Pregenerated sensors for NDUFA13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036199Ensembl transcript IDs: ENSMUST00000110167.5
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGGTTTTCCCGGAGAATCTGCAGGGTCCTCCGGTCCTTCTCTGCCTaGAAGAGCGGCATGAGGGCGATCCTGGCCTCCAAGTCCTCAATC | + |
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Preference number: 5 (lower is better) Translates to: RFSRRICRVLRSFSA*KSGMRAILASKSSI Trigger: GATTGAGGACTTGGAGGCCAGGATCGCCCTCATGCCGCTCTTCCAGGCAGAGAAGGACCGGAGGACCCTGCAGATTCTCCGGGAAAACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110167.5 |
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| CDS GCA 90 bp | TCCTTCATGATGATGGCTTCCTCCTCCAGGTTTTCCCGGAGAATCTaGAGGGTCCTCCGGTCCTTCTCTGCCTGGAAGAGCGGCATGAGG | + |
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Preference number: 5 (lower is better) Translates to: SFMMMASSSRFSRRI*RVLRSFSAWKSGMR Trigger: CCTCATGCCGCTCTTCCAGGCAGAGAAGGACCGGAGGACCCTGCAGATTCTCCGGGAAAACCTGGAGGAGGAAGCCATCATCATGAAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110167.5 |
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| CDS CCA 90 bp | CATCTCCTCCTTGGTGCGCAACCCATACATCTCGCCAATGAGGGGTaGCACCCATCGTGTGGTATGGAACACAGACTCGCCCACCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: HLLLGAQPIHLANEG*HPSCGMEHRLAHLP Trigger: TGGAAGGTGGGCGAGTCTGTGTTCCATACCACACGATGGGTGCCACCCCTCATTGGCGAGATGTATGGGTTGCGCACCAAGGAGGAGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110167.5 |
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| CDS TCA 90 bp | CATTGCTCATCTCCTCCTTGGTGCGCAACCCATACATCTCGCCAATaGGGGGTGGCACCCATCGTGTGGTATGGAACACAGACTCGCCCA | + |
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Preference number: 5 (lower is better) Translates to: HCSSPPWCATHTSRQ*GVAPIVWYGTQTRP Trigger: TGGGCGAGTCTGTGTTCCATACCACACGATGGGTGCCACCCCTCATTGGCGAGATGTATGGGTTGCGCACCAAGGAGGAGATGAGCAATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110167.5 |
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| CDS GCA 72 bp | TTCCCGGAGAATCTGCAGGGTCCTCCGGTCCTTCTCTaGCTGGAAGAGCGGCATGAGGGCGATCCTGGCCTC | + |
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Preference number: 6 (lower is better) Translates to: FPENLQGPPVLL*LEERHEGDPGL Trigger: GAGGCCAGGATCGCCCTCATGCCGCTCTTCCAGGCAGAGAAGGACCGGAGGACCCTGCAGATTCTCCGGGAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110167.5 |
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| CDS CCA 72 bp | CGGAGAATCTGCAGGGTCCTCCGGTCCTTCTCTGCCTaGAAGAGCGGCATGAGGGCGATCCTGGCCTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: RRICRVLRSFSA*KSGMRAILASK Trigger: CTTGGAGGCCAGGATCGCCCTCATGCCGCTCTTCCAGGCAGAGAAGGACCGGAGGACCCTGCAGATTCTCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110167.5 |
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| CDS GCA 72 bp | CGATCCTGGCCTCCAAGTCCTCAATCAGCAGGCGCCTaGGCTCCTGGTTCCACCTCATCATTCTCCAGTAGC | + |
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Preference number: 6 (lower is better) Translates to: RSWPPSPQSAGA*APGSTSSFSSS Trigger: GCTACTGGAGAATGATGAGGTGGAACCAGGAGCGCAGGCGCCTGCTGATTGAGGACTTGGAGGCCAGGATCG 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110167.5 |
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| CDS GCA 72 bp | ATGATGGCTTCCTCCTCCAGGTTTTCCCGGAGAATCTaGAGGGTCCTCCGGTCCTTCTCTGCCTGGAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: MMASSSRFSRRI*RVLRSFSAWKS Trigger: GCTCTTCCAGGCAGAGAAGGACCGGAGGACCCTGCAGATTCTCCGGGAAAACCTGGAGGAGGAAGCCATCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110167.5 |
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| CDS CCA 72 bp | ATCTCGCCAATGAGGGGTGGCACCCATCGTGTGGTATaGAACACAGACTCGCCCACCTTCCAGTTGGGCACA | + |
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Preference number: 6 (lower is better) Translates to: ISPMRGGTHRVV*NTDSPTFQLGT Trigger: TGTGCCCAACTGGAAGGTGGGCGAGTCTGTGTTCCATACCACACGATGGGTGCCACCCCTCATTGGCGAGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110167.5 |
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| CDS CCA 72 bp | CTTGGTGCGCAACCCATACATCTCGCCAATGAGGGGTaGCACCCATCGTGTGGTATGGAACACAGACTCGCC | + |
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Preference number: 6 (lower is better) Translates to: LGAQPIHLANEG*HPSCGMEHRLA Trigger: GGCGAGTCTGTGTTCCATACCACACGATGGGTGCCACCCCTCATTGGCGAGATGTATGGGTTGCGCACCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110167.5 |
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| CDS GCA 72 bp | TCATCATTCTCCAGTAGCCAAAGATCAAGGCCCCGATaGCCACAGCAAACATGCTGTACCCCGACAGTCCCC | + |
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Preference number: 6 (lower is better) Translates to: SSFSSSQRSRPR*PQQTCCTPTVP Trigger: GGGGACTGTCGGGGTACAGCATGTTTGCTGTGGGCATCGGGGCCTTGATCTTTGGCTACTGGAGAATGATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110167.5 |
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| CDS CAA 72 bp | CAGGTGAAGCCGAAGTTGGCATTGCTCATCTCCTCCTaGGTGCGCAACCCATACATCTCGCCAATGAGGGGT | + |
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Preference number: 6 (lower is better) Translates to: QVKPKLALLISS*VRNPYISPMRG Trigger: ACCCCTCATTGGCGAGATGTATGGGTTGCGCACCAAGGAGGAGATGAGCAATGCCAACTTCGGCTTCACCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110167.5 |
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