Pregenerated sensors for NDUFA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000016427

Ensembl transcript IDs: ENSMUST00000016571.8

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	TTTCATAACATGCGCATAGTATATAATATGCTGCATAGCCTTCTAACAGGAACACCTTGCCCCCGTTGGTaGATTTGTGGATGTACGCAG	+
Preference number: 4 (lower is better) Translates to: FHNMRIVYNMLHSLLTGTPCPRW*ICGCTQ Trigger: CTGCGTACATCCACAAATTCACCAACGGGGGCAAGG...TGTTCCTGTTAGAAGGCTATGCAGCATATTATATACTATGCGCATGTTATGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016571.8
CDS-3UTR CCA 90 bp	ATGCGCATAGTATATAATATGCTGCATAGCCTTCTAACAGGAACAGATGACCATCCGTTGGTGAATTTGTaGATGTACGCAGTGGACACC	+
Preference number: 4 (lower is better) Translates to: MRIVYNMLHSLLTGTDDHPLVNL*MYAVDT Trigger: GGTGTCCACTGCGTACATCCACAAATTCACCAACGG...ATGGTCATCTGTTCCTGTTAGAAGGCTATGCAGCATATTATATACTATGCGCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016571.8
CDS-3UTR CAA 90 bp	TTTCATAACATGCGCATAGTATATAATATGCTGCATAGCCTTCTAACAGGAACACCCCCGTTGGTGAATTaGTGGATGTACGCAGTGGAC	+
Preference number: 5 (lower is better) Translates to: FHNMRIVYNMLHSLLTGTPPLVN*WMYAVD Trigger: GTCCACTGCGTACATCCACAAATTCACCAACGGGGG...TGTTCCTGTTAGAAGGCTATGCAGCATATTATATACTATGCGCATGTTATGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016571.8
CDS-3UTR CAA 90 bp	AACATGCGCATAGTATATAATATGCTGCATAGCCTTCTAACAGGAACAGATGACGCAACTCGTTTTTCCTaGCCCCCGTTGGTGAATTTG	+
Preference number: 5 (lower is better) Translates to: NMRIVYNMLHSLLTGTDDATRFS*PPLVNL Trigger: CAAATTCACCAACGGGGGCAAGGAAAAACGAGTTGC...GTCATCTGTTCCTGTTAGAAGGCTATGCAGCATATTATATACTATGCGCATGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000016571.8
CDS TCA 72 bp	ATACGTCTATCGCGTTCCATCAGATACCACTGGTACTaGACACGAGCAACTCGTTTTTCCTTGCCCCCGTTG	+
Preference number: 6 (lower is better) Translates to: IRLSRSIRYHWY*TRATRFSLPPL Trigger: CAACGGGGGCAAGGAAAAACGAGTTGCTCGTGTTCAGTACCAGTGGTATCTGATGGAACGCGATAGACGTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000016571.8
CDS TCA 72 bp	CAATGTTTTCCAGGCCCTTGGACACATAGTAGCGATTaGCTCCAGAGATACGTCTATCGCGTTCCATCAGAT	+
Preference number: 6 (lower is better) Translates to: QCFPGPWTHSSD*LQRYVYRVPSD Trigger: ATCTGATGGAACGCGATAGACGTATCTCTGGAGTCAATCGCTACTATGTGTCCAAGGGCCTGGAAAACATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016571.8

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