Pregenerated sensors for NDUFA8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026895Ensembl transcript IDs: ENSMUST00000070112.6
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CAA 90 bp | CAGGAAATGTATAGAATAACTGCCAAGTCACATAAATTAACTTTTTaGTTAATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGG | + |
Preference number: 2 (lower is better) Translates to: QEMYRITAKSHKLTF*LMSVIQERTRDRHG Trigger: CCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACATTAACAAAAAAGTTAATTTATGTGACTTGGCAGTTATTCTATACATTTCCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR CCA 90 bp | CGGCACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGCTTCAGGCAGCGCCTTaGGTCCTTCTCTTCCCAGCG | + |
Preference number: 4 (lower is better) Translates to: RHGCFRRLLSGRMTEVTKLQAAP*VLLFPA Trigger: CGCTGGGAAGAGAAGGACCCAAGGCGCTGCCTGAAG...CTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTGCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR TCA 90 bp | TTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGTGTGGACCGTCATCAGCGCACAGCCGTTaGCCAGCTTGCCCTCCTTCA | + |
Preference number: 4 (lower is better) Translates to: FRRLLSGRMTEVTKCGPSSAHSR*PACPPS Trigger: TGAAGGAGGGCAAGCTGGTCAACGGCTGTGCGCTGA...TGACGGTCCACACTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR GCA 90 bp | GATCGGCACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCACACTGGTCAAACTTTaGCTGCTGCTGGCGGCAGTG | + |
Preference number: 4 (lower is better) Translates to: DRHGCFRRLLSGRMTEVTTLVKL*LLLAAV Trigger: CACTGCCGCCAGCAGCAGGCAAAGTTTGACCAGTGT...GGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTGCCGATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR TCA 90 bp | GATCGGCACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGTCCAGTACTCTGTaGAAGGCTCCGCACAGTGAC | + |
Preference number: 4 (lower is better) Translates to: DRHGCFRRLLSGRMTEVTKSSTL*KAPHSD Trigger: GTCACTGTGCGGAGCCTTTCACAGAGTACTGGACTT...GGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTGCCGATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR TCA 90 bp | TCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGTGTGGACCGTCAACCCAGACTCTTTATCTGCCTaGAGAAGTTCAGCGCACAGC | + |
Preference number: 4 (lower is better) Translates to: SSVVWAHDRGDQVWTVNPDSLSA*RSSAHS Trigger: GCTGTGCGCTGAACTTCTTCAGGCAGATAAAGAGTC...TGGGTTGACGGTCCACACTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR TCA 90 bp | TCGGCACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAAAAGGCTCCGCACAGTaGCTCTTTATCTGCCTGAAG | + |
Preference number: 4 (lower is better) Translates to: SARVFSSSVVWAHDRGDQKGSAQ*LFICLK Trigger: CTTCAGGCAGATAAAGAGTCACTGTGCGGAGCCTTT...TTGGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTGCCGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR CCA 90 bp | CACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGTGTCTTCAATCACAGGGTTaGGCTCTGGCCTTGCTCTTG | + |
Preference number: 4 (lower is better) Translates to: HGCFRRLLSGRMTEVTKCLQSQG*ALALLL Trigger: CAAGAGCAAGGCCAGAGCCCAACCCTGTGATTGAAG...ACACTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR CCA 90 bp | TTAATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGGTGTTTTCGTCGTAGCGGGTGCCGTGCTTaGCGGGTTTCAGATCCCCTT | + |
Preference number: 4 (lower is better) Translates to: LMSVIQERTRDRHGCFRRSGCRA*RVSDPL Trigger: AAGGGGATCTGAAACCCGCCAAGCACGGCACCCGCT...ACGACGAAAACACCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACATTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR TCA 90 bp | GTTAATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGGTGTTTTCGTCGAGCTTTAAGCACAGCTaGGCTGACTTTCACCTCCTC | + |
Preference number: 4 (lower is better) Translates to: VNVCDPGKNTRSARVFSSSFKHS*ADFHLL Trigger: GAGGAGGTGAAAGTCAGCTCAGCTGTGCTTAAAGCT...CGACGAAAACACCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACATTAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR CCA 90 bp | GTTAATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGGTGTTTTCGTCGTTGTCCAGCACACACTaGTCAAACTTTGCCTGCTGC | + |
Preference number: 4 (lower is better) Translates to: VNVCDPGKNTRSARVFSSLSSTH*SNFACC Trigger: GCAGCAGGCAAAGTTTGACCAGTGTGTGCTGGACAA...CGACGAAAACACCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACATTAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR CAA 90 bp | CGGCACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGTCAGCTCTTCCAGAGTaGGCAGCTCCACTATCCCCG | + |
Preference number: 5 (lower is better) Translates to: RHGCFRRLLSGRMTEVTKSALPE*AAPLSP Trigger: CGGGGATAGTGGAGCTGCCAACTCTGGAAGAGCTGA...CTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTGCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS CCA 90 bp | CAGCGCACAGCCGTTGACCAGCTTGCCCTCCTTCAGGCAGCGCCTTaGGTCCTTCTCTTCCCAGCGGCACAGCATAAACTCCTTATTGGT | + |
Preference number: 5 (lower is better) Translates to: QRTAVDQLALLQAAP*VLLFPAAQHKLLIG Trigger: ACCAATAAGGAGTTTATGCTGTGCCGCTGGGAAGAGAAGGACCCAAGGCGCTGCCTGAAGGAGGGCAAGCTGGTCAACGGCTGTGCGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS GCA 90 bp | CGGCCTCACCCAGCCCAGTTTGTCCAGCACACACTGGTCAAACTTTaGCTGCTGCTGGCGGCAGTGACGAAACAGCTGCATGTTGGAGTA | + |
Preference number: 5 (lower is better) Translates to: RPHPAQFVQHTLVKL*LLLAAVTKQLHVGV Trigger: TACTCCAACATGCAGCTGTTTCGTCACTGCCGCCAGCAGCAGGCAAAGTTTGACCAGTGTGTGCTGGACAAACTGGGCTGGGTGAGGCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR CAA 90 bp | TCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGTGTGGACCGTCAACCCACCTTCAATCACAGGGTaGGGCTCTGGCCTTGCTCTT | + |
Preference number: 5 (lower is better) Translates to: SSVVWAHDRGDQVWTVNPPSITG*GSGLAL Trigger: AAGAGCAAGGCCAGAGCCCAACCCTGTGATTGAAGG...TGGGTTGACGGTCCACACTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR CAA 90 bp | CGGCACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGGCTCTGGCCTTGCTCTaGAGTGATAAGGATTCTCTG | + |
Preference number: 5 (lower is better) Translates to: RHGCFRRLLSGRMTEVTKALALL*SDKDSL Trigger: CAGAGAATCCTTATCACTCAAGAGCAAGGCCAGAGC...CTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTGCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR CAA 90 bp | TTAATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGGTGTTTTCGTCGTCCTTCAGGCAGCGCCTaGGGTCCTTCTCTTCCCAGC | + |
Preference number: 5 (lower is better) Translates to: LMSVIQERTRDRHGCFRRPSGSA*GPSLPS Trigger: GCTGGGAAGAGAAGGACCCAAGGCGCTGCCTGAAGG...ACGACGAAAACACCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACATTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR CAA 90 bp | ATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGGTGTTTTCGTCGTCTGCACACTGGTCAAACTTaGCCTGCTGCTGGCGGCAGT | + |
Preference number: 5 (lower is better) Translates to: MSVIQERTRDRHGCFRRLHTGQT*PAAGGS Trigger: ACTGCCGCCAGCAGCAGGCAAAGTTTGACCAGTGTG...CAGACGACGAAAACACCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR CAA 90 bp | TTAATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGGTGTTTTCGTCGTCTCACCCAGCCCAGTTaGTCCAGCACACACTGGTCA | + |
Preference number: 5 (lower is better) Translates to: LMSVIQERTRDRHGCFRRLTQPS*SSTHWS Trigger: TGACCAGTGTGTGCTGGACAAACTGGGCTGGGTGAG...ACGACGAAAACACCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACATTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR CAA 90 bp | CACGGGTGTTTTCGTCGTCTGTTGTCTGGGCGCATGACCGAGGTGACCAAGTGTCGATCTGTTTTCACTTaGGTGACCTTAGACAACTGC | + |
Preference number: 5 (lower is better) Translates to: HGCFRRLLSGRMTEVTKCRSVFT*VTLDNC Trigger: GCAGTTGTCTAAGGTCACCAAAGTGAAAACAGATCG...ACACTTGGTCACCTCGGTCATGCGCCCAGACAACAGACGACGAAAACACCCGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS-3UTR CAA 90 bp | GTTAATGTCTGTGATCCAGGAAAGAACACGAGATCGGCACGGGTGTTTTCGTCGGGTTGGGCTCTGGCCTaGCTCTTGAGTGATAAGGAT | + |
Preference number: 5 (lower is better) Translates to: VNVCDPGKNTRSARVFSSGWALA*LLSDKD Trigger: ATCCTTATCACTCAAGAGCAAGGCCAGAGCCCAACC...CGACGAAAACACCCGTGCCGATCTCGTGTTCTTTCCTGGATCACAGACATTAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS CAA 72 bp | TGCCTGAAGAAGTTCAGCGCACAGCCGTTGACCAGCTaGCCCTCCTTCAGGCAGCGCCTTGGGTCCTTCTCT | + |
Preference number: 6 (lower is better) Translates to: CLKKFSAQPLTS*PSFRQRLGSFS Trigger: AGAGAAGGACCCAAGGCGCTGCCTGAAGGAGGGCAAGCTGGTCAACGGCTGTGCGCTGAACTTCTTCAGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS CAA 90 bp | CTCTTTATCTGCCTGAAGAAGTTCAGCGCACAGCCGTTGACCAGCTaGCCCTCCTTCAGGCAGCGCCTTGGGTCCTTCTCTTCCCAGCGG | + |
Preference number: 6 (lower is better) Translates to: LFICLKKFSAQPLTS*PSFRQRLGSFSSQR Trigger: CCGCTGGGAAGAGAAGGACCCAAGGCGCTGCCTGAAGGAGGGCAAGCTGGTCAACGGCTGTGCGCTGAACTTCTTCAGGCAGATAAAGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS CAA 90 bp | CCGGCCTCACCCAGCCCAGTTTGTCCAGCACACACTGGTCAAACTTaGCCTGCTGCTGGCGGCAGTGACGAAACAGCTGCATGTTGGAGT | + |
Preference number: 6 (lower is better) Translates to: PASPSPVCPAHTGQT*PAAGGSDETAACWS Trigger: ACTCCAACATGCAGCTGTTTCGTCACTGCCGCCAGCAGCAGGCAAAGTTTGACCAGTGTGTGCTGGACAAACTGGGCTGGGTGAGGCCGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS CAA 72 bp | CCCAGCCCAGTTTGTCCAGCACACACTGGTCAAACTTaGCCTGCTGCTGGCGGCAGTGACGAAACAGCTGCA | + |
Preference number: 6 (lower is better) Translates to: PSPVCPAHTGQT*PAAGGSDETAA Trigger: TGCAGCTGTTTCGTCACTGCCGCCAGCAGCAGGCAAAGTTTGACCAGTGTGTGCTGGACAAACTGGGCTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS GCA 72 bp | CCAGCCCAGTTTGTCCAGCACACACTGGTCAAACTTTaGCTGCTGCTGGCGGCAGTGACGAAACAGCTGCAT | + |
Preference number: 6 (lower is better) Translates to: PAQFVQHTLVKL*LLLAAVTKQLH Trigger: ATGCAGCTGTTTCGTCACTGCCGCCAGCAGCAGGCAAAGTTTGACCAGTGTGTGCTGGACAAACTGGGCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS CAA 72 bp | CCCCTTCAATCACAGGGTTGGGCTCTGGCCTTGCTCTaGAGTGATAAGGATTCTCTGGCAAAGGACGATCTG | + |
Preference number: 6 (lower is better) Translates to: PLQSQGWALALL*SDKDSLAKDDL Trigger: CAGATCGTCCTTTGCCAGAGAATCCTTATCACTCAAGAGCAAGGCCAGAGCCCAACCCTGTGATTGAAGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS TCA 72 bp | AGGCAAGTCCAGTACTCTGTGAAAGGCTCCGCACAGTaGCTCTTTATCTGCCTGAAGAAGTTCAGCGCACAG | + |
Preference number: 6 (lower is better) Translates to: RQVQYSVKGSAQ*LFICLKKFSAQ Trigger: CTGTGCGCTGAACTTCTTCAGGCAGATAAAGAGTCACTGTGCGGAGCCTTTCACAGAGTACTGGACTTGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS TCA 72 bp | CCCTTCAATCACAGGGTTGGGCTCTGGCCTTGCTCTTaGGTGATAAGGATTCTCTGGCAAAGGACGATCTGT | + |
Preference number: 6 (lower is better) Translates to: PFNHRVGLWPCS*VIRILWQRTIC Trigger: ACAGATCGTCCTTTGCCAGAGAATCCTTATCACTCAAGAGCAAGGCCAGAGCCCAACCCTGTGATTGAAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |
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CDS CAA 72 bp | TCAGATCCCCTTCAATCACAGGGTTGGGCTCTGGCCTaGCTCTTGAGTGATAAGGATTCTCTGGCAAAGGAC | + |
Preference number: 6 (lower is better) Translates to: SDPLQSQGWALA*LLSDKDSLAKD Trigger: GTCCTTTGCCAGAGAATCCTTATCACTCAAGAGCAAGGCCAGAGCCCAACCCTGTGATTGAAGGGGATCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070112.6 |