Pregenerated sensors for NDUFA11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002379Ensembl transcript IDs: ENSMUST00000002452.8, ENSMUST00000233233.2, ENSMUST00000233832.2
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTGAACAGGGCGGCCGCAGTGCCCATGTAGACACAGCCCATGGCTaGTGTCCCATAGCTGTGAGTGCGAGCTCCCAATGTCAGGCCTCC | + |
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Preference number: 1 (lower is better) Translates to: LEQGGRSAHVDTAHG*CPIAVSASSQCQAS Trigger: GGAGGCCTGACATTGGGAGCTCGCACTCACAGCTATGGGACAGCAGCCATGGGCTGTGTCTACATGGGCACTGCGGCCGCCCTGTTCAAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233832.2 |
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| 3UTR TCA 90 bp | GGCCTCTCTAATAGCCCAGCAACAGAGTTAAGGGGATGGAGAAACTaGGGCCAAAGGCTGCCCTGCATCAATCCCTTTAACTCAAGAGAC | + |
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Preference number: 1 (lower is better) Translates to: GLSNSPATELRGWRN*GQRLPCINPFNSRD Trigger: GTCTCTTGAGTTAAAGGGATTGATGCAGGGCAGCCTTTGGCCTCAGTTTCTCCATCCCCTTAACTCTGTTGCTGGGCTATTAGAGAGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| 3UTR-3UTR GCA 90 bp | CACAGGGGTTTGGCTCACACCTTGGGGGTAGGGAACAACTCCCAGCCTTCCAGCACAGGGCGGCCGCAGTaGCCATGTAGACACAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: HRGLAHTLGVGNNSQPSSTGRPQ*PCRHSP Trigger: TGGGCTGTGTCTACATGGGCACTGCGGCCGCCCTGT...GCTGGAAGGCTGGGAGTTGTTCCCTACCCCCAAGGTGTGAGCCAAACCCCTGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233832.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGGAAGATGGGGTCTGATAGAGCGAGGCTTCCTCAGGGGCCTCTCTAATAGCGAACTGTGGCTGGCATaGCTTTCCTGTCCCCAGACC | + |
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Preference number: 2 (lower is better) Translates to: PGRWGLIERGFLRGLSNSELWLA*LSCPQT Trigger: GGTCTGGGGACAGGAAAGCCATGCCAGCCACAGTTC...GCTATTAGAGAGGCCCCTGAGGAAGCCTCGCTCTATCAGACCCCATCTTCCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| 3UTR-3UTR CCA 90 bp | GGTCTGATAGAGCGAGGCTTCCTCAGGGGCCTCTCTAATAGCCCAGCAACAGAGCAGCTGAACTGTGGCTaGCATGGCTTTCCTGTCCCC | + |
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Preference number: 2 (lower is better) Translates to: GLIERGFLRGLSNSPATEQLNCG*HGFPVP Trigger: GGGGACAGGAAAGCCATGCCAGCCACAGTTCAGCTG...CTCTGTTGCTGGGCTATTAGAGAGGCCCCTGAGGAAGCCTCGCTCTATCAGACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| 3UTR-3UTR GCA 90 bp | GGTCTGATAGAGCGAGGCTTCCTCAGGGGCCTCTCTAATAGCCCAGCAACAGAGACTGAGGCCAAAGGCTaGCCTGCATCAATCCCTTTA | + |
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Preference number: 2 (lower is better) Translates to: GLIERGFLRGLSNSPATETEAKG*PASIPL Trigger: TAAAGGGATTGATGCAGGGCAGCCTTTGGCCTCAGT...CTCTGTTGCTGGGCTATTAGAGAGGCCCCTGAGGAAGCCTCGCTCTATCAGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| 3UTR CAA 90 bp | CAGGAACATACAGCGTTTATTTGTCACAGGGGTTTGGCTCACACCTaGGGGGTAGGGAACAACTCCCAGCCTTCCAGCTTGCCGATCTTG | + |
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Preference number: 2 (lower is better) Translates to: QEHTAFICHRGLAHT*GVGNNSQPSSLPIL Trigger: CAAGATCGGCAAGCTGGAAGGCTGGGAGTTGTTCCCTACCCCCAAGGTGTGAGCCAAACCCCTGTGACAAATAAACGCTGTATGTTCCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233832.2 |
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| 3UTR TCA 72 bp | GGGCACAGTCTCCCCTATCACGGAGCTGCCTGCTGTTaGGAAGGCAGCGACTGCCGTAGGCAGGGGACAGAG | + |
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Preference number: 3 (lower is better) Translates to: GHSLPYHGAACC*EGSDCRRQGTE Trigger: CTCTGTCCCCTGCCTACGGCAGTCGCTGCCTTCTCAACAGCAGGCAGCTCCGTGATAGGGGAGACTGTGCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| 3UTR CCA 72 bp | ACAGGGCGGCCGCAGTGCCCATGTAGACACAGCCCATaGCTGCTGTCCCATAGCTGTGAGTGCGAGCTCCCA | + |
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Preference number: 3 (lower is better) Translates to: TGRPQCPCRHSP*LLSHSCECELP Trigger: TGGGAGCTCGCACTCACAGCTATGGGACAGCAGCCATGGGCTGTGTCTACATGGGCACTGCGGCCGCCCTGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233832.2 |
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| 3UTR GCA 72 bp | CACCCCAATAGTGAAGAGATGGGCAGGGATGCCCACTaGAGGGCACAGTCTCCCCTATCACGGAGCTGCCTG | + |
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Preference number: 3 (lower is better) Translates to: HPNSEEMGRDAH*RAQSPLSRSCL Trigger: CAGGCAGCTCCGTGATAGGGGAGACTGTGCCCTGCAGTGGGCATCCCTGCCCATCTCTTCACTATTGGGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| 3UTR CCA 72 bp | AGTCAGGCTGTGGGTCACACCCCAATAGTGAAGAGATaGGCAGGGATGCCCACTGCAGGGCACAGTCTCCCC | + |
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Preference number: 3 (lower is better) Translates to: SQAVGHTPIVKR*AGMPTAGHSLP Trigger: GGGGAGACTGTGCCCTGCAGTGGGCATCCCTGCCCATCTCTTCACTATTGGGGTGTGACCCACAGCCTGACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| 3UTR CCA 72 bp | TTTAACTCAAGAGACATCGTGTGGGGAGGGTGGATGTaGTCAGCCCTGACTCCTGGCAGTGGGGATACTCCC | + |
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Preference number: 3 (lower is better) Translates to: FNSRDIVWGGWM*SALTPGSGDTP Trigger: GGGAGTATCCCCACTGCCAGGAGTCAGGGCTGACCACATCCACCCTCCCCACACGATGTCTCTTGAGTTAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| 3UTR GCA 72 bp | TGTGAGCTGTGGAGAAGGACAGCATCAGGTATGGGGTaGTCCAGGTGTGATCCAAGAGCCTCCCAGGAAGAT | + |
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Preference number: 3 (lower is better) Translates to: CELWRRTASGMG*SRCDPRASQED Trigger: ATCTTCCTGGGAGGCTCTTGGATCACACCTGGAGCACCCCATACCTGATGCTGTCCTTCTCCACAGCTCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| 3UTR TCA 72 bp | AATAGCCCAGCAACAGAGTTAAGGGGATGGAGAAACTaGGGCCAAAGGCTGCCCTGCATCAATCCCTTTAAC | + |
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Preference number: 3 (lower is better) Translates to: NSPATELRGWRN*GQRLPCINPFN Trigger: GTTAAAGGGATTGATGCAGGGCAGCCTTTGGCCTCAGTTTCTCCATCCCCTTAACTCTGTTGCTGGGCTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| CDS-3UTR TCA 90 bp | CTTGAACAGGGCGGCCGCAGTGCCCATGTAGACACAGCCCATGGCTGCTGTCCCCGCCTAAGGCCGTGGTaGTGTAGGTCTTGCGATGAC | + |
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Preference number: 4 (lower is better) Translates to: LEQGGRSAHVDTAHGCCPRLRPW*CRSCDD Trigger: GTCATCGCAAGACCTACATCACCACGGCCTTAGGCG...GGGACAGCAGCCATGGGCTGTGTCTACATGGGCACTGCGGCCGCCCTGTTCAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233832.2 |
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| 3UTR CAA 72 bp | ACCTTGGGGGTAGGGAACAACTCCCAGCCTTCCAGCTaGCCGATCTTGAACAGGGCGGCCGCAGTGCCCATG | + |
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Preference number: 4 (lower is better) Translates to: TLGVGNNSQPSS*PILNRAAAVPM Trigger: CATGGGCACTGCGGCCGCCCTGTTCAAGATCGGCAAGCTGGAAGGCTGGGAGTTGTTCCCTACCCCCAAGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233832.2 |
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| CDS-3UTR CCA 90 bp | CCCAATAGTGAAGAGATGGGCAGGGATGCCCACTGCAGGGCACAGTCTCCCCTATGTACCGGCCGACTCTaGCCACTGCTTCCAGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: PNSEEMGRDAHCRAQSPLCTGRL*PLLPGW Trigger: CCACCCTGGAAGCAGTGGCCAGAGTCGGCCGGTACA...TAGGGGAGACTGTGCCCTGCAGTGGGCATCCCTGCCCATCTCTTCACTATTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| CDS-3UTR CCA 90 bp | GTGGGTCACACCCCAATAGTGAAGAGATGGGCAGGGATGCCCACTGCAGGGCACGTTCAGGGGGTCATCTaGCTTCTCTCGGACCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: VGHTPIVKRWAGMPTAGHVQGVI*LLSDLG Trigger: GCCCAGGTCCGAGAGAAGCCAGATGACCCCCTGAAC...GTGCCCTGCAGTGGGCATCCCTGCCCATCTCTTCACTATTGGGGTGTGACCCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| CDS-3UTR TCA 90 bp | GGCTCACACCTTGGGGGTAGGGAACAACTCCCAGCCTTCCAGCTTGCCGATCTTACCTGGGCACTGCAGTaGATGTGTACCGGCCGACTC | + |
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Preference number: 4 (lower is better) Translates to: GSHLGGREQLPAFQLADLTWALQ*MCTGRL Trigger: GAGTCGGCCGGTACACATTCACTGCAGTGCCCAGGT...AAGATCGGCAAGCTGGAAGGCTGGGAGTTGTTCCCTACCCCCAAGGTGTGAGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233832.2 |
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| CDS-3UTR CCA 90 bp | GTGGGTCACACCCCAATAGTGAAGAGATGGGCAGGGATGCCCACTGCAGGGCACGGCTTCTCTCGGACCTaGGCACTGACACAGGTGGTA | + |
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Preference number: 4 (lower is better) Translates to: VGHTPIVKRWAGMPTAGHGFSRT*ALTQVV Trigger: TACCACCTGTGTCAGTGCCCAGGTCCGAGAGAAGCC...GTGCCCTGCAGTGGGCATCCCTGCCCATCTCTTCACTATTGGGGTGTGACCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| CDS-3UTR TCA 90 bp | TCAGGCTGTGGGTCACACCCCAATAGTGAAGAGATGGGCAGGGATGCCCACTGCCGCCTAAGGCCGTGGTaGTGTAGGTCTTGCGATGAC | + |
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Preference number: 4 (lower is better) Translates to: SGCGSHPNSEEMGRDAHCRLRPW*CRSCDD Trigger: GTCATCGCAAGACCTACATCACCACGGCCTTAGGCG...GCAGTGGGCATCCCTGCCCATCTCTTCACTATTGGGGTGTGACCCACAGCCTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| CDS-3UTR GCA 90 bp | TCAGGCTGTGGGTCACACCCCAATAGTGAAGAGATGGGCAGGGATGCCCACTGCGGAATGGCCACTCACTaGGAGCTCCCAATGTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: SGCGSHPNSEEMGRDAHCGMATH*ELPMSG Trigger: GCCTGACATTGGGAGCTCGCAGTGAGTGGCCATTCC...GCAGTGGGCATCCCTGCCCATCTCTTCACTATTGGGGTGTGACCCACAGCCTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| CDS-3UTR CCA 90 bp | GCGTTTATTTGTCACAGGGGTTTGGCTCACACCTTGGGGGTAGGGAACAACTCCTGTACCGGCCGACTCTaGCCACTGCTTCCAGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: AFICHRGLAHTLGVGNNSCTGRL*PLLPGW Trigger: CCACCCTGGAAGCAGTGGCCAGAGTCGGCCGGTACA...GGAGTTGTTCCCTACCCCCAAGGTGTGAGCCAAACCCCTGTGACAAATAAACGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233832.2 |
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| CDS-3UTR TCA 90 bp | AGTTTGGGGCTAAGTCTGTCCGAGTTAGAGTCAGGCTGTGGGTCACACCCCAATCCGCGCAGCCACCAATaGAGTAGTTCAGGGGGTCAT | + |
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Preference number: 4 (lower is better) Translates to: SLGLSLSELESGCGSHPNPRSHQ*SSSGGH Trigger: ATGACCCCCTGAACTACTTCATTGGTGGCTGCGCGG...ATTGGGGTGTGACCCACAGCCTGACTCTAACTCGGACAGACTTAGCCCCAAACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| CDS-3UTR GCA 90 bp | AGAGGCAGTTTGGGGCTAAGTCTGTCCGAGTTAGAGTCAGGCTGTGGGTCACACCGCTCCAATAGCAGCTaGAGTGAATGTGTACCGGCC | + |
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Preference number: 4 (lower is better) Translates to: RGSLGLSLSELESGCGSHRSNSS*SECVPA Trigger: GGCCGGTACACATTCACTGCAGCTGCTATTGGAGCG...GTGTGACCCACAGCCTGACTCTAACTCGGACAGACTTAGCCCCAAACTGCCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| CDS TCA 90 bp | TGTGAGTGCGAGCTCCCAATGTCAGGCCTCCCGCGCAGCCACCAATaGAGTAGTTCAGGGGGTCATCTGGCTTCTCTCGGACCTGGGCAC | + |
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Preference number: 5 (lower is better) Translates to: CECELPMSGLPRSHQ*SSSGGHLASLGPGH Trigger: GTGCCCAGGTCCGAGAGAAGCCAGATGACCCCCTGAACTACTTCATTGGTGGCTGCGCGGGAGGCCTGACATTGGGAGCTCGCACTCACA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002452.8 |
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| CDS TCA 90 bp | ACTCACTGCGAGCTCCCAATGTCAGGCCTCCCGCGCAGCCACCAATaGAGTAGTTCAGGGGGTCATCTGGCTTCTCTCGGACCTGGGCAC | + |
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Preference number: 5 (lower is better) Translates to: THCELPMSGLPRSHQ*SSSGGHLASLGPGH Trigger: GTGCCCAGGTCCGAGAGAAGCCAGATGACCCCCTGAACTACTTCATTGGTGGCTGCGCGGGAGGCCTGACATTGGGAGCTCGCAGTGAGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233233.2 |
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| CDS CCA 90 bp | CAGGCCTCCCGCGCAGCCACCAATGAAGTAGTTCAGGGGGTCATCTaGCTTCTCTCGGACCTGGGCACTGACACAGGTGGTAAGGCCAAA | + |
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Preference number: 5 (lower is better) Translates to: QASRAATNEVVQGVI*LLSDLGTDTGGKAK Trigger: TTTGGCCTTACCACCTGTGTCAGTGCCCAGGTCCGAGAGAAGCCAGATGACCCCCTGAACTACTTCATTGGTGGCTGCGCGGGAGGCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000002452.8 ENSMUST00000233233.2 |
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| CDS TCA 72 bp | GGGTCATCTGGCTTCTCTCGGACCTGGGCACTGCAGTaGATGTGTACCGGCCGACTCTGGCCACTGCTTCCA | + |
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Preference number: 6 (lower is better) Translates to: GSSGFSRTWALQ*MCTGRLWPLLP Trigger: TGGAAGCAGTGGCCAGAGTCGGCCGGTACACATTCACTGCAGTGCCCAGGTCCGAGAGAAGCCAGATGACCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233832.2 |
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| CDS TCA 72 bp | GAGCTCCCAATGTCAGGCCTCCCGCGCAGCCACCAATaGAGTAGTTCAGGGGGTCATCTGGCTTCTCTCGGA | + |
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Preference number: 6 (lower is better) Translates to: ELPMSGLPRSHQ*SSSGGHLASLG Trigger: TCCGAGAGAAGCCAGATGACCCCCTGAACTACTTCATTGGTGGCTGCGCGGGAGGCCTGACATTGGGAGCTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000002452.8 ENSMUST00000233233.2 |
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| CDS CCA 72 bp | CGCGCAGCCACCAATGAAGTAGTTCAGGGGGTCATCTaGCTTCTCTCGGACCTGGGCACTGACACAGGTGGT | + |
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Preference number: 6 (lower is better) Translates to: RAATNEVVQGVI*LLSDLGTDTGG Trigger: ACCACCTGTGTCAGTGCCCAGGTCCGAGAGAAGCCAGATGACCCCCTGAACTACTTCATTGGTGGCTGCGCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000002452.8 ENSMUST00000233233.2 |
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