Pregenerated sensors for NDUFA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000014294Ensembl transcript IDs: ENSMUST00000014438.5
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TGTCTTCAGTCCAGCAGGTTCAGCTGCTCTCGCTCACAGTCCTCAGTGGAGACCACGCAACCCCAGCTTTaGGCCGACCGCTCGGCTAGC | + |
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Preference number: 4 (lower is better) Translates to: CLQSSRFSCSRSQSSVETTQPQL*ADRSAS Trigger: GCTAGCCGAGCGGTCGGCGCAAAGCTGGGGTTGCGT...GGTCTCCACTGAGGACTGTGAGCGAGAGCAGCTGAACCTGCTGGACTGAAGACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS-3UTR GCA 90 bp | TGTCTTCAGTCCAGCAGGTTCAGCTGCTCTCGCTCACAGTCCTCAGTGGAGACCGCCCAAAGCTTGGGCTaGACCTCCGAGCATTCGCGG | + |
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Preference number: 4 (lower is better) Translates to: CLQSSRFSCSRSQSSVETAQSLG*TSEHSR Trigger: CCGCGAATGCTCGGAGGTGCAGCCCAAGCTTTGGGC...GGTCTCCACTGAGGACTGTGAGCGAGAGCAGCTGAACCTGCTGGACTGAAGACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS-3UTR CCA 90 bp | TGTCTTCAGTCCAGCAGGTTCAGCTGCTCTCGCTCACAGTCCTCAGTGGAGACCAAATCCCTCACACCCTaGCTGCCTGGGGAACGCTGG | + |
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Preference number: 4 (lower is better) Translates to: CLQSSRFSCSRSQSSVETKSLTP*LPGERW Trigger: CCAGCGTTCCCCAGGCAGCCAGGGTGTGAGGGATTT...GGTCTCCACTGAGGACTGTGAGCGAGAGCAGCTGAACCTGCTGGACTGAAGACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS-3UTR CCA 90 bp | TGTCTTCAGTCCAGCAGGTTCAGCTGCTCTCGCTCACAGTCCTCAGTGGAGACCAGCGGGCCCAAAGCTTaGGCTGCACCTCCGAGCATT | + |
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Preference number: 4 (lower is better) Translates to: CLQSSRFSCSRSQSSVETSGPKA*AAPPSI Trigger: AATGCTCGGAGGTGCAGCCCAAGCTTTGGGCCCGCT...GGTCTCCACTGAGGACTGTGAGCGAGAGCAGCTGAACCTGCTGGACTGAAGACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS-3UTR TCA 90 bp | TGTCTTCAGTCCAGCAGGTTCAGCTGCTCTCGCTCACAGTCCTCAGTGGAGACCCGTACCGTTGCACGATaGAATCCCTCACACCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: CLQSSRFSCSRSQSSVETRTVAR*NPSHPG Trigger: GCCAGGGTGTGAGGGATTTCATCGTGCAACGGTACG...GGTCTCCACTGAGGACTGTGAGCGAGAGCAGCTGAACCTGCTGGACTGAAGACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS-3UTR CCA 90 bp | TGTCTTCAGTCCAGCAGGTTCAGCTGCTCTCGCTCACAGTCCTCAGTGGAGACCATTCGCGGATCAGAATaGGCAGGTTGGGGTGCGCCT | + |
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Preference number: 4 (lower is better) Translates to: CLQSSRFSCSRSQSSVETIRGSE*AGWGAP Trigger: AGGCGCACCCCAACCTGCCCATTCTGATCCGCGAAT...GGTCTCCACTGAGGACTGTGAGCGAGAGCAGCTGAACCTGCTGGACTGAAGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS-3UTR CCA 90 bp | TGTCTTCAGTCCAGCAGGTTCAGCTGCTCTCGCTCACAGTCCTCAGTGGAGACCTCAGAATGGGCAGGTTaGGGTGCGCCTTCTTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: CLQSSRFSCSRSQSSVETSEWAG*GAPSSA Trigger: AGCTGAAGAAGGCGCACCCCAACCTGCCCATTCTGA...GGTCTCCACTGAGGACTGTGAGCGAGAGCAGCTGAACCTGCTGGACTGAAGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS-3UTR GCA 90 bp | TGTCTTCAGTCCAGCAGGTTCAGCTGCTCTCGCTCACAGTCCTCAGTGGAGACCCCGCTTAGCACATTCTaGATGGCTCTGGTTACCTCA | + |
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Preference number: 4 (lower is better) Translates to: CLQSSRFSCSRSQSSVETPLSTF*MALVTS Trigger: TGAGGTAACCAGAGCCATGCAGAATGTGCTAAGCGG...GGTCTCCACTGAGGACTGTGAGCGAGAGCAGCTGAACCTGCTGGACTGAAGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS-3UTR CCA 90 bp | TGTCTTCAGTCCAGCAGGTTCAGCTGCTCTCGCTCACAGTCCTCAGTGGAGACCCATTCTGCATGGCTCTaGTTACCTCATCAGCACTCA | + |
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Preference number: 4 (lower is better) Translates to: CLQSSRFSCSRSQSSVETHSAWL*LPHQHS Trigger: TGAGTGCTGATGAGGTAACCAGAGCCATGCAGAATG...GGTCTCCACTGAGGACTGTGAGCGAGAGCAGCTGAACCTGCTGGACTGAAGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS-3UTR CCA 90 bp | TGTCTTCAGTCCAGCAGGTTCAGCTGCTCTCGCTCACAGTCCTCAGTGGAGACCTTAGCACATTCTGCATaGCTCTGGTTACCTCATCAG | + |
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Preference number: 4 (lower is better) Translates to: CLQSSRFSCSRSQSSVETLAHSA*LWLPHQ Trigger: CTGATGAGGTAACCAGAGCCATGCAGAATGTGCTAA...GGTCTCCACTGAGGACTGTGAGCGAGAGCAGCTGAACCTGCTGGACTGAAGACA 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS CCA 90 bp | GGGCCCAAAGCTTGGGCTGCACCTCCGAGCATTCGCGGATCAGAATaGGCAGGTTGGGGTGCGCCTTCTTCAGCTCCACGTACCGTTGCA | + |
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Preference number: 5 (lower is better) Translates to: GPKAWAAPPSIRGSE*AGWGAPSSAPRTVA Trigger: TGCAACGGTACGTGGAGCTGAAGAAGGCGCACCCCAACCTGCCCATTCTGATCCGCGAATGCTCGGAGGTGCAGCCCAAGCTTTGGGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS GCA 90 bp | AGAATGGGCAGGTTGGGGTGCGCCTTCTTCAGCTCCACGTACCGTTaGACGATGAAATCCCTCACACCCTGGCTGCCTGGGGAACGCTGG | + |
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Preference number: 5 (lower is better) Translates to: RMGRLGCAFFSSTYR*TMKSLTPWLPGERW Trigger: CCAGCGTTCCCCAGGCAGCCAGGGTGTGAGGGATTTCATCGTGCAACGGTACGTGGAGCTGAAGAAGGCGCACCCCAACCTGCCCATTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS CCA 90 bp | GAGACACCGTCTTCTCTTGGCCAAAAGCATAGCGGGCCCAAAGCTTaGGCTGCACCTCCGAGCATTCGCGGATCAGAATGGGCAGGTTGG | + |
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Preference number: 5 (lower is better) Translates to: ETPSSLGQKHSGPKA*AAPPSIRGSEWAGW Trigger: CCAACCTGCCCATTCTGATCCGCGAATGCTCGGAGGTGCAGCCCAAGCTTTGGGCCCGCTATGCTTTTGGCCAAGAGAAGACGGTGTCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS-3UTR CAA 90 bp | TGTCTTCAGTCCAGCAGGTTCAGCTGCTCTCGCTCACAGTCCTCAGTGGAGACCATCAGAATGGGCAGGTaGGGGTGCGCCTTCTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: CLQSSRFSCSRSQSSVETIRMGR*GCAFFS Trigger: GCTGAAGAAGGCGCACCCCAACCTGCCCATTCTGAT...GGTCTCCACTGAGGACTGTGAGCGAGAGCAGCTGAACCTGCTGGACTGAAGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS-3UTR CAA 90 bp | TGTCTTCAGTCCAGCAGGTTCAGCTGCTCTCGCTCACAGTCCTCAGTGGAGACCAGACACCGTCTTCTCTaGGCCAAAAGCATAGCGGGC | + |
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Preference number: 5 (lower is better) Translates to: CLQSSRFSCSRSQSSVETRHRLL*AKSIAG Trigger: GCCCGCTATGCTTTTGGCCAAGAGAAGACGGTGTCT...GGTCTCCACTGAGGACTGTGAGCGAGAGCAGCTGAACCTGCTGGACTGAAGACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS CCA 72 bp | GCTTGGGCTGCACCTCCGAGCATTCGCGGATCAGAATaGGCAGGTTGGGGTGCGCCTTCTTCAGCTCCACGT | + |
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Preference number: 6 (lower is better) Translates to: AWAAPPSIRGSE*AGWGAPSSAPR Trigger: ACGTGGAGCTGAAGAAGGCGCACCCCAACCTGCCCATTCTGATCCGCGAATGCTCGGAGGTGCAGCCCAAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS CAA 90 bp | CAGAATGGGCAGGTTGGGGTGCGCCTTCTTCAGCTCCACGTACCGTaGCACGATGAAATCCCTCACACCCTGGCTGCCTGGGGAACGCTG | + |
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Preference number: 6 (lower is better) Translates to: QNGQVGVRLLQLHVP*HDEIPHTLAAWGTL Trigger: CAGCGTTCCCCAGGCAGCCAGGGTGTGAGGGATTTCATCGTGCAACGGTACGTGGAGCTGAAGAAGGCGCACCCCAACCTGCCCATTCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS GCA 72 bp | AGGTTGGGGTGCGCCTTCTTCAGCTCCACGTACCGTTaGACGATGAAATCCCTCACACCCTGGCTGCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: RLGCAFFSSTYR*TMKSLTPWLPG Trigger: CCCAGGCAGCCAGGGTGTGAGGGATTTCATCGTGCAACGGTACGTGGAGCTGAAGAAGGCGCACCCCAACCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS CCA 72 bp | GCACCTCCGAGCATTCGCGGATCAGAATGGGCAGGTTaGGGTGCGCCTTCTTCAGCTCCACGTACCGTTGCA | + |
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Preference number: 6 (lower is better) Translates to: APPSIRGSEWAG*GAPSSAPRTVA Trigger: TGCAACGGTACGTGGAGCTGAAGAAGGCGCACCCCAACCTGCCCATTCTGATCCGCGAATGCTCGGAGGTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS CAA 72 bp | CAGGTTGGGGTGCGCCTTCTTCAGCTCCACGTACCGTaGCACGATGAAATCCCTCACACCCTGGCTGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: QVGVRLLQLHVP*HDEIPHTLAAW Trigger: CCAGGCAGCCAGGGTGTGAGGGATTTCATCGTGCAACGGTACGTGGAGCTGAAGAAGGCGCACCCCAACCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS CAA 72 bp | TGCACCTCCGAGCATTCGCGGATCAGAATGGGCAGGTaGGGGTGCGCCTTCTTCAGCTCCACGTACCGTTGC | + |
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Preference number: 6 (lower is better) Translates to: CTSEHSRIRMGR*GCAFFSSTYRC Trigger: GCAACGGTACGTGGAGCTGAAGAAGGCGCACCCCAACCTGCCCATTCTGATCCGCGAATGCTCGGAGGTGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS CAA 90 bp | AGCTTGGGCTGCACCTCCGAGCATTCGCGGATCAGAATGGGCAGGTaGGGGTGCGCCTTCTTCAGCTCCACGTACCGTTGCACGATGAAA | + |
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Preference number: 6 (lower is better) Translates to: SLGCTSEHSRIRMGR*GCAFFSSTYRCTMK Trigger: TTTCATCGTGCAACGGTACGTGGAGCTGAAGAAGGCGCACCCCAACCTGCCCATTCTGATCCGCGAATGCTCGGAGGTGCAGCCCAAGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS CCA 72 bp | TCTTCTCTTGGCCAAAAGCATAGCGGGCCCAAAGCTTaGGCTGCACCTCCGAGCATTCGCGGATCAGAATGG | + |
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Preference number: 6 (lower is better) Translates to: SSLGQKHSGPKA*AAPPSIRGSEW Trigger: CCATTCTGATCCGCGAATGCTCGGAGGTGCAGCCCAAGCTTTGGGCCCGCTATGCTTTTGGCCAAGAGAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS CAA 90 bp | GGTTACCTCATCAGCACTCAGATTGTTCAGAGACACCGTCTTCTCTaGGCCAAAAGCATAGCGGGCCCAAAGCTTGGGCTGCACCTCCGA | + |
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Preference number: 6 (lower is better) Translates to: GYLISTQIVQRHRLL*AKSIAGPKLGLHLR Trigger: TCGGAGGTGCAGCCCAAGCTTTGGGCCCGCTATGCTTTTGGCCAAGAGAAGACGGTGTCTCTGAACAATCTGAGTGCTGATGAGGTAACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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| CDS CAA 72 bp | ATCAGCACTCAGATTGTTCAGAGACACCGTCTTCTCTaGGCCAAAAGCATAGCGGGCCCAAAGCTTGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: ISTQIVQRHRLL*AKSIAGPKLGL Trigger: CAGCCCAAGCTTTGGGCCCGCTATGCTTTTGGCCAAGAGAAGACGGTGTCTCTGAACAATCTGAGTGCTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000014438.5 |
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