RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NDUFA6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022450

Ensembl transcript IDs: ENSMUST00000023085.7, ENSMUST00000229537.2, ENSMUST00000230494.2

Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATTTCTCGGACTTTATCCCGTCCTTGTTTCACCGTGATATCCAGCTaGATTAAGTGCACTTGTGCACTGGCCATTCTTGTGACATGTCCA +
Preference number: 1 (lower is better)
Translates to: ISRTLSRPCFTVISS*IKCTCALAILVTCP
Trigger: TGGACATGTCACAAGAATGGCCAGTGCACAAGTGCACTTAATGCAGCTGGATATCACGGTGAAACAAGGACGGGATAAAGTCCGAGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229537.2
3UTR CCA 90 bp TTTCCCTTAATGACCAGCAGATCAACCACTCTGGGGTCTGTGACATaGGCATTCTTCATGAACATTTCTCGGACTTTATCCCGTCCTTGT +
Preference number: 1 (lower is better)
Translates to: FPLMTSRSTTLGSVT*AFFMNISRTLSRPC
Trigger: ACAAGGACGGGATAAAGTCCGAGAAATGTTCATGAAGAATGCCCATGTCACAGACCCCAGAGTGGTTGATCTGCTGGTCATTAAGGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229537.2
3UTR GCA 90 bp CTTGGTGTTTCTGTTTCATGGAAAAACCGCATAACGTGTGTCCGCTaGTTCCATACTTTGATGGTTTCCTGGAGCTCCATCTTTCCCTTA +
Preference number: 1 (lower is better)
Translates to: LGVSVSWKNRITCVR*FHTLMVSWSSIFPL
Trigger: TAAGGGAAAGATGGAGCTCCAGGAAACCATCAAAGTATGGAAGCAGCGGACACACGTTATGCGGTTTTTCCATGAAACAGAAACACCAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229537.2
3UTR-3UTR TCA 90 bp CGCATAACGTGTGTCCGCTGCTTCCATACTTTGATGGTTTCCTGGAGCTCCATCCACCTTCCCATCAGGTaGCCTCATGGGTCATGGCCC +
Preference number: 2 (lower is better)
Translates to: RITCVRCFHTLMVSWSSIHLPIR*PHGSWP
Trigger: GGGCCATGACCCATGAGGTCACCTGATGGGAAGGTG...GATGGAGCTCCAGGAAACCATCAAAGTATGGAAGCAGCGGACACACGTTATGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229537.2
3UTR CAA 90 bp GTTTCATGGAAAAACCGCATAACGTGTGTCCGCTGCTTCCATACTTaGATGGTTTCCTGGAGCTCCATCTTTCCCTTAATGACCAGCAGA +
Preference number: 2 (lower is better)
Translates to: VSWKNRITCVRCFHT*MVSWSSIFPLMTSR
Trigger: TCTGCTGGTCATTAAGGGAAAGATGGAGCTCCAGGAAACCATCAAAGTATGGAAGCAGCGGACACACGTTATGCGGTTTTTCCATGAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229537.2
3UTR CCA 72 bp ACGTGTGTCCGCTGCTTCCATACTTTGATGGTTTCCTaGAGCTCCATCTTTCCCTTAATGACCAGCAGATCA +
Preference number: 3 (lower is better)
Translates to: TCVRCFHTLMVS*SSIFPLMTSRS
Trigger: TGATCTGCTGGTCATTAAGGGAAAGATGGAGCTCCAGGAAACCATCAAAGTATGGAAGCAGCGGACACACGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229537.2
3UTR GCA 72 bp ACTTTATCCCGTCCTTGTTTCACCGTGATATCCAGCTaGATTAAGTGCACTTGTGCACTGGCCATTCTTGTG +
Preference number: 3 (lower is better)
Translates to: TLSRPCFTVISS*IKCTCALAILV
Trigger: CACAAGAATGGCCAGTGCACAAGTGCACTTAATGCAGCTGGATATCACGGTGAAACAAGGACGGGATAAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229537.2
3UTR GCA 72 bp TCTGTTTCATGGAAAAACCGCATAACGTGTGTCCGCTaGTTCCATACTTTGATGGTTTCCTGGAGCTCCATC +
Preference number: 3 (lower is better)
Translates to: SVSWKNRITCVR*FHTLMVSWSSI
Trigger: GATGGAGCTCCAGGAAACCATCAAAGTATGGAAGCAGCGGACACACGTTATGCGGTTTTTCCATGAAACAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229537.2
3UTR-3UTR CAA 90 bp GTTTCATGGAAAAACCGCATAACGTGTGTCCGCTGCTTCCATACTTTGATGGTTGACTTTATCCCGTCCTaGTTTCACCGTGATATCCAG +
Preference number: 3 (lower is better)
Translates to: VSWKNRITCVRCFHTLMVDFIPS*FHRDIQ
Trigger: CTGGATATCACGGTGAAACAAGGACGGGATAAAGTC...AACCATCAAAGTATGGAAGCAGCGGACACACGTTATGCGGTTTTTCCATGAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229537.2
CDS-3UTR CCA 90 bp GTTTCATGGAAAAACCGCATAACGTGTGTCCGCTGCTTCCATACTTTGATGGTTCGCGCACCCTCCGCTTaGCCTCGTTCAGGTCGCGAC +
Preference number: 4 (lower is better)
Translates to: VSWKNRITCVRCFHTLMVRAPSA*PRSGRD
Trigger: GTCGCGACCTGAACGAGGCCAAGCGGAGGGTGCGCG...AACCATCAAAGTATGGAAGCAGCGGACACACGTTATGCGGTTTTTCCATGAAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229537.2
CDS-3UTR TCA 90 bp TGGCCTTGGTGTTTCTGTTTCATGGAAAAACCGCATAACGTGTGTCCGCTGCTTCGTTCAGGTCGCGACTaGAAATGGGCTTCACCGAGG +
Preference number: 4 (lower is better)
Translates to: WPWCFCFMEKPHNVCPLLRSGRD*KWASPR
Trigger: CCTCGGTGAAGCCCATTTTCAGTCGCGACCTGAACG...AAGCAGCGGACACACGTTATGCGGTTTTTCCATGAAACAGAAACACCAAGGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229537.2
3UTR CAA 72 bp AAAAACCGCATAACGTGTGTCCGCTGCTTCCATACTTaGATGGTTTCCTGGAGCTCCATCTTTCCCTTAATG +
Preference number: 4 (lower is better)
Translates to: KNRITCVRCFHT*MVSWSSIFPLM
Trigger: CATTAAGGGAAAGATGGAGCTCCAGGAAACCATCAAAGTATGGAAGCAGCGGACACACGTTATGCGGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229537.2
CDS GCA 90 bp CTCGTTCAGGTCGCGACTGAAAATGGGCTTCACCGAGGTACTGGCTaGCGCAGCAGCAGCTTGGCGCAGGCCGGTGGCCGCGGCCGCCAT +
Preference number: 5 (lower is better)
Translates to: LVQVATENGLHRGTG*RSSSLAQAGGRGRH
Trigger: ATGGCGGCCGCGGCCACCGGCCTGCGCCAAGCTGCTGCTGCGGCAGCCAGTACCTCGGTGAAGCCCATTTTCAGTCGCGACCTGAACGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023085.7
ENSMUST00000230494.2
CDS TCA 90 bp GGTAGAGCTCGCGCACCCTCCGCTTGGCCTCGTTCAGGTCGCGACTaGAAATGGGCTTCACCGAGGTACTGGCTGCCGCAGCAGCAGCTT +
Preference number: 5 (lower is better)
Translates to: GRARAPSAWPRSGRD*KWASPRYWLPQQQL
Trigger: AAGCTGCTGCTGCGGCAGCCAGTACCTCGGTGAAGCCCATTTTCAGTCGCGACCTGAACGAGGCCAAGCGGAGGGTGCGCGAGCTCTACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023085.7
ENSMUST00000230494.2
CDS-3UTR CAA 90 bp TTTGGCCTTGGTGTTTCTGTTTCATGGAAAAACCGCATAACGTGTGTCCGCTGCTCGCGCACCCTCCGCTaGGCCTCGTTCAGGTCGCGA +
Preference number: 5 (lower is better)
Translates to: FGLGVSVSWKNRITCVRCSRTLR*ASFRSR
Trigger: TCGCGACCTGAACGAGGCCAAGCGGAGGGTGCGCGA...GCAGCGGACACACGTTATGCGGTTTTTCCATGAAACAGAAACACCAAGGCCAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229537.2
CDS-3UTR CAA 90 bp TCTCGGACTTTATCCCGTCCTTGTTTCACCGTGATATCCAGCTGCATTAAGTGCCCTTTAATCCCAGAATaGAGGCAAAACCGGTGTTCG +
Preference number: 5 (lower is better)
Translates to: SRTLSRPCFTVISSCIKCPLIPE*RQNRCS
Trigger: CGAACACCGGTTTTGCCTCAATTCTGGGATTAAAGG...GCACTTAATGCAGCTGGATATCACGGTGAAACAAGGACGGGATAAAGTCCGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229537.2
CDS GCA 72 bp GTCGCGACTGAAAATGGGCTTCACCGAGGTACTGGCTaGCGCAGCAGCAGCTTGGCGCAGGCCGGTGGCCGC +
Preference number: 6 (lower is better)
Translates to: VATENGLHRGTG*RSSSLAQAGGR
Trigger: GCGGCCACCGGCCTGCGCCAAGCTGCTGCTGCGGCAGCCAGTACCTCGGTGAAGCCCATTTTCAGTCGCGAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023085.7
ENSMUST00000230494.2
CDS TCA 72 bp CGCGCACCCTCCGCTTGGCCTCGTTCAGGTCGCGACTaGAAATGGGCTTCACCGAGGTACTGGCTGCCGCAG +
Preference number: 6 (lower is better)
Translates to: RAPSAWPRSGRD*KWASPRYWLPQ
Trigger: CTGCGGCAGCCAGTACCTCGGTGAAGCCCATTTTCAGTCGCGACCTGAACGAGGCCAAGCGGAGGGTGCGCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023085.7
ENSMUST00000230494.2
CDS GCA 72 bp CGTCCTTGTTTCACCGTGATATCCAGCTGCATTAAGTaGACGGTGTTCGGCACCTCCCGATACCAAGCGCGG +
Preference number: 6 (lower is better)
Translates to: RPCFTVISSCIK*TVFGTSRYQAR
Trigger: CCGCGCTTGGTATCGGGAGGTGCCGAACACCGTGCACTTAATGCAGCTGGATATCACGGTGAAACAAGGACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023085.7
CDS CCA 72 bp ACGTGTGTCCGCTGCTTCCATACTTTGATGGTTTCCTaGAGCTCCATCTTTCCCGGTGTTCGGCACCTCCCG +
Preference number: 6 (lower is better)
Translates to: TCVRCFHTLMVS*SSIFPGVRHLP
Trigger: CGGGAGGTGCCGAACACCGGGAAAGATGGAGCTCCAGGAAACCATCAAAGTATGGAAGCAGCGGACACACGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230494.2
CDS GCA 72 bp ACTTTATCCCGTCCTTGTTTCACCGTGATATCCAGCTaGATTAAGTGCACGGTGTTCGGCACCTCCCGATAC +
Preference number: 6 (lower is better)
Translates to: TLSRPCFTVISS*IKCTVFGTSRY
Trigger: GTATCGGGAGGTGCCGAACACCGTGCACTTAATGCAGCTGGATATCACGGTGAAACAAGGACGGGATAAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023085.7
CDS TCA 72 bp ACATTTCTCGGACTTTATCCCGTCCTTGTTTCACCGTaGTATCCAGCTGCATTAAGTGCACGGTGTTCGGCA +
Preference number: 6 (lower is better)
Translates to: TFLGLYPVLVSP*YPAALSARCSA
Trigger: TGCCGAACACCGTGCACTTAATGCAGCTGGATATCACGGTGAAACAAGGACGGGATAAAGTCCGAGAAATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023085.7
CDS CAA 72 bp AAAAACCGCATAACGTGTGTCCGCTGCTTCCATACTTaGATGGTTTCCTGGAGCTCCATCTTTCCCGGTGTT +
Preference number: 6 (lower is better)
Translates to: KNRITCVRCFHT*MVSWSSIFPGV
Trigger: AACACCGGGAAAGATGGAGCTCCAGGAAACCATCAAAGTATGGAAGCAGCGGACACACGTTATGCGGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230494.2