Pregenerated sensors for NDUFA12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020022Ensembl transcript IDs: ENSMUST00000020209.16, ENSMUST00000135292.3, ENSMUST00000179990.8
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGACATCTCCAATAACCTCCTCCATACAGAGCCACACCAGAGTCTaGGCCAGGCTGCCACTCGGTGTTTGTGTCTCTCCACGAAGCTTA | + |
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Preference number: 1 (lower is better) Translates to: RTSPITSSIQSHTRV*ARLPLGVCVSPRSL Trigger: TAAGCTTCGTGGAGAGACACAAACACCGAGTGGCAGCCTGGCTCAGACTCTGGTGTGGCTCTGTATGGAGGAGGTTATTGGAGATGTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 |
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| 3UTR CCA 90 bp | GCTAGGTCAAACAATTTTAATCAAGTTCATGGTCAGCTGCTAGGATaGTCCTGCACTAGCCTGGAAGTGCAGGAACAGTCTTCACTGCGG | + |
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Preference number: 1 (lower is better) Translates to: ARSNNFNQVHGQLLG*SCTSLEVQEQSSLR Trigger: CCGCAGTGAAGACTGTTCCTGCACTTCCAGGCTAGTGCAGGACCATCCTAGCAGCTGACCATGAACTTGATTAAAATTGTTTGACCTAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 |
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| 3UTR GCA 90 bp | TCAAACAATTTTAATCAAGTTCATGGTCAGCTGCTAGGATGGTCCTaGACTAGCCTGGAAGTGCAGGAACAGTCTTCACTGCGGTCACTT | + |
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Preference number: 1 (lower is better) Translates to: SNNFNQVHGQLLGWS*TSLEVQEQSSLRSL Trigger: AAGTGACCGCAGTGAAGACTGTTCCTGCACTTCCAGGCTAGTGCAGGACCATCCTAGCAGCTGACCATGAACTTGATTAAAATTGTTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135292.3 |
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| 3UTR-3UTR GCA 90 bp | GCCACACCAGAGTCTGAGCCAGGCTGCCACTCGGTGTTTGTGTCTCTCCACGAAGCACTAGCCTGGAAGTaGAGGAACAGTCTTCACTGC | + |
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Preference number: 2 (lower is better) Translates to: ATPESEPGCHSVFVSLHEALAWK*RNSLHC Trigger: GCAGTGAAGACTGTTCCTGCACTTCCAGGCTAGTGC...TTCGTGGAGAGACACAAACACCGAGTGGCAGCCTGGCTCAGACTCTGGTGTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 |
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| 3UTR-3UTR TCA 90 bp | ACTTGGGAGGCACAGGCAGGTAGATCTTTTGAGTTCAAGGCTAGCCTAGTCTACAGCCACACCAGAGTCTaGGCCAGGCTGCCACTCGGT | + |
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Preference number: 2 (lower is better) Translates to: TWEAQAGRSFEFKASLVYSHTRV*ARLPLG Trigger: ACCGAGTGGCAGCCTGGCTCAGACTCTGGTGTGGCT...GTAGACTAGGCTAGCCTTGAACTCAAAAGATCTACCTGCCTGTGCCTCCCAAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 |
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| 3UTR CAA 90 bp | CATACAGAGCCACACCAGAGTCTGAGCCAGGCTGCCACTCGGTGTTaGTGTCTCTCCACGAAGCTTACCAATGTCTGGCTCAGGTTGGAA | + |
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Preference number: 2 (lower is better) Translates to: HTEPHQSLSQAATRC*CLSTKLTNVWLRLE Trigger: TTCCAACCTGAGCCAGACATTGGTAAGCTTCGTGGAGAGACACAAACACCGAGTGGCAGCCTGGCTCAGACTCTGGTGTGGCTCTGTATG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 |
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| 3UTR-3UTR GCA 90 bp | TGGGGTGGGGAAGGAAATAGGACATCTCCAATAACCTCCTCCATACAGAGCCACGAGTCTGAGCCAGGCTaGCACTCGGTGTTTGTGTCT | + |
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Preference number: 2 (lower is better) Translates to: WGGEGNRTSPITSSIQSHESEPG*HSVFVS Trigger: AGACACAAACACCGAGTGGCAGCCTGGCTCAGACTC...GTGGCTCTGTATGGAGGAGGTTATTGGAGATGTCCTATTTCCTTCCCCACCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 |
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| 3UTR-3UTR CCA 90 bp | CCAGAGTCTGAGCCAGGCTGCCACTCGGTGTTTGTGTCTCTCCACGAAGCTTACAAGCTTACCAATGTCTaGCTCAGGTTGGAATGCAGC | + |
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Preference number: 2 (lower is better) Translates to: PESEPGCHSVFVSLHEAYKLTNV*LRLECS Trigger: GCTGCATTCCAACCTGAGCCAGACATTGGTAAGCTT...GTAAGCTTCGTGGAGAGACACAAACACCGAGTGGCAGCCTGGCTCAGACTCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 |
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| 3UTR-3UTR GCA 90 bp | GGGGAAGGAAATAGGACATCTCCAATAACCTCCTCCATACAGAGCCACACCAGAGAGTCTGAGCCAGGCTaGCACTCGGTGTTTGTGTCT | + |
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Preference number: 2 (lower is better) Translates to: GEGNRTSPITSSIQSHTRESEPG*HSVFVS Trigger: AGACACAAACACCGAGTGGCAGCCTGGCTCAGACTC...TCTGGTGTGGCTCTGTATGGAGGAGGTTATTGGAGATGTCCTATTTCCTTCCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 |
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| 3UTR-3UTR CCA 90 bp | GACATCTCCAATAACCTCCTCCATACAGAGCCACACCAGAGTCTGAGCCAGGCTCACAAACAGGTCCCCTaGGGCTATTTCCTAGAACTG | + |
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Preference number: 2 (lower is better) Translates to: DISNNLLHTEPHQSLSQAHKQVP*GYFLEL Trigger: CAGTTCTAGGAAATAGCCCCAGGGGACCTGTTTGTG...AGCCTGGCTCAGACTCTGGTGTGGCTCTGTATGGAGGAGGTTATTGGAGATGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 |
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| 3UTR-3UTR GCA 90 bp | GAACAGTCTTCACTGCGGTCACTTGTAAGGTGTCGAAGGTGGAACCCATTCATGGCACTAGCCTGGAAGTaGAGGAACAGTCTTCACTGC | + |
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Preference number: 2 (lower is better) Translates to: EQSSLRSLVRCRRWNPFMALAWK*RNSLHC Trigger: GCAGTGAAGACTGTTCCTGCACTTCCAGGCTAGTGC...CATGAATGGGTTCCACCTTCGACACCTTACAAGTGACCGCAGTGAAGACTGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135292.3 |
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| 3UTR-3UTR TCA 90 bp | ACTTGGGAGGCACAGGCAGGTAGATCTTTTGAGTTCAAGGCTAGCCTAGTCTACTTTGCAGGGGATGAATaGCGGTGTGAACGCACAAGA | + |
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Preference number: 2 (lower is better) Translates to: TWEAQAGRSFEFKASLVYFAGDE*RCERTR Trigger: TCTTGTGCGTTCACACCGTCATTCATCCCCTGCAAA...GTAGACTAGGCTAGCCTTGAACTCAAAAGATCTACCTGCCTGTGCCTCCCAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 |
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| 3UTR-3UTR TCA 90 bp | GCACAGGCAGGTAGATCTTTTGAGTTCAAGGCTAGCCTAGTCTACAAAGTGAGTTCGTCAGTCATGCAGTaGAGCCAGCGGTGCCGTTTA | + |
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Preference number: 2 (lower is better) Translates to: AQAGRSFEFKASLVYKVSSSVMQ*SQRCRL Trigger: TAAACGGCACCGCTGGCTTCACTGCATGACTGACGA...ACTCACTTTGTAGACTAGGCTAGCCTTGAACTCAAAAGATCTACCTGCCTGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135292.3 |
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| 3UTR-3UTR TCA 90 bp | GAAGTGCAGGAACAGTCTTCACTGCGGTCACTTGTAAGGTGTCGAAGGTGGAACTATGGTTTGTCCAGATaGATTTACGAGCAGTCGGTG | + |
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Preference number: 2 (lower is better) Translates to: EVQEQSSLRSLVRCRRWNYGLSR*IYEQSV Trigger: CACCGACTGCTCGTAAATTCATCTGGACAAACCATA...GTTCCACCTTCGACACCTTACAAGTGACCGCAGTGAAGACTGTTCCTGCACTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135292.3 |
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| 3UTR-3UTR CCA 90 bp | AATACCAGCACTTGGGAGGCACAGGCAGGTAGATCTTTTGAGTTCAAGGCTAGCGTAAGGTGTCGAAGGTaGAACCCATTCATGAATCTT | + |
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Preference number: 2 (lower is better) Translates to: NTSTWEAQAGRSFEFKASVRCRR*NPFMNL Trigger: AAGATTCATGAATGGGTTCCACCTTCGACACCTTAC...GCTAGCCTTGAACTCAAAAGATCTACCTGCCTGTGCCTCCCAAGTGCTGGTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135292.3 |
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| 3UTR-3UTR TCA 90 bp | AAACACAAACAGGTCCCCTGGGGCTATTTCCTAGAACTGGGAACTTTACTTCAGGAGTGGCAGACACATTaGATTTATGGTTTGTCCAGA | + |
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Preference number: 2 (lower is better) Translates to: KHKQVPWGYFLELGTLLQEWQTH*IYGLSR Trigger: TCTGGACAAACCATAAATTCAATGTGTCTGCCACTC...CTGAAGTAAAGTTCCCAGTTCTAGGAAATAGCCCCAGGGGACCTGTTTGTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135292.3 |
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| 3UTR TCA 72 bp | CCAATAACCTCCTCCATACAGAGCCACACCAGAGTCTaGGCCAGGCTGCCACTCGGTGTTTGTGTCTCTCCA | + |
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Preference number: 3 (lower is better) Translates to: PITSSIQSHTRV*ARLPLGVCVSP Trigger: TGGAGAGACACAAACACCGAGTGGCAGCCTGGCTCAGACTCTGGTGTGGCTCTGTATGGAGGAGGTTATTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 |
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| 3UTR-3UTR CAA 90 bp | ATACCAGCACTTGGGAGGCACAGGCAGGTAGATCTTTTGAGTTCAAGGCTAGCCAATGTCTGGCTCAGGTaGGAATGCAGCCTGCCCTTA | + |
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Preference number: 3 (lower is better) Translates to: IPALGRHRQVDLLSSRLANVWLR*ECSLPL Trigger: TAAGGGCAGGCTGCATTCCAACCTGAGCCAGACATT...GGCTAGCCTTGAACTCAAAAGATCTACCTGCCTGTGCCTCCCAAGTGCTGGTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 |
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| 3UTR-3UTR CAA 90 bp | GGGAAGATCATGAAACACAAACAGGTCCCCTGGGGCTATTTCCTAGAACTGGGAGGAATAAGGAACGTATaGCTCTGGAGTGGCAGACAC | + |
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Preference number: 3 (lower is better) Translates to: GKIMKHKQVPWGYFLELGGIRNV*LWSGRH Trigger: GTGTCTGCCACTCCAGAGCAATACGTTCCTTATTCC...TCCCAGTTCTAGGAAATAGCCCCAGGGGACCTGTTTGTGTTTCATGATCTTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135292.3 |
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| 3UTR-3UTR CAA 90 bp | TGGGGTGGGGAAGGAAATAGGACATCTCCAATAACCTCCTCCATACAGAGCCACGGAGTGGCAGACACATaGAATTTATGGTTTGTCCAG | + |
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Preference number: 3 (lower is better) Translates to: WGGEGNRTSPITSSIQSHGVADT*NLWFVQ Trigger: CTGGACAAACCATAAATTCAATGTGTCTGCCACTCC...GTGGCTCTGTATGGAGGAGGTTATTGGAGATGTCCTATTTCCTTCCCCACCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135292.3 |
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| 3UTR CCA 72 bp | AACAATTTTAATCAAGTTCATGGTCAGCTGCTAGGATaGTCCTGCACTAGCCTGGAAGTGCAGGAACAGTCT | + |
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Preference number: 3 (lower is better) Translates to: NNFNQVHGQLLG*SCTSLEVQEQS Trigger: AGACTGTTCCTGCACTTCCAGGCTAGTGCAGGACCATCCTAGCAGCTGACCATGAACTTGATTAAAATTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 ENSMUST00000179990.8 |
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| CDS-3UTR GCA 90 bp | GGGAAGATCATGAAACACAAACAGGTCCCCTGGGGCTATTTCCTAGAACTGGGACCGTGGCCGGTGACCTaGTGCACGCCGCGCTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: GKIMKHKQVPWGYFLELGPWPVT*CTPRFR Trigger: CCTGAAGCGCGGCGTGCAGCAGGTCACCGGCCACGG...TCCCAGTTCTAGGAAATAGCCCCAGGGGACCTGTTTGTGTTTCATGATCTTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 |
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| 3UTR CAA 72 bp | CCACACCAGAGTCTGAGCCAGGCTGCCACTCGGTGTTaGTGTCTCTCCACGAAGCTTACCAATGTCTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: PHQSLSQAATRC*CLSTKLTNVWL Trigger: GAGCCAGACATTGGTAAGCTTCGTGGAGAGACACAAACACCGAGTGGCAGCCTGGCTCAGACTCTGGTGTGG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 |
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| CDS-3UTR GCA 90 bp | TCAAACAATTTTAATCAAGTTCATGGTCAGCTGCTAGGATGGTCCTGCACTAGCCCGTGGCCGGTGACCTaGTGCACGCCGCGCTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: SNNFNQVHGQLLGWSCTSPWPVT*CTPRFR Trigger: CCTGAAGCGCGGCGTGCAGCAGGTCACCGGCCACGG...GCTAGTGCAGGACCATCCTAGCAGCTGACCATGAACTTGATTAAAATTGTTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020209.16 ENSMUST00000135292.3 ENSMUST00000179990.8 |
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| CDS-3UTR TCA 90 bp | TCAAACAATTTTAATCAAGTTCATGGTCAGCTGCTAGGATGGTCCTGCACTAGCTCGTCAGTCATGCAGTaGAGCCAGCGGTGCCACTCA | + |
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Preference number: 4 (lower is better) Translates to: SNNFNQVHGQLLGWSCTSSSVMQ*SQRCHS Trigger: TGAGTGGCACCGCTGGCTTCACTGCATGACTGACGA...GCTAGTGCAGGACCATCCTAGCAGCTGACCATGAACTTGATTAAAATTGTTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000179990.8 |
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| CDS-3UTR CCA 90 bp | GACATCTCCAATAACCTCCTCCATACAGAGCCACACCAGAGTCTGAGCCAGGCTGTAAGGTGTCGAAGGTaGAACCCATTCATGAATCTT | + |
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Preference number: 4 (lower is better) Translates to: DISNNLLHTEPHQSLSQAVRCRR*NPFMNL Trigger: AAGATTCATGAATGGGTTCCACCTTCGACACCTTAC...AGCCTGGCTCAGACTCTGGTGTGGCTCTGTATGGAGGAGGTTATTGGAGATGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020209.16 |
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| CDS-3UTR TCA 90 bp | GTGAACGCACAAGACACTGCTAGGTCAAACAATTTTAATCAAGTTCATGGTCAGTCGTCAGTCATGCAGTaGAGCCAGCGGTGCCACTCA | + |
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Preference number: 4 (lower is better) Translates to: VNAQDTARSNNFNQVHGQSSVMQ*SQRCHS Trigger: TGAGTGGCACCGCTGGCTTCACTGCATGACTGACGA...CTGACCATGAACTTGATTAAAATTGTTTGACCTAGCAGTGTCTTGTGCGTTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020209.16 |
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| CDS-3UTR CCA 90 bp | AATACCAGCACTTGGGAGGCACAGGCAGGTAGATCTTTTGAGTTCAAGGCTAGCAGGAACGTATTGCTCTaGAGTGGCAGACACATTGAA | + |
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Preference number: 4 (lower is better) Translates to: NTSTWEAQAGRSFEFKASRNVLL*SGRHIE Trigger: TTCAATGTGTCTGCCACTCCAGAGCAATACGTTCCT...GCTAGCCTTGAACTCAAAAGATCTACCTGCCTGTGCCTCCCAAGTGCTGGTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020209.16 |
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| CDS-3UTR TCA 90 bp | GCACAGGCAGGTAGATCTTTTGAGTTCAAGGCTAGCCTAGTCTACAAAGTGAGTGGTGGAACCCATTCATaGATCTTCTTTCTAGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: AQAGRSFEFKASLVYKVSGGTHS*IFFLVV Trigger: CACCACTAGAAAGAAGATTCATGAATGGGTTCCACC...ACTCACTTTGTAGACTAGGCTAGCCTTGAACTCAAAAGATCTACCTGCCTGTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020209.16 |
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| CDS-3UTR TCA 90 bp | TCAAACAATTTTAATCAAGTTCATGGTCAGCTGCTAGGATGGTCCTGCACTAGCTATGGTTTGTCCAGATaGATTTACGAGCAGTCGGTG | + |
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Preference number: 4 (lower is better) Translates to: SNNFNQVHGQLLGWSCTSYGLSR*IYEQSV Trigger: CACCGACTGCTCGTAAATTCATCTGGACAAACCATA...GCTAGTGCAGGACCATCCTAGCAGCTGACCATGAACTTGATTAAAATTGTTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000179990.8 |
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| CDS-3UTR TCA 90 bp | AACAATTTTAATCAAGTTCATGGTCAGCTGCTAGGATGGTCCTGCACTAGCCTGGAGTGGCAGACACATTaGATTTATGGTTTGTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: NNFNQVHGQLLGWSCTSLEWQTH*IYGLSR Trigger: TCTGGACAAACCATAAATTCAATGTGTCTGCCACTC...CAGGCTAGTGCAGGACCATCCTAGCAGCTGACCATGAACTTGATTAAAATTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000179990.8 |
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| CDS-3UTR TCA 90 bp | AGGTCAAACAATTTTAATCAAGTTCATGGTCAGCTGCTAGGATGGTCCTGCACTGGTGGAACCCATTCATaGATCTTCTTTCTAGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: RSNNFNQVHGQLLGWSCTGGTHS*IFFLVV Trigger: CACCACTAGAAAGAAGATTCATGAATGGGTTCCACC...AGTGCAGGACCATCCTAGCAGCTGACCATGAACTTGATTAAAATTGTTTGACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000179990.8 |
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| CDS-3UTR CCA 90 bp | AGGTCAAACAATTTTAATCAAGTTCATGGTCAGCTGCTAGGATGGTCCTGCACTAGGAACGTATTGCTCTaGAGTGGCAGACACATTGAA | + |
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Preference number: 4 (lower is better) Translates to: RSNNFNQVHGQLLGWSCTRNVLL*SGRHIE Trigger: TTCAATGTGTCTGCCACTCCAGAGCAATACGTTCCT...AGTGCAGGACCATCCTAGCAGCTGACCATGAACTTGATTAAAATTGTTTGACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000179990.8 |
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| CDS-3UTR TCA 90 bp | GTGAACGCACAAGACACTGCTAGGTCAAACAATTTTAATCAAGTTCATGGTCAGTATGGTTTGTCCAGATaGATTTACGAGCAGTCGGTG | + |
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Preference number: 4 (lower is better) Translates to: VNAQDTARSNNFNQVHGQYGLSR*IYEQSV Trigger: CACCGACTGCTCGTAAATTCATCTGGACAAACCATA...CTGACCATGAACTTGATTAAAATTGTTTGACCTAGCAGTGTCTTGTGCGTTCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020209.16 |
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| CDS-3UTR CCA 90 bp | AGGTCAAACAATTTTAATCAAGTTCATGGTCAGCTGCTAGGATGGTCCTGCACTGTAAGGTGTCGAAGGTaGAACCCATTCATGAATCTT | + |
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Preference number: 4 (lower is better) Translates to: RSNNFNQVHGQLLGWSCTVRCRR*NPFMNL Trigger: AAGATTCATGAATGGGTTCCACCTTCGACACCTTAC...AGTGCAGGACCATCCTAGCAGCTGACCATGAACTTGATTAAAATTGTTTGACCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000179990.8 |
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| CDS-3UTR CAA 90 bp | AACAATTTTAATCAAGTTCATGGTCAGCTGCTAGGATGGTCCTGCACTAGCCTGGGAATAAGGAACGTATaGCTCTGGAGTGGCAGACAC | + |
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Preference number: 5 (lower is better) Translates to: NNFNQVHGQLLGWSCTSLGIRNV*LWSGRH Trigger: GTGTCTGCCACTCCAGAGCAATACGTTCCTTATTCC...CAGGCTAGTGCAGGACCATCCTAGCAGCTGACCATGAACTTGATTAAAATTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000179990.8 |
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| CDS-3UTR CAA 90 bp | TCAAACAATTTTAATCAAGTTCATGGTCAGCTGCTAGGATGGTCCTGCACTAGCGGAATAAGGAACGTATaGCTCTGGAGTGGCAGACAC | + |
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Preference number: 5 (lower is better) Translates to: SNNFNQVHGQLLGWSCTSGIRNV*LWSGRH Trigger: GTGTCTGCCACTCCAGAGCAATACGTTCCTTATTCC...GCTAGTGCAGGACCATCCTAGCAGCTGACCATGAACTTGATTAAAATTGTTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000179990.8 |
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| CDS-3UTR CAA 90 bp | TCAAACAATTTTAATCAAGTTCATGGTCAGCTGCTAGGATGGTCCTGCACTAGCGGAGTGGCAGACACATaGAATTTATGGTTTGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: SNNFNQVHGQLLGWSCTSGVADT*NLWFVQ Trigger: CTGGACAAACCATAAATTCAATGTGTCTGCCACTCC...GCTAGTGCAGGACCATCCTAGCAGCTGACCATGAACTTGATTAAAATTGTTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020209.16 ENSMUST00000179990.8 |
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| CDS-3UTR CAA 90 bp | CCTAGTCTACAAAGTGAGTTCCAAAACATCCAGAGCCACATAAAGAAATCCTATGGAGTGGCAGACACATaGAATTTATGGTTTGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: PSLQSEFQNIQSHIKKSYGVADT*NLWFVQ Trigger: CTGGACAAACCATAAATTCAATGTGTCTGCCACTCC...ATAGGATTTCTTTATGTGGCTCTGGATGTTTTGGAACTCACTTTGTAGACTAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020209.16 |
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