Pregenerated sensors for NDUFA9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000399Ensembl transcript IDs: ENSMUST00000088194.7, ENSMUST00000205002.3
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CCTTGGTATAAGAATTCCAAACCCTCTAACATTTCAGAGAACAGTTGTGTGTGTGTCAAGAAAGACACTTaGAATAGACCGAATCCTCGG | + |
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Preference number: 2 (lower is better) Translates to: PWYKNSKPSNISENSCVCVKKDT*NRPNPR Trigger: CCGAGGATTCGGTCTATTGCAAGTGTCTTTCTTGAC...ACACACACAACTGTTCTCTGAAATGTTAGAGGGTTTGGAATTCTTATACCAAGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| 3UTR TCA 72 bp | CTTGCAATAGACCGAATCCTCGGATATTTAATAGAGTaGCTCTTTTACTGCACACAGGTGACCTGGGTGACA | + |
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Preference number: 3 (lower is better) Translates to: LAIDRILGYLIE*LFYCTQVTWVT Trigger: TGTCACCCAGGTCACCTGTGTGCAGTAAAAGAGTCACTCTATTAAATATCCGAGGATTCGGTCTATTGCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| 3UTR TCA 72 bp | CATTTATACCAAATGCTTCTAGATAACCATGCAGCCTaGGATCATAGCAATATTTCCACTTTGAGGATAGGG | + |
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Preference number: 3 (lower is better) Translates to: HLYQMLLDNHAA*DHSNISTLRIG Trigger: CCCTATCCTCAAAGTGGAAATATTGCTATGATCTCAGGCTGCATGGTTATCTAGAAGCATTTGGTATAAATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| CDS-3UTR TCA 90 bp | CCTCGGATATTTAATAGAGTGACTCTTTTACTGCACACAGGTGACCTGGGTGACTGGTATGATCACTTGTaGCCCCATTCGTCCAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: PRIFNRVTLLLHTGDLGDWYDHL*PHSSKV Trigger: CACCTTGGACGAATGGGGTCACAAGTGATCATACCA...GTCACCCAGGTCACCTGTGTGCAGTAAAAGAGTCACTCTATTAAATATCCGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| CDS-3UTR GCA 90 bp | CCTCGGATATTTAATAGAGTGACTCTTTTACTGCACACAGGTGACCTGGGTGACCCCCTTGGAAACATCTaGAACATACACCGGCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: PRIFNRVTLLLHTGDLGDPLGNI*NIHRLL Trigger: AAGCAGCCGGTGTATGTTGCAGATGTTTCCAAGGGG...GTCACCCAGGTCACCTGTGTGCAGTAAAAGAGTCACTCTATTAAATATCCGAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| CDS-3UTR GCA 90 bp | CCTCGGATATTTAATAGAGTGACTCTTTTACTGCACACAGGTGACCTGGGTGACAGGTCCGATGGGTCATaGCAAAGATGTACTTCACCA | + |
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Preference number: 4 (lower is better) Translates to: PRIFNRVTLLLHTGDLGDRSDGS*QRCTSP Trigger: TGGTGAAGTACATCTTTGGCATGACCCATCGGACCT...GTCACCCAGGTCACCTGTGTGCAGTAAAAGAGTCACTCTATTAAATATCCGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| CDS-3UTR CCA 90 bp | CCTCGGATATTTAATAGAGTGACTCTTTTACTGCACACAGGTGACCTGGGTGACATGTACTTCACCAAGTaGAAGAGCAGGTACCGGTTT | + |
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Preference number: 4 (lower is better) Translates to: PRIFNRVTLLLHTGDLGDMYFTK*KSRYRF Trigger: AAACCGGTACCTGCTCTTCCACTTGGTGAAGTACAT...GTCACCCAGGTCACCTGTGTGCAGTAAAAGAGTCACTCTATTAAATATCCGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| CDS-3UTR CCA 90 bp | TTATTTAATAGAAAACAAGCCTCAGTTCTGAATGGCTGTGAGTTCCTCTCTGATGGACTTGAGCTCCAGTaGTGTGGGCTGAACACCAAG | + |
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Preference number: 4 (lower is better) Translates to: LFNRKQASVLNGCEFLSDGLELQ*CGLNTK Trigger: CTTGGTGTTCAGCCCACACCACTGGAGCTCAAGTCC...ATCAGAGAGGAACTCACAGCCATTCAGAACTGAGGCTTGTTTTCTATTAAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| CDS-3UTR TCA 90 bp | ATAAGAATTCCAAACCCTCTAACATTTCAGAGAACAGTTGTGTGTGTCGATATTTCCAGTGGTGTGGGCTaGACACCAAGATCTTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: IRIPNPLTFQRTVVCVDISSGVG*TPRSSR Trigger: CCTGGAAGATCTTGGTGTTCAGCCCACACCACTGGA...AATATCGACACACACAACTGTTCTCTGAAATGTTAGAGGGTTTGGAATTCTTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| CDS-3UTR GCA 90 bp | ATAAGAATTCCAAACCCTCTAACATTTCAGAGAACAGTTGTGTGTGTCGATATTGCAACATACACCGGCTaGTTCACTGTCTTAAAGCCC | + |
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Preference number: 4 (lower is better) Translates to: IRIPNPLTFQRTVVCVDIATYTG*FTVLKP Trigger: GGGCTTTAAGACAGTGAAGCAGCCGGTGTATGTTGC...AATATCGACACACACAACTGTTCTCTGAAATGTTAGAGGGTTTGGAATTCTTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| CDS-3UTR CCA 90 bp | CCTTGGTATAAGAATTCCAAACCCTCTAACATTTCAGAGAACAGTTGTGTGTGTCAAAATCAAAGTTTCTaGTTTCCCACTCCCGCCCAA | + |
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Preference number: 4 (lower is better) Translates to: PWYKNSKPSNISENSCVCQNQSF*FPTPAQ Trigger: TTGGGCGGGAGTGGGAAACCAGAAACTTTGATTTTG...ACACACACAACTGTTCTCTGAAATGTTAGAGGGTTTGGAATTCTTATACCAAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| CDS-3UTR TCA 90 bp | TTATTTAATAGAAAACAAGCCTCAGTTCTGAATGGCTGTGAGTTCCTCTCTGATGGTGTGAAACATGAATaGATCTCTCAACCCCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: LFNRKQASVLNGCEFLSDGVKHE*ISQPQL Trigger: AAGCTGGGGTTGAGAGATTCATTCATGTTTCACACC...ATCAGAGAGGAACTCACAGCCATTCAGAACTGAGGCTTGTTTTCTATTAAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| CDS-3UTR TCA 90 bp | CCTTGGTATAAGAATTCCAAACCCTCTAACATTTCAGAGAACAGTTGTGTGTGTACTGGCATTCAGGTGTaGAACATGAATGAATCTCTC | + |
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Preference number: 4 (lower is better) Translates to: PWYKNSKPSNISENSCVCTGIQV*NMNESL Trigger: GAGAGATTCATTCATGTTTCACACCTGAATGCCAGT...ACACACACAACTGTTCTCTGAAATGTTAGAGGGTTTGGAATTCTTATACCAAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| CDS-3UTR GCA 90 bp | TTATTTAATAGAAAACAAGCCTCAGTTCTGAATGGCTGTGAGTTCCTCTCTGATCCCATCAGACGAAGGTaGATGATGTCATATACATCA | + |
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Preference number: 4 (lower is better) Translates to: LFNRKQASVLNGCEFLSDPIRRR*MMSYTS Trigger: TGATGTATATGACATCATGCACCTTCGTCTGATGGG...ATCAGAGAGGAACTCACAGCCATTCAGAACTGAGGCTTGTTTTCTATTAAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| CDS-3UTR GCA 90 bp | TTATTTAATAGAAAACAAGCCTCAGTTCTGAATGGCTGTGAGTTCCTCTCTGATTCAGCCCAAAGAGTTTaGCAATCCAGCTATACACAA | + |
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Preference number: 4 (lower is better) Translates to: LFNRKQASVLNGCEFLSDSAQRV*QSSYTQ Trigger: TTGTGTATAGCTGGATTGGCAAACTCTTTGGGCTGA...ATCAGAGAGGAACTCACAGCCATTCAGAACTGAGGCTTGTTTTCTATTAAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| CDS-3UTR CAA 90 bp | CCTCGGATATTTAATAGAGTGACTCTTTTACTGCACACAGGTGACCTGGGTGACTTCTCTCCCACTGCCTaGCTCCTCAAGGACTTAGAA | + |
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Preference number: 5 (lower is better) Translates to: PRIFNRVTLLLHTGDLGDFSPTA*LLKDLE Trigger: TTCTAAGTCCTTGAGGAGCAAGGCAGTGGGAGAGAA...GTCACCCAGGTCACCTGTGTGCAGTAAAAGAGTCACTCTATTAAATATCCGAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| CDS TCA 90 bp | GTTTGCCAATCCAGCTATACACAAATAGTGGCAAAGGGTAAGGGATaGAGGTCCGATGGGTCATGCCAAAGATGTACTTCACCAAGTGGA | + |
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Preference number: 5 (lower is better) Translates to: VCQSSYTQIVAKGKG*RSDGSCQRCTSPSG Trigger: TCCACTTGGTGAAGTACATCTTTGGCATGACCCATCGGACCTTCATCCCTTACCCTTTGCCACTATTTGTGTATAGCTGGATTGGCAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088194.7 ENSMUST00000205002.3 |
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| CDS GCA 90 bp | GATGATGGCTTCAGGAAACACACTTCTCACTTCCTTCTCTCCCACTaGCTTGCTCCTCAAGGACTTAGAAGAACTCTTCATACTGGCATT | + |
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Preference number: 5 (lower is better) Translates to: DDGFRKHTSHFLLSH*LAPQGLRRTLHTGI Trigger: AATGCCAGTATGAAGAGTTCTTCTAAGTCCTTGAGGAGCAAGGCAGTGGGAGAGAAGGAAGTGAGAAGTGTGTTTCCTGAAGCCATCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088194.7 ENSMUST00000205002.3 |
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| CDS GCA 90 bp | GTCGCATTAACAATCCCCTTGGAAACATCTGCAACATACACCGGCTaGTTCACTGTCTTAAAGCCCAAAGAAACAAGAGGCACAGCAAGA | + |
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Preference number: 5 (lower is better) Translates to: VALTIPLETSATYTG*FTVLKPKETRGTAR Trigger: TCTTGCTGTGCCTCTTGTTTCTTTGGGCTTTAAGACAGTGAAGCAGCCGGTGTATGTTGCAGATGTTTCCAAGGGGATTGTTAATGCGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088194.7 ENSMUST00000205002.3 |
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| CDS-3UTR CAA 90 bp | TTATTTAATAGAAAACAAGCCTCAGTTCTGAATGGCTGTGAGTTCCTCTCTGATGCATTAACAATCCCCTaGGAAACATCTGCAACATAC | + |
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Preference number: 5 (lower is better) Translates to: LFNRKQASVLNGCEFLSDALTIP*ETSATY Trigger: GTATGTTGCAGATGTTTCCAAGGGGATTGTTAATGC...ATCAGAGAGGAACTCACAGCCATTCAGAACTGAGGCTTGTTTTCTATTAAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000205002.3 |
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| CDS CAA 90 bp | GGCAGGTCGGTCGGCATCACGTCTGAGATATGTATCCGCTCCACCTaGTCCTTCGTCGTCCAGGGCTCAAATGGACTCAGCCCAAAGAGT | + |
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Preference number: 6 (lower is better) Translates to: GRSVGITSEICIRST*SFVVQGSNGLSPKS Trigger: ACTCTTTGGGCTGAGTCCATTTGAGCCCTGGACGACGAAGGACAAGGTGGAGCGGATACATATCTCAGACGTGATGCCGACCGACCTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088194.7 ENSMUST00000205002.3 |
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| CDS CAA 72 bp | GTCGGCATCACGTCTGAGATATGTATCCGCTCCACCTaGTCCTTCGTCGTCCAGGGCTCAAATGGACTCAGC | + |
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Preference number: 6 (lower is better) Translates to: VGITSEICIRST*SFVVQGSNGLS Trigger: GCTGAGTCCATTTGAGCCCTGGACGACGAAGGACAAGGTGGAGCGGATACATATCTCAGACGTGATGCCGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088194.7 ENSMUST00000205002.3 |
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| CDS CCA 72 bp | CCGCTCCACCTTGTCCTTCGTCGTCCAGGGCTCAAATaGACTCAGCCCAAAGAGTTTGCCAATCCAGCTATA | + |
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Preference number: 6 (lower is better) Translates to: PLHLVLRRPGLK*TQPKEFANPAI Trigger: TATAGCTGGATTGGCAAACTCTTTGGGCTGAGTCCATTTGAGCCCTGGACGACGAAGGACAAGGTGGAGCGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088194.7 ENSMUST00000205002.3 |
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| CDS TCA 72 bp | TCACCAAGTGGAAGAGCAGGTACCGGTTTGGCCCAGTaGAGGCAAAGGTTTTTCCTACGGCATCTGGATCCT | + |
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Preference number: 6 (lower is better) Translates to: SPSGRAGTGLAQ*RQRFFLRHLDP Trigger: AGGATCCAGATGCCGTAGGAAAAACCTTTGCCTTCACTGGGCCAAACCGGTACCTGCTCTTCCACTTGGTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000088194.7 ENSMUST00000205002.3 |
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| CDS CAA 72 bp | GTCGTCCAGGGCTCAAATGGACTCAGCCCAAAGAGTTaGCCAATCCAGCTATACACAAATAGTGGCAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: VVQGSNGLSPKS*PIQLYTNSGKG Trigger: CCCTTTGCCACTATTTGTGTATAGCTGGATTGGCAAACTCTTTGGGCTGAGTCCATTTGAGCCCTGGACGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088194.7 ENSMUST00000205002.3 |
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| CDS GCA 72 bp | TCGTCCAGGGCTCAAATGGACTCAGCCCAAAGAGTTTaGCAATCCAGCTATACACAAATAGTGGCAAAGGGT | + |
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Preference number: 6 (lower is better) Translates to: SSRAQMDSAQRV*QSSYTQIVAKG Trigger: ACCCTTTGCCACTATTTGTGTATAGCTGGATTGGCAAACTCTTTGGGCTGAGTCCATTTGAGCCCTGGACGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088194.7 ENSMUST00000205002.3 |
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| CDS TCA 72 bp | TCCAGCTATACACAAATAGTGGCAAAGGGTAAGGGATaGAGGTCCGATGGGTCATGCCAAAGATGTACTTCA | + |
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Preference number: 6 (lower is better) Translates to: SSYTQIVAKGKG*RSDGSCQRCTS Trigger: TGAAGTACATCTTTGGCATGACCCATCGGACCTTCATCCCTTACCCTTTGCCACTATTTGTGTATAGCTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088194.7 ENSMUST00000205002.3 |
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