RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NDUFA8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026895

Ensembl transcript IDs: ENSMUST00000070112.6

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp CAGGAAATGTATAGAATAACTGCCAAGTCACATAAATTAACTTTTTaGTTAATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGG +
Preference number: 2 (lower is better)
Translates to: QEMYRITAKSHKLTF*LMSVIQERTRDRHG
Trigger: CCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACATTAACAAAAAAGTTAATTTATGTGACTTGGCAGTTATTCTATACATTTCCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR CCA 90 bp CGGCACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGCTTCAGGCAGCGCCTTaGGTCCTTCTCTTCCCAGCG +
Preference number: 4 (lower is better)
Translates to: RHGCFRRLLSGRMTEVTKLQAAP*VLLFPA
Trigger: CGCTGGGAAGAGAAGGACCCAAGGCGCTGCCTGAAG...CTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR TCA 90 bp TTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGTGTGGACCGTCATCAGCGCACAGCCGTTaGCCAGCTTGCCCTCCTTCA +
Preference number: 4 (lower is better)
Translates to: FRRLLSGRMTEVTKCGPSSAHSR*PACPPS
Trigger: TGAAGGAGGGCAAGCTGGTCAACGGCTGTGCGCTGA...TGACGGTCCACACTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR GCA 90 bp GATCGGCACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCACACTGGTCAAACTTTaGCTGCTGCTGGCGGCAGTG +
Preference number: 4 (lower is better)
Translates to: DRHGCFRRLLSGRMTEVTTLVKL*LLLAAV
Trigger: CACTGCCGCCAGCAGCAGGCAAAGTTTGACCAGTGT...GGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTGCCGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR TCA 90 bp GATCGGCACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGTCCAGTACTCTGTaGAAGGCTCCGCACAGTGAC +
Preference number: 4 (lower is better)
Translates to: DRHGCFRRLLSGRMTEVTKSSTL*KAPHSD
Trigger: GTCACTGTGCGGAGCCTTTCACAGAGTACTGGACTT...GGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTGCCGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR TCA 90 bp TCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGTGTGGACCGTCAACCCAGACTCTTTATCTGCCTaGAGAAGTTCAGCGCACAGC +
Preference number: 4 (lower is better)
Translates to: SSVVWAHDRGDQVWTVNPDSLSA*RSSAHS
Trigger: GCTGTGCGCTGAACTTCTTCAGGCAGATAAAGAGTC...TGGGTTGACGGTCCACACTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR TCA 90 bp TCGGCACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAAAAGGCTCCGCACAGTaGCTCTTTATCTGCCTGAAG +
Preference number: 4 (lower is better)
Translates to: SARVFSSSVVWAHDRGDQKGSAQ*LFICLK
Trigger: CTTCAGGCAGATAAAGAGTCACTGTGCGGAGCCTTT...TTGGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTGCCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR CCA 90 bp CACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGTGTCTTCAATCACAGGGTTaGGCTCTGGCCTTGCTCTTG +
Preference number: 4 (lower is better)
Translates to: HGCFRRLLSGRMTEVTKCLQSQG*ALALLL
Trigger: CAAGAGCAAGGCCAGAGCCCAACCCTGTGATTGAAG...ACACTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR CCA 90 bp TTAATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGGTGTTTTCGTCGTAGCGGGTGCCGTGCTTaGCGGGTTTCAGATCCCCTT +
Preference number: 4 (lower is better)
Translates to: LMSVIQERTRDRHGCFRRSGCRA*RVSDPL
Trigger: AAGGGGATCTGAAACCCGCCAAGCACGGCACCCGCT...ACGACGAAAACACCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACATTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR TCA 90 bp GTTAATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGGTGTTTTCGTCGAGCTTTAAGCACAGCTaGGCTGACTTTCACCTCCTC +
Preference number: 4 (lower is better)
Translates to: VNVCDPGKNTRSARVFSSSFKHS*ADFHLL
Trigger: GAGGAGGTGAAAGTCAGCTCAGCTGTGCTTAAAGCT...CGACGAAAACACCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACATTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR CCA 90 bp GTTAATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGGTGTTTTCGTCGTTGTCCAGCACACACTaGTCAAACTTTGCCTGCTGC +
Preference number: 4 (lower is better)
Translates to: VNVCDPGKNTRSARVFSSLSSTH*SNFACC
Trigger: GCAGCAGGCAAAGTTTGACCAGTGTGTGCTGGACAA...CGACGAAAACACCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACATTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR CAA 90 bp CGGCACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGTCAGCTCTTCCAGAGTaGGCAGCTCCACTATCCCCG +
Preference number: 5 (lower is better)
Translates to: RHGCFRRLLSGRMTEVTKSALPE*AAPLSP
Trigger: CGGGGATAGTGGAGCTGCCAACTCTGGAAGAGCTGA...CTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS CCA 90 bp CAGCGCACAGCCGTTGACCAGCTTGCCCTCCTTCAGGCAGCGCCTTaGGTCCTTCTCTTCCCAGCGGCACAGCATAAACTCCTTATTGGT +
Preference number: 5 (lower is better)
Translates to: QRTAVDQLALLQAAP*VLLFPAAQHKLLIG
Trigger: ACCAATAAGGAGTTTATGCTGTGCCGCTGGGAAGAGAAGGACCCAAGGCGCTGCCTGAAGGAGGGCAAGCTGGTCAACGGCTGTGCGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS GCA 90 bp CGGCCTCACCCAGCCCAGTTTGTCCAGCACACACTGGTCAAACTTTaGCTGCTGCTGGCGGCAGTGACGAAACAGCTGCATGTTGGAGTA +
Preference number: 5 (lower is better)
Translates to: RPHPAQFVQHTLVKL*LLLAAVTKQLHVGV
Trigger: TACTCCAACATGCAGCTGTTTCGTCACTGCCGCCAGCAGCAGGCAAAGTTTGACCAGTGTGTGCTGGACAAACTGGGCTGGGTGAGGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR CAA 90 bp TCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGTGTGGACCGTCAACCCACCTTCAATCACAGGGTaGGGCTCTGGCCTTGCTCTT +
Preference number: 5 (lower is better)
Translates to: SSVVWAHDRGDQVWTVNPPSITG*GSGLAL
Trigger: AAGAGCAAGGCCAGAGCCCAACCCTGTGATTGAAGG...TGGGTTGACGGTCCACACTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR CAA 90 bp CGGCACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGGCTCTGGCCTTGCTCTaGAGTGATAAGGATTCTCTG +
Preference number: 5 (lower is better)
Translates to: RHGCFRRLLSGRMTEVTKALALL*SDKDSL
Trigger: CAGAGAATCCTTATCACTCAAGAGCAAGGCCAGAGC...CTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTGCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR CAA 90 bp TTAATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGGTGTTTTCGTCGTCCTTCAGGCAGCGCCTaGGGTCCTTCTCTTCCCAGC +
Preference number: 5 (lower is better)
Translates to: LMSVIQERTRDRHGCFRRPSGSA*GPSLPS
Trigger: GCTGGGAAGAGAAGGACCCAAGGCGCTGCCTGAAGG...ACGACGAAAACACCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACATTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR CAA 90 bp ATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGGTGTTTTCGTCGTCTGCACACTGGTCAAACTTaGCCTGCTGCTGGCGGCAGT +
Preference number: 5 (lower is better)
Translates to: MSVIQERTRDRHGCFRRLHTGQT*PAAGGS
Trigger: ACTGCCGCCAGCAGCAGGCAAAGTTTGACCAGTGTG...CAGACGACGAAAACACCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR CAA 90 bp TTAATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGGTGTTTTCGTCGTCTCACCCAGCCCAGTTaGTCCAGCACACACTGGTCA +
Preference number: 5 (lower is better)
Translates to: LMSVIQERTRDRHGCFRRLTQPS*SSTHWS
Trigger: TGACCAGTGTGTGCTGGACAAACTGGGCTGGGTGAG...ACGACGAAAACACCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACATTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR CAA 90 bp CACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGTGTCGATCTGTTTTCACTTaGGTGACCTTAGACAACTGC +
Preference number: 5 (lower is better)
Translates to: HGCFRRLLSGRMTEVTKCRSVFT*VTLDNC
Trigger: GCAGTTGTCTAAGGTCACCAAAGTGAAAACAGATCG...ACACTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS-3UTR CAA 90 bp GTTAATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGGTGTTTTCGTCGGGTTGGGCTCTGGCCTaGCTCTTGAGTGATAAGGAT +
Preference number: 5 (lower is better)
Translates to: VNVCDPGKNTRSARVFSSGWALA*LLSDKD
Trigger: ATCCTTATCACTCAAGAGCAAGGCCAGAGCCCAACC...CGACGAAAACACCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACATTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS CAA 72 bp TGCCTGAAGAAGTTCAGCGCACAGCCGTTGACCAGCTaGCCCTCCTTCAGGCAGCGCCTTGGGTCCTTCTCT +
Preference number: 6 (lower is better)
Translates to: CLKKFSAQPLTS*PSFRQRLGSFS
Trigger: AGAGAAGGACCCAAGGCGCTGCCTGAAGGAGGGCAAGCTGGTCAACGGCTGTGCGCTGAACTTCTTCAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS CAA 90 bp CTCTTTATCTGCCTGAAGAAGTTCAGCGCACAGCCGTTGACCAGCTaGCCCTCCTTCAGGCAGCGCCTTGGGTCCTTCTCTTCCCAGCGG +
Preference number: 6 (lower is better)
Translates to: LFICLKKFSAQPLTS*PSFRQRLGSFSSQR
Trigger: CCGCTGGGAAGAGAAGGACCCAAGGCGCTGCCTGAAGGAGGGCAAGCTGGTCAACGGCTGTGCGCTGAACTTCTTCAGGCAGATAAAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS CAA 90 bp CCGGCCTCACCCAGCCCAGTTTGTCCAGCACACACTGGTCAAACTTaGCCTGCTGCTGGCGGCAGTGACGAAACAGCTGCATGTTGGAGT +
Preference number: 6 (lower is better)
Translates to: PASPSPVCPAHTGQT*PAAGGSDETAACWS
Trigger: ACTCCAACATGCAGCTGTTTCGTCACTGCCGCCAGCAGCAGGCAAAGTTTGACCAGTGTGTGCTGGACAAACTGGGCTGGGTGAGGCCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS CAA 72 bp CCCAGCCCAGTTTGTCCAGCACACACTGGTCAAACTTaGCCTGCTGCTGGCGGCAGTGACGAAACAGCTGCA +
Preference number: 6 (lower is better)
Translates to: PSPVCPAHTGQT*PAAGGSDETAA
Trigger: TGCAGCTGTTTCGTCACTGCCGCCAGCAGCAGGCAAAGTTTGACCAGTGTGTGCTGGACAAACTGGGCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS GCA 72 bp CCAGCCCAGTTTGTCCAGCACACACTGGTCAAACTTTaGCTGCTGCTGGCGGCAGTGACGAAACAGCTGCAT +
Preference number: 6 (lower is better)
Translates to: PAQFVQHTLVKL*LLLAAVTKQLH
Trigger: ATGCAGCTGTTTCGTCACTGCCGCCAGCAGCAGGCAAAGTTTGACCAGTGTGTGCTGGACAAACTGGGCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS CAA 72 bp CCCCTTCAATCACAGGGTTGGGCTCTGGCCTTGCTCTaGAGTGATAAGGATTCTCTGGCAAAGGACGATCTG +
Preference number: 6 (lower is better)
Translates to: PLQSQGWALALL*SDKDSLAKDDL
Trigger: CAGATCGTCCTTTGCCAGAGAATCCTTATCACTCAAGAGCAAGGCCAGAGCCCAACCCTGTGATTGAAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS TCA 72 bp AGGCAAGTCCAGTACTCTGTGAAAGGCTCCGCACAGTaGCTCTTTATCTGCCTGAAGAAGTTCAGCGCACAG +
Preference number: 6 (lower is better)
Translates to: RQVQYSVKGSAQ*LFICLKKFSAQ
Trigger: CTGTGCGCTGAACTTCTTCAGGCAGATAAAGAGTCACTGTGCGGAGCCTTTCACAGAGTACTGGACTTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS TCA 72 bp CCCTTCAATCACAGGGTTGGGCTCTGGCCTTGCTCTTaGGTGATAAGGATTCTCTGGCAAAGGACGATCTGT +
Preference number: 6 (lower is better)
Translates to: PFNHRVGLWPCS*VIRILWQRTIC
Trigger: ACAGATCGTCCTTTGCCAGAGAATCCTTATCACTCAAGAGCAAGGCCAGAGCCCAACCCTGTGATTGAAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6
CDS CAA 72 bp TCAGATCCCCTTCAATCACAGGGTTGGGCTCTGGCCTaGCTCTTGAGTGATAAGGATTCTCTGGCAAAGGAC +
Preference number: 6 (lower is better)
Translates to: SDPLQSQGWALA*LLSDKDSLAKD
Trigger: GTCCTTTGCCAGAGAATCCTTATCACTCAAGAGCAAGGCCAGAGCCCAACCCTGTGATTGAAGGGGATCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070112.6