Pregenerated sensors for NDUFA4L2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040280Ensembl transcript IDs: ENSMUST00000035735.11
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAAAGGCACAAGACTGCCCAGGTGCAAGGCGGGAGGGCTGTCCTTaGCCGGAGGCTGCCGGCTTGGGCAGGGAAGAAGCCCACTGCATG | + |
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Preference number: 1 (lower is better) Translates to: GKAQDCPGARREGCP*PEAAGLGREEAHCM Trigger: CATGCAGTGGGCTTCTTCCCTGCCCAAGCCGGCAGCCTCCGGTCAAGGACAGCCCTCCCGCCTTGCACCTGGGCAGTCTTGTGCCTTTCC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR CCA 90 bp | CCCATCCGAGTCAGGCTGGGAACCCAGGACGAGCCCAGTCGAGCCTaGGCAGACACCGCCCTGAACCCTGCTCAAAACTCTGTCAAAACA | + |
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Preference number: 1 (lower is better) Translates to: PIRVRLGTQDEPSRA*ADTALNPAQNSVKT Trigger: TGTTTTGACAGAGTTTTGAGCAGGGTTCAGGGCGGTGTCTGCCCAGGCTCGACTGGGCTCGTCCTGGGTTCCCAGCCTGACTCGGATGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR CAA 90 bp | AAACAAACGTGGGGCCTGCCACGTCCCTGGCACTCGGGCCCCTGCTaGCTGCTGGCACACGTCGGACACGCTCAACACGTAGCCTGCGCC | + |
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Preference number: 2 (lower is better) Translates to: KQTWGLPRPWHSGPC*LLAHVGHAQHVACA Trigger: GGCGCAGGCTACGTGTTGAGCGTGTCCGACGTGTGCCAGCAGCAAGCAGGGGCCCGAGTGCCAGGGACGTGGCAGGCCCCACGTTTGTTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR-3UTR CCA 90 bp | CGGCTTGGGCAGGGAAGAAGCCCACTGCATGGCAGAGATACCCCATCCGAGTCAGGCCTGCCACGTCCCTaGCACTCGGGCCCCTGCTTG | + |
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Preference number: 2 (lower is better) Translates to: RLGQGRSPLHGRDTPSESGLPRP*HSGPCL Trigger: CAAGCAGGGGCCCGAGTGCCAGGGACGTGGCAGGCC...TGACTCGGATGGGGTATCTCTGCCATGCAGTGGGCTTCTTCCCTGCCCAAGCCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR-3UTR CCA 90 bp | ACCGGAGGCTGCCGGCTTGGGCAGGGAAGAAGCCCACTGCATGGCAGAGATACCGAGCCCAGTCGAGCCTaGGCAGACACCGCCCTGAAC | + |
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Preference number: 2 (lower is better) Translates to: TGGCRLGQGRSPLHGRDTEPSRA*ADTALN Trigger: GTTCAGGGCGGTGTCTGCCCAGGCTCGACTGGGCTC...GGTATCTCTGCCATGCAGTGGGCTTCTTCCCTGCCCAAGCCGGCAGCCTCCGGT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR-3UTR CCA 90 bp | AGGCTGCCGGCTTGGGCAGGGAAGAAGCCCACTGCATGGCAGAGATACCCCATCGCCCCTGCTTGCTGCTaGCACACGTCGGACACGCTC | + |
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Preference number: 2 (lower is better) Translates to: RLPAWAGKKPTAWQRYPIAPACC*HTSDTL Trigger: GAGCGTGTCCGACGTGTGCCAGCAGCAAGCAGGGGC...GATGGGGTATCTCTGCCATGCAGTGGGCTTCTTCCCTGCCCAAGCCGGCAGCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR-3UTR CCA 90 bp | CCCATCCGAGTCAGGCTGGGAACCCAGGACGAGCCCAGTCGAGCCTGGGCAGACCTGTCAAAACAAACGTaGGGCCTGCCACGTCCCTGG | + |
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Preference number: 2 (lower is better) Translates to: PIRVRLGTQDEPSRAWADLSKQT*GLPRPW Trigger: CCAGGGACGTGGCAGGCCCCACGTTTGTTTTGACAG...GTCTGCCCAGGCTCGACTGGGCTCGTCCTGGGTTCCCAGCCTGACTCGGATGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR-3UTR GCA 90 bp | CATGGCAGAGATACCCCATCCGAGTCAGGCTGGGAACCCAGGACGAGCCCAGTCGCTCAACACGTAGCCTaGGCCACACCCAGTCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: HGRDTPSESGWEPRTSPVAQHVA*ATPSQE Trigger: CTCCTGACTGGGTGTGGCGCAGGCTACGTGTTGAGC...GACTGGGCTCGTCCTGGGTTCCCAGCCTGACTCGGATGGGGTATCTCTGCCATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR-3UTR CCA 90 bp | CAGGACGAGCCCAGTCGAGCCTGGGCAGACACCGCCCTGAACCCTGCTCAAAACCCTTTAAGCAGAAGCTaGACTGATGCTGCTAGACAG | + |
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Preference number: 2 (lower is better) Translates to: QDEPSRAWADTALNPAQNPLSRS*TDAARQ Trigger: CTGTCTAGCAGCATCAGTCCAGCTTCTGCTTAAAGG...GTTTTGAGCAGGGTTCAGGGCGGTGTCTGCCCAGGCTCGACTGGGCTCGTCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR-3UTR CCA 90 bp | TTAAATGAAATTGTATTTTGCCCACGGCTGCTTCTGTTTGATCCCCAGGGACAGGGCTTTTTCCTCTCCTaGGAGCAAGGGAGGCGGGTG | + |
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Preference number: 2 (lower is better) Translates to: LNEIVFCPRLLLFDPQGQGFFLS*EQGRRV Trigger: CACCCGCCTCCCTTGCTCCCAGGAGAGGAAAAAGCC...CTGTCCCTGGGGATCAAACAGAAGCAGCCGTGGGCAAAATACAATTTCATTTAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR GCA 72 bp | ACGTGGGGCCTGCCACGTCCCTGGCACTCGGGCCCCTaGTTGCTGCTGGCACACGTCGGACACGCTCAACAC | + |
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Preference number: 3 (lower is better) Translates to: TWGLPRPWHSGP*LLLAHVGHAQH Trigger: GTGTTGAGCGTGTCCGACGTGTGCCAGCAGCAAGCAGGGGCCCGAGTGCCAGGGACGTGGCAGGCCCCACGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR TCA 72 bp | CAAGACTGCCCAGGTGCAAGGCGGGAGGGCTGTCCTTaGCCGGAGGCTGCCGGCTTGGGCAGGGAAGAAGCC | + |
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Preference number: 3 (lower is better) Translates to: QDCPGARREGCP*PEAAGLGREEA Trigger: GGCTTCTTCCCTGCCCAAGCCGGCAGCCTCCGGTCAAGGACAGCCCTCCCGCCTTGCACCTGGGCAGTCTTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR GCA 72 bp | AGGTGCAAGGCGGGAGGGCTGTCCTTGACCGGAGGCTaGCGGCTTGGGCAGGGAAGAAGCCCACTGCATGGC | + |
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Preference number: 3 (lower is better) Translates to: RCKAGGLSLTGG*RLGQGRSPLHG Trigger: GCCATGCAGTGGGCTTCTTCCCTGCCCAAGCCGGCAGCCTCCGGTCAAGGACAGCCCTCCCGCCTTGCACCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR CCA 72 bp | GGCGGGAGGGCTGTCCTTGACCGGAGGCTGCCGGCTTaGGCAGGGAAGAAGCCCACTGCATGGCAGAGATAC | + |
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Preference number: 3 (lower is better) Translates to: GGRAVLDRRLPA*AGKKPTAWQRY Trigger: GTATCTCTGCCATGCAGTGGGCTTCTTCCCTGCCCAAGCCGGCAGCCTCCGGTCAAGGACAGCCCTCCCGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR CCA 72 bp | CCACTGCATGGCAGAGATACCCCATCCGAGTCAGGCTaGGAACCCAGGACGAGCCCAGTCGAGCCTGGGCAG | + |
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Preference number: 3 (lower is better) Translates to: PLHGRDTPSESG*EPRTSPVEPGQ Trigger: CTGCCCAGGCTCGACTGGGCTCGTCCTGGGTTCCCAGCCTGACTCGGATGGGGTATCTCTGCCATGCAGTGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR CCA 72 bp | GTCAGGCTGGGAACCCAGGACGAGCCCAGTCGAGCCTaGGCAGACACCGCCCTGAACCCTGCTCAAAACTCT | + |
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Preference number: 3 (lower is better) Translates to: VRLGTQDEPSRA*ADTALNPAQNS Trigger: AGAGTTTTGAGCAGGGTTCAGGGCGGTGTCTGCCCAGGCTCGACTGGGCTCGTCCTGGGTTCCCAGCCTGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR-3UTR CAA 90 bp | CGTCGGACACGCTCAACACGTAGCCTGCGCCACACCCAGTCAGGAGGAGCAGGGGACTGGCTTGGGTTTTaGGGTCAACCCCAACTGTCG | + |
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Preference number: 3 (lower is better) Translates to: RRTRSTRSLRHTQSGGAGDWLGF*GQPQLS Trigger: CGACAGTTGGGGTTGACCCAAAAACCCAAGCCAGTC...CCCTGCTCCTCCTGACTGGGTGTGGCGCAGGCTACGTGTTGAGCGTGTCCGACG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR-3UTR CAA 90 bp | CCGGCTTGGGCAGGGAAGAAGCCCACTGCATGGCAGAGATACCCCATCCGAGTCGAGAGGGGGACTGGCTaGGGTTTTTGGGTCAACCCC | + |
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Preference number: 3 (lower is better) Translates to: PAWAGKKPTAWQRYPIRVERGTG*GFWVNP Trigger: GGGGTTGACCCAAAAACCCAAGCCAGTCCCCCTCTC...GACTCGGATGGGGTATCTCTGCCATGCAGTGGGCTTCTTCCCTGCCCAAGCCGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| 3UTR CAA 72 bp | ACAAGACTGCCCAGGTGCAAGGCGGGAGGGCTGTCCTaGACCGGAGGCTGCCGGCTTGGGCAGGGAAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: TRLPRCKAGGLS*TGGCRLGQGRS Trigger: GCTTCTTCCCTGCCCAAGCCGGCAGCCTCCGGTCAAGGACAGCCCTCCCGCCTTGCACCTGGGCAGTCTTGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| CDS-3UTR GCA 90 bp | CATGGCAGAGATACCCCATCCGAGTCAGGCTGGGAACCCAGGACGAGCCCAGTCAGCAGACATCAGGACTaGGCAGGGCAAGTCGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: HGRDTPSESGWEPRTSPVSRHQD*AGQVAA Trigger: TGCTGCGACTTGCCCTGCGCAGTCCTGATGTCTGCT...GACTGGGCTCGTCCTGGGTTCCCAGCCTGACTCGGATGGGGTATCTCTGCCATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| CDS-3UTR CCA 90 bp | CGGCTTGGGCAGGGAAGAAGCCCACTGCATGGCAGAGATACCCCATCCGAGTCAACTTGTACTGGTCATTaGGACTCAGGCGGTTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: RLGQGRSPLHGRDTPSESTCTGH*DSGGSR Trigger: CCTGGAACCGCCTGAGTCCCAATGACCAGTACAAGT...TGACTCGGATGGGGTATCTCTGCCATGCAGTGGGCTTCTTCCCTGCCCAAGCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| CDS-3UTR CAA 90 bp | AGCCTGGGCAGACACCGCCCTGAACCCTGCTCAAAACTCTGTCAAAACAAACGTAACTTGTACTGGTCATaGGGACTCAGGCGGTTCCAG | + |
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Preference number: 5 (lower is better) Translates to: SLGRHRPEPCSKLCQNKRNLYWS*GLRRFQ Trigger: CTGGAACCGCCTGAGTCCCAATGACCAGTACAAGTT...ACGTTTGTTTTGACAGAGTTTTGAGCAGGGTTCAGGGCGGTGTCTGCCCAGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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| CDS CCA 72 bp | GGCACTGCCCATGCCCAAGCAGATGAAGCCAATCATTaGGATGAGCCCAGGGTGTCTTTTTATCTGCCGGTA | + |
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Preference number: 6 (lower is better) Translates to: GTAHAQADEANH*DEPRVSFYLPV Trigger: TACCGGCAGATAAAAAGACACCCTGGGCTCATCCCAATGATTGGCTTCATCTGCTTGGGCATGGGCAGTGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035735.11 |
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