: VLRKGSGRQKGSVCFVTTESWRS*HSIHFV Trigger: GACAAAGTGGATACTGTGCCATGATCTCCAGGATTC...AGTGGTCACAAAGCAGACAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAGTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR TCA 90 bp | GTACTTACCGTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTTGGAGAAAGGAATCTTaGCTTCCTGCCAGTAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: VLTVLSKYYERGRVDRKAWRKES*LPASRV Trigger: GACCCTACTGGCAGGAAGTCAAGATTCCTTTCTCCA...AGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGACGGTAAGTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CCA 90 bp | GTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTCTGCTGAATCCTGGAGATCATaGCACAGTATCCACTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: VLSKYYERGRVDRKALSAESWRS*HSIHFV Trigger: GACAAAGTGGATACTGTGCCATGATCTCCAGGATTC...AGCAGACAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR GCA 90 bp | TCATCTTTATGTAAGCACTCAGAAGAACTTCCACTGAGAGGCCATGCTGTACTTTCTTCAGTCTTTCCCTaGTGGGAGGCTCTGTCAACA | + |
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Preference number: 4 (lower is better) Translates to: SSLCKHSEELPLRGHAVLSSVFP*WEALST Trigger: TGTTGACAGAGCCTCCCAGCAGGGAAAGACTGAAGA...AAGTACAGCATGGCCTCTCAGTGGAAGTTCTTCTGAGTGCTTACATAAAGATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR GCA 90 bp | GATTCATCTTTATGTAAGCACTCAGAAGAACTTCCACTGAGAGGCCATGCTGTATCTTCAGTCTTTCCCTaGTGGGAGGCTCTGTCAACA | + |
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Preference number: 4 (lower is better) Translates to: DSSLCKHSEELPLRGHAVSSVFP*WEALST Trigger: TGTTGACAGAGCCTCCCAGCAGGGAAAGACTGAAGA...TACAGCATGGCCTCTCAGTGGAAGTTCTTCTGAGTGCTTACATAAAGATGAATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR GCA 90 bp | TCGGGTAGACAGAAAGGCTCTGTCTGCTTTGTGACCACTACTCTACTGACGTCCATAAACTCCGTGTCTTaGCTGATATTTACCATCCAA | + |
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Preference number: 4 (lower is better) Translates to: SGRQKGSVCFVTTTLLTSINSVS*LIFTIQ Trigger: TTGGATGGTAAATATCAGGCAAGACACGGAGTTTAT...GGACGTCAGTAGAGTAGTGGTCACAAAGCAGACAGAGCCTTTCTGTCTACCCGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CCA 90 bp | GTACTTACCGTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTGAATCCTGGAGATCATaGCACAGTATCCACTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: VLTVLSKYYERGRVDRKAESWRS*HSIHFV Trigger: GACAAAGTGGATACTGTGCCATGATCTCCAGGATTC...AGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGACGGTAAGTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR TCA 90 bp | GATTCATCTTTATGTAAGCACTCAGAAGAACTTCCACTGAGAGGCCATGCTGTATCTGGGCCTCTCAAATaGGCCACAATTTCATCCTTC | + |
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Preference number: 4 (lower is better) Translates to: DSSLCKHSEELPLRGHAVSGPLK*ATISSF Trigger: GAAGGATGAAATTGTGGCTCATTTGAGAGGCCCAGA...TACAGCATGGCCTCTCAGTGGAAGTTCTTCTGAGTGCTTACATAAAGATGAATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CCA 90 bp | CTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTCTGCTTTGTGACCACTACTTTTTCTGAAGACTACTaGAAGAATAGTCTACACAGT | + |
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Preference number: 4 (lower is better) Translates to: LRKGSGRQKGSVCFVTTTFSEDY*KNSLHS Trigger: ACTGTGTAGACTATTCTTCCAGTAGTCTTCAGAAAA...AGTAGTGGTCACAAAGCAGACAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CCA 90 bp | GTACTTACCGTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTTTCTTCTGTATGGGCTaGATCAGTAAACACACCAAT | + |
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Preference number: 4 (lower is better) Translates to: VLTVLSKYYERGRVDRKAFFCMG*ISKHTN Trigger: ATTGGTGTGTTTACTGATCCAGCCCATACAGAAGAA...AGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGACGGTAAGTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CCA 90 bp | ACCGTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTCTTTTTCTGAAGACTACTaGAAGAATAGTCTACACAGT | + |
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Preference number: 4 (lower is better) Translates to: TVLSKYYERGRVDRKALSFSEDY*KNSLHS Trigger: ACTGTGTAGACTATTCTTCCAGTAGTCTTCAGAAAA...AGACAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGACGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CCA 90 bp | CTTACCGTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTTTTCTGAAGACTACTaGAAGAATAGTCTACACAGT | + |
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Preference number: 4 (lower is better) Translates to: LTVLSKYYERGRVDRKALFSEDY*KNSLHS Trigger: ACTGTGTAGACTATTCTTCCAGTAGTCTTCAGAAAA...CAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGACGGTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CCA 90 bp | GATTCATCTTTATGTAAGCACTCAGAAGAACTTCCACTGAGAGGCCATGCTGTATTCTTCTGTATGGGCTaGATCAGTAAACACACCAAT | + |
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Preference number: 4 (lower is better) Translates to: DSSLCKHSEELPLRGHAVFFCMG*ISKHTN Trigger: ATTGGTGTGTTTACTGATCCAGCCCATACAGAAGAA...TACAGCATGGCCTCTCAGTGGAAGTTCTTCTGAGTGCTTACATAAAGATGAATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CCA 90 bp | TCATCTTTATGTAAGCACTCAGAAGAACTTCCACTGAGAGGCCATGCTGTACTTTTCTTCTGTATGGGCTaGATCAGTAAACACACCAAT | + |
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Preference number: 4 (lower is better) Translates to: SSLCKHSEELPLRGHAVLFFCMG*ISKHTN Trigger: ATTGGTGTGTTTACTGATCCAGCCCATACAGAAGAA...AAGTACAGCATGGCCTCTCAGTGGAAGTTCTTCTGAGTGCTTACATAAAGATGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR GCA 90 bp | TCATCTTTATGTAAGCACTCAGAAGAACTTCCACTGAGAGGCCATGCTGTACTTATAAACTCCGTGTCTTaGCTGATATTTACCATCCAA | + |
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Preference number: 4 (lower is better) Translates to: SSLCKHSEELPLRGHAVLINSVS*LIFTIQ Trigger: TTGGATGGTAAATATCAGGCAAGACACGGAGTTTAT...AAGTACAGCATGGCCTCTCAGTGGAAGTTCTTCTGAGTGCTTACATAAAGATGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CAA 90 bp | CTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTCTGCTTTGTGACCACTACTGAGGTAATGCAGCCCTaGGCCTCAGGAAATTTTTAT | + |
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Preference number: 5 (lower is better) Translates to: LRKGSGRQKGSVCFVTTTEVMQP*ASGNFY Trigger: ATAAAAATTTCCTGAGGCCAAGGGCTGCATTACCTC...AGTAGTGGTCACAAAGCAGACAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CAA 90 bp | CTTACCGTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGAGCAGGGCACTTCGGTaGTTCTTGCTCATTTTCAAG | + |
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Preference number: 5 (lower is better) Translates to: LTVLSKYYERGRVDRKALSRALR*FLLIFK Trigger: CTTGAAAATGAGCAAGAACAACCGAAGTGCCCTGCT...CAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGACGGTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CAA 90 bp | ACCGTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTCTAGCAGGGCACTTCGGTaGTTCTTGCTCATTTTCAAG | + |
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Preference number: 5 (lower is better) Translates to: TVLSKYYERGRVDRKALSSRALR*FLLIFK Trigger: CTTGAAAATGAGCAAGAACAACCGAAGTGCCCTGCT...AGACAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGACGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CAA 90 bp | ACCGTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTCTCCTATAGAAGAGATCTaGTCCAATACGAGTGGGCCT | + |
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Preference number: 5 (lower is better) Translates to: TVLSKYYERGRVDRKALSPIEEI*SNTSGP Trigger: AGGCCCACTCGTATTGGACAAGATCTCTTCTATAGG...AGACAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGACGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CAA 90 bp | CTTACCGTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGCCTATAGAAGAGATCTaGTCCAATACGAGTGGGCCT | + |
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Preference number: 5 (lower is better) Translates to: LTVLSKYYERGRVDRKALPIEEI*SNTSGP Trigger: AGGCCCACTCGTATTGGACAAGATCTCTTCTATAGG...CAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGACGGTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CAA 90 bp | CTTACCGTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGGAGGTAATGCAGCCCTaGGCCTCAGGAAATTTTTAT | + |
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Preference number: 5 (lower is better) Translates to: LTVLSKYYERGRVDRKALEVMQP*ASGNFY Trigger: ATAAAAATTTCCTGAGGCCAAGGGCTGCATTACCTC...CAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGACGGTAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CAA 90 bp | GTACTTACCGTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTCCTATAGAAGAGATCTaGTCCAATACGAGTGGGCCT | + |
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Preference number: 5 (lower is better) Translates to: VLTVLSKYYERGRVDRKAPIEEI*SNTSGP Trigger: AGGCCCACTCGTATTGGACAAGATCTCTTCTATAGG...AGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGACGGTAAGTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CAA 90 bp | AAGGGGTCGGGTAGACAGAAAGGCTCTGTCTGCTTTGTGACCACTACTCTACTGGCACTTCGGTTGTTCTaGCTCATTTTCAAGAATATT | + |
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Preference number: 5 (lower is better) Translates to: KGSGRQKGSVCFVTTTLLALRLF*LIFKNI Trigger: AATATTCTTGAAAATGAGCAAGAACAACCGAAGTGC...CAGTAGAGTAGTGGTCACAAAGCAGACAGAGCCTTTCTGTCTACCCGACCCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CAA 90 bp | TCGGGTAGACAGAAAGGCTCTGTCTGCTTTGTGACCACTACTCTACTGACGTCCGCACTTCGGTTGTTCTaGCTCATTTTCAAGAATATT | + |
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Preference number: 5 (lower is better) Translates to: SGRQKGSVCFVTTTLLTSALRLF*LIFKNI Trigger: AATATTCTTGAAAATGAGCAAGAACAACCGAAGTGC...GGACGTCAGTAGAGTAGTGGTCACAAAGCAGACAGAGCCTTTCTGTCTACCCGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CAA 90 bp | TCATCTTTATGTAAGCACTCAGAAGAACTTCCACTGAGAGGCCATGCTGTACTTAGCAGGGCACTTCGGTaGTTCTTGCTCATTTTCAAG | + |
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Preference number: 5 (lower is better) Translates to: SSLCKHSEELPLRGHAVLSRALR*FLLIFK Trigger: CTTGAAAATGAGCAAGAACAACCGAAGTGCCCTGCT...AAGTACAGCATGGCCTCTCAGTGGAAGTTCTTCTGAGTGCTTACATAAAGATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS-3UTR CAA 90 bp | ACCGTCTTAAGTAAGTACTACGAAAGGGGTCGGGTAGACAGAAAGGCTCTGTCTGCACTTCGGTTGTTCTaGCTCATTTTCAAGAATATT | + |
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Preference number: 5 (lower is better) Translates to: TVLSKYYERGRVDRKALSALRLF*LIFKNI Trigger: AATATTCTTGAAAATGAGCAAGAACAACCGAAGTGC...AGACAGAGCCTTTCTGTCTACCCGACCCCTTTCGTAGTACTTACTTAAGACGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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| CDS CAA 72 bp | CACAGTGACTACCCACAAATGGAGGTAATGCAGCCCTaGGCCTCAGGAAATTTTTATGAATGTAAATGCCAG | + |
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Preference number: 6 (lower is better) Translates to: HSDYPQMEVMQP*ASGNFYECKCQ Trigger: CTGGCATTTACATTCATAAAAATTTCCTGAGGCCAAGGGCTGCATTACCTCCATTTGTGGGTAGTCACTGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028768.2 ENSMUST00000110801.8 ENSMUST00000110802.8 |
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