Pregenerated sensors for NDUFAB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030869Ensembl transcript IDs: ENSMUST00000033157.10, ENSMUST00000106471.9, ENSMUST00000123296.8, ENSMUST00000139456.2
Found 109 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAACAGAGCCGCTGTCAGTCGGCCACGATGCCATCGTGTGTCCTCTaGAGTCCTCACAGTGAGGAAGAAGGCTCTGGCAATGACAAGAGA | + |
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Preference number: 1 (lower is better) Translates to: EQSRCQSATMPSCVL*SPHSEEEGSGNDKR Trigger: TCTCTTGTCATTGCCAGAGCCTTCTTCCTCACTGTGAGGACTCCAGAGGACACACGATGGCATCGTGGCCGACTGACAGCGGCTCTGTTC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106471.9 |
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| 3UTR TCA 90 bp | GAGCTTTCCAGCTCCATGGTTACGAGGTACCGTCTCTCTGGTCTTTaGTTTCCAACAGTCATGCTGCCTTTCCCGGAACAGCAGTGTGGG | + |
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Preference number: 1 (lower is better) Translates to: ELSSSMVTRYRLSGL*FPTVMLPFPEQQCG Trigger: CCCACACTGCTGTTCCGGGAAAGGCAGCATGACTGTTGGAAATCAAAGACCAGAGAGACGGTACCTCGTAACCATGGAGCTGGAAAGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR GCA 90 bp | AGAAATCTGCCTGCCTCAGTCCCCCGAGTGCTAGGATTAAAGGGATaGCCCACCACTGCCCAGCTCCATCCATTACTTTATCCTAATCGC | + |
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Preference number: 1 (lower is better) Translates to: RNLPASVPRVLGLKG*PTTAQLHPLLYPNR Trigger: GCGATTAGGATAAAGTAATGGATGGAGCTGGGCAGTGGTGGGGCATCCCTTTAATCCTAGCACTCGGGGGACTGAGGCAGGCAGATTTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR TCA 90 bp | GTGACTAGGCCAGATGTGTGGGAGAGGAGAGACAAGGTCAAGGCCTaGTGGCAGGCACTACTTAGTGATCTTCAGCAGAAACGATCCACA | + |
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Preference number: 1 (lower is better) Translates to: VTRPDVWERRDKVKA*WQALLSDLQQKRST Trigger: TGTGGATCGTTTCTGCTGAAGATCACTAAGTAGTGCCTGCCATCAGGCCTTGACCTTGTCTCTCCTCTCCCACACATCTGGCCTAGTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR GCA 90 bp | AGGTGTGTGCCACATAGGACAGCCACTTGCATTTGCAGTCACTCCTaGTCCAACTGTGTCCTGCCTTTCCTATGTGGCTTCTATAGAGTT | + |
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Preference number: 1 (lower is better) Translates to: RCVPHRTATCICSHS*SNCVLPFLCGFYRV Trigger: AACTCTATAGAAGCCACATAGGAAAGGCAGGACACAGTTGGAGCAGGAGTGACTGCAAATGCAAGTGGCTGTCCTATGTGGCACACACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR CCA 90 bp | GGAGACTATGAAGAAGCTGAGTTAGAGGGACTGGGAGACAAGGGCTaGAGACAGAGCTATTTCCAGGTCTTTTCAGTGCTGGGCATAGAA | + |
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Preference number: 1 (lower is better) Translates to: GDYEEAELEGLGDKG*RQSYFQVFSVLGIE Trigger: TTCTATGCCCAGCACTGAAAAGACCTGGAAATAGCTCTGTCTCCAGCCCTTGTCTCCCAGTCCCTCTAACTCAGCTTCTTCATAGTCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR GCA 90 bp | GGACAGCCACTTGCATTTGCAGTCACTCCTGCTCCAACTGTGTCCTaGCTTTCCTATGTGGCTTCTATAGAGTTTACAAAAGCCTTCCAG | + |
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Preference number: 1 (lower is better) Translates to: GQPLAFAVTPAPTVS*LSYVASIEFTKAFQ Trigger: CTGGAAGGCTTTTGTAAACTCTATAGAAGCCACATAGGAAAGGCAGGACACAGTTGGAGCAGGAGTGACTGCAAATGCAAGTGGCTGTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR CCA 90 bp | TCACTTGGTAAAGTGAGGAGGCACCACACAGCCTTGATTGAGCCCTaGCTCCAGTGTGGCATTGTTATGCCTTTGCTCATTTTCTTTGTG | + |
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Preference number: 1 (lower is better) Translates to: SLGKVRRHHTALIEP*LQCGIVMPLLIFFV Trigger: CACAAAGAAAATGAGCAAAGGCATAACAATGCCACACTGGAGCCAGGGCTCAATCAAGGCTGTGTGGTGCCTCCTCACTTTACCAAGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR GCA 90 bp | CAACAATATGAACTAACTAGTACCCCCAGAGCTCCTGTCTCTAGCTaGATATGTAGCAGAAGATGGCCTTGTCGGCCATCATTGGGAAGA | + |
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Preference number: 1 (lower is better) Translates to: QQYELTSTPRAPVSS*ICSRRWPCRPSLGR Trigger: TCTTCCCAATGATGGCCGACAAGGCCATCTTCTGCTACATATGCAGCTAGAGACAGGAGCTCTGGGGGTACTAGTTAGTTCATATTGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
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| 3UTR GCA 90 bp | TATTTCCAGGTCTTTTCAGTGCTGGGCATAGAACCTAGGGCCTCATaGATTCTGAGCAAATGTTCAATCACAGAGCTCTATCTCCAGCCA | + |
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Preference number: 1 (lower is better) Translates to: YFQVFSVLGIEPRAS*ILSKCSITELYLQP Trigger: TGGCTGGAGATAGAGCTCTGTGATTGAACATTTGCTCAGAATGCATGAGGCCCTAGGTTCTATGCCCAGCACTGAAAAGACCTGGAAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR GCA 90 bp | GGCTCCAGTGTGGCATTGTTATGCCTTTGCTCATTTTCTTTGTGTTaGCTCCTTGGGTATCTCACAAATCCCTCAAATCATGATGTCTCA | + |
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Preference number: 1 (lower is better) Translates to: GSSVALLCLCSFSLC*LLGYLTNPSNHDVS Trigger: TGAGACATCATGATTTGAGGGATTTGTGAGATACCCAAGGAGGCAACACAAAGAAAATGAGCAAAGGCATAACAATGCCACACTGGAGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR GCA 90 bp | TTCTGTTCTCTGATTTGTAGTGTGGACTGCTCTATGTGGTCAGTTTaGTGCCTATCAGAGCTCAAAATCCTTATTGAAACCATCCCTGTG | + |
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Preference number: 1 (lower is better) Translates to: FCSLICSVDCSMWSV*CLSELKILIETIPV Trigger: CACAGGGATGGTTTCAATAAGGATTTTGAGCTCTGATAGGCAGCAAACTGACCACATAGAGCAGTCCACACTACAAATCAGAGAACAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR TCA 90 bp | AACAATGCAAGCAGGCACTTAGCATCAACCCCTGTCTTTGACACGTaGACATGCACACAGAACTTACACATCAACTCTATGTATTCTGTT | + |
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Preference number: 1 (lower is better) Translates to: NNASRHLASTPVFDT*TCTQNLHINSMYSV Trigger: AACAGAATACATAGAGTTGATGTGTAAGTTCTGTGTGCATGTTCACGTGTCAAAGACAGGGGTTGATGCTAAGTGCCTGCTTGCATTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR GCA 90 bp | TGTTCTCTGATTTGTAGTGTGGACTGCTCTATGTGGTCAGTTTGCTaGCTATCAGAGCTCAAAATCCTTATTGAAACCATCCCTGTGAAT | + |
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Preference number: 1 (lower is better) Translates to: CSLICSVDCSMWSVC*LSELKILIETIPVN Trigger: ATTCACAGGGATGGTTTCAATAAGGATTTTGAGCTCTGATAGGCAGCAAACTGACCACATAGAGCAGTCCACACTACAAATCAGAGAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR TCA 90 bp | AAATCTGACCTTTTTATTCCTGGTTTCAGATGCAGCACAGCTCTGTaGATAGCTGAGATCAAGTTAGTTACTCAGAGAAGCCTCTATCCA | + |
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Preference number: 1 (lower is better) Translates to: KSDLFIPGFRCSTAL*IAEIKLVTQRSLYP Trigger: TGGATAGAGGCTTCTCTGAGTAACTAACTTGATCTCAGCTATTCACAGAGCTGTGCTGCATCTGAAACCAGGAATAAAAAGGTCAGATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR GCA 90 bp | ACACATCAACTCTATGTATTCTGTTCTCTGATTTGTAGTGTGGACTaGTCTATGTGGTCAGTTTGCTGCCTATCAGAGCTCAAAATCCTT | + |
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Preference number: 1 (lower is better) Translates to: THQLYVFCSLICSVD*SMWSVCCLSELKIL Trigger: AAGGATTTTGAGCTCTGATAGGCAGCAAACTGACCACATAGAGCAGTCCACACTACAAATCAGAGAACAGAATACATAGAGTTGATGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR CCA 90 bp | CTCTATGTATTCTGTTCTCTGATTTGTAGTGTGGACTGCTCTATGTaGTCAGTTTGCTGCCTATCAGAGCTCAAAATCCTTATTGAAACC | + |
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Preference number: 1 (lower is better) Translates to: LYVFCSLICSVDCSM*SVCCLSELKILIET Trigger: GGTTTCAATAAGGATTTTGAGCTCTGATAGGCAGCAAACTGACCACATAGAGCAGTCCACACTACAAATCAGAGAACAGAATACATAGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR CCA 90 bp | TGTCATTGCCTTTTATTGTTCTCCCCAGCTGCCCATCACATGCCCTaGGAGGTATTTCTGATATACATGGTTATCAATAACAGATCTTTA | + |
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Preference number: 1 (lower is better) Translates to: CHCLLLFSPAAHHMP*EVFLIYMVINNRSL Trigger: TAAAGATCTGTTATTGATAACCATGTATATCAGAAATACCTCCCAGGGCATGTGATGGGCAGCTGGGGAGAACAATAAAAGGCAATGACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
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| 3UTR-3UTR TCA 90 bp | CTGCCTGCCTCAGTCCCCCGAGTGCTAGGATTAAAGGGATGCCCCACCACTGCCAGCCACAAGGGCTCATaGGAGTCACCCAGGGCACAA | + |
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Preference number: 2 (lower is better) Translates to: LPASVPRVLGLKGCPTTASHKGS*ESPRAQ Trigger: TTGTGCCCTGGGTGACTCTCATGAGCCCTTGTGGCT...GGCAGTGGTGGGGCATCCCTTTAATCCTAGCACTCGGGGGACTGAGGCAGGCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR GCA 90 bp | ATTGAGCCCTGGCTCCAGTGTGGCATTGTTATGCCTTTGCTCATTTTCTTTGTGTTCCCCTGGCCCTCCTaGGGGGCGCGGTTAGGACTG | + |
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Preference number: 2 (lower is better) Translates to: IEPWLQCGIVMPLLIFFVFPWPS*GARLGL Trigger: CAGTCCTAACCGCGCCCCGCAGGAGGGCCAGGGGAA...CACAAAGAAAATGAGCAAAGGCATAACAATGCCACACTGGAGCCAGGGCTCAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR CCA 90 bp | TCTCTAGCTGCATATGTAGCAGAAGATGGCCTTGTCGGCCATCATTGGGAAGAGGCCAGGGCCAAGAAGTaGGAGTGGGTGGGTAGGGGA | + |
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Preference number: 2 (lower is better) Translates to: SLAAYVAEDGLVGHHWEEARAKK*EWVGRG Trigger: TCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGC...CTCTTCCCAATGATGGCCGACAAGGCCATCTTCTGCTACATATGCAGCTAGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
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| 3UTR-3UTR GCA 90 bp | CTGCCTGCCTCAGTCCCCCGAGTGCTAGGATTAAAGGGATGCCCCACCACTGCCATCCACATGCATTTTTaGGCCAATTCTTCAGCTACC | + |
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Preference number: 2 (lower is better) Translates to: LPASVPRVLGLKGCPTTAIHMHF*ANSSAT Trigger: GGTAGCTGAAGAATTGGCGCAAAAATGCATGTGGAT...GGCAGTGGTGGGGCATCCCTTTAATCCTAGCACTCGGGGGACTGAGGCAGGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR CCA 90 bp | AGCAGAAGATGGCCTTGTCGGCCATCATTGGGAAGAGAGGCCCCTTTGTCTTGCCCATCGTGTGTCCTCTaGAGTCCTCACAGTGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: SRRWPCRPSLGREAPLSCPSCVL*SPHSEE Trigger: TTCCTCACTGTGAGGACTCCAGAGGACACACGATGG...GCAAGACAAAGGGGCCTCTCTTCCCAATGATGGCCGACAAGGCCATCTTCTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
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| 3UTR CAA 90 bp | GGTCAGCCTTACTCACTTGGTAAAGTGAGGAGGCACCACACAGCCTaGATTGAGCCCTGGCTCCAGTGTGGCATTGTTATGCCTTTGCTC | + |
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Preference number: 2 (lower is better) Translates to: GQPYSLGKVRRHHTA*IEPWLQCGIVMPLL Trigger: GAGCAAAGGCATAACAATGCCACACTGGAGCCAGGGCTCAATCAAGGCTGTGTGGTGCCTCCTCACTTTACCAAGTGAGTAAGGCTGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR CAA 90 bp | AGCAGAAGATGGCCTTGTCGGCCATCATTGGGAAGAGAGGCCCCTTaGTCTTGCAAACTTTATATGCCGCAGTACAGGGGAATGCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: SRRWPCRPSLGREAP*SCKLYMPQYRGMPG Trigger: CCCTGGCATTCCCCTGTACTGCGGCATATAAAGTTTGCAAGACAAAGGGGCCTCTCTTCCCAATGATGGCCGACAAGGCCATCTTCTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
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| 3UTR-3UTR GCA 90 bp | TTGCCTTTTATTGTTCTCCCCAGCTGCCCATCACATGCCCTGGGAGGTATTTCTCGCAGTACAGGGGAATaGCAGGGCCAAGAAGTGGGA | + |
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Preference number: 2 (lower is better) Translates to: LPFIVLPSCPSHALGGISRSTGE*QGQEVG Trigger: TCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGCG...AGAAATACCTCCCAGGGCATGTGATGGGCAGCTGGGGAGAACAATAAAAGGCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
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| 3UTR-3UTR GCA 90 bp | GGATGCCCCACCACTGCCCAGCTCCATCCATTACTTTATCCTAATCGCCAAACCACAGCCACTTGCATTTaGAGTCACTCCTGCTCCAAC | + |
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Preference number: 2 (lower is better) Translates to: GCPTTAQLHPLLYPNRQTTATCI*SHSCSN Trigger: GTTGGAGCAGGAGTGACTGCAAATGCAAGTGGCTGT...GGTTTGGCGATTAGGATAAAGTAATGGATGGAGCTGGGCAGTGGTGGGGCATCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR CCA 90 bp | GATCAAGTTAGTTACTCAGAGAAGCCTCTATCCACTACTGGTGTTTGTTTGTTTCTCGAAAGGTTCCCCTaGCCCTCCTGCGGGGCGCGG | + |
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Preference number: 2 (lower is better) Translates to: DQVSYSEKPLSTTGVCLFLERFP*PSCGAR Trigger: CCGCGCCCCGCAGGAGGGCCAGGGGAACCTTTCGAG...AAACAAACAAACACCAGTAGTGGATAGAGGCTTCTCTGAGTAACTAACTTGATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR CCA 90 bp | TCTTCAACTGCAGGTGACCTTCTAGGCTGTGCACTCCTGAAACCAGAGGCTGATCCCGGAACAGCAGTGTaGGTTTCACTTCTGTACTCT | + |
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Preference number: 2 (lower is better) Translates to: SSTAGDLLGCALLKPEADPGTAV*VSLLYS Trigger: AGAGTACAGAAGTGAAACCCACACTGCTGTTCCGGG...ATCAGCCTCTGGTTTCAGGAGTGCACAGCCTAGAAGGTCACCTGCAGTTGAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR TCA 90 bp | TTTCCAACAGTCATGCTGCCTTTCCCGGAACAGCAGTGTGGGTTTCACTTCTGTAAATGTGTAAGCCAGTaGGCTGGAGACGCATCCAGA | + |
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Preference number: 2 (lower is better) Translates to: FPTVMLPFPEQQCGFHFCKCVSQ*AGDASR Trigger: TCTGGATGCGTCTCCAGCTCACTGGCTTACACATTT...ACAGAAGTGAAACCCACACTGCTGTTCCGGGAAAGGCAGCATGACTGTTGGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR GCA 90 bp | GACCTTCTAGGCTGTGCACTCCTGAAACCAGAGGCTGATCTCCCACTTGTTTTTGATTTCCAACAGTCATaGTGCCTTTCCCGGAACAGC | + |
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Preference number: 2 (lower is better) Translates to: DLLGCALLKPEADLPLVFDFQQS*CLSRNS Trigger: GCTGTTCCGGGAAAGGCAGCATGACTGTTGGAAATC...AAAAACAAGTGGGAGATCAGCCTCTGGTTTCAGGAGTGCACAGCCTAGAAGGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR GCA 90 bp | GACCTTCTAGGCTGTGCACTCCTGAAACCAGAGGCTGATCTCCCACTTGTTTTTATTTGCAGTCACTCCTaGTCCAACTGTGTCCTGCCT | + |
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Preference number: 2 (lower is better) Translates to: DLLGCALLKPEADLPLVFICSHS*SNCVLP Trigger: AGGCAGGACACAGTTGGAGCAGGAGTGACTGCAAAT...AAAAACAAGTGGGAGATCAGCCTCTGGTTTCAGGAGTGCACAGCCTAGAAGGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR CCA 90 bp | GGATGCCCCACCACTGCCCAGCTCCATCCATTACTTTATCCTAATCGCCAAACCACCCTGGTGTCTACATaGCTCTGTCCTCTAGAAAAT | + |
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Preference number: 2 (lower is better) Translates to: GCPTTAQLHPLLYPNRQTTLVST*LCPLEN Trigger: ATTTTCTAGAGGACAGAGCCATGTAGACACCAGGGT...GGTTTGGCGATTAGGATAAAGTAATGGATGGAGCTGGGCAGTGGTGGGGCATCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR CCA 90 bp | CTGTCATTGCCTTTTATTGTTCTCCCCAGCTGCCCATCACATGCCCTGGGAGGTAAGGAGACAAATACATaGCATGTCCCTGTCACGTGT | + |
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Preference number: 2 (lower is better) Translates to: LSLPFIVLPSCPSHALGGKETNT*HVPVTC Trigger: ACACGTGACAGGGACATGCCATGTATTTGTCTCCTT...ACCTCCCAGGGCATGTGATGGGCAGCTGGGGAGAACAATAAAAGGCAATGACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
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| 3UTR-3UTR TCA 90 bp | GACCTTCTAGGCTGTGCACTCCTGAAACCAGAGGCTGATCTCCCACTTGTTTTTGGCCCTAGTTCACTTTaGACTTGTCAGGTAGTTGAG | + |
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Preference number: 2 (lower is better) Translates to: DLLGCALLKPEADLPLVFGPSSL*TCQVVE Trigger: CTCAACTACCTGACAAGTTCAAAGTGAACTAGGGCC...AAAAACAAGTGGGAGATCAGCCTCTGGTTTCAGGAGTGCACAGCCTAGAAGGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR TCA 90 bp | GGATGCCCCACCACTGCCCAGCTCCATCCATTACTTTATCCTAATCGCCAAACCTCTATATTTTATTTCTaGGACAGGGTCTCATGGCCC | + |
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Preference number: 2 (lower is better) Translates to: GCPTTAQLHPLLYPNRQTSIFYF*DRVSWP Trigger: GGGCCATGAGACCCTGTCTCAGAAATAAAATATAGA...GGTTTGGCGATTAGGATAAAGTAATGGATGGAGCTGGGCAGTGGTGGGGCATCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR GCA 90 bp | GGATGCCCCACCACTGCCCAGCTCCATCCATTACTTTATCCTAATCGCCAAACCATGTGGTCAGTTTGCTaGCTATCAGAGCTCAAAATC | + |
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Preference number: 2 (lower is better) Translates to: GCPTTAQLHPLLYPNRQTMWSVC*LSELKI Trigger: GATTTTGAGCTCTGATAGGCAGCAAACTGACCACAT...GGTTTGGCGATTAGGATAAAGTAATGGATGGAGCTGGGCAGTGGTGGGGCATCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR GCA 90 bp | TCCCCAGCTGCCCATCACATGCCCTGGGAGGTATTTCTGATATACATGGTTATCGAGGCCCCTTTGTCTTaGAAACTTTATATGCCGCAG | + |
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Preference number: 2 (lower is better) Translates to: SPAAHHMPWEVFLIYMVIEAPLS*KLYMPQ Trigger: CTGCGGCATATAAAGTTTGCAAGACAAAGGGGCCTC...GATAACCATGTATATCAGAAATACCTCCCAGGGCATGTGATGGGCAGCTGGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
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| 3UTR-3UTR GCA 90 bp | TCCCCAGCTGCCCATCACATGCCCTGGGAGGTATTTCTGATATACATGGTTATCGCTCCTGTCTCTAGCTaGATATGTAGCAGAAGATGG | + |
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Preference number: 2 (lower is better) Translates to: SPAAHHMPWEVFLIYMVIAPVSS*ICSRRW Trigger: CCATCTTCTGCTACATATGCAGCTAGAGACAGGAGC...GATAACCATGTATATCAGAAATACCTCCCAGGGCATGTGATGGGCAGCTGGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
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| 3UTR-3UTR CCA 90 bp | TTTCCAACAGTCATGCTGCCTTTCCCGGAACAGCAGTGTGGGTTTCACTTCTGTGTGGACTGCTCTATGTaGTCAGTTTGCTGCCTATCA | + |
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Preference number: 2 (lower is better) Translates to: FPTVMLPFPEQQCGFHFCVDCSM*SVCCLS Trigger: TGATAGGCAGCAAACTGACCACATAGAGCAGTCCAC...ACAGAAGTGAAACCCACACTGCTGTTCCGGGAAAGGCAGCATGACTGTTGGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR TCA 90 bp | GGATGCCCCACCACTGCCCAGCTCCATCCATTACTTTATCCTAATCGCCAAACCATGTATTCTGTTCTCTaGTTTGTAGTGTGGACTGCT | + |
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Preference number: 2 (lower is better) Translates to: GCPTTAQLHPLLYPNRQTMYSVL*FVVWTA Trigger: AGCAGTCCACACTACAAATCAGAGAACAGAATACAT...GGTTTGGCGATTAGGATAAAGTAATGGATGGAGCTGGGCAGTGGTGGGGCATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR TCA 90 bp | TGCATTTGCAGTCACTCCTGCTCCAACTGTGTCCTGCCTTTCCTATGTGGCTTCTCTACTTCATTGTTTTaGGACAAGCTGCACTGTAGC | + |
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Preference number: 2 (lower is better) Translates to: CICSHSCSNCVLPFLCGFSTSLF*DKLHCS Trigger: GCTACAGTGCAGCTTGTCTCAAAACAATGAAGTAGA...GAAGCCACATAGGAAAGGCAGGACACAGTTGGAGCAGGAGTGACTGCAAATGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR CCA 90 bp | GGATGCCCCACCACTGCCCAGCTCCATCCATTACTTTATCCTAATCGCCAAACCATTCCCAAAATAACCTaGAGTAAGTTCCAGTCAGCA | + |
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Preference number: 2 (lower is better) Translates to: GCPTTAQLHPLLYPNRQTIPKIT*SKFQSA Trigger: TGCTGACTGGAACTTACTCCAGGTTATTTTGGGAAT...GGTTTGGCGATTAGGATAAAGTAATGGATGGAGCTGGGCAGTGGTGGGGCATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR CCA 90 bp | GACCTTCTAGGCTGTGCACTCCTGAAACCAGAGGCTGATCTCCCACTTGTTTTTCCTCAGTATGTAAAGTaGAGAACAATGCAAGCAGGC | + |
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Preference number: 2 (lower is better) Translates to: DLLGCALLKPEADLPLVFPQYVK*RTMQAG Trigger: GCCTGCTTGCATTGTTCTCCACTTTACATACTGAGG...AAAAACAAGTGGGAGATCAGCCTCTGGTTTCAGGAGTGCACAGCCTAGAAGGTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR TCA 90 bp | GAGATCAAGTTAGTTACTCAGAGAAGCCTCTATCCACTACTGGTGTTTGTTTGTGCATCCAGAGTGATGTaGCTAGGCCAGATGTGTGGG | + |
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Preference number: 2 (lower is better) Translates to: EIKLVTQRSLYPLLVFVCASRVM*LGQMCG Trigger: CCCACACATCTGGCCTAGTCACATCACTCTGGATGC...ACAAACAAACACCAGTAGTGGATAGAGGCTTCTCTGAGTAACTAACTTGATCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR-3UTR TCA 90 bp | CTAGGCTGTGCACTCCTGAAACCAGAGGCTGATCTCCCACTTGTTTTTATTCTAGGGCCTCATGCATTCTaGGCAAATGTTCAATCACAG | + |
|
Preference number: 2 (lower is better) Translates to: LGCALLKPEADLPLVFILGPHAF*ANVQSQ Trigger: CTGTGATTGAACATTTGCTCAGAATGCATGAGGCCC...TAGAATAAAAACAAGTGGGAGATCAGCCTCTGGTTTCAGGAGTGCACAGCCTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR TCA 90 bp | GACCTTCTAGGCTGTGCACTCCTGAAACCAGAGGCTGATCTCCCACTTGTTTTTGAAAGAATGGTACTGTaGATTCAGAGACTCACCCTA | + |
|
Preference number: 2 (lower is better) Translates to: DLLGCALLKPEADLPLVFERMVL*IQRLTL Trigger: TAGGGTGAGTCTCTGAATTCACAGTACCATTCTTTC...AAAAACAAGTGGGAGATCAGCCTCTGGTTTCAGGAGTGCACAGCCTAGAAGGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR GCA 90 bp | ATTGAGCCCTGGCTCCAGTGTGGCATTGTTATGCCTTTGCTCATTTTCTTTGTGTGTTTTGAGACAAGCTaGACTGTAGCCTCCAGGCTA | + |
|
Preference number: 2 (lower is better) Translates to: IEPWLQCGIVMPLLIFFVCFETS*TVASRL Trigger: TAGCCTGGAGGCTACAGTGCAGCTTGTCTCAAAACA...CACAAAGAAAATGAGCAAAGGCATAACAATGCCACACTGGAGCCAGGGCTCAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR TCA 90 bp | GGGGCGCGGTTAGGACTGTGTGAAGGATATATATATAGTGAGGAGACTATGAAGCCTGTCTTTGACACGTaGACATGCACACAGAACTTA | + |
|
Preference number: 2 (lower is better) Translates to: GARLGLCEGYIYSEETMKPVFDT*TCTQNL Trigger: TAAGTTCTGTGTGCATGTTCACGTGTCAAAGACAGG...CTTCATAGTCTCCTCACTATATATATATCCTTCACACAGTCCTAACCGCGCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR GCA 90 bp | GGGGCGCGGTTAGGACTGTGTGAAGGATATATATATAGTGAGGAGACTATGAAGGAACCTAGGGCCTCATaGATTCTGAGCAAATGTTCA | + |
|
Preference number: 2 (lower is better) Translates to: GARLGLCEGYIYSEETMKEPRAS*ILSKCS Trigger: TGAACATTTGCTCAGAATGCATGAGGCCCTAGGTTC...CTTCATAGTCTCCTCACTATATATATATCCTTCACACAGTCCTAACCGCGCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR TCA 90 bp | GATCAAGTTAGTTACTCAGAGAAGCCTCTATCCACTACTGGTGTTTGTTTGTTTCTCTTCAACTGCAGGTaGCCTTCTAGGCTGTGCACT | + |
|
Preference number: 2 (lower is better) Translates to: DQVSYSEKPLSTTGVCLFLFNCR*PSRLCT Trigger: AGTGCACAGCCTAGAAGGTCACCTGCAGTTGAAGAG...AAACAAACAAACACCAGTAGTGGATAGAGGCTTCTCTGAGTAACTAACTTGATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR CCA 90 bp | GATCAAGTTAGTTACTCAGAGAAGCCTCTATCCACTACTGGTGTTTGTTTGTTTACTAGGCCAGATGTGTaGGAGAGGAGAGACAAGGTC | + |
|
Preference number: 2 (lower is better) Translates to: DQVSYSEKPLSTTGVCLFTRPDV*ERRDKV Trigger: GACCTTGTCTCTCCTCTCCCACACATCTGGCCTAGT...AAACAAACAAACACCAGTAGTGGATAGAGGCTTCTCTGAGTAACTAACTTGATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR TCA 90 bp | GGGGCGCGGTTAGGACTGTGTGAAGGATATATATATAGTGAGGAGACTATGAAGGCTCAAAATCCTTATTaGAACCATCCCTGTGAATTC | + |
|
Preference number: 2 (lower is better) Translates to: GARLGLCEGYIYSEETMKAQNPY*NHPCEF Trigger: GAATTCACAGGGATGGTTTCAATAAGGATTTTGAGC...CTTCATAGTCTCCTCACTATATATATATCCTTCACACAGTCCTAACCGCGCCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR TCA 90 bp | GATCAAGTTAGTTACTCAGAGAAGCCTCTATCCACTACTGGTGTTTGTTTGTTTGGTCCTTTGGTCCACTaGACCATAACCACCTCTTCA | + |
|
Preference number: 2 (lower is better) Translates to: DQVSYSEKPLSTTGVCLFGPLVH*TITTSS Trigger: TGAAGAGGTGGTTATGGTTCAGTGGACCAAAGGACC...AAACAAACAAACACCAGTAGTGGATAGAGGCTTCTCTGAGTAACTAACTTGATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR GCA 90 bp | ATTGAGCCCTGGCTCCAGTGTGGCATTGTTATGCCTTTGCTCATTTTCTTTGTGTCTTGGGACTCAAGGTaGTTGAGATTATATATAGTG | + |
|
Preference number: 2 (lower is better) Translates to: IEPWLQCGIVMPLLIFFVSWDSR*LRLYIV Trigger: CACTATATATAATCTCAAGCACCTTGAGTCCCAAGA...CACAAAGAAAATGAGCAAAGGCATAACAATGCCACACTGGAGCCAGGGCTCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR CAA 90 bp | GTGTGGCATTGTTATGCCTTTGCTCATTTTCTTTGTGTTGCCTCCTaGGGTATCTCACAAATCCCTCAAATCATGATGTCTCAAATGGAA | + |
|
Preference number: 2 (lower is better) Translates to: VWHCYAFAHFLCVAS*GISQIPQIMMSQME Trigger: TTCCATTTGAGACATCATGATTTGAGGGATTTGTGAGATACCCAAGGAGGCAACACAAAGAAAATGAGCAAAGGCATAACAATGCCACAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR TCA 90 bp | GATCAAGTTAGTTACTCAGAGAAGCCTCTATCCACTACTGGTGTTTGTTTGTTTTTGAAACCATCCCTGTaGATTCTTAGAGCAGAGAGG | + |
|
Preference number: 2 (lower is better) Translates to: DQVSYSEKPLSTTGVCLFLKPSL*ILRAER Trigger: CCTCTCTGCTCTAAGAATTCACAGGGATGGTTTCAA...AAACAAACAAACACCAGTAGTGGATAGAGGCTTCTCTGAGTAACTAACTTGATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR TCA 90 bp | GCCCATCACATGCCCTGGGAGGTATTTCTGATATACATGGTTATCAATAACAGAAATTTAAATACAAGTTaGACAGAGCCGCTGTCAGTC | + |
|
Preference number: 2 (lower is better) Translates to: AHHMPWEVFLIYMVINNRNLNTS*TEPLSV Trigger: GACTGACAGCGGCTCTGTTCAACTTGTATTTAAATT...TCTGTTATTGATAACCATGTATATCAGAAATACCTCCCAGGGCATGTGATGGGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
||
| 3UTR-3UTR GCA 90 bp | GATCAAGTTAGTTACTCAGAGAAGCCTCTATCCACTACTGGTGTTTGTTTGTTTCTCTCACTGTCATCTTaGTTACAGGACTGTAGCAAG | + |
|
Preference number: 2 (lower is better) Translates to: DQVSYSEKPLSTTGVCLFLSLSS*LQDCSK Trigger: CTTGCTACAGTCCTGTAAGCAAGATGACAGTGAGAG...AAACAAACAAACACCAGTAGTGGATAGAGGCTTCTCTGAGTAACTAACTTGATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR CCA 72 bp | CGCTGTCAGTCGGCCACGATGCCATCGTGTGTCCTCTaGAGTCCTCACAGTGAGGAAGAAGGCTCTGGCAAT | + |
|
Preference number: 3 (lower is better) Translates to: RCQSATMPSCVL*SPHSEEEGSGN Trigger: ATTGCCAGAGCCTTCTTCCTCACTGTGAGGACTCCAGAGGACACACGATGGCATCGTGGCCGACTGACAGCG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106471.9 |
||
| 3UTR CCA 72 bp | CGCTGTCAGTCGGCCACGATGCCATCGTGTGTCCTCTaGAGTCCTCACAGTGAGGAAGAAGGCTCTGATACT | + |
|
Preference number: 3 (lower is better) Translates to: RCQSATMPSCVL*SPHSEEEGSDT Trigger: AGTATCAGAGCCTTCTTCCTCACTGTGAGGACTCCAGAGGACACACGATGGCATCGTGGCCGACTGACAGCG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
||
| 3UTR GCA 72 bp | CTGTCACAGAAACTCGAAAGGTTCCCCTGGCCCTCCTaGGGGGCGCGGTTAGGACTGTGTGAAGGATATATA | + |
|
Preference number: 3 (lower is better) Translates to: LSQKLERFPWPS*GARLGLCEGYI Trigger: TATATATCCTTCACACAGTCCTAACCGCGCCCCGCAGGAGGGCCAGGGGAACCTTTCGAGTTTCTGTGACAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR GCA 72 bp | CCTGCCTCAGTCCCCCGAGTGCTAGGATTAAAGGGATaGCCCACCACTGCCCAGCTCCATCCATTACTTTAT | + |
|
Preference number: 3 (lower is better) Translates to: PASVPRVLGLKG*PTTAQLHPLLY Trigger: ATAAAGTAATGGATGGAGCTGGGCAGTGGTGGGGCATCCCTTTAATCCTAGCACTCGGGGGACTGAGGCAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR TCA 72 bp | GGTCCACTGAACCATAACCACCTCTTCAACTGCAGGTaGCCTTCTAGGCTGTGCACTCCTGAAACCAGAGGC | + |
|
Preference number: 3 (lower is better) Translates to: GPLNHNHLFNCR*PSRLCTPETRG Trigger: GCCTCTGGTTTCAGGAGTGCACAGCCTAGAAGGTCACCTGCAGTTGAAGAGGTGGTTATGGTTCAGTGGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR GCA 72 bp | CCACATAGGACAGCCACTTGCATTTGCAGTCACTCCTaGTCCAACTGTGTCCTGCCTTTCCTATGTGGCTTC | + |
|
Preference number: 3 (lower is better) Translates to: PHRTATCICSHS*SNCVLPFLCGF Trigger: GAAGCCACATAGGAAAGGCAGGACACAGTTGGAGCAGGAGTGACTGCAAATGCAAGTGGCTGTCCTATGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR TCA 72 bp | CCAGATGTGTGGGAGAGGAGAGACAAGGTCAAGGCCTaGTGGCAGGCACTACTTAGTGATCTTCAGCAGAAA | + |
|
Preference number: 3 (lower is better) Translates to: PDVWERRDKVKA*WQALLSDLQQK Trigger: TTTCTGCTGAAGATCACTAAGTAGTGCCTGCCATCAGGCCTTGACCTTGTCTCTCCTCTCCCACACATCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR TCA 72 bp | AGCTCCATGGTTACGAGGTACCGTCTCTCTGGTCTTTaGTTTCCAACAGTCATGCTGCCTTTCCCGGAACAG | + |
|
Preference number: 3 (lower is better) Translates to: SSMVTRYRLSGL*FPTVMLPFPEQ Trigger: CTGTTCCGGGAAAGGCAGCATGACTGTTGGAAATCAAAGACCAGAGAGACGGTACCTCGTAACCATGGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR GCA 72 bp | TGTCGGCCATCATTGGGAAGAGAGGCCCCTTTGTCTTaGAAACTTTATATGCCGCAGTACAGGGGAATGCCA | + |
|
Preference number: 3 (lower is better) Translates to: CRPSLGREAPLS*KLYMPQYRGMP Trigger: TGGCATTCCCCTGTACTGCGGCATATAAAGTTTGCAAGACAAAGGGGCCTCTCTTCCCAATGATGGCCGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
||
| 3UTR GCA 72 bp | GAACTAACTAGTACCCCCAGAGCTCCTGTCTCTAGCTaGATATGTAGCAGAAGATGGCCTTGTCGGCCATCA | + |
|
Preference number: 3 (lower is better) Translates to: ELTSTPRAPVSS*ICSRRWPCRPS Trigger: TGATGGCCGACAAGGCCATCTTCTGCTACATATGCAGCTAGAGACAGGAGCTCTGGGGGTACTAGTTAGTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
||
| 3UTR GCA 72 bp | TTGAGCCCTGGCTCCAGTGTGGCATTGTTATGCCTTTaGTCATTTTCTTTGTGTTGCCTCCTTGGGTATCTC | + |
|
Preference number: 3 (lower is better) Translates to: LSPGSSVALLCL*SFSLCCLLGYL Trigger: GAGATACCCAAGGAGGCAACACAAAGAAAATGAGCAAAGGCATAACAATGCCACACTGGAGCCAGGGCTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR CAA 90 bp | GGATGCCCCACCACTGCCCAGCTCCATCCATTACTTTATCCTAATCGCCAAACCTGGGACTCAAGGTGCTaGAGATTATATATAGTGATG | + |
|
Preference number: 3 (lower is better) Translates to: GCPTTAQLHPLLYPNRQTWDSRC*RLYIVM Trigger: CATCACTATATATAATCTCAAGCACCTTGAGTCCCA...GGTTTGGCGATTAGGATAAAGTAATGGATGGAGCTGGGCAGTGGTGGGGCATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR CAA 90 bp | CTGTCATTGCCTTTTATTGTTCTCCCCAGCTGCCCATCACATGCCCTGGGAGGTCAATTTAAATACAAGTaGAACAGAGCCGCTGTCAGT | + |
|
Preference number: 3 (lower is better) Translates to: LSLPFIVLPSCPSHALGGQFKYK*NRAAVS Trigger: ACTGACAGCGGCTCTGTTCAACTTGTATTTAAATTG...ACCTCCCAGGGCATGTGATGGGCAGCTGGGGAGAACAATAAAAGGCAATGACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
||
| 3UTR TCA 72 bp | CAATGCAAGCAGGCACTTAGCATCAACCCCTGTCTTTaGCACGTGAACATGCACACAGAACTTACACATCAA | + |
|
Preference number: 3 (lower is better) Translates to: QCKQALSINPCL*HVNMHTELTHQ Trigger: TTGATGTGTAAGTTCTGTGTGCATGTTCACGTGTCAAAGACAGGGGTTGATGCTAAGTGCCTGCTTGCATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR TCA 72 bp | TCCTGGTTTCAGATGCAGCACAGCTCTGTGAATAGCTaGGATCAAGTTAGTTACTCAGAGAAGCCTCTATCC | + |
|
Preference number: 3 (lower is better) Translates to: SWFQMQHSSVNS*DQVSYSEKPLS Trigger: GGATAGAGGCTTCTCTGAGTAACTAACTTGATCTCAGCTATTCACAGAGCTGTGCTGCATCTGAAACCAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR GCA 72 bp | CTCTATGTATTCTGTTCTCTGATTTGTAGTGTGGACTaGTCTATGTGGTCAGTTTGCTGCCTATCAGAGCTC | + |
|
Preference number: 3 (lower is better) Translates to: LYVFCSLICSVD*SMWSVCCLSEL Trigger: GAGCTCTGATAGGCAGCAAACTGACCACATAGAGCAGTCCACACTACAAATCAGAGAACAGAATACATAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR GCA 72 bp | CTTGCATTTGCAGTCACTCCTGCTCCAACTGTGTCCTaGCTTTCCTATGTGGCTTCTATAGAGTTTACAAAA | + |
|
Preference number: 3 (lower is better) Translates to: LAFAVTPAPTVS*LSYVASIEFTK Trigger: TTTTGTAAACTCTATAGAAGCCACATAGGAAAGGCAGGACACAGTTGGAGCAGGAGTGACTGCAAATGCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR CCA 72 bp | CCATTTACAACTTTGGGGAATATTCCCAAAATAACCTaGAGTAAGTTCCAGTCAGCAGCCACATCCATCCTG | + |
|
Preference number: 3 (lower is better) Translates to: PFTTLGNIPKIT*SKFQSAATSIL Trigger: CAGGATGGATGTGGCTGCTGACTGGAACTTACTCCAGGTTATTTTGGGAATATTCCCCAAAGTTGTAAATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR CAA 90 bp | ATTGAGCCCTGGCTCCAGTGTGGCATTGTTATGCCTTTGCTCATTTTCTTTGTGCTAAGAAATTTCACTTaGTCTTTCACATACGGGCAG | + |
|
Preference number: 3 (lower is better) Translates to: IEPWLQCGIVMPLLIFFVLRNFT*SFTYGQ Trigger: CTGCCCGTATGTGAAAGACAAAGTGAAATTTCTTAG...CACAAAGAAAATGAGCAAAGGCATAACAATGCCACACTGGAGCCAGGGCTCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR CAA 90 bp | ATTGAGCCCTGGCTCCAGTGTGGCATTGTTATGCCTTTGCTCATTTTCTTTGTGTTTCAAAGTCAACTGTaGACGTACTTCACTCCTAAC | + |
|
Preference number: 3 (lower is better) Translates to: IEPWLQCGIVMPLLIFFVFQSQL*TYFTPN Trigger: GTTAGGAGTGAAGTACGTCAACAGTTGACTTTGAAA...CACAAAGAAAATGAGCAAAGGCATAACAATGCCACACTGGAGCCAGGGCTCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR TCA 72 bp | GTCAGTTTGCTGCCTATCAGAGCTCAAAATCCTTATTaGAACCATCCCTGTGAATTCTTAGAGCAGAGAGGT | + |
|
Preference number: 3 (lower is better) Translates to: VSLLPIRAQNPY*NHPCEFLEQRG Trigger: ACCTCTCTGCTCTAAGAATTCACAGGGATGGTTTCAATAAGGATTTTGAGCTCTGATAGGCAGCAAACTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR GCA 72 bp | CTGATTTGTAGTGTGGACTGCTCTATGTGGTCAGTTTaGTGCCTATCAGAGCTCAAAATCCTTATTGAAACC | + |
|
Preference number: 3 (lower is better) Translates to: LICSVDCSMWSV*CLSELKILIET Trigger: GGTTTCAATAAGGATTTTGAGCTCTGATAGGCAGCAAACTGACCACATAGAGCAGTCCACACTACAAATCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR CCA 72 bp | TTCTGTTCTCTGATTTGTAGTGTGGACTGCTCTATGTaGTCAGTTTGCTGCCTATCAGAGCTCAAAATCCTT | + |
|
Preference number: 3 (lower is better) Translates to: FCSLICSVDCSM*SVCCLSELKIL Trigger: AAGGATTTTGAGCTCTGATAGGCAGCAAACTGACCACATAGAGCAGTCCACACTACAAATCAGAGAACAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR CCA 72 bp | CTTTTATTGTTCTCCCCAGCTGCCCATCACATGCCCTaGGAGGTATTTCTGATATACATGGTTATCAATAAC | + |
|
Preference number: 3 (lower is better) Translates to: LLLFSPAAHHMP*EVFLIYMVINN Trigger: GTTATTGATAACCATGTATATCAGAAATACCTCCCAGGGCATGTGATGGGCAGCTGGGGAGAACAATAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
||
| 3UTR-3UTR CAA 90 bp | ATTGAGCCCTGGCTCCAGTGTGGCATTGTTATGCCTTTGCTCATTTTCTTTGTGTCTTATTCTGCATATTaGTTTCTGTTCAACCAACCC | + |
|
Preference number: 3 (lower is better) Translates to: IEPWLQCGIVMPLLIFFVSYSAY*FLFNQP Trigger: GGGTTGGTTGAACAGAAACAAATATGCAGAATAAGA...CACAAAGAAAATGAGCAAAGGCATAACAATGCCACACTGGAGCCAGGGCTCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR GCA 72 bp | ATTTGTAGTGTGGACTGCTCTATGTGGTCAGTTTGCTaGCTATCAGAGCTCAAAATCCTTATTGAAACCATC | + |
|
Preference number: 3 (lower is better) Translates to: ICSVDCSMWSVC*LSELKILIETI Trigger: GATGGTTTCAATAAGGATTTTGAGCTCTGATAGGCAGCAAACTGACCACATAGAGCAGTCCACACTACAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR CCA 72 bp | TTGAGATTATATATAGTGATGCACACTTTGGCGCTCTaGCAGACATCCAATTACAAGTCCTTAGTATCGTCC | + |
|
Preference number: 3 (lower is better) Translates to: LRLYIVMHTLAL*QTSNYKSLVSS Trigger: GGACGATACTAAGGACTTGTAATTGGATGTCTGCCAGAGCGCCAAAGTGTGCATCACTATATATAATCTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR-3UTR CAA 90 bp | GAGATCAAGTTAGTTACTCAGAGAAGCCTCTATCCACTACTGGTGTTTGTTTGTGCTTCCTCTCACCTTTaGACAGATTTGACAGTTGAA | + |
|
Preference number: 3 (lower is better) Translates to: EIKLVTQRSLYPLLVFVCASSHL*TDLTVE Trigger: TTCAACTGTCAAATCTGTCAAAAGGTGAGAGGAAGC...ACAAACAAACACCAGTAGTGGATAGAGGCTTCTCTGAGTAACTAACTTGATCTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR TCA 72 bp | TATCAGAGCTCAAAATCCTTATTGAAACCATCCCTGTaGATTCTTAGAGCAGAGAGGTGTTTAGCATTTCAG | + |
|
Preference number: 3 (lower is better) Translates to: YQSSKSLLKPSL*ILRAERCLAFQ Trigger: CTGAAATGCTAAACACCTCTCTGCTCTAAGAATTCACAGGGATGGTTTCAATAAGGATTTTGAGCTCTGATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR TCA 72 bp | CAGAACTTACACATCAACTCTATGTATTCTGTTCTCTaGTTTGTAGTGTGGACTGCTCTATGTGGTCAGTTT | + |
|
Preference number: 3 (lower is better) Translates to: QNLHINSMYSVL*FVVWTALCGQF Trigger: AAACTGACCACATAGAGCAGTCCACACTACAAATCAGAGAACAGAATACATAGAGTTGATGTGTAAGTTCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| CDS-3UTR TCA 90 bp | CCATCGTGTGTCCTCTGGAGTCCTCACAGTGAGGAAGAAGGCTCTGGCAATGACGGCGGCACAAATGTGTaGCTGTTCCAGGCACCTGCG | + |
|
Preference number: 4 (lower is better) Translates to: PSCVLWSPHSEEEGSGNDGGTNV*LFQAPA Trigger: CGCAGGTGCCTGGAACAGTCACACATTTGTGCCGCC...GTCATTGCCAGAGCCTTCTTCCTCACTGTGAGGACTCCAGAGGACACACGATGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106471.9 |
||
| CDS-3UTR TCA 90 bp | TCCCCAGCTGCCCATCACATGCCCTGGGAGGTATTTCTGATATACATGGTTATCGGCGGCACAAATGTGTaGCTGTTCCAGGCACCTGCG | + |
|
Preference number: 4 (lower is better) Translates to: SPAAHHMPWEVFLIYMVIGGTNV*LFQAPA Trigger: CGCAGGTGCCTGGAACAGTCACACATTTGTGCCGCC...GATAACCATGTATATCAGAAATACCTCCCAGGGCATGTGATGGGCAGCTGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
||
| 3UTR CAA 72 bp | TGGCCTTGTCGGCCATCATTGGGAAGAGAGGCCCCTTaGTCTTGCAAACTTTATATGCCGCAGTACAGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: WPCRPSLGREAP*SCKLYMPQYRG Trigger: TCCCCTGTACTGCGGCATATAAAGTTTGCAAGACAAAGGGGCCTCTCTTCCCAATGATGGCCGACAAGGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123296.8 |
||
| 3UTR CAA 72 bp | CAGCTCCATGGTTACGAGGTACCGTCTCTCTGGTCTTaGATTTCCAACAGTCATGCTGCCTTTCCCGGAACA | + |
|
Preference number: 4 (lower is better) Translates to: QLHGYEVPSLWS*ISNSHAAFPGT Trigger: TGTTCCGGGAAAGGCAGCATGACTGTTGGAAATCAAAGACCAGAGAGACGGTACCTCGTAACCATGGAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
||
| 3UTR CAA 72 bp | TACTCACTTGGTAAAGTGAGGAGGCACCACACAGCCTaGATTGAGCCCTGGCTCCAGTGTGGCATTGTTATG | + |
|
Preference number: 4 (lower is better) Translates to: YSLGKVRRHHTA*IEPWLQCGIVM Trigger: CATAACAATGCCACACTGGAGCCAGGGCTCAATCAAGGCTGTGTGGTGCCTCCTCACTTTACCAAGTGAGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| CDS-3UTR TCA 90 bp | GAGATCAAGTTAGTTACTCAGAGAAGCCTCTATCCACTACTGGTGTTTGTTTGTGGCGGCACAAATGTGTaGCTGTTCCAGGCACCTGCG | + |
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Preference number: 4 (lower is better) Translates to: EIKLVTQRSLYPLLVFVCGGTNV*LFQAPA Trigger: CGCAGGTGCCTGGAACAGTCACACATTTGTGCCGCC...ACAAACAAACACCAGTAGTGGATAGAGGCTTCTCTGAGTAACTAACTTGATCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR CAA 72 bp | ATTGAGCCCTGGCTCCAGTGTGGCATTGTTATGCCTTaGCTCATTTTCTTTGTGTTGCCTCCTTGGGTATCT | + |
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Preference number: 4 (lower is better) Translates to: IEPWLQCGIVMP*LIFFVLPPWVS Trigger: AGATACCCAAGGAGGCAACACAAAGAAAATGAGCAAAGGCATAACAATGCCACACTGGAGCCAGGGCTCAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| CDS-3UTR TCA 90 bp | TACAGACAGACTGATCCTATAGAGAAGATAGTTTTATGTCTGATTACTTACCTGGGCGGCACAAATGTGTaGCTGTTCCAGGCACCTGCG | + |
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Preference number: 4 (lower is better) Translates to: YRQTDPIEKIVLCLITYLGGTNV*LFQAPA Trigger: CGCAGGTGCCTGGAACAGTCACACATTTGTGCCGCC...CAGGTAAGTAATCAGACATAAAACTATCTTCTCTATAGGATCAGTCTGTCTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139456.2 |
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| 3UTR CAA 72 bp | CAGCAGCCACATCCATCCTGTGTTTTTCACTCTTGGTaGTCAGTGTGTAGTAAATACTCCAGCTCTTCATGG | + |
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Preference number: 4 (lower is better) Translates to: QQPHPSCVFHSW*SVCSKYSSSSW Trigger: CCATGAAGAGCTGGAGTATTTACTACACACTGACAACCAAGAGTGAAAAACACAGGATGGATGTGGCTGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| CDS-3UTR TCA 90 bp | CTAGGCTGTGCACTCCTGAAACCAGAGGCTGATCTCCCACTTGTTTTTATTCTAAGGTCCTTCATAAAATaGGAATTTACGGAGAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: LGCALLKPEADLPLVFILRSFIK*EFTESF Trigger: AAAGCTCTCCGTAAATTCTCATTTTATGAAGGACCT...TAGAATAAAAACAAGTGGGAGATCAGCCTCTGGTTTCAGGAGTGCACAGCCTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| 3UTR CAA 72 bp | TGTTATGCCTTTGCTCATTTTCTTTGTGTTGCCTCCTaGGGTATCTCACAAATCCCTCAAATCATGATGTCT | + |
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Preference number: 4 (lower is better) Translates to: CYAFAHFLCVAS*GISQIPQIMMS Trigger: AGACATCATGATTTGAGGGATTTGTGAGATACCCAAGGAGGCAACACAAAGAAAATGAGCAAAGGCATAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033157.10 |
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| CDS TCA 90 bp | GAGCCCCGGGTCTCCTCCGGATTCCCTCAGGGCATAGGGTGGTGCTaGGCGGCCGCGCCAAGGCCAACGTGGGAAGCCGGGGCAGCGGCG | + |
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Preference number: 5 (lower is better) Translates to: EPRVSSGFPQGIGWC*AAAPRPTWEAGAAA Trigger: CGCCGCTGCCCCGGCTTCCCACGTTGGCCTTGGCGCGGCCGCTCAGCACCACCCTATGCCCTGAGGGAATCCGGAGGAGACCCGGGGCTC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033157.10 ENSMUST00000123296.8 |
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| CDS GCA 90 bp | GCGTCACTGTACTGGCGGCACAAATGTGTGACTGTTCCAGGCACCTaGGCGAGCGCCAAGGCGGACTGCAGAGCCCCGGGTCTCCTCCGG | + |
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Preference number: 5 (lower is better) Translates to: ASLYWRHKCVTVPGT*ASAKADCRAPGLLR Trigger: CCGGAGGAGACCCGGGGCTCTGCAGTCCGCCTTGGCGCTCGCGCAGGTGCCTGGAACAGTCACACATTTGTGCCGCCAGTACAGTGACGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033157.10 ENSMUST00000106471.9 ENSMUST00000123296.8 ENSMUST00000139456.2 |
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| CDS GCA 90 bp | AAATGTGTGACTGTTCCAGGCACCTGCGCGAGCGCCAAGGCGGACTaGAGAGCCCCGGGTCTCCTCCGGATTCCCTCAGGGCATAGGGTG | + |
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Preference number: 5 (lower is better) Translates to: KCVTVPGTCASAKAD*RAPGLLRIPSGHRV Trigger: CACCCTATGCCCTGAGGGAATCCGGAGGAGACCCGGGGCTCTGCAGTCCGCCTTGGCGCTCGCGCAGGTGCCTGGAACAGTCACACATTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033157.10 ENSMUST00000106471.9 ENSMUST00000123296.8 ENSMUST00000139456.2 |
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| CDS TCA 90 bp | CTAACGTCAGTGGGGGTGCGTCACTGTACTGGCGGCACAAATGTGTaGCTGTTCCAGGCACCTGCGCGAGCGCCAAGGCGGACTGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: LTSVGVRHCTGGTNV*LFQAPARAPRRTAE Trigger: CTCTGCAGTCCGCCTTGGCGCTCGCGCAGGTGCCTGGAACAGTCACACATTTGTGCCGCCAGTACAGTGACGCACCCCCACTGACGTTAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000033157.10 ENSMUST00000106471.9 ENSMUST00000123296.8 ENSMUST00000139456.2 |
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| CDS TCA 90 bp | GATCAATCTTATCATAGAGTTTCAAGACATACAGAACTCGGTCCTTaGTTCCGTCTAACGTCAGTGGGGGTGCGTCACTGTACTGGCGGC | + |
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Preference number: 5 (lower is better) Translates to: DQSYHRVSRHTELGP*FRLTSVGVRHCTGG Trigger: GCCGCCAGTACAGTGACGCACCCCCACTGACGTTAGACGGAATCAAGGACCGAGTTCTGTATGTCTTGAAACTCTATGATAAGATTGATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000033157.10 ENSMUST00000106471.9 ENSMUST00000123296.8 ENSMUST00000139456.2 |
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| CDS GCA 72 bp | ACTGTTCCAGGCACCTGCGCGAGCGCCAAGGCGGACTaGAGAGCCCCGGGTCTCCTCCGGATTCCCTCAGGG | + |
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Preference number: 6 (lower is better) Translates to: TVPGTCASAKAD*RAPGLLRIPSG Trigger: CCCTGAGGGAATCCGGAGGAGACCCGGGGCTCTGCAGTCCGCCTTGGCGCTCGCGCAGGTGCCTGGAACAGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033157.10 ENSMUST00000106471.9 ENSMUST00000123296.8 ENSMUST00000139456.2 |
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| CDS TCA 72 bp | GTGGGGGTGCGTCACTGTACTGGCGGCACAAATGTGTaGCTGTTCCAGGCACCTGCGCGAGCGCCAAGGCGG | + |
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Preference number: 6 (lower is better) Translates to: VGVRHCTGGTNV*LFQAPARAPRR Trigger: CCGCCTTGGCGCTCGCGCAGGTGCCTGGAACAGTCACACATTTGTGCCGCCAGTACAGTGACGCACCCCCAC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000033157.10 ENSMUST00000106471.9 ENSMUST00000123296.8 ENSMUST00000139456.2 |
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| CDS GCA 72 bp | TACTGGCGGCACAAATGTGTGACTGTTCCAGGCACCTaGGCGAGCGCCAAGGCGGACTGCAGAGCCCCGGGT | + |
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Preference number: 6 (lower is better) Translates to: YWRHKCVTVPGT*ASAKADCRAPG Trigger: ACCCGGGGCTCTGCAGTCCGCCTTGGCGCTCGCGCAGGTGCCTGGAACAGTCACACATTTGTGCCGCCAGTA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033157.10 ENSMUST00000106471.9 ENSMUST00000123296.8 ENSMUST00000139456.2 |
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| CDS TCA 72 bp | TATCATAGAGTTTCAAGACATACAGAACTCGGTCCTTaGTTCCGTCTAACGTCAGTGGGGGTGCGTCACTGT | + |
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Preference number: 6 (lower is better) Translates to: YHRVSRHTELGP*FRLTSVGVRHC Trigger: ACAGTGACGCACCCCCACTGACGTTAGACGGAATCAAGGACCGAGTTCTGTATGTCTTGAAACTCTATGATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000033157.10 ENSMUST00000106471.9 ENSMUST00000123296.8 ENSMUST00000139456.2 |
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