Pregenerated sensors for NDUFA7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041881Ensembl transcript IDs: ENSMUST00000048249.8, ENSMUST00000173132.8
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | CCCACCTCTTCATGGGAGGAGCAGGTGTCACTGCCTTCTTCTCAGTaGCTGCCATTGCAGAACTCTCGGCGGCCTTGCCTGACACCAGGG | + |
Preference number: 1 (lower is better) Translates to: PTSSWEEQVSLPSSQ*LPLQNSRRPCLTPG Trigger: CCCTGGTGTCAGGCAAGGCCGCCGAGAGTTCTGCAATGGCAGCCACTGAGAAGAAGGCAGTGACACCTGCTCCTCCCATGAAGAGGTGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173132.8 |
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3UTR GCA 90 bp | GTCCTTGGACAGCTCCCACCTCTTCATGGGAGGAGCAGGTGTCACTaGCTTCTTCTCAGTGGCTGCCATTGCAGAACTCTCGGCGGCCTT | + |
Preference number: 1 (lower is better) Translates to: VLGQLPPLHGRSRCH*LLLSGCHCRTLGGL Trigger: AAGGCCGCCGAGAGTTCTGCAATGGCAGCCACTGAGAAGAAGGCAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGCTGTCCAAGGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173132.8 |
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3UTR CCA 90 bp | AGGGTCACAGGTATGGCTGGTCCTTGGACAGCTCCCACCTCTTCATaGGAGGAGCAGGTGTCACTGCCTTCTTCTCAGTGGCTGCCATTG | + |
Preference number: 1 (lower is better) Translates to: RVTGMAGPWTAPTSS*EEQVSLPSSQWLPL Trigger: CAATGGCAGCCACTGAGAAGAAGGCAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGCTGTCCAAGGACCAGCCATACCTGTGACCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173132.8 |
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3UTR CAA 90 bp | ACTGCCTTCTTCTCAGTGGCTGCCATTGCAGAACTCTCGGCGGCCTaGCCTGACACCAGGGCCTTTTGTGAGGACATGATGATTGAGGGA | + |
Preference number: 2 (lower is better) Translates to: TAFFSVAAIAELSAA*PDTRAFCEDMMIEG Trigger: TCCCTCAATCATCATGTCCTCACAAAAGGCCCTGGTGTCAGGCAAGGCCGCCGAGAGTTCTGCAATGGCAGCCACTGAGAAGAAGGCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173132.8 |
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3UTR-3UTR CCA 90 bp | TCACACTCTCCCCAGAGGGAGTCCAAGGAGGAAAAGCAGTCATGTGGCCCTAGAGGTATGGCTGGTCCTTaGACAGCTCCCACCTCTTCA | + |
Preference number: 2 (lower is better) Translates to: SHSPQRESKEEKQSCGPRGMAGP*TAPTSS Trigger: TGAAGAGGTGGGAGCTGTCCAAGGACCAGCCATACC...TCTAGGGCCACATGACTGCTTTTCCTCCTTGGACTCCCTCTGGGGAGAGTGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173132.8 |
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3UTR CCA 72 bp | TCATGGGAGGAGCAGGTGTCACTGCCTTCTTCTCAGTaGCTGCCATTGCAGAACTCTCGGCGGCCTTGCCTG | + |
Preference number: 3 (lower is better) Translates to: SWEEQVSLPSSQ*LPLQNSRRPCL Trigger: CAGGCAAGGCCGCCGAGAGTTCTGCAATGGCAGCCACTGAGAAGAAGGCAGTGACACCTGCTCCTCCCATGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173132.8 |
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3UTR CCA 72 bp | GGTATGGCTGGTCCTTGGACAGCTCCCACCTCTTCATaGGAGGAGCAGGTGTCACTGCCTTCTTCTCAGTGG | + |
Preference number: 3 (lower is better) Translates to: GMAGPWTAPTSS*EEQVSLPSSQW Trigger: CCACTGAGAAGAAGGCAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGCTGTCCAAGGACCAGCCATACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173132.8 |
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3UTR GCA 72 bp | CAGCTCCCACCTCTTCATGGGAGGAGCAGGTGTCACTaGCTTCTTCTCAGTGGCTGCCATTGCAGAACTCTC | + |
Preference number: 3 (lower is better) Translates to: QLPPLHGRSRCH*LLLSGCHCRTL Trigger: GAGAGTTCTGCAATGGCAGCCACTGAGAAGAAGGCAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173132.8 |
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CDS-3UTR CCA 90 bp | TGGTCCTTGGACAGCTCCCACCTCTTCATGGGAGGAGCAGGTGTCACTGCCTTCGGGGAGTTTCGGAGGTaGCTGGGTCCCCAGACGCCC | + |
Preference number: 4 (lower is better) Translates to: WSLDSSHLFMGGAGVTAFGEFRR*LGPQTP Trigger: GGGCGTCTGGGGACCCAGCCACCTCCGAAACTCCCC...GAAGGCAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGCTGTCCAAGGACCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173132.8 |
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3UTR CAA 72 bp | GAGCAGGTGTCACTGCCTTCTTCTCAGTGGCTGCCATaGCAGAACTCTCGGCGGCCTTGCCTGACACCAGGG | + |
Preference number: 4 (lower is better) Translates to: EQVSLPSSQWLP*QNSRRPCLTPG Trigger: CCCTGGTGTCAGGCAAGGCCGCCGAGAGTTCTGCAATGGCAGCCACTGAGAAGAAGGCAGTGACACCTGCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173132.8 |
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CDS-3UTR CCA 90 bp | TGGTCCTTGGACAGCTCCCACCTCTTCATGGGAGGAGCAGGTGTCACTGCCTTCTGGACAGCTTGTGACTaGGGCCCACGGGGAGTTTCG | + |
Preference number: 4 (lower is better) Translates to: WSLDSSHLFMGGAGVTAFWTACD*GPRGVS Trigger: CGAAACTCCCCGTGGGCCCCAGTCACAAGCTGTCCA...GAAGGCAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGCTGTCCAAGGACCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173132.8 |
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CDS-3UTR CCA 90 bp | CCCCAGAGGGAGTCCAAGGAGGAAAAGCAGTCATGTGGCCCTAGAGACATATATGTGGCTGGGTCCGCTTaGCGATCTCCTGGTAGCGCA | + |
Preference number: 4 (lower is better) Translates to: PQRESKEEKQSCGPRDIYVAGSA*RSPGSA Trigger: TGCGCTACCAGGAGATCGCCAAGCGGACCCAGCCAC...ATATATGTCTCTAGGGCCACATGACTGCTTTTCCTCCTTGGACTCCCTCTGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048249.8 |
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3UTR CAA 72 bp | TTCTCAGTGGCTGCCATTGCAGAACTCTCGGCGGCCTaGCCTGACACCAGGGCCTTTTGTGAGGACATGATG | + |
Preference number: 4 (lower is better) Translates to: FSVAAIAELSAA*PDTRAFCEDMM Trigger: CATCATGTCCTCACAAAAGGCCCTGGTGTCAGGCAAGGCCGCCGAGAGTTCTGCAATGGCAGCCACTGAGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173132.8 |
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CDS-3UTR CCA 90 bp | TGGCTGGTCCTTGGACAGCTCCCACCTCTTCATGGGAGGAGCAGGTGTCACTGCTACAGTAGTAATTGTTaGACAGCTTGTGACTGGGGC | + |
Preference number: 4 (lower is better) Translates to: WLVLGQLPPLHGRSRCHCYSSNC*TACDWG Trigger: GCCCCAGTCACAAGCTGTCCAACAATTACTACTGTA...GCAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGCTGTCCAAGGACCAGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173132.8 |
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CDS-3UTR GCA 90 bp | AGAGGGAGTCCAAGGAGGAAAAGCAGTCATGTGGCCCTAGAGACATATATAGCAAACTCTCGGCGGCCTTaGCTGACACCAGGGCCTTTT | + |
Preference number: 4 (lower is better) Translates to: RGSPRRKSSHVALETYIANSRRP*LTPGPF Trigger: AAAAGGCCCTGGTGTCAGGCAAGGCCGCCGAGAGTT...TGCTATATATGTCTCTAGGGCCACATGACTGCTTTTCCTCCTTGGACTCCCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048249.8 |
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CDS-3UTR GCA 90 bp | CCCAGAGGGAGTCCAAGGAGGAAAAGCAGTCATGTGGCCCTAGAGACATATATAAGGAGCAGGTGTCACTaGCTTCTTCTCAGTGGCTGC | + |
Preference number: 4 (lower is better) Translates to: PRGSPRRKSSHVALETYIRSRCH*LLLSGC Trigger: GCAGCCACTGAGAAGAAGGCAGTGACACCTGCTCCT...TATATATGTCTCTAGGGCCACATGACTGCTTTTCCTCCTTGGACTCCCTCTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048249.8 |
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CDS-3UTR CCA 90 bp | TGGAATTCTATATATTTGTTACAAATTAGGTCACACTCTCCCCAGAGGGAGTCCTGGACAGCTTGTGACTaGGGCCCACGGGGAGTTTCG | + |
Preference number: 4 (lower is better) Translates to: WNSIYLLQIRSHSPQRESWTACD*GPRGVS Trigger: CGAAACTCCCCGTGGGCCCCAGTCACAAGCTGTCCA...GGACTCCCTCTGGGGAGAGTGTGACCTAATTTGTAACAAATATATAGAATTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048249.8 ENSMUST00000173132.8 |
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CDS-3UTR CCA 90 bp | TGGAATTCTATATATTTGTTACAAATTAGGTCACACTCTCCCCAGAGGGAGTCCGCTCCCACCTCTTCATaGGAGGAGCAGGTGTCACTG | + |
Preference number: 4 (lower is better) Translates to: WNSIYLLQIRSHSPQRESAPTSS*EEQVSL Trigger: CAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGC...GGACTCCCTCTGGGGAGAGTGTGACCTAATTTGTAACAAATATATAGAATTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048249.8 |
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CDS-3UTR GCA 90 bp | TGGAATTCTATATATTTGTTACAAATTAGGTCACACTCTCCCCAGAGGGAGTCCCTTCTTCTCAGTGGCTaGCATTGCAGAACTCTCGGC | + |
Preference number: 4 (lower is better) Translates to: WNSIYLLQIRSHSPQRESLLLSG*HCRTLG Trigger: GCCGAGAGTTCTGCAATGGCAGCCACTGAGAAGAAG...GGACTCCCTCTGGGGAGAGTGTGACCTAATTTGTAACAAATATATAGAATTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048249.8 |
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CDS-3UTR CCA 90 bp | GGAATTCTATATATTTGTTACAAATTAGGTCACACTCTCCCCAGAGGGAGTCCATACAGTAGTAATTGTTaGACAGCTTGTGACTGGGGC | + |
Preference number: 4 (lower is better) Translates to: GILYICYKLGHTLPRGSPYSSNC*TACDWG Trigger: GCCCCAGTCACAAGCTGTCCAACAATTACTACTGTA...TGGACTCCCTCTGGGGAGAGTGTGACCTAATTTGTAACAAATATATAGAATTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048249.8 ENSMUST00000173132.8 |
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CDS CCA 90 bp | TGTGACTGGGGCCCACGGGGAGTTTCGGAGGTGGCTGGGTCCGCTTaGCGATCTCCTGGTAGCGCAGCTGTAGCTTCGCCTGCAGGTCTT | + |
Preference number: 5 (lower is better) Translates to: CDWGPRGVSEVAGSA*RSPGSAAVASPAGL Trigger: AAGACCTGCAGGCGAAGCTACAGCTGCGCTACCAGGAGATCGCCAAGCGGACCCAGCCACCTCCGAAACTCCCCGTGGGCCCCAGTCACA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048249.8 |
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CDS CCA 90 bp | GGCGGCCATCACGAGTACAGTAGTAATTGTTGGACAGCTTGTGACTaGGGCCCACGGGGAGTTTCGGAGGTGGCTGGGTCCGCTTGGCGA | + |
Preference number: 5 (lower is better) Translates to: GGHHEYSSNCWTACD*GPRGVSEVAGSAWR Trigger: TCGCCAAGCGGACCCAGCCACCTCCGAAACTCCCCGTGGGCCCCAGTCACAAGCTGTCCAACAATTACTACTGTACTCGTGATGGCCGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048249.8 |
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CDS CCA 90 bp | GAGGCACAACTTCCCGGCGGCCATCACGAGTACAGTAGTAATTGTTaGACAGCTTGTGACTGGGGCCCACGGGGAGTTTCGGAGGTGGCT | + |
Preference number: 5 (lower is better) Translates to: EAQLPGGHHEYSSNC*TACDWGPRGVSEVA Trigger: AGCCACCTCCGAAACTCCCCGTGGGCCCCAGTCACAAGCTGTCCAACAATTACTACTGTACTCGTGATGGCCGCCGGGAAGTTGTGCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048249.8 |
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CDS-3UTR CAA 90 bp | AGAGGGAGTCCAAGGAGGAAAAGCAGTCATGTGGCCCTAGAGACATATATAGCAAGGTATGGCTGGTCCTaGGACAGCTCCCACCTCTTC | + |
Preference number: 5 (lower is better) Translates to: RGSPRRKSSHVALETYIARYGWS*DSSHLF Trigger: GAAGAGGTGGGAGCTGTCCAAGGACCAGCCATACCT...TGCTATATATGTCTCTAGGGCCACATGACTGCTTTTCCTCCTTGGACTCCCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048249.8 |
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CDS-3UTR CAA 90 bp | TGGAATTCTATATATTTGTTACAAATTAGGTCACACTCTCCCCAGAGGGAGTCCGAACTCTCGGCGGCCTaGCCTGACACCAGGGCCTTT | + |
Preference number: 5 (lower is better) Translates to: WNSIYLLQIRSHSPQRESELSAA*PDTRAF Trigger: AAAGGCCCTGGTGTCAGGCAAGGCCGCCGAGAGTTC...GGACTCCCTCTGGGGAGAGTGTGACCTAATTTGTAACAAATATATAGAATTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048249.8 |
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CDS CCA 72 bp | GGCCCACGGGGAGTTTCGGAGGTGGCTGGGTCCGCTTaGCGATCTCCTGGTAGCGCAGCTGTAGCTTCGCCT | + |
Preference number: 6 (lower is better) Translates to: GPRGVSEVAGSA*RSPGSAAVASP Trigger: AGGCGAAGCTACAGCTGCGCTACCAGGAGATCGCCAAGCGGACCCAGCCACCTCCGAAACTCCCCGTGGGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048249.8 |
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CDS CCA 72 bp | CAGCTTGTGACTGGGGCCCACGGGGAGTTTCGGAGGTaGCTGGGTCCGCTTGGCGATCTCCTGGTAGCGCAG | + |
Preference number: 6 (lower is better) Translates to: QLVTGAHGEFRR*LGPLGDLLVAQ Trigger: CTGCGCTACCAGGAGATCGCCAAGCGGACCCAGCCACCTCCGAAACTCCCCGTGGGCCCCAGTCACAAGCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048249.8 |
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CDS CCA 72 bp | CACGAGTACAGTAGTAATTGTTGGACAGCTTGTGACTaGGGCCCACGGGGAGTTTCGGAGGTGGCTGGGTCC | + |
Preference number: 6 (lower is better) Translates to: HEYSSNCWTACD*GPRGVSEVAGS Trigger: GGACCCAGCCACCTCCGAAACTCCCCGTGGGCCCCAGTCACAAGCTGTCCAACAATTACTACTGTACTCGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048249.8 ENSMUST00000173132.8 |
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CDS CCA 72 bp | CTTCCCGGCGGCCATCACGAGTACAGTAGTAATTGTTaGACAGCTTGTGACTGGGGCCCACGGGGAGTTTCG | + |
Preference number: 6 (lower is better) Translates to: LPGGHHEYSSNC*TACDWGPRGVS Trigger: CGAAACTCCCCGTGGGCCCCAGTCACAAGCTGTCCAACAATTACTACTGTACTCGTGATGGCCGCCGGGAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048249.8 |