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Pregenerated sensors for NDUFA3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035674

Ensembl transcript IDs: ENSMUST00000076657.11, ENSMUST00000108644.8, ENSMUST00000134683.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp GGGGCTAATCATGGGCATAATTATAGATTAGAGCATTCTAGGTCTTaGAAAGTCAGGGTGGTAGATAGCTGGTGGTGGGTTTTAGAACTT +
Preference number: 2 (lower is better)
Translates to: GANHGHNYRLEHSRS*KVRVVDSWWWVLEL
Trigger: AAGTTCTAAAACCCACCACCAGCTATCTACCACCCTGACTTTCAAAGACCTAGAATGCTCTAATCTATAATTATGCCCATGATTAGCCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000134683.2
3UTR-3UTR TCA 90 bp TCTAGGTCTTTGAAAGTCAGGGTGGTAGATAGCTGGTGGTGGGTTTTAGAACTTCCCAGACTTTCAGAATaGAAATTTAACAGGTCACCT +
Preference number: 2 (lower is better)
Translates to: SRSLKVRVVDSWWWVLELPRLSE*KFNRSP
Trigger: AGGTGACCTGTTAAATTTTCATTCTGAAAGTCTGGG...AAGTTCTAAAACCCACCACCAGCTATCTACCACCCTGACTTTCAAAGACCTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134683.2
3UTR CAA 90 bp TACACACTGAATTCCAGGTCTGCCTACACTACATATGAGACTTCCTaGTCTCACAACAACAAAAGAAACCCACGAAAGAAAAGATTGTGG +
Preference number: 2 (lower is better)
Translates to: YTLNSRSAYTTYETS*SHNNKRNPRKKRLW
Trigger: CCACAATCTTTTCTTTCGTGGGTTTCTTTTGTTGTTGTGAGACAAGGAAGTCTCATATGTAGTGTAGGCAGACCTGGAATTCAGTGTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076657.11
3UTR TCA 72 bp CACTCCAGGCCAGCAATACTGACAATTTTGGTACTGTaGTGGCTGCCAAATCCAAGGCCTCACCCCAGACTT +
Preference number: 3 (lower is better)
Translates to: HSRPAILTILVL*WLPNPRPHPRL
Trigger: AAGTCTGGGGTGAGGCCTTGGATTTGGCAGCCATCACAGTACCAAAATTGTCAGTATTGCTGGCCTGGAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000134683.2
CDS-3UTR TCA 90 bp CCAGGTTCCAGGGTTGGAGGCTACCCTGACTACACACTGAATTCCAGGTCTGCCTCGCCCAGGCATTCTTaGGGAAGGCAGAGATTCTCC +
Preference number: 4 (lower is better)
Translates to: PGSRVGGYPDYTLNSRSASPRHS*GRQRFS
Trigger: GGAGAATCTCTGCCTTCCTCAAGAATGCCTGGGCGA...GGCAGACCTGGAATTCAGTGTGTAGTCAGGGTAGCCTCCAACCCTGGAACCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076657.11
CDS-3UTR CCA 90 bp CTCACCCCAGACTTTCAGAATGAAAATTTAACAGGTCACCTCCATCTCCCGGGCTGTCCCACTGCAAGGTaGGAGGCTTGCGAGGCCCCA +
Preference number: 4 (lower is better)
Translates to: LTPDFQNENLTGHLHLPGCPTAR*EACEAP
Trigger: TGGGGCCTCGCAAGCCTCCCACCTTGCAGTGGGACA...GCCCGGGAGATGGAGGTGACCTGTTAAATTTTCATTCTGAAAGTCTGGGGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000134683.2
CDS-3UTR GCA 90 bp CTCACCCCAGACTTTCAGAATGAAAATTTAACAGGTCACCTCCATCTCCCGGGCGCAAGGTGGGAGGCTTaGGAGGCCCCAGACAGAGAA +
Preference number: 4 (lower is better)
Translates to: LTPDFQNENLTGHLHLPGARWEA*EAPDRE
Trigger: TTCTCTGTCTGGGGCCTCGCAAGCCTCCCACCTTGC...GCCCGGGAGATGGAGGTGACCTGTTAAATTTTCATTCTGAAAGTCTGGGGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000134683.2
CDS-3UTR CCA 90 bp AGGTCTGCCTACACTACATATGAGACTTCCTTGTCTCACAACAACAAAAGAAACCAGCCAGTCCAAGCTTaGACCCAGAGGATCCTGAGG +
Preference number: 4 (lower is better)
Translates to: RSAYTTYETSLSHNNKRNQPVQA*TQRILR
Trigger: CCTCAGGATCCTCTGGGTCCAAGCTTGGACTGGCTG...GTTTCTTTTGTTGTTGTGAGACAAGGAAGTCTCATATGTAGTGTAGGCAGACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076657.11
3UTR CAA 72 bp CATGGGCATAATTATAGATTAGAGCATTCTAGGTCTTaGAAAGTCAGGGTGGTAGATAGCTGGTGGTGGGTT +
Preference number: 4 (lower is better)
Translates to: HGHNYRLEHSRS*KVRVVDSWWWV
Trigger: AACCCACCACCAGCTATCTACCACCCTGACTTTCAAAGACCTAGAATGCTCTAATCTATAATTATGCCCATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134683.2
CDS-3UTR CAA 90 bp GTCAGGGTGGTAGATAGCTGGTGGTGGGTTTTAGAACTTCTCTGTCACACTCCATGCAAGGTGGGAGGCTaGCGAGGCCCCAGACAGAGA +
Preference number: 5 (lower is better)
Translates to: VRVVDSWWWVLELLCHTPCKVGG*RGPRQR
Trigger: TCTCTGTCTGGGGCCTCGCAAGCCTCCCACCTTGCA...TGGAGTGTGACAGAGAAGTTCTAAAACCCACCACCAGCTATCTACCACCCTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000134683.2
CDS-3UTR CAA 90 bp TACACTTGTCTAGGTCACCGTTTATTGCTCCCACCTCTGATCATATCCAGGTTCTTCGCCCAGGCATTCTaGAGGAAGGCAGAGATTCTC +
Preference number: 5 (lower is better)
Translates to: YTCLGHRLLLPPLIISRFFAQAF*RKAEIL
Trigger: GAGAATCTCTGCCTTCCTCAAGAATGCCTGGGCGAA...GAACCTGGATATGATCAGAGGTGGGAGCAATAAACGGTGACCTAGACAAGTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076657.11
CDS TCA 72 bp CTCTCACAGGCACTGCAAAACAGAAGGATGCGCCACTaGGAGCAGCAGCTCTCCAGAGTCCTGGGTAGTTGT +
Preference number: 6 (lower is better)
Translates to: LSQALQNRRMRH*EQQLSRVLGSC
Trigger: ACAACTACCCAGGACTCTGGAGAGCTGCTGCTCTCAGTGGCGCATCCTTCTGTTTTGCAGTGCCTGTGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108644.8