RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NDUFA7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041881

Ensembl transcript IDs: ENSMUST00000048249.8, ENSMUST00000173132.8

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCACCTCTTCATGGGAGGAGCAGGTGTCACTGCCTTCTTCTCAGTaGCTGCCATTGCAGAACTCTCGGCGGCCTTGCCTGACACCAGGG +
Preference number: 1 (lower is better)
Translates to: PTSSWEEQVSLPSSQ*LPLQNSRRPCLTPG
Trigger: CCCTGGTGTCAGGCAAGGCCGCCGAGAGTTCTGCAATGGCAGCCACTGAGAAGAAGGCAGTGACACCTGCTCCTCCCATGAAGAGGTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173132.8
3UTR GCA 90 bp GTCCTTGGACAGCTCCCACCTCTTCATGGGAGGAGCAGGTGTCACTaGCTTCTTCTCAGTGGCTGCCATTGCAGAACTCTCGGCGGCCTT +
Preference number: 1 (lower is better)
Translates to: VLGQLPPLHGRSRCH*LLLSGCHCRTLGGL
Trigger: AAGGCCGCCGAGAGTTCTGCAATGGCAGCCACTGAGAAGAAGGCAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGCTGTCCAAGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173132.8
3UTR CCA 90 bp AGGGTCACAGGTATGGCTGGTCCTTGGACAGCTCCCACCTCTTCATaGGAGGAGCAGGTGTCACTGCCTTCTTCTCAGTGGCTGCCATTG +
Preference number: 1 (lower is better)
Translates to: RVTGMAGPWTAPTSS*EEQVSLPSSQWLPL
Trigger: CAATGGCAGCCACTGAGAAGAAGGCAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGCTGTCCAAGGACCAGCCATACCTGTGACCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173132.8
3UTR CAA 90 bp ACTGCCTTCTTCTCAGTGGCTGCCATTGCAGAACTCTCGGCGGCCTaGCCTGACACCAGGGCCTTTTGTGAGGACATGATGATTGAGGGA +
Preference number: 2 (lower is better)
Translates to: TAFFSVAAIAELSAA*PDTRAFCEDMMIEG
Trigger: TCCCTCAATCATCATGTCCTCACAAAAGGCCCTGGTGTCAGGCAAGGCCGCCGAGAGTTCTGCAATGGCAGCCACTGAGAAGAAGGCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173132.8
3UTR-3UTR CCA 90 bp TCACACTCTCCCCAGAGGGAGTCCAAGGAGGAAAAGCAGTCATGTGGCCCTAGAGGTATGGCTGGTCCTTaGACAGCTCCCACCTCTTCA +
Preference number: 2 (lower is better)
Translates to: SHSPQRESKEEKQSCGPRGMAGP*TAPTSS
Trigger: TGAAGAGGTGGGAGCTGTCCAAGGACCAGCCATACC...TCTAGGGCCACATGACTGCTTTTCCTCCTTGGACTCCCTCTGGGGAGAGTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173132.8
3UTR CCA 72 bp TCATGGGAGGAGCAGGTGTCACTGCCTTCTTCTCAGTaGCTGCCATTGCAGAACTCTCGGCGGCCTTGCCTG +
Preference number: 3 (lower is better)
Translates to: SWEEQVSLPSSQ*LPLQNSRRPCL
Trigger: CAGGCAAGGCCGCCGAGAGTTCTGCAATGGCAGCCACTGAGAAGAAGGCAGTGACACCTGCTCCTCCCATGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173132.8
3UTR CCA 72 bp GGTATGGCTGGTCCTTGGACAGCTCCCACCTCTTCATaGGAGGAGCAGGTGTCACTGCCTTCTTCTCAGTGG +
Preference number: 3 (lower is better)
Translates to: GMAGPWTAPTSS*EEQVSLPSSQW
Trigger: CCACTGAGAAGAAGGCAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGCTGTCCAAGGACCAGCCATACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173132.8
3UTR GCA 72 bp CAGCTCCCACCTCTTCATGGGAGGAGCAGGTGTCACTaGCTTCTTCTCAGTGGCTGCCATTGCAGAACTCTC +
Preference number: 3 (lower is better)
Translates to: QLPPLHGRSRCH*LLLSGCHCRTL
Trigger: GAGAGTTCTGCAATGGCAGCCACTGAGAAGAAGGCAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173132.8
CDS-3UTR CCA 90 bp TGGTCCTTGGACAGCTCCCACCTCTTCATGGGAGGAGCAGGTGTCACTGCCTTCGGGGAGTTTCGGAGGTaGCTGGGTCCCCAGACGCCC +
Preference number: 4 (lower is better)
Translates to: WSLDSSHLFMGGAGVTAFGEFRR*LGPQTP
Trigger: GGGCGTCTGGGGACCCAGCCACCTCCGAAACTCCCC...GAAGGCAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGCTGTCCAAGGACCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173132.8
3UTR CAA 72 bp GAGCAGGTGTCACTGCCTTCTTCTCAGTGGCTGCCATaGCAGAACTCTCGGCGGCCTTGCCTGACACCAGGG +
Preference number: 4 (lower is better)
Translates to: EQVSLPSSQWLP*QNSRRPCLTPG
Trigger: CCCTGGTGTCAGGCAAGGCCGCCGAGAGTTCTGCAATGGCAGCCACTGAGAAGAAGGCAGTGACACCTGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173132.8
CDS-3UTR CCA 90 bp TGGTCCTTGGACAGCTCCCACCTCTTCATGGGAGGAGCAGGTGTCACTGCCTTCTGGACAGCTTGTGACTaGGGCCCACGGGGAGTTTCG +
Preference number: 4 (lower is better)
Translates to: WSLDSSHLFMGGAGVTAFWTACD*GPRGVS
Trigger: CGAAACTCCCCGTGGGCCCCAGTCACAAGCTGTCCA...GAAGGCAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGCTGTCCAAGGACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173132.8
CDS-3UTR CCA 90 bp CCCCAGAGGGAGTCCAAGGAGGAAAAGCAGTCATGTGGCCCTAGAGACATATATGTGGCTGGGTCCGCTTaGCGATCTCCTGGTAGCGCA +
Preference number: 4 (lower is better)
Translates to: PQRESKEEKQSCGPRDIYVAGSA*RSPGSA
Trigger: TGCGCTACCAGGAGATCGCCAAGCGGACCCAGCCAC...ATATATGTCTCTAGGGCCACATGACTGCTTTTCCTCCTTGGACTCCCTCTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048249.8
3UTR CAA 72 bp TTCTCAGTGGCTGCCATTGCAGAACTCTCGGCGGCCTaGCCTGACACCAGGGCCTTTTGTGAGGACATGATG +
Preference number: 4 (lower is better)
Translates to: FSVAAIAELSAA*PDTRAFCEDMM
Trigger: CATCATGTCCTCACAAAAGGCCCTGGTGTCAGGCAAGGCCGCCGAGAGTTCTGCAATGGCAGCCACTGAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173132.8
CDS-3UTR CCA 90 bp TGGCTGGTCCTTGGACAGCTCCCACCTCTTCATGGGAGGAGCAGGTGTCACTGCTACAGTAGTAATTGTTaGACAGCTTGTGACTGGGGC +
Preference number: 4 (lower is better)
Translates to: WLVLGQLPPLHGRSRCHCYSSNC*TACDWG
Trigger: GCCCCAGTCACAAGCTGTCCAACAATTACTACTGTA...GCAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGCTGTCCAAGGACCAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173132.8
CDS-3UTR GCA 90 bp AGAGGGAGTCCAAGGAGGAAAAGCAGTCATGTGGCCCTAGAGACATATATAGCAAACTCTCGGCGGCCTTaGCTGACACCAGGGCCTTTT +
Preference number: 4 (lower is better)
Translates to: RGSPRRKSSHVALETYIANSRRP*LTPGPF
Trigger: AAAAGGCCCTGGTGTCAGGCAAGGCCGCCGAGAGTT...TGCTATATATGTCTCTAGGGCCACATGACTGCTTTTCCTCCTTGGACTCCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048249.8
CDS-3UTR GCA 90 bp CCCAGAGGGAGTCCAAGGAGGAAAAGCAGTCATGTGGCCCTAGAGACATATATAAGGAGCAGGTGTCACTaGCTTCTTCTCAGTGGCTGC +
Preference number: 4 (lower is better)
Translates to: PRGSPRRKSSHVALETYIRSRCH*LLLSGC
Trigger: GCAGCCACTGAGAAGAAGGCAGTGACACCTGCTCCT...TATATATGTCTCTAGGGCCACATGACTGCTTTTCCTCCTTGGACTCCCTCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048249.8
CDS-3UTR CCA 90 bp TGGAATTCTATATATTTGTTACAAATTAGGTCACACTCTCCCCAGAGGGAGTCCTGGACAGCTTGTGACTaGGGCCCACGGGGAGTTTCG +
Preference number: 4 (lower is better)
Translates to: WNSIYLLQIRSHSPQRESWTACD*GPRGVS
Trigger: CGAAACTCCCCGTGGGCCCCAGTCACAAGCTGTCCA...GGACTCCCTCTGGGGAGAGTGTGACCTAATTTGTAACAAATATATAGAATTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048249.8
ENSMUST00000173132.8
CDS-3UTR CCA 90 bp TGGAATTCTATATATTTGTTACAAATTAGGTCACACTCTCCCCAGAGGGAGTCCGCTCCCACCTCTTCATaGGAGGAGCAGGTGTCACTG +
Preference number: 4 (lower is better)
Translates to: WNSIYLLQIRSHSPQRESAPTSS*EEQVSL
Trigger: CAGTGACACCTGCTCCTCCCATGAAGAGGTGGGAGC...GGACTCCCTCTGGGGAGAGTGTGACCTAATTTGTAACAAATATATAGAATTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048249.8
CDS-3UTR GCA 90 bp TGGAATTCTATATATTTGTTACAAATTAGGTCACACTCTCCCCAGAGGGAGTCCCTTCTTCTCAGTGGCTaGCATTGCAGAACTCTCGGC +
Preference number: 4 (lower is better)
Translates to: WNSIYLLQIRSHSPQRESLLLSG*HCRTLG
Trigger: GCCGAGAGTTCTGCAATGGCAGCCACTGAGAAGAAG...GGACTCCCTCTGGGGAGAGTGTGACCTAATTTGTAACAAATATATAGAATTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048249.8
CDS-3UTR CCA 90 bp GGAATTCTATATATTTGTTACAAATTAGGTCACACTCTCCCCAGAGGGAGTCCATACAGTAGTAATTGTTaGACAGCTTGTGACTGGGGC +
Preference number: 4 (lower is better)
Translates to: GILYICYKLGHTLPRGSPYSSNC*TACDWG
Trigger: GCCCCAGTCACAAGCTGTCCAACAATTACTACTGTA...TGGACTCCCTCTGGGGAGAGTGTGACCTAATTTGTAACAAATATATAGAATTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048249.8
ENSMUST00000173132.8
CDS CCA 90 bp TGTGACTGGGGCCCACGGGGAGTTTCGGAGGTGGCTGGGTCCGCTTaGCGATCTCCTGGTAGCGCAGCTGTAGCTTCGCCTGCAGGTCTT +
Preference number: 5 (lower is better)
Translates to: CDWGPRGVSEVAGSA*RSPGSAAVASPAGL
Trigger: AAGACCTGCAGGCGAAGCTACAGCTGCGCTACCAGGAGATCGCCAAGCGGACCCAGCCACCTCCGAAACTCCCCGTGGGCCCCAGTCACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048249.8
CDS CCA 90 bp GGCGGCCATCACGAGTACAGTAGTAATTGTTGGACAGCTTGTGACTaGGGCCCACGGGGAGTTTCGGAGGTGGCTGGGTCCGCTTGGCGA +
Preference number: 5 (lower is better)
Translates to: GGHHEYSSNCWTACD*GPRGVSEVAGSAWR
Trigger: TCGCCAAGCGGACCCAGCCACCTCCGAAACTCCCCGTGGGCCCCAGTCACAAGCTGTCCAACAATTACTACTGTACTCGTGATGGCCGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048249.8
CDS CCA 90 bp GAGGCACAACTTCCCGGCGGCCATCACGAGTACAGTAGTAATTGTTaGACAGCTTGTGACTGGGGCCCACGGGGAGTTTCGGAGGTGGCT +
Preference number: 5 (lower is better)
Translates to: EAQLPGGHHEYSSNC*TACDWGPRGVSEVA
Trigger: AGCCACCTCCGAAACTCCCCGTGGGCCCCAGTCACAAGCTGTCCAACAATTACTACTGTACTCGTGATGGCCGCCGGGAAGTTGTGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048249.8
CDS-3UTR CAA 90 bp AGAGGGAGTCCAAGGAGGAAAAGCAGTCATGTGGCCCTAGAGACATATATAGCAAGGTATGGCTGGTCCTaGGACAGCTCCCACCTCTTC +
Preference number: 5 (lower is better)
Translates to: RGSPRRKSSHVALETYIARYGWS*DSSHLF
Trigger: GAAGAGGTGGGAGCTGTCCAAGGACCAGCCATACCT...TGCTATATATGTCTCTAGGGCCACATGACTGCTTTTCCTCCTTGGACTCCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048249.8
CDS-3UTR CAA 90 bp TGGAATTCTATATATTTGTTACAAATTAGGTCACACTCTCCCCAGAGGGAGTCCGAACTCTCGGCGGCCTaGCCTGACACCAGGGCCTTT +
Preference number: 5 (lower is better)
Translates to: WNSIYLLQIRSHSPQRESELSAA*PDTRAF
Trigger: AAAGGCCCTGGTGTCAGGCAAGGCCGCCGAGAGTTC...GGACTCCCTCTGGGGAGAGTGTGACCTAATTTGTAACAAATATATAGAATTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048249.8
CDS CCA 72 bp GGCCCACGGGGAGTTTCGGAGGTGGCTGGGTCCGCTTaGCGATCTCCTGGTAGCGCAGCTGTAGCTTCGCCT +
Preference number: 6 (lower is better)
Translates to: GPRGVSEVAGSA*RSPGSAAVASP
Trigger: AGGCGAAGCTACAGCTGCGCTACCAGGAGATCGCCAAGCGGACCCAGCCACCTCCGAAACTCCCCGTGGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048249.8
CDS CCA 72 bp CAGCTTGTGACTGGGGCCCACGGGGAGTTTCGGAGGTaGCTGGGTCCGCTTGGCGATCTCCTGGTAGCGCAG +
Preference number: 6 (lower is better)
Translates to: QLVTGAHGEFRR*LGPLGDLLVAQ
Trigger: CTGCGCTACCAGGAGATCGCCAAGCGGACCCAGCCACCTCCGAAACTCCCCGTGGGCCCCAGTCACAAGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048249.8
CDS CCA 72 bp CACGAGTACAGTAGTAATTGTTGGACAGCTTGTGACTaGGGCCCACGGGGAGTTTCGGAGGTGGCTGGGTCC +
Preference number: 6 (lower is better)
Translates to: HEYSSNCWTACD*GPRGVSEVAGS
Trigger: GGACCCAGCCACCTCCGAAACTCCCCGTGGGCCCCAGTCACAAGCTGTCCAACAATTACTACTGTACTCGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048249.8
ENSMUST00000173132.8
CDS CCA 72 bp CTTCCCGGCGGCCATCACGAGTACAGTAGTAATTGTTaGACAGCTTGTGACTGGGGCCCACGGGGAGTTTCG +
Preference number: 6 (lower is better)
Translates to: LPGGHHEYSSNC*TACDWGPRGVS
Trigger: CGAAACTCCCCGTGGGCCCCAGTCACAAGCTGTCCAACAATTACTACTGTACTCGTGATGGCCGCCGGGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048249.8