RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NDST2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039308

Ensembl transcript IDs: ENSMUST00000047490.6, ENSMUST00000223679.2, ENSMUST00000224829.2, ENSMUST00000225000.2, ENSMUST00000225419.2

Found 359 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGAAAAGGCGAGACTCCATGTCCATGTCTGGGTACCTCCGGCCTTTaGTTCTCCCAAGACAGCGAGTCTTACCACCTTCAAGGCCCTGGC +
Preference number: 1 (lower is better)
Translates to: GKGETPCPCLGTSGL*FSQDSESYHLQGPG
Trigger: GCCAGGGCCTTGAAGGTGGTAAGACTCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGTCTCGCCTTTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR GCA 90 bp TTTGCTGGTAAAGAAAGACTGGGGCATCAGCCCACACTGGAATGTTaGAATTCTTCCCGAAGCCACAAGGGGGCTGGCTGGCCAAGCCGA +
Preference number: 1 (lower is better)
Translates to: FAGKERLGHQPTLEC*NSSRSHKGAGWPSR
Trigger: TCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGGCTGATGCCCCAGTCTTTCTTTACCAGCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000224829.2
ENSMUST00000225419.2
3UTR GCA 90 bp CCGTCAGGTGTCAGCAAGAAGGGTACTCAAGGCACCGACCCTCCTTaGCCAGGGAGAGATGTCTCTTCCAAACAGAACCTCTTTCCCTTT +
Preference number: 1 (lower is better)
Translates to: PSGVSKKGTQGTDPP*PGRDVSSKQNLFPF
Trigger: AAAGGGAAAGAGGTTCTGTTTGGAAGAGACATCTCTCCCTGGGCAAGGAGGGTCGGTGCCTTGAGTACCCTTCTTGCTGACACCTGACGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR TCA 90 bp GTTCAGAAAGGGGGTGATACCCAGGAACTTCTGGATGATCTCCATTaGGGCTGCCGGGTTGACACGAAGCTCCTGCCCATCCATAATCAG +
Preference number: 1 (lower is better)
Translates to: VQKGGDTQELLDDLH*GCRVDTKLLPIHNQ
Trigger: CTGATTATGGATGGGCAGGAGCTTCGTGTCAACCCGGCAGCCTCAATGGAGATCATCCAGAAGTTCCTGGGTATCACCCCCTTTCTGAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR CCA 90 bp ACACTGGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCTaGCCAAGCCGACTCAGCAGCTTTGATAGCTCCAAATTATGGTTC +
Preference number: 1 (lower is better)
Translates to: TLECCNSSRSHKGAG*PSRLSSFDSSKLWF
Trigger: GAACCATAATTTGGAGCTATCAAAGCTGCTGAGTCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCCAGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR CCA 90 bp AAAGGCGAGACTCCATGTCCATGTCTGGGTACCTCCGGCCTTTGCTTCTCCCAAAGTCGTGTCCAGCACTaGAGGAAGCGCACCAGGCTC +
Preference number: 2 (lower is better)
Translates to: KGETPCPCLGTSGLCFSQSRVQH*RKRTRL
Trigger: GAGCCTGGTGCGCTTCCTCCAGTGCTGGACACGACT...TTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGTCTCGCCTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR CAA 90 bp AGGAAAAGGCGAGACTCCATGTCCATGTCTGGGTACCTCCGGCCTTaGCTTCTCCCAAGACAGCGAGTCTTACCACCTTCAAGGCCCTGG +
Preference number: 2 (lower is better)
Translates to: RKRRDSMSMSGYLRP*LLPRQRVLPPSRPW
Trigger: CCAGGGCCTTGAAGGTGGTAAGACTCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGTCTCGCCTTTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR TCA 90 bp CCCAGGAACTTCTGGATGATCTCCATTGAGGCTGCCGGGTTGACACGAAGCTCCAGGCTCAGGAAGAAGTaGATAGCCGTGGTGCCTGTC +
Preference number: 2 (lower is better)
Translates to: PRNFWMISIEAAGLTRSSRLRKK*IAVVPV
Trigger: GACAGGCACCACGGCTATTCACTTCTTCCTGAGCCT...GGAGCTTCGTGTCAACCCGGCAGCCTCAATGGAGATCATCCAGAAGTTCCTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR TCA 90 bp GAGGCTGCCGGGTTGACACGAAGCTCCTGCCCATCCATAATCAGCAACTGTCCATGGGAAAACTGCTTGTaGCAGCTGGGTGCAGGCTCA +
Preference number: 2 (lower is better)
Translates to: EAAGLTRSSCPSIISNCPWENCL*QLGAGS
Trigger: TGAGCCTGCACCCAGCTGTCACAAGCAGTTTTCCCA...TGGACAGTTGCTGATTATGGATGGGCAGGAGCTTCGTGTCAACCCGGCAGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR TCA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGCTCAGGGGTAGGCATTaGCAGGTAAACTGCTGGGCA +
Preference number: 2 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKLRGRH*QVNCWA
Trigger: TGCCCAGCAGTTTACCTGTCAATGCCTACCCCTGAG...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
3UTR-3UTR TCA 90 bp GAAGGGTACTCAAGGCACCGACCCTCCTTGCCCAGGGAGAGATGTCTCTTCCAATCTGTGGTCCCACAATaGGGAACTTGGGGAGTCGAT +
Preference number: 2 (lower is better)
Translates to: EGYSRHRPSLPRERCLFQSVVPQ*GTWGVD
Trigger: ATCGACTCCCCAAGTTCCTCATTGTGGGACCACAGA...TTGGAAGAGACATCTCTCCCTGGGCAAGGAGGGTCGGTGCCTTGAGTACCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR CCA 90 bp ATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCTGGCCAAGCCGACTCAGTGTAGTTCAGAGCAATaGGGTCTCCATGTGCTCGCT +
Preference number: 2 (lower is better)
Translates to: MLQFFPKPQGGWLAKPTQCSSEQ*GLHVLA
Trigger: AGCGAGCACATGGAGACCCCATTGCTCTGAACTACA...CTGAGTCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR CAA 90 bp GTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTaGACTAAAGAGGCCATAGCGAAGGGGCCTCTCAGGGGTAGGCAT +
Preference number: 2 (lower is better)
Translates to: VNDIREARPQVDPTV*TKEAIAKGPLRGRH
Trigger: ATGCCTACCCCTGAGAGGCCCCTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
3UTR CAA 90 bp GTGATACCCAGGAACTTCTGGATGATCTCCATTGAGGCTGCCGGGTaGACACGAAGCTCCTGCCCATCCATAATCAGCAACTGTCCAGAG +
Preference number: 2 (lower is better)
Translates to: VIPRNFWMISIEAAG*TRSSCPSIISNCPE
Trigger: CTCTGGACAGTTGCTGATTATGGATGGGCAGGAGCTTCGTGTCAACCCGGCAGCCTCAATGGAGATCATCCAGAAGTTCCTGGGTATCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR TCA 90 bp ACTCCATGTCCATGTCTGGGTACCTCCGGCCTTTGCTTCTCCCAAGACAGCGAGGGCCTGAGAAGAAGCTaGAATCACTTGGTAGAAGGT +
Preference number: 2 (lower is better)
Translates to: TPCPCLGTSGLCFSQDSEGLRRS*NHLVEG
Trigger: ACCTTCTACCAAGTGATTTCAGCTTCTTCTCAGGCC...CTCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR TCA 90 bp GCAGGGTTGATAAGCACAGTGATTATCTTGGCTCTTGGCAGAAGGGCAGCCCCCAGGGGGCTTCGTTCCTaGGGAAAAAGTTCAAAGTAC +
Preference number: 2 (lower is better)
Translates to: AGLISTVIILALGRRAAPRGLRS*GKSSKY
Trigger: GTACTTTGAACTTTTTCCTCAGGAACGAAGCCCCCT...GGGGGCTGCCCTTCTGCCAAGAGCCAAGATAATCACTGTGCTTATCAACCCTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR CCA 90 bp AAAGGCGAGACTCCATGTCCATGTCTGGGTACCTCCGGCCTTTGCTTCTCCCAACACAGGTTTTCTCCTTaGACCAGATATCTTTGTGCC +
Preference number: 2 (lower is better)
Translates to: KGETPCPCLGTSGLCFSQHRFSP*TRYLCA
Trigger: GGCACAAAGATATCTGGTCCAAGGAGAAAACCTGTG...TTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGTCTCGCCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR CAA 90 bp GGTCCCACAATGAGGAACTTGGGGAGTCGATCACAGGTTTTCTCCTaGGACCAGATATCTTTGTGCCTCTTGTCATCACAGGGATTCTGC +
Preference number: 2 (lower is better)
Translates to: GPTMRNLGSRSQVFS*DQISLCLLSSQGFC
Trigger: GCAGAATCCCTGTGATGACAAGAGGCACAAAGATATCTGGTCCAAGGAGAAAACCTGTGATCGACTCCCCAAGTTCCTCATTGTGGGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR TCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATCTCAGGGGTAGGCATTaGCAGGTAAACTGCTGGGCA +
Preference number: 2 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNLRGRH*QVNCWA
Trigger: TGCCCAGCAGTTTACCTGTCAATGCCTACCCCTGAG...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
3UTR CAA 90 bp TCCAAACAGAACCTCTTTCCCTTTCCCCATAAAACCTTCCTTCCCTaGGCTTATGCTCTCCCACCTGAGGGTCCTCGTGTAGTTCAGAAA +
Preference number: 2 (lower is better)
Translates to: SKQNLFPFPHKTFLP*AYALPPEGPRVVQK
Trigger: TTTCTGAACTACACGAGGACCCTCAGGTGGGAGAGCATAAGCCAAGGGAAGGAAGGTTTTATGGGGAAAGGGAAAGAGGTTCTGTTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR CCA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAGCTAGGGCTCATATATaGCTCTATGAGCAACTGTCT +
Preference number: 2 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQARAHI*LYEQLS
Trigger: AGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
3UTR-3UTR CAA 90 bp GGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCTGGCCAAGCCGACTATTGAGGCTGCCGGGTaGACACGAAGCTCCTGCCCA +
Preference number: 3 (lower is better)
Translates to: GMLQFFPKPQGGWLAKPTIEAAG*TRSSCP
Trigger: TGGGCAGGAGCTTCGTGTCAACCCGGCAGCCTCAAT...AGTCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR TCA 72 bp GGGGGTGATACCCAGGAACTTCTGGATGATCTCCATTaGGGCTGCCGGGTTGACACGAAGCTCCTGCCCATC +
Preference number: 3 (lower is better)
Translates to: GGDTQELLDDLH*GCRVDTKLLPI
Trigger: GATGGGCAGGAGCTTCGTGTCAACCCGGCAGCCTCAATGGAGATCATCCAGAAGTTCCTGGGTATCACCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR CCA 72 bp ATCCGTAAGGAAAAGGCGAGACTCCATGTCCATGTCTaGGTACCTCCGGCCTTTGCTTCTCCCAAGACAGCG +
Preference number: 3 (lower is better)
Translates to: IRKEKARLHVHV*VPPAFASPKTA
Trigger: CGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGTCTCGCCTTTTCCTTACGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR CCA 72 bp TGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCTaGCCAAGCCGACTCAGCAGCTTTGATAGCTCCAAA +
Preference number: 3 (lower is better)
Translates to: CCNSSRSHKGAG*PSRLSSFDSSK
Trigger: TTTGGAGCTATCAAAGCTGCTGAGTCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR CAA 90 bp ACTCCATGTCCATGTCTGGGTACCTCCGGCCTTTGCTTCTCCCAAGACAGCGAGGCCCTGTCAGCAGGGTaGATAAGCACAGTGATTATC +
Preference number: 3 (lower is better)
Translates to: TPCPCLGTSGLCFSQDSEALSAG*ISTVII
Trigger: GATAATCACTGTGCTTATCAACCCTGCTGACAGGGC...CTCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR GCA 72 bp GAGACTCCATGTCCATGTCTGGGTACCTCCGGCCTTTaGTTCTCCCAAGACAGCGAGTCTTACCACCTTCAA +
Preference number: 3 (lower is better)
Translates to: ETPCPCLGTSGL*FSQDSESYHLQ
Trigger: TTGAAGGTGGTAAGACTCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR CCA 72 bp CCTCCCAGGTTCATAGGTCAAAGGTACCTAGTACCATaGGGGGATGCCAAGGGAAGCCCCTTTATTAGGTCC +
Preference number: 3 (lower is better)
Translates to: PPRFIGQRYLVP*GDAKGSPFIRS
Trigger: GGACCTAATAAAGGGGCTTCCCTTGGCATCCCCCCATGGTACTAGGTACCTTTGACCTATGAACCTGGGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
ENSMUST00000225419.2
3UTR-3UTR CAA 90 bp ACTCAAGGCACCGACCCTCCTTGCCCAGGGAGAGATGTCTCTTCCAAACAGAACAAAACCTTCCTTCCCTaGGCTTATGCTCTCCCACCT +
Preference number: 3 (lower is better)
Translates to: TQGTDPPCPGRDVSSKQNKTFLP*AYALPP
Trigger: AGGTGGGAGAGCATAAGCCAAGGGAAGGAAGGTTTT...GTTCTGTTTGGAAGAGACATCTCTCCCTGGGCAAGGAGGGTCGGTGCCTTGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR CCA 72 bp TTGCTGGTAAAGAAAGACTGGGGCATCAGCCCACACTaGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGG +
Preference number: 3 (lower is better)
Translates to: LLVKKDWGISPH*NVAILPEATRG
Trigger: CCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGGCTGATGCCCCAGTCTTTCTTTACCAGCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000224829.2
ENSMUST00000225419.2
3UTR-3UTR CAA 90 bp ATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCTGGCCAAGCCGACTCAGAAGTTAGCAGGCTTTTaGCTGGTAAAGAAAGACTGG +
Preference number: 3 (lower is better)
Translates to: MLQFFPKPQGGWLAKPTQKLAGF*LVKKDW
Trigger: CCAGTCTTTCTTTACCAGCAAAAAGCCTGCTAACTT...CTGAGTCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR CAA 90 bp GCTGCCGGGTTGACACGAAGCTCCTGCCCATCCATAATCAGCAACTGTCCAGAGAAGTTCAAAGTACTTTaGTGCAAGAGGGACAGGAGG +
Preference number: 3 (lower is better)
Translates to: AAGLTRSSCPSIISNCPEKFKVL*CKRDRR
Trigger: CCTCCTGTCCCTCTTGCACAAAAGTACTTTGAACTT...CTCTGGACAGTTGCTGATTATGGATGGGCAGGAGCTTCGTGTCAACCCGGCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR CAA 90 bp GCTCTCCCACCTGAGGGTCCTCGTGTAGTTCAGAAAGGGGGTGATACCCAGGAATTGGACCAGATATCTTaGTGCCTCTTGTCATCACAG +
Preference number: 3 (lower is better)
Translates to: ALPPEGPRVVQKGGDTQELDQIS*CLLSSQ
Trigger: CTGTGATGACAAGAGGCACAAAGATATCTGGTCCAA...TTCCTGGGTATCACCCCCTTTCTGAACTACACGAGGACCCTCAGGTGGGAGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR CAA 90 bp ACTCCATGTCCATGTCTGGGTACCTCCGGCCTTTGCTTCTCCCAAGACAGCGAGTCACAGGTTTTCTCCTaGGACCAGATATCTTTGTGC +
Preference number: 3 (lower is better)
Translates to: TPCPCLGTSGLCFSQDSESQVFS*DQISLC
Trigger: GCACAAAGATATCTGGTCCAAGGAGAAAACCTGTGA...CTCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR CAA 90 bp AAAGGCGAGACTCCATGTCCATGTCTGGGTACCTCCGGCCTTTGCTTCTCCCAAATATCTTTGTGCCTCTaGTCATCACAGGGATTCTGC +
Preference number: 3 (lower is better)
Translates to: KGETPCPCLGTSGLCFSQISLCL*SSQGFC
Trigger: GCAGAATCCCTGTGATGACAAGAGGCACAAAGATAT...TTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGTCTCGCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR CAA 90 bp GTGAAGTTAGCAGGCTTTTTGCTGGTAAAGAAAGACTGGGGCATCAGCCCACACCCCACAATGAGGAACTaGGGGAGTCGATCACAGGTT +
Preference number: 3 (lower is better)
Translates to: VKLAGFLLVKKDWGISPHPTMRN*GSRSQV
Trigger: AACCTGTGATCGACTCCCCAAGTTCCTCATTGTGGG...GTGTGGGCTGATGCCCCAGTCTTTCTTTACCAGCAAAAAGCCTGCTAACTTCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
3UTR-3UTR CAA 90 bp CTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACAAGTTAGCAGGCTTTTaGCTGGTAAAGAAAGACTGG +
Preference number: 3 (lower is better)
Translates to: LGTRKETTEYGLLTPSQDKLAGF*LVKKDW
Trigger: CCAGTCTTTCTTTACCAGCAAAAAGCCTGCTAACTT...GTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
3UTR-3UTR CAA 90 bp CAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAGTTAGCAGGCTTTTaGCTGGTAAAGAAAGACTGG +
Preference number: 3 (lower is better)
Translates to: QLGLIYGSMSNCLTSSPFKLAGF*LVKKDW
Trigger: CCAGTCTTTCTTTACCAGCAAAAAGCCTGCTAACTT...GAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
3UTR-3UTR CAA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTAAGTTAGCAGGCTTTTaGCTGGTAAAGAAAGACTGG +
Preference number: 3 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPKLAGF*LVKKDW
Trigger: CCAGTCTTTCTTTACCAGCAAAAAGCCTGCTAACTT...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
3UTR-3UTR CAA 90 bp ATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACATTAGAGAGGCCAAGTTAGCAGGCTTTTaGCTGGTAAAGAAAGACTGG +
Preference number: 3 (lower is better)
Translates to: MSNCLTSSPFNVNDIREAKLAGF*LVKKDW
Trigger: CCAGTCTTTCTTTACCAGCAAAAAGCCTGCTAACTT...GGCCTCTCTAATGTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp ACTCAAGGCACCGACCCTCCTTGCCCAGGGAGAGATGTCTCTTCCAAACAGAACGGGTCGAGGTGGGACTaGTGGCCGTGCAGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: TQGTDPPCPGRDVSSKQNGSRWD*WPCRAR
Trigger: CCTGGCCCTGCACGGCCACCAGTCCCACCTCGACCC...GTTCTGTTTGGAAGAGACATCTCTCCCTGGGCAAGGAGGGTCGGTGCCTTGAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp CTGGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCTGGCCAAGCCGACCTTTGGGGTCGAGGTaGGACTGGTGGCCGTGCAGG +
Preference number: 4 (lower is better)
Translates to: LECCNSSRSHKGAGWPSRPLGSR*DWWPCR
Trigger: CCTGCACGGCCACCAGTCCCACCTCGACCCCAAAGG...TCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp GCAGGGTTGATAAGCACAGTGATTATCTTGGCTCTTGGCAGAAGGGCAGCCCCCAGTCCTGCACCACGGTaGGGAGCCGGGCCCGCCGAA +
Preference number: 4 (lower is better)
Translates to: AGLISTVIILALGRRAAPSPAPR*GAGPAE
Trigger: TTCGGCGGGCCCGGCTCCCCACCGTGGTGCAGGACT...GGGGGCTGCCCTTCTGCCAAGAGCCAAGATAATCACTGTGCTTATCAACCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp AGCCCACAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCGGGTCGAGGTGGGACTaGTGGCCGTGCAGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: SPQLGLIYGSMSNCLTSSGSRWD*WPCRAR
Trigger: CCTGGCCCTGCACGGCCACCAGTCCCACCTCGACCC...GGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTGTGGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AACTGCTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCGGGTCGAGGTGGGACTaGTGGCCGTGCAGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: NCWARGRKPLNMVFLPLPGSRWD*WPCRAR
Trigger: CCTGGCCCTGCACGGCCACCAGTCCCACCTCGACCC...GGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAGCAGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGCCTTTGGGGTCGAGGTaGGACTGGTGGCCGTGCAGG +
Preference number: 4 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKPLGSR*DWWPCR
Trigger: CCTGCACGGCCACCAGTCCCACCTCGACCCCAAAGG...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AACTGCTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGTCCTGCACCACGGTaGGGAGCCGGGCCCGCCGAA +
Preference number: 4 (lower is better)
Translates to: NCWARGRKPLNMVFLPLPSPAPR*GAGPAE
Trigger: TTCGGCGGGCCCGGCTCCCCACCGTGGTGCAGGACT...GGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAGCAGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp ACCTCCGGCCTTTGCTTCTCCCAAGACAGCGAGTCTTACCACCTTCAAGGCCCTGGCCAGCTGCCCCACTaGTACTACAGTCTCCCAAGG +
Preference number: 4 (lower is better)
Translates to: TSGLCFSQDSESYHLQGPGQLPH*YYSLPR
Trigger: CCTTGGGAGACTGTAGTAGCAGTGGGGCAGCTGGCC...AGGGCCTTGAAGGTGGTAAGACTCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR GCA 90 bp CAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCTGGGACTGGTGGCCGTaGAGGGCCAGGGCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: QLGLIYGSMSNCLTSSPFWDWWP*RARASC
Trigger: GCAGCTGGCCCTGGCCCTGCACGGCCACCAGTCCCA...GAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp TTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCTGGCCAAGCCGACTCAGCAGAAGAGGCCACATGTTTaGCGGGGGAGCACCATGATG +
Preference number: 4 (lower is better)
Translates to: LQFFPKPQGGWLAKPTQQKRPHV*RGSTMM
Trigger: CATCATGGTGCTCCCCCGGCAAACATGTGGCCTCTT...CTGCTGAGTCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR GCA 90 bp CTGGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCTGGCCAAGCCGAGGTACCTCCGGCCTTTaGTTCTCCCAAGACAGCGAG +
Preference number: 4 (lower is better)
Translates to: LECCNSSRSHKGAGWPSRGTSGL*FSQDSE
Trigger: CTCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACC...TCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224829.2
CDS-3UTR CCA 90 bp CAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCGGGTCGAGGTGGGACTaGTGGCCGTGCAGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: QLGLIYGSMSNCLTSSPFGSRWD*WPCRAR
Trigger: CCTGGCCCTGCACGGCCACCAGTCCCACCTCGACCC...GAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GAAGGGTACTCAAGGCACCGACCCTCCTTGCCCAGGGAGAGATGTCTCTTCCAAGAACTGGTCCTGGCATaGAGAGCTCGGCTGGCCGAT +
Preference number: 4 (lower is better)
Translates to: EGYSRHRPSLPRERCLFQELVLA*RARLAD
Trigger: ATCGGCCAGCCGAGCTCTCCATGCCAGGACCAGTTC...TTGGAAGAGACATCTCTCCCTGGGCAAGGAGGGTCGGTGCCTTGAGTACCCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGTACACGCCAGAGTGGTaGGGGGCCACAGCATACCCC +
Preference number: 4 (lower is better)
Translates to: REARPQVDPTVLTKEAIAYTPEW*GATAYP
Trigger: GGGGTATGCTGTGGCCCCCCACCACTCTGGCGTGTA...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGGGCCAGCTGCCCCACTaGTACTACAGTCTCCCAAGG +
Preference number: 4 (lower is better)
Translates to: REARPQVDPTVLTKEAIAGQLPH*YYSLPR
Trigger: CCTTGGGAGACTGTAGTAGCAGTGGGGCAGCTGGCC...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GAAGGGTACTCAAGGCACCGACCCTCCTTGCCCAGGGAGAGATGTCTCTTCCAATGGCCTTGGGGCTGGTaGACACGTAGTAAGCCAGGA +
Preference number: 4 (lower is better)
Translates to: EGYSRHRPSLPRERCLFQWPWGW*TRSKPG
Trigger: TCCTGGCTTACTACGTGTCCACCAGCCCCAAGGCCA...TTGGAAGAGACATCTCTCCCTGGGCAAGGAGGGTCGGTGCCTTGAGTACCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCGTCATCACCAGGCAGTaGTCCTGGCTCCAGGCGGCT +
Preference number: 4 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLVITRQ*SWLQAA
Trigger: AGCCGCCTGGAGCCAGGACCACTGCCTGGTGATGAC...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AAAGGCGAGACTCCATGTCCATGTCTGGGTACCTCCGGCCTTTGCTTCTCCCAACCGAAGAACTGGTCCTaGCATGGAGAGCTCGGCTGG +
Preference number: 4 (lower is better)
Translates to: KGETPCPCLGTSGLCFSQPKNWS*HGELGW
Trigger: CCAGCCGAGCTCTCCATGCCAGGACCAGTTCTTCGG...TTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGTCTCGCCTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp AATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGAGTCCTGCACCACGGTaGGGAGCCGGGCCCGCCGAA +
Preference number: 4 (lower is better)
Translates to: NDIREARPQVDPTVLTKESPAPR*GAGPAE
Trigger: TTCGGCGGGCCCGGCTCCCCACCGTGGTGCAGGACT...CTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp CTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACTACACGCCAGAGTGGTaGGGGGCCACAGCATACCCC +
Preference number: 4 (lower is better)
Translates to: LGTRKETTEYGLLTPSQDYTPEW*GATAYP
Trigger: GGGGTATGCTGTGGCCCCCCACCACTCTGGCGTGTA...GTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGCGAGCAGGACGCAGATaGGGGTACTCCTCAGTGCTG +
Preference number: 4 (lower is better)
Translates to: REARPQVDPTVLTKEAIARAGRR*GYSSVL
Trigger: CAGCACTGAGGAGTACCCCCATCTGCGTCCTGCTCG...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp ACTGGGGCATCAGCCCACACTGGAATGTTGCAATTCTTCCCGAAGCCACAAGGGCGAGCAGGACGCAGATaGGGGTACTCCTCAGTGCTG +
Preference number: 4 (lower is better)
Translates to: TGASAHTGMLQFFPKPQGRAGRR*GYSSVL
Trigger: CAGCACTGAGGAGTACCCCCATCTGCGTCCTGCTCG...CCCTTGTGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGGCTGATGCCCCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR TCA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGCGCTGTATGCCATCATaGAGCCCCAAGTCCTGCACC +
Preference number: 4 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKRCMPS*SPKSCT
Trigger: GGTGCAGGACTTGGGGCTTCATGATGGCATACAGCG...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCGCACTCAGCAGGCTGTaGTCGCGGGCTCGGAAAAAG +
Preference number: 4 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLALSRL*SRARKK
Trigger: CTTTTTCCGAGCCCGCGAGCACAGCCTGCTGAGTGC...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp GTGCCTGTCTTCTGTGGTCCCACAATGAGGAACTTGGGGAGTCGATCACAGGTTGCACTCAGCAGGCTGTaGTCGCGGGCTCGGAAAAAG +
Preference number: 4 (lower is better)
Translates to: VPVFCGPTMRNLGSRSQVALSRL*SRARKK
Trigger: CTTTTTCCGAGCCCGCGAGCACAGCCTGCTGAGTGC...AACCTGTGATCGACTCCCCAAGTTCCTCATTGTGGGACCACAGAAGACAGGCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR GCA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGCAGAACTCCCTGCGGTaGTTCAGCAGCATGTCGTCC +
Preference number: 4 (lower is better)
Translates to: REARPQVDPTVLTKEAIAQNSLR*FSSMSS
Trigger: GGACGACATGCTGCTGAAGCACCGCAGGGAGTTCTG...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AAAGGCGAGACTCCATGTCCATGTCTGGGTACCTCCGGCCTTTGCTTCTCCCAACAGAACTCCCTGCGGTaGTTCAGCAGCATGTCGTCC +
Preference number: 4 (lower is better)
Translates to: KGETPCPCLGTSGLCFSQQNSLR*FSSMSS
Trigger: GGACGACATGCTGCTGAAGCACCGCAGGGAGTTCTG...TTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGTCTCGCCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR GCA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGGGTACCTCCGGCCTTTaGTTCTCCCAAGACAGCGAG +
Preference number: 4 (lower is better)
Translates to: REARPQVDPTVLTKEAIAGTSGL*FSQDSE
Trigger: CTCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACC...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGTGGCCTTGGGGCTGGTaGACACGTAGTAAGCCAGGA +
Preference number: 4 (lower is better)
Translates to: REARPQVDPTVLTKEAIAWPWGW*TRSKPG
Trigger: TCCTGGCTTACTACGTGTCCACCAGCCCCAAGGCCA...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAGGGTTCCTTGGCCTTaGGGCTGGTGGACACGTAGT +
Preference number: 4 (lower is better)
Translates to: REARPQVDPTVLTKEAIARVPWP*GWWTRS
Trigger: ACTACGTGTCCACCAGCCCCAAGGCCAAGGAACCCT...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp CACAAGGGGGCTGGCTGGCCAAGCCGACTCAGCAGCTTTGATAGCTCCAAATTAAGGGTTCCTTGGCCTTaGGGCTGGTGGACACGTAGT +
Preference number: 4 (lower is better)
Translates to: HKGAGWPSRLSSFDSSKLRVPWP*GWWTRS
Trigger: ACTACGTGTCCACCAGCCCCAAGGCCAAGGAACCCT...TAATTTGGAGCTATCAAAGCTGCTGAGTCGGCTTGGCCAGCCAGCCCCCTTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGGTTTCTGGAGGCCTTTaGGGTCGAGGTGGGACTGGT +
Preference number: 4 (lower is better)
Translates to: REARPQVDPTVLTKEAIAVSGGL*GRGGTG
Trigger: ACCAGTCCCACCTCGACCCCAAAGGCCTCCAGAAAC...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GCGAGACTCCATGTCCATGTCTGGGTACCTCCGGCCTTTGCTTCTCCCAAGACACGTTCGAGTTGTTTCTaGAGGCCTTTGGGGTCGAGG +
Preference number: 4 (lower is better)
Translates to: ARLHVHVWVPPAFASPKTRSSCF*RPLGSR
Trigger: CCTCGACCCCAAAGGCCTCCAGAAACAACTCGAACG...TGTCTTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGTCTCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp AACTGCTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCGTCATCACCAGGCAGTaGTCCTGGCTCCAGGCGGCT +
Preference number: 4 (lower is better)
Translates to: NCWARGRKPLNMVFLPLPVITRQ*SWLQAA
Trigger: AGCCGCCTGGAGCCAGGACCACTGCCTGGTGATGAC...GGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAGCAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GCCTGTCTTCTGTGGTCCCACAATGAGGAACTTGGGGAGTCGATCACAGGTTTTGTCATCACCAGGCAGTaGTCCTGGCTCCAGGCGGCT +
Preference number: 4 (lower is better)
Translates to: ACLLWSHNEELGESITGFVITRQ*SWLQAA
Trigger: AGCCGCCTGGAGCCAGGACCACTGCCTGGTGATGAC...AAAACCTGTGATCGACTCCCCAAGTTCCTCATTGTGGGACCACAGAAGACAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp AGCCCACAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCAGCTCGGCTGGCCGATaGCTGGCAATAAGCACGGGC +
Preference number: 4 (lower is better)
Translates to: SPQLGLIYGSMSNCLTSSSSAGR*LAISTG
Trigger: GCCCGTGCTTATTGCCAGCCATCGGCCAGCCGAGCT...GGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTGTGGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AAAGACTGGGGCATCAGCCCACACTGGAATGTTGCAATTCTTCCCGAAGCCACAAGCTCGGCTGGCCGATaGCTGGCAATAAGCACGGGC +
Preference number: 4 (lower is better)
Translates to: KDWGISPHWNVAILPEATSSAGR*LAISTG
Trigger: GCCCGTGCTTATTGCCAGCCATCGGCCAGCCGAGCT...TGTGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGGCTGATGCCCCAGTCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCCCGAAGAACTGGTCCTaGCATGGAGAGCTCGGCTGG +
Preference number: 4 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLPKNWS*HGELGW
Trigger: CCAGCCGAGCTCTCCATGCCAGGACCAGTTCTTCGG...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATAGTCCTGCACCACGGTaGGGAGCCGGGCCCGCCGAA +
Preference number: 4 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNSPAPR*GAGPAE
Trigger: TTCGGCGGGCCCGGCTCCCCACCGTGGTGCAGGACT...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp CTGGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCTGGCCAAGCCGATTGTTGAGCCTCATCTaGTCAGCTAGCACAGAGCGG +
Preference number: 4 (lower is better)
Translates to: LECCNSSRSHKGAGWPSRLLSLI*SASTER
Trigger: CCGCTCTGTGCTAGCTGACCAGATGAGGCTCAACAA...TCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGAGAGCTGCGAGTGGATaGGGTACACGCCAGAGTGGT +
Preference number: 4 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKRAASG*GTRQSG
Trigger: ACCACTCTGGCGTGTACCCCATCCACTCGCAGCTCT...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp CTGGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCTGGCCAAGCCGATCAGTGCTGGTCACCTaGATGCCCCAGACAGATTTC +
Preference number: 4 (lower is better)
Translates to: LECCNSSRSHKGAGWPSRSVLVT*MPQTDF
Trigger: GAAATCTGTCTGGGGCATCCAGGTGACCAGCACTGA...TCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCCGAGCAGGACGCAGATaGGGGTACTCCTCAGTGCTG +
Preference number: 4 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLRAGRR*GYSSVL
Trigger: CAGCACTGAGGAGTACCCCCATCTGCGTCCTGCTCG...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp GCATCAGCCCACACTGGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCAATCAGCAGCAGTATaGGGCGGTGCAGTTCCAGTT +
Preference number: 4 (lower is better)
Translates to: ASAHTGMLQFFPKPQGGWQSAAV*GGAVPV
Trigger: AACTGGAACTGCACCGCCTCATACTGCTGCTGATTG...CCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGGCTGATGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR TCA 90 bp CACAAGGGGGCTGGCTGGCCAAGCCGACTCAGCAGCTTTGATAGCTCCAAATTAAGAGGCGCTTCCCGGTaGGGTATGCAACAGCATCAA +
Preference number: 4 (lower is better)
Translates to: HKGAGWPSRLSSFDSSKLRGASR*GMQQHQ
Trigger: TTGATGCTGTTGCATACCTCACCGGGAAGCGCCTCT...TAATTTGGAGCTATCAAAGCTGCTGAGTCGGCTTGGCCAGCCAGCCCCCTTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR TCA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGAGGCTCAGGAAGAAGTaGATAGCCGTGGTGCCTGTC +
Preference number: 4 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKRLRKK*IAVVPV
Trigger: GACAGGCACCACGGCTATTCACTTCTTCCTGAGCCT...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGTGGGAAAACTGCTTGTaGCAGCTGGGTGCAGGCTCA +
Preference number: 4 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKWENCL*QLGAGS
Trigger: TGAGCCTGCACCCAGCTGTCACAAGCAGTTTTCCCA...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCCTGGATGATCTCCATTaGGGCTGCCGGGTTGACACG +
Preference number: 4 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLLDDLH*GCRVDT
Trigger: CGTGTCAACCCGGCAGCCTCAATGGAGATCATCCAG...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp TGGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCTGGCCAAGCCGACGCACGGGCTCATAAGTaGTGTGATTGGACTGGAAGA +
Preference number: 4 (lower is better)
Translates to: WNVAILPEATRGLAGQADARAHK*CDWTGR
Trigger: TCTTCCAGTCCAATCACAGCACTTATGAGCCCGTGC...GTCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR GCA 90 bp GGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCTGGCCAAGCCGACTCATCAGCCACCTTCATaGGAGTACCTTCTTTGCCCA +
Preference number: 4 (lower is better)
Translates to: GMLQFFPKPQGGWLAKPTHQPPS*EYLLCP
Trigger: TGGGCAAAGAAGGTACTCGCATGAAGGTGGCTGATG...AGTCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCAGGGTTCCTTGGCCTTaGGGCTGGTGGACACGTAGT +
Preference number: 4 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLRVPWP*GWWTRS
Trigger: ACTACGTGTCCACCAGCCCCAAGGCCAAGGAACCCT...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTCCTTTGGGGTCGAGGTaGGACTGGTGGCCGTGCAGG +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTPLGSR*DWWPCR
Trigger: CCTGCACGGCCACCAGTCCCACCTCGACCCCAAAGG...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGCGTTCGAGTTGTTTCTaGAGGCCTTTGGGGTCGAGG +
Preference number: 4 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKRSSCF*RPLGSR
Trigger: CCTCGACCCCAAAGGCCTCCAGAAACAACTCGAACG...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AAAGGCGAGACTCCATGTCCATGTCTGGGTACCTCCGGCCTTTGCTTCTCCCAAAGCACAGAGCGGTTGTaGAAGAGGTGTGGCTGCATG +
Preference number: 4 (lower is better)
Translates to: KGETPCPCLGTSGLCFSQSTERL*KRCGCM
Trigger: CATGCAGCCACACCTCTTCCACAACCGCTCTGTGCT...TTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGTCTCGCCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp AACTGCTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCCGAGCAGGACGCAGATaGGGGTACTCCTCAGTGCTG +
Preference number: 4 (lower is better)
Translates to: NCWARGRKPLNMVFLPLPRAGRR*GYSSVL
Trigger: CAGCACTGAGGAGTACCCCCATCTGCGTCCTGCTCG...GGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAGCAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGCTCCATGTCCATGTCTaGGTACCTCCGGCCTTTGCT +
Preference number: 4 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKLHVHV*VPPAFA
Trigger: AGCAAAGGCCGGAGGTACCCAGACATGGACATGGAG...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
3UTR CAA 72 bp ATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTaGACTAAAGAGGCCATAGCGAAGGGGCCTCTCAGG +
Preference number: 4 (lower is better)
Translates to: IREARPQVDPTV*TKEAIAKGPLR
Trigger: CCTGAGAGGCCCCTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
3UTR CAA 72 bp CGAGACTCCATGTCCATGTCTGGGTACCTCCGGCCTTaGCTTCTCCCAAGACAGCGAGTCTTACCACCTTCA +
Preference number: 4 (lower is better)
Translates to: RDSMSMSGYLRP*LLPRQRVLPPS
Trigger: TGAAGGTGGTAAGACTCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGTCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR TCA 90 bp GCGAGACTCCATGTCCATGTCTGGGTACCTCCGGCCTTTGCTTCTCCCAAGACACTCCTGCCCCAGTTGTaGGTATGCACTTTCCACAAA +
Preference number: 4 (lower is better)
Translates to: ARLHVHVWVPPAFASPKTLLPQL*VCTFHK
Trigger: TTTGTGGAAAGTGCATACTCACAACTGGGGCAGGAG...TGTCTTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGTCTCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR TCA 90 bp GCCTGTCTTCTGTGGTCCCACAATGAGGAACTTGGGGAGTCGATCACAGGTTTTCGCTGTATGCCATCATaGAGCCCCAAGTCCTGCACC +
Preference number: 4 (lower is better)
Translates to: ACLLWSHNEELGESITGFRCMPS*SPKSCT
Trigger: GGTGCAGGACTTGGGGCTTCATGATGGCATACAGCG...AAAACCTGTGATCGACTCCCCAAGTTCCTCATTGTGGGACCACAGAAGACAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR TCA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCAGAGGCGCTTCCCGGTaGGGTATGCAACAGCATCAA +
Preference number: 4 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLRGASR*GMQQHQ
Trigger: TTGATGCTGTTGCATACCTCACCGGGAAGCGCCTCT...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp ACTCCATGTCCATGTCTGGGTACCTCCGGCCTTTGCTTCTCCCAAGACAGCGAGTGGGGACTAAGGTCCTaGGTTTGTTCTGAGTGGTCA +
Preference number: 4 (lower is better)
Translates to: TPCPCLGTSGLCFSQDSEWGLRS*VCSEWS
Trigger: TGACCACTCAGAACAAACTCAGGACCTTAGTCCCCA...CTCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACCCAGACATGGACATGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR TCA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTGGGAAAACTGCTTGTaGCAGCTGGGTGCAGGCTCA +
Preference number: 4 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLWENCL*QLGAGS
Trigger: TGAGCCTGCACCCAGCTGTCACAAGCAGTTTTCCCA...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp CTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCAGGAACTTCTGGATaGTCTCCATTGAGGCTGCCG +
Preference number: 4 (lower is better)
Translates to: LGTRKETTEYGLLTPSQDPGTSG*SPLRLP
Trigger: CGGCAGCCTCAATGGAGATCATCCAGAAGTTCCTGG...GTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp CCCAGGAACTTCTGGATGATCTCCATTGAGGCTGCCGGGTTGACACGAAGCTCCATGGCCACAATCTCCTaGCCCAGTTGTGAGTATGCA +
Preference number: 4 (lower is better)
Translates to: PRNFWMISIEAAGLTRSSMATIS*PSCEYA
Trigger: TGCATACTCACAACTGGGGCAGGAGATTGTGGCCAT...GGAGCTTCGTGTCAACCCGGCAGCCTCAATGGAGATCATCCAGAAGTTCCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR GCA 90 bp CCACCTGAGGGTCCTCGTGTAGTTCAGAAAGGGGGTGATACCCAGGAACTTCTGACAGCACCCGCTGTATaGCATCATGAAGCCCCAAGT +
Preference number: 4 (lower is better)
Translates to: PPEGPRVVQKGGDTQELLTAPAV*HHEAPS
Trigger: ACTTGGGGCTTCATGATGGCATACAGCGGGTGCTGT...CAGAAGTTCCTGGGTATCACCCCCTTTCTGAACTACACGAGGACCCTCAGGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR GCA 90 bp CTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACAAGAGGCCACATGTTTaGCGGGGGAGCACCATGATG +
Preference number: 4 (lower is better)
Translates to: LGTRKETTEYGLLTPSQDKRPHV*RGSTMM
Trigger: CATCATGGTGCTCCCCCGGCAAACATGTGGCCTCTT...GTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCAAGAGGCCACATGTTTaGCGGGGGAGCACCATGATG +
Preference number: 4 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLKRPHV*RGSTMM
Trigger: CATCATGGTGCTCCCCCGGCAAACATGTGGCCTCTT...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGGCTCTCCACCTCGGATaGTTCGATCTAGTTCACGAG +
Preference number: 4 (lower is better)
Translates to: REARPQVDPTVLTKEAIAALHLG*FDLVHE
Trigger: CTCGTGAACTAGATCGAAGCATCCGAGGTGGAGAGC...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AACTGCTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCCCTTGGCCTTGGGGCTaGTGGACACGTAGTAAGCCA +
Preference number: 4 (lower is better)
Translates to: NCWARGRKPLNMVFLPLPPWPWG*WTRSKP
Trigger: TGGCTTACTACGTGTCCACCAGCCCCAAGGCCAAGG...GGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAGCAGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp CAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCGAGGCAAGGGTTCCTTaGCCTTGGGGCTGGTGGACA +
Preference number: 4 (lower is better)
Translates to: QLGLIYGSMSNCLTSSPFEARVP*PWGWWT
Trigger: TGTCCACCAGCCCCAAGGCCAAGGAACCCTTGCCTC...GAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GAAGTTAGCAGGCTTTTTGCTGGTAAAGAAAGACTGGGGCATCAGCCCACACTGGAGGCAAGGGTTCCTTaGCCTTGGGGCTGGTGGACA +
Preference number: 4 (lower is better)
Translates to: EVSRLFAGKERLGHQPTLEARVP*PWGWWT
Trigger: TGTCCACCAGCCCCAAGGCCAAGGAACCCTTGCCTC...CAGTGTGGGCTGATGCCCCAGTCTTTCTTTACCAGCAAAAAGCCTGCTAACTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp ATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACATTAGAGAGGCCCCTTTGGGGTCGAGGTaGGACTGGTGGCCGTGCAGG +
Preference number: 4 (lower is better)
Translates to: MSNCLTSSPFNVNDIREAPLGSR*DWWPCR
Trigger: CCTGCACGGCCACCAGTCCCACCTCGACCCCAAAGG...GGCCTCTCTAATGTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGCCCACAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCGTTTCTGGAGGCCTTTaGGGTCGAGGTGGGACTGGT +
Preference number: 4 (lower is better)
Translates to: SPQLGLIYGSMSNCLTSSVSGGL*GRGGTG
Trigger: ACCAGTCCCACCTCGACCCCAAAGGCCTCCAGAAAC...GGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTGTGGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GAGGGTCCTCGTGTAGTTCAGAAAGGGGGTGATACCCAGGAACTTCTGGATGATGTTTCTGGAGGCCTTTaGGGTCGAGGTGGGACTGGT +
Preference number: 4 (lower is better)
Translates to: EGPRVVQKGGDTQELLDDVSGGL*GRGGTG
Trigger: ACCAGTCCCACCTCGACCCCAAAGGCCTCCAGAAAC...ATCATCCAGAAGTTCCTGGGTATCACCCCCTTTCTGAACTACACGAGGACCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAGTCATCACCAGGCAGTaGTCCTGGCTCCAGGCGGCT +
Preference number: 4 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQVITRQ*SWLQAA
Trigger: AGCCGCCTGGAGCCAGGACCACTGCCTGGTGATGAC...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAAGCTCGGCTGGCCGATaGCTGGCAATAAGCACGGGC +
Preference number: 4 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQSSAGR*LAISTG
Trigger: GCCCGTGCTTATTGCCAGCCATCGGCCAGCCGAGCT...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp TTCAATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGAGCTCGGCTGGCCGATaGCTGGCAATAAGCACGGGC +
Preference number: 4 (lower is better)
Translates to: FNVNDIREARPQVDPTVLSSAGR*LAISTG
Trigger: GCCCGTGCTTATTGCCAGCCATCGGCCAGCCGAGCT...CAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTGAACTGGTCCTGGCATaGAGAGCTCGGCTGGCCGAT +
Preference number: 4 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPELVLA*RARLAD
Trigger: ATCGGCCAGCCGAGCTCTCCATGCCAGGACCAGTTC...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTCCGAAGAACTGGTCCTaGCATGGAGAGCTCGGCTGG +
Preference number: 4 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPPKNWS*HGELGW
Trigger: CCAGCCGAGCTCTCCATGCCAGGACCAGTTCTTCGG...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTTACACGCCAGAGTGGTaGGGGGCCACAGCATACCCC +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTYTPEW*GATAYP
Trigger: GGGGTATGCTGTGGCCCCCCACCACTCTGGCGTGTA...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGTCAGTGCTGGTCACCTaGATGCCCCAGACAGATTTC +
Preference number: 4 (lower is better)
Translates to: REARPQVDPTVLTKEAIASVLVT*MPQTDF
Trigger: GAAATCTGTCTGGGGCATCCAGGTGACCAGCACTGA...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTAGTCGTGTCCAGCACTaGAGGAAGCGCACCAGGCTC +
Preference number: 4 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPSRVQH*RKRTRL
Trigger: GAGCCTGGTGCGCTTCCTCCAGTGCTGGACACGACT...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
3UTR CAA 72 bp TGTCAGCAAGAAGGGTACTCAAGGCACCGACCCTCCTaGCCCAGGGAGAGATGTCTCTTCCAAACAGAACCT +
Preference number: 4 (lower is better)
Translates to: CQQEGYSRHRPS*PRERCLFQTEP
Trigger: AGGTTCTGTTTGGAAGAGACATCTCTCCCTGGGCAAGGAGGGTCGGTGCCTTGAGTACCCTTCTTGCTGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR TCA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGCTCCTGCCCCAGTTGTaGGTATGCACTTTCCACAAA +
Preference number: 4 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKLLPQL*VCTFHK
Trigger: TTTGTGGAAAGTGCATACTCACAACTGGGGCAGGAG...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp TGGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCTGGCCAAGCCGACGAAGGTTCTCATAGATaGCTAAGACATAGCGGCCAT +
Preference number: 4 (lower is better)
Translates to: WNVAILPEATRGLAGQADEGSHR*LRHSGH
Trigger: ATGGCCGCTATGTCTTAGTCATCTATGAGAACCTTC...GTCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR TCA 90 bp CTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACTCTGTGGTCCCACAATaGGGAACTTGGGGAGTCGAT +
Preference number: 4 (lower is better)
Translates to: LGTRKETTEYGLLTPSQDSVVPQ*GTWGVD
Trigger: ATCGACTCCCCAAGTTCCTCATTGTGGGACCACAGA...GTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp CAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCCTGGATGATCTCCATTaGGGCTGCCGGGTTGACACG +
Preference number: 4 (lower is better)
Translates to: QLGLIYGSMSNCLTSSPFLDDLH*GCRVDT
Trigger: CGTGTCAACCCGGCAGCCTCAATGGAGATCATCCAG...GAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAGGCCAGCTGCCCCACTaGTACTACAGTCTCCCAAGG +
Preference number: 4 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQGQLPH*YYSLPR
Trigger: CCTTGGGAGACTGTAGTAGCAGTGGGGCAGCTGGCC...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTGGCCAGCTGCCCCACTaGTACTACAGTCTCCCAAGG +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTGQLPH*YYSLPR
Trigger: CCTTGGGAGACTGTAGTAGCAGTGGGGCAGCTGGCC...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGATGGCCACAATCTCCTaGCCCAGTTGTGAGTATGCA +
Preference number: 4 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKMATIS*PSCEYA
Trigger: TGCATACTCACAACTGGGGCAGGAGATTGTGGCCAT...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCACTCAGCAGGCTGTaGTCGCGGGCTCGGAAAAAG +
Preference number: 4 (lower is better)
Translates to: NDIREARPQVDPTVLTKEALSRL*SRARKK
Trigger: CTTTTTCCGAGCCCGCGAGCACAGCCTGCTGAGTGC...CTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp TTCAATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGGCACTCAGCAGGCTGTaGTCGCGGGCTCGGAAAAAG +
Preference number: 4 (lower is better)
Translates to: FNVNDIREARPQVDPTVLALSRL*SRARKK
Trigger: CTTTTTCCGAGCCCGCGAGCACAGCCTGCTGAGTGC...CAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATTGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp CTGGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCTGGCCAAGCCGATGCGAGTACCTTCTTTaGCCACAAAGATGTCATCGA +
Preference number: 4 (lower is better)
Translates to: LECCNSSRSHKGAGWPSRCEYLL*PQRCHR
Trigger: TCGATGACATCTTTGTGGGCAAAGAAGGTACTCGCA...TCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR GCA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGCATCAGCCACCTTCATaGGAGTACCTTCTTTGCCCA +
Preference number: 4 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKHQPPS*EYLLCP
Trigger: TGGGCAAAGAAGGTACTCGCATGAAGGTGGCTGATG...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AGCCCACAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCTGCTGGTCACCTGGATaGCCCAGACAGATTTCCAGG +
Preference number: 4 (lower is better)
Translates to: SPQLGLIYGSMSNCLTSSCWSPG*PRQISR
Trigger: CCTGGAAATCTGTCTGGGGCATCCAGGTGACCAGCA...GGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTGTGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTAGGGTTCCTTGGCCTTaGGGCTGGTGGACACGTAGT +
Preference number: 4 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPRVPWP*GWWTRS
Trigger: ACTACGTGTCCACCAGCCCCAAGGCCAAGGAACCCT...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTGAACTGGTCCTGGCATaGAGAGCTCGGCTGGCCGAT +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTELVLA*RARLAD
Trigger: ATCGGCCAGCCGAGCTCTCCATGCCAGGACCAGTTC...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTCCGAAGAACTGGTCCTaGCATGGAGAGCTCGGCTGG +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTPKNWS*HGELGW
Trigger: CCAGCCGAGCTCTCCATGCCAGGACCAGTTCTTCGG...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AACTGCTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGCACAGAGCGGTTGTaGAAGAGGTGTGGCTGCATG +
Preference number: 4 (lower is better)
Translates to: NCWARGRKPLNMVFLPLPSTERL*KRCGCM
Trigger: CATGCAGCCACACCTCTTCCACAACCGCTCTGTGCT...GGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAGCAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAAGTCGTGTCCAGCACTaGAGGAAGCGCACCAGGCTC +
Preference number: 4 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQSRVQH*RKRTRL
Trigger: GAGCCTGGTGCGCTTCCTCCAGTGCTGGACACGACT...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGTGTAGTTCAGAGCAATaGGGTCTCCATGTGCTCGCT +
Preference number: 4 (lower is better)
Translates to: REARPQVDPTVLTKEAIACSSEQ*GLHVLA
Trigger: AGCGAGCACATGGAGACCCCATTGCTCTGAACTACA...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGTGTAGTTCAGAGCAATaGGGTCTCCATGTGCTCGCT +
Preference number: 4 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKCSSEQ*GLHVLA
Trigger: AGCGAGCACATGGAGACCCCATTGCTCTGAACTACA...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGCCCACAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCTCCATGTCCATGTCTaGGTACCTCCGGCCTTTGCT +
Preference number: 4 (lower is better)
Translates to: SPQLGLIYGSMSNCLTSSLHVHV*VPPAFA
Trigger: AGCAAAGGCCGGAGGTACCCAGACATGGACATGGAG...GGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTGTGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
3UTR CAA 72 bp AGGAACTTCTGGATGATCTCCATTGAGGCTGCCGGGTaGACACGAAGCTCCTGCCCATCCATAATCAGCAAC +
Preference number: 4 (lower is better)
Translates to: RNFWMISIEAAG*TRSSCPSIISN
Trigger: GTTGCTGATTATGGATGGGCAGGAGCTTCGTGTCAACCCGGCAGCCTCAATGGAGATCATCCAGAAGTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR TCA 90 bp AGCCCACAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCAATCAGCAGCAGTATaGGGCGGTGCAGTTCCAGTT +
Preference number: 4 (lower is better)
Translates to: SPQLGLIYGSMSNCLTSSQSAAV*GGAVPV
Trigger: AACTGGAACTGCACCGCCTCATACTGCTGCTGATTG...GGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTGTGGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp AATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGCGCTGTATGCCATCATaGAGCCCCAAGTCCTGCACC +
Preference number: 4 (lower is better)
Translates to: NDIREARPQVDPTVLTKERCMPS*SPKSCT
Trigger: GGTGCAGGACTTGGGGCTTCATGATGGCATACAGCG...CTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGGTCCTGAGTTTGTTCTaGGTGGTCAACAAAGCCTCA +
Preference number: 4 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKVLSLF*VVNKAS
Trigger: TGAGGCTTTGTTGACCACTCAGAACAAACTCAGGAC...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp GATATCTTTGTGCCTCTTGTCATCACAGGGATTCTGCCACAGGGGGCTTCGTTCAGAAGATCGTGTGGGTaGAGAGGCCACATGTTTGCC +
Preference number: 4 (lower is better)
Translates to: DIFVPLVITGILPQGASFRRSCG*RGHMFA
Trigger: GGCAAACATGTGGCCTCTTCACCCACACGATCTTCT...GAACGAAGCCCCCTGTGGCAGAATCCCTGTGATGACAAGAGGCACAAAGATATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR TCA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAGGGGGCTTCGTTCCTaGGGAAAAAGTTCAAAGTAC +
Preference number: 4 (lower is better)
Translates to: REARPQVDPTVLTKEAIARGLRS*GKSSKY
Trigger: GTACTTTGAACTTTTTCCTCAGGAACGAAGCCCCCT...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp AATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGCTGGATGATCTCCATTaGGGCTGCCGGGTTGACACG +
Preference number: 4 (lower is better)
Translates to: NDIREARPQVDPTVLTKELDDLH*GCRVDT
Trigger: CGTGTCAACCCGGCAGCCTCAATGGAGATCATCCAG...CTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCAGTTCAGAAAGGGGGTaGTACCCAGGAACTTCTGGA +
Preference number: 4 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLSSERG*YPGTSG
Trigger: TCCAGAAGTTCCTGGGTATCACCCCCTTTCTGAACT...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp GCTCTCCCACCTGAGGGTCCTCGTGTAGTTCAGAAAGGGGGTGATACCCAGGAACTTCCCGGTGAGGTATaGAACAGCATCAACAAAAAC +
Preference number: 4 (lower is better)
Translates to: ALPPEGPRVVQKGGDTQELPGEV*NSINKN
Trigger: GTTTTTGTTGATGCTGTTGCATACCTCACCGGGAAG...TTCCTGGGTATCACCCCCTTTCTGAACTACACGAGGACCCTCAGGTGGGAGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR GCA 90 bp CTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCATCAGCCACCTTCATaGGAGTACCTTCTTTGCCCA +
Preference number: 4 (lower is better)
Translates to: LGTRKETTEYGLLTPSQDHQPPS*EYLLCP
Trigger: TGGGCAAAGAAGGTACTCGCATGAAGGTGGCTGATG...GTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAACAGAACTCCCTGCGGTaGTTCAGCAGCATGTCGTCC +
Preference number: 4 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQQNSLR*FSSMSS
Trigger: GGACGACATGCTGCTGAAGCACCGCAGGGAGTTCTG...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTTGCTGGTCACCTGGATaGCCCAGACAGATTTCCAGG +
Preference number: 4 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPCWSPG*PRQISR
Trigger: CCTGGAAATCTGTCTGGGGCATCCAGGTGACCAGCA...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp GAAGTTAGCAGGCTTTTTGCTGGTAAAGAAAGACTGGGGCATCAGCCCACACTGTGCTGGTCACCTGGATaGCCCAGACAGATTTCCAGG +
Preference number: 4 (lower is better)
Translates to: EVSRLFAGKERLGHQPTLCWSPG*PRQISR
Trigger: CCTGGAAATCTGTCTGGGGCATCCAGGTGACCAGCA...CAGTGTGGGCTGATGCCCCAGTCTTTCTTTACCAGCAAAAAGCCTGCTAACTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTTGGCCTTGGGGCTGGTaGACACGTAGTAAGCCAGGA +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTWPWGW*TRSKPG
Trigger: TCCTGGCTTACTACGTGTCCACCAGCCCCAAGGCCA...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTGTTTCTGGAGGCCTTTaGGGTCGAGGTGGGACTGGT +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTVSGGL*GRGGTG
Trigger: ACCAGTCCCACCTCGACCCCAAAGGCCTCCAGAAAC...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTAGCACAGAGCGGTTGTaGAAGAGGTGTGGCTGCATG +
Preference number: 4 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPSTERL*KRCGCM
Trigger: CATGCAGCCACACCTCTTCCACAACCGCTCTGTGCT...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGAGAGCTGCGAGTGGATaGGGTACACGCCAGAGTGGT +
Preference number: 4 (lower is better)
Translates to: NDIREARPQVDPTVLTKERAASG*GTRQSG
Trigger: ACCACTCTGGCGTGTACCCCATCCACTCGCAGCTCT...CTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATAGTCGTGTCCAGCACTaGAGGAAGCGCACCAGGCTC +
Preference number: 4 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNSRVQH*RKRTRL
Trigger: GAGCCTGGTGCGCTTCCTCCAGTGCTGGACACGACT...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp CTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACACAGGAAGTCAGTGCTaGCATTGGAAGGAACAGGGA +
Preference number: 4 (lower is better)
Translates to: LGTRKETTEYGLLTPSQDTGSQC*HWKEQG
Trigger: TCCCTGTTCCTTCCAATGCCAGCACTGACTTCCTGT...GTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCACAGGAAGTCAGTGCTaGCATTGGAAGGAACAGGGA +
Preference number: 4 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLTGSQC*HWKEQG
Trigger: TCCCTGTTCCTTCCAATGCCAGCACTGACTTCCTGT...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGCCACCTTCAAGGCCCTaGCACCAAAATCCTTTATCT +
Preference number: 4 (lower is better)
Translates to: REARPQVDPTVLTKEAIAPPSRP*HQNPLS
Trigger: AGATAAAGGATTTTGGTGCCAGGGCCTTGAAGGTGG...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp CATCAGCCCACACTGGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCAAACCCAGGAACTTCTaGATGATCTCCATTGAGGCT +
Preference number: 4 (lower is better)
Translates to: HQPTLECCNSSRSHKGAGKPRNF*MISIEA
Trigger: AGCCTCAATGGAGATCATCCAGAAGTTCCTGGGTTT...GCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGGCTGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224829.2
CDS-3UTR TCA 90 bp CAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCCAATCAGCAGCAGTATaGGGCGGTGCAGTTCCAGTT +
Preference number: 4 (lower is better)
Translates to: QLGLIYGSMSNCLTSSPFQSAAV*GGAVPV
Trigger: AACTGGAACTGCACCGCCTCATACTGCTGCTGATTG...GAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp AACTGCTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCCTCCTGCCCCAGTTGTaGGTATGCACTTTCCACAAA +
Preference number: 4 (lower is better)
Translates to: NCWARGRKPLNMVFLPLPLLPQL*VCTFHK
Trigger: TTTGTGGAAAGTGCATACTCACAACTGGGGCAGGAG...GGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAGCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp CCTGTCAGCAGGGTTGATAAGCACAGTGATTATCTTGGCTCTTGGCAGAAGGGCCTCGGAAAAAGCCAATaGTACCCACGCCATACTCCA +
Preference number: 4 (lower is better)
Translates to: PVSRVDKHSDYLGSWQKGLGKSQ*YPRHTP
Trigger: TGGAGTATGGCGTGGGTATCATTGGCTTTTTCCGAG...GCCCTTCTGCCAAGAGCCAAGATAATCACTGTGCTTATCAACCCTGCTGACAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR TCA 90 bp ATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACATTAGAGAGGCCCGCTGTATGCCATCATaGAGCCCCAAGTCCTGCACC +
Preference number: 4 (lower is better)
Translates to: MSNCLTSSPFNVNDIREARCMPS*SPKSCT
Trigger: GGTGCAGGACTTGGGGCTTCATGATGGCATACAGCG...GGCCTCTCTAATGTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAAGAGGCGCTTCCCGGTaGGGTATGCAACAGCATCAA +
Preference number: 4 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQRGASR*GMQQHQ
Trigger: TTGATGCTGTTGCATACCTCACCGGGAAGCGCCTCT...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp GTGCCTGTCTTCTGTGGTCCCACAATGAGGAACTTGGGGAGTCGATCACAGGTTGTCCTGAGTTTGTTCTaGGTGGTCAACAAAGCCTCA +
Preference number: 4 (lower is better)
Translates to: VPVFCGPTMRNLGSRSQVVLSLF*VVNKAS
Trigger: TGAGGCTTTGTTGACCACTCAGAACAAACTCAGGAC...AACCTGTGATCGACTCCCCAAGTTCCTCATTGTGGGACCACAGAAGACAGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR TCA 90 bp CTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACAGGGGGCTTCGTTCCTaGGGAAAAAGTTCAAAGTAC +
Preference number: 4 (lower is better)
Translates to: LGTRKETTEYGLLTPSQDRGLRS*GKSSKY
Trigger: GTACTTTGAACTTTTTCCTCAGGAACGAAGCCCCCT...GTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAGGCTCAGGAAGAAGTaGATAGCCGTGGTGCCTGTC +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTRLRKK*IAVVPV
Trigger: GACAGGCACCACGGCTATTCACTTCTTCCTGAGCCT...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTTGGGAAAACTGCTTGTaGCAGCTGGGTGCAGGCTCA +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTWENCL*QLGAGS
Trigger: TGAGCCTGCACCCAGCTGTCACAAGCAGTTTTCCCA...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCGGCCTGAGAAGAAGCTaGAATCACTTGGTAGAAGGT +
Preference number: 4 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLGLRRS*NHLVEG
Trigger: ACCTTCTACCAAGTGATTTCAGCTTCTTCTCAGGCC...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp CTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACGGCCTGAGAAGAAGCTaGAATCACTTGGTAGAAGGT +
Preference number: 4 (lower is better)
Translates to: LGTRKETTEYGLLTPSQDGLRRS*NHLVEG
Trigger: ACCTTCTACCAAGTGATTTCAGCTTCTTCTCAGGCC...GTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAACCAGGAACTTCTGGATaGTCTCCATTGAGGCTGCCG +
Preference number: 4 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQPGTSG*SPLRLP
Trigger: CGGCAGCCTCAATGGAGATCATCCAGAAGTTCCTGG...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp AATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGCCAGGAACTTCTGGATaGTCTCCATTGAGGCTGCCG +
Preference number: 4 (lower is better)
Translates to: NDIREARPQVDPTVLTKEPGTSG*SPLRLP
Trigger: CGGCAGCCTCAATGGAGATCATCCAGAAGTTCCTGG...CTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGCTTCCCGGTGAGGTATaGAACAGCATCAACAAAAAC +
Preference number: 4 (lower is better)
Translates to: REARPQVDPTVLTKEAIALPGEV*NSINKN
Trigger: GTTTTTGTTGATGCTGTTGCATACCTCACCGGGAAG...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGTGCGAGTACCTTCTTTaGCCACAAAGATGTCATCGA +
Preference number: 4 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKCEYLL*PQRCHR
Trigger: TCGATGACATCTTTGTGGGCAAAGAAGGTACTCGCA...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATCAGAACTCCCTGCGGTaGTTCAGCAGCATGTCGTCC +
Preference number: 4 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNQNSLR*FSSMSS
Trigger: GGACGACATGCTGCTGAAGCACCGCAGGGAGTTCTG...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGTGCTGGTCACCTGGATaGCCCAGACAGATTTCCAGG +
Preference number: 4 (lower is better)
Translates to: NDIREARPQVDPTVLTKECWSPG*PRQISR
Trigger: CCTGGAAATCTGTCTGGGGCATCCAGGTGACCAGCA...CTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAGAGGCCACATGTTTaGCGGGGGAGCACCATGATG +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTKRPHV*RGSTMM
Trigger: CATCATGGTGCTCCCCCGGCAAACATGTGGCCTCTT...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGGACCAGATATCTTTGTaGCTCTTGTCATCACAGGGA +
Preference number: 4 (lower is better)
Translates to: REARPQVDPTVLTKEAIADQISL*LLSSQG
Trigger: TCCCTGTGATGACAAGAGGCACAAAGATATCTGGTC...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGGTACCTCCGGCCTTTaGTTCTCCCAAGACAGCGAG +
Preference number: 4 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNGTSGL*FSQDSE
Trigger: CTCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACC...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp CAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCTTGTTGAGCCTCATCTaGTCAGCTAGCACAGAGCGG +
Preference number: 4 (lower is better)
Translates to: QLGLIYGSMSNCLTSSPFLLSLI*SASTER
Trigger: CCGCTCTGTGCTAGCTGACCAGATGAGGCTCAACAA...GAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATAGAGCTGCGAGTGGATaGGGTACACGCCAGAGTGGT +
Preference number: 4 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNRAASG*GTRQSG
Trigger: ACCACTCTGGCGTGTACCCCATCCACTCGCAGCTCT...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp CAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCTCAGTGCTGGTCACCTaGATGCCCCAGACAGATTTC +
Preference number: 4 (lower is better)
Translates to: QLGLIYGSMSNCLTSSPFSVLVT*MPQTDF
Trigger: GAAATCTGTCTGGGGCATCCAGGTGACCAGCACTGA...GAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AACTGCTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCACAGGAAGTCAGTGCTaGCATTGGAAGGAACAGGGA +
Preference number: 4 (lower is better)
Translates to: NCWARGRKPLNMVFLPLPTGSQC*HWKEQG
Trigger: TCCCTGTTCCTTCCAATGCCAGCACTGACTTCCTGT...GGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAGCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGATACCCAGGAACTTCTaGATGATCTCCATTGAGGCT +
Preference number: 4 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKIPRNF*MISIEA
Trigger: AGCCTCAATGGAGATCATCCAGAAGTTCCTGGGTAT...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCCCACCTTCAAGGCCCTaGCACCAAAATCCTTTATCT +
Preference number: 4 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLPPSRP*HQNPLS
Trigger: AGATAAAGGATTTTGGTGCCAGGGCCTTGAAGGTGG...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAACTCCATGTCCATGTCTaGGTACCTCCGGCCTTTGCT +
Preference number: 4 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQLHVHV*VPPAFA
Trigger: AGCAAAGGCCGGAGGTACCCAGACATGGACATGGAG...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
3UTR CAA 72 bp AACCTCTTTCCCTTTCCCCATAAAACCTTCCTTCCCTaGGCTTATGCTCTCCCACCTGAGGGTCCTCGTGTA +
Preference number: 4 (lower is better)
Translates to: NLFPFPHKTFLP*AYALPPEGPRV
Trigger: TACACGAGGACCCTCAGGTGGGAGAGCATAAGCCAAGGGAAGGAAGGTTTTATGGGGAAAGGGAAAGAGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR TCA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTCTCGGAAAAAGCCAATaGTACCCACGCCATACTCCA +
Preference number: 4 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPLGKSQ*YPRHTP
Trigger: TGGAGTATGGCGTGGGTATCATTGGCTTTTTCCGAG...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp CTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACAAGCAAACTGTTTGTTaGGCCTCATCTGGTCAGCTA +
Preference number: 4 (lower is better)
Translates to: LGTRKETTEYGLLTPSQDKQTVC*ASSGQL
Trigger: TAGCTGACCAGATGAGGCTCAACAAACAGTTTGCTT...GTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAGAAGATCGTGTGGGTaGAGAGGCCACATGTTTGCC +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTRRSCG*RGHMFA
Trigger: GGCAAACATGTGGCCTCTTCACCCACACGATCTTCT...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAAGAAGATCGTGTGGGTaGAGAGGCCACATGTTTGCC +
Preference number: 4 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQRRSCG*RGHMFA
Trigger: GGCAAACATGTGGCCTCTTCACCCACACGATCTTCT...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATCTGTGGTCCCACAATaGGGAACTTGGGGAGTCGAT +
Preference number: 4 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQSVVPQ*GTWGVD
Trigger: ATCGACTCCCCAAGTTCCTCATTGTGGGACCACAGA...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp AAAGACTGGGGCATCAGCCCACACTGGAATGTTGCAATTCTTCCCGAAGCCACAGGCCTGAGAAGAAGCTaGAATCACTTGGTAGAAGGT +
Preference number: 4 (lower is better)
Translates to: KDWGISPHWNVAILPEATGLRRS*NHLVEG
Trigger: ACCTTCTACCAAGTGATTTCAGCTTCTTCTCAGGCC...TGTGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGGCTGATGCCCCAGTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224829.2
CDS-3UTR GCA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTATGGCCACAATCTCCTaGCCCAGTTGTGAGTATGCA +
Preference number: 4 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPMATIS*PSCEYA
Trigger: TGCATACTCACAACTGGGGCAGGAGATTGTGGCCAT...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAACAGCACCCGCTGTATaGCATCATGAAGCCCCAAGT +
Preference number: 4 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQTAPAV*HHEAPS
Trigger: ACTTGGGGCTTCATGATGGCATACAGCGGGTGCTGT...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTCATCAGCCACCTTCATaGGAGTACCTTCTTTGCCCA +
Preference number: 4 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPHQPPS*EYLLCP
Trigger: TGGGCAAAGAAGGTACTCGCATGAAGGTGGCTGATG...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp CTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACTCCGTAGGAATCCCATaGTCCAAAGCAAACTGTTTG +
Preference number: 4 (lower is better)
Translates to: LGTRKETTEYGLLTPSQDSVGIP*SKANCL
Trigger: CAAACAGTTTGCTTTGGAGCATGGGATTCCTACGGA...GTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCTCTCCACCTCGGATaGTTCGATCTAGTTCACGAG +
Preference number: 4 (lower is better)
Translates to: NDIREARPQVDPTVLTKEALHLG*FDLVHE
Trigger: CTCGTGAACTAGATCGAAGCATCCGAGGTGGAGAGC...CTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp GGGATAGTAAGTCAGCCAGCGTTGAAGATGGGTAGAATAGTAGCCAGGAACAAGGCTCTCCACCTCGGATaGTTCGATCTAGTTCACGAG +
Preference number: 4 (lower is better)
Translates to: GIVSQPALKMGRIVARNKALHLG*FDLVHE
Trigger: CTCGTGAACTAGATCGAAGCATCCGAGGTGGAGAGC...CTTGTTCCTGGCTACTATTCTACCCATCTTCAACGCTGGCTGACTTACTATCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR GCA 90 bp AATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGAATCTCCTCAAAGGTaGTGGGGCTGGGAAAACTGC +
Preference number: 4 (lower is better)
Translates to: NDIREARPQVDPTVLTKEESPQR*WGWENC
Trigger: GCAGTTTTCCCAGCCCCAGCACCTTTGAGGAGATTC...CTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTGAATCTCCTCAAAGGTaGTGGGGCTGGGAAAACTGC +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTESPQR*WGWENC
Trigger: GCAGTTTTCCCAGCCCCAGCACCTTTGAGGAGATTC...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp GCATCAGCCCACACTGGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGATAAAGACACTGATCTaGAAGAGGATGCGGATTAAG +
Preference number: 4 (lower is better)
Translates to: ASAHTGMLQFFPKPQGGWIKTLI*KRMRIK
Trigger: CTTAATCCGCATCCTCTTGCAGATCAGTGTCTTTAT...CCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGGCTGATGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CCA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACGAGGCAAGGGTTCCTTaGCCTTGGGGCTGGTGGACA +
Preference number: 4 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDEARVP*PWGWWT
Trigger: TGTCCACCAGCCCCAAGGCCAAGGAACCCTTGCCTC...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATCGTTCGAGTTGTTTCTaGAGGCCTTTGGGGTCGAGG +
Preference number: 4 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNRSSCF*RPLGSR
Trigger: CCTCGACCCCAAAGGCCTCCAGAAACAACTCGAACG...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGGATGTTTATTAAGGACATTTCTAGCCCACAGCTAGGGCTCATATATGGCTCTGAACTGGTCCTGGCATaGAGAGCTCGGCTGGCCGAT +
Preference number: 4 (lower is better)
Translates to: RMFIKDISSPQLGLIYGSELVLA*RARLAD
Trigger: ATCGGCCAGCCGAGCTCTCCATGCCAGGACCAGTTC...AGAGCCATATATGAGCCCTAGCTGTGGGCTAGAAATGTCCTTAATAAACATCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATAGCACAGAGCGGTTGTaGAAGAGGTGTGGCTGCATG +
Preference number: 4 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNSTERL*KRCGCM
Trigger: CATGCAGCCACACCTCTTCCACAACCGCTCTGTGCT...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATTGTTGAGCCTCATCTaGTCAGCTAGCACAGAGCGG +
Preference number: 4 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQLLSLI*SASTER
Trigger: CCGCTCTGTGCTAGCTGACCAGATGAGGCTCAACAA...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp TTCAATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGTCAGTGCTGGTCACCTaGATGCCCCAGACAGATTTC +
Preference number: 4 (lower is better)
Translates to: FNVNDIREARPQVDPTVLSVLVT*MPQTDF
Trigger: GAAATCTGTCTGGGGCATCCAGGTGACCAGCACTGA...CAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp GTGAAGTTAGCAGGCTTTTTGCTGGTAAAGAAAGACTGGGGCATCAGCCCACACTGTAGTTCAGAGCAATaGGGTCTCCATGTGCTCGCT +
Preference number: 4 (lower is better)
Translates to: VKLAGFLLVKKDWGISPHCSSEQ*GLHVLA
Trigger: AGCGAGCACATGGAGACCCCATTGCTCTGAACTACA...GTGTGGGCTGATGCCCCAGTCTTTCTTTACCAGCAAAAAGCCTGCTAACTTCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224829.2
CDS-3UTR CCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATCTCCATGTCCATGTCTaGGTACCTCCGGCCTTTGCT +
Preference number: 4 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNLHVHV*VPPAFA
Trigger: AGCAAAGGCCGGAGGTACCCAGACATGGACATGGAG...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp ATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACATTAGAGAGGCCCAATCAGCAGCAGTATaGGGCGGTGCAGTTCCAGTT +
Preference number: 4 (lower is better)
Translates to: MSNCLTSSPFNVNDIREAQSAAV*GGAVPV
Trigger: AACTGGAACTGCACCGCCTCATACTGCTGCTGATTG...GGCCTCTCTAATGTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp TTCAATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGCTCGGAAAAAGCCAATaGTACCCACGCCATACTCCA +
Preference number: 4 (lower is better)
Translates to: FNVNDIREARPQVDPTVLLGKSQ*YPRHTP
Trigger: TGGAGTATGGCGTGGGTATCATTGGCTTTTTCCGAG...CAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATTGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp AATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGTGGGGACTAAGGTCCTaGGTTTGTTCTGAGTGGTCA +
Preference number: 4 (lower is better)
Translates to: NDIREARPQVDPTVLTKEWGLRS*VCSEWS
Trigger: TGACCACTCAGAACAAACTCAGGACCTTAGTCCCCA...CTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTTGGGGACTAAGGTCCTaGGTTTGTTCTGAGTGGTCA +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTWGLRS*VCSEWS
Trigger: TGACCACTCAGAACAAACTCAGGACCTTAGTCCCCA...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp GAGGGTCCTCGTGTAGTTCAGAAAGGGGGTGATACCCAGGAACTTCTGGATGATAAGCAAACTGTTTGTTaGGCCTCATCTGGTCAGCTA +
Preference number: 4 (lower is better)
Translates to: EGPRVVQKGGDTQELLDDKQTVC*ASSGQL
Trigger: TAGCTGACCAGATGAGGCTCAACAAACAGTTTGCTT...ATCATCCAGAAGTTCCTGGGTATCACCCCCTTTCTGAACTACACGAGGACCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR TCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATTCTGTGGTCCCACAATaGGGAACTTGGGGAGTCGAT +
Preference number: 4 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNSVVPQ*GTWGVD
Trigger: ATCGACTCCCCAAGTTCCTCATTGTGGGACCACAGA...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp AATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGAGTTCAGAAAGGGGGTaGTACCCAGGAACTTCTGGA +
Preference number: 4 (lower is better)
Translates to: NDIREARPQVDPTVLTKESSERG*YPGTSG
Trigger: TCCAGAAGTTCCTGGGTATCACCCCCTTTCTGAACT...CTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTATGGCCACAATCTCCTaGCCCAGTTGTGAGTATGCA +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTMATIS*PSCEYA
Trigger: TGCATACTCACAACTGGGGCAGGAGATTGTGGCCAT...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAGCACGGGCTCATAAGTaGTGTGATTGGACTGGAAGA +
Preference number: 4 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQARAHK*CDWTGR
Trigger: TCTTCCAGTCCAATCACAGCACTTATGAGCCCGTGC...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AGCCCACAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCTTCCCGGTGAGGTATaGAACAGCATCAACAAAAAC +
Preference number: 4 (lower is better)
Translates to: SPQLGLIYGSMSNCLTSSLPGEV*NSINKN
Trigger: GTTTTTGTTGATGCTGTTGCATACCTCACCGGGAAG...GGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTGTGGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGCTCTCCACCTCGGATaGTTCGATCTAGTTCACGAG +
Preference number: 4 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNALHLG*FDLVHE
Trigger: CTCGTGAACTAGATCGAAGCATCCGAGGTGGAGAGC...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGAATCTCCTCAAAGGTaGTGGGGCTGGGAAAACTGC +
Preference number: 4 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNESPQR*WGWENC
Trigger: GCAGTTTTCCCAGCCCCAGCACCTTTGAGGAGATTC...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACGGTACCTCCGGCCTTTaGTTCTCCCAAGACAGCGAG +
Preference number: 4 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDGTSGL*FSQDSE
Trigger: CTCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACC...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGCCCACACTGGAATGTTaGAATTCTTCCCGAAGCCAC +
Preference number: 4 (lower is better)
Translates to: NDIREARPQVDPTVLTKEPTLEC*NSSRSH
Trigger: GTGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGG...CTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGGATGTTTATTAAGGACATTTCTAGCCCACAGCTAGGGCTCATATATGGCTCTTGGCCTTGGGGCTGGTaGACACGTAGTAAGCCAGGA +
Preference number: 4 (lower is better)
Translates to: RMFIKDISSPQLGLIYGSWPWGW*TRSKPG
Trigger: TCCTGGCTTACTACGTGTCCACCAGCCCCAAGGCCA...AGAGCCATATATGAGCCCTAGCTGTGGGCTAGAAATGTCCTTAATAAACATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp TTCAATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACAGGAAGTCAGTGCTaGCATTGGAAGGAACAGGGA +
Preference number: 4 (lower is better)
Translates to: FNVNDIREARPQVDPTVLTGSQC*HWKEQG
Trigger: TCCCTGTTCCTTCCAATGCCAGCACTGACTTCCTGT...CAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AACTGCTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCATACCCAGGAACTTCTaGATGATCTCCATTGAGGCT +
Preference number: 4 (lower is better)
Translates to: NCWARGRKPLNMVFLPLPIPRNF*MISIEA
Trigger: AGCCTCAATGGAGATCATCCAGAAGTTCCTGGGTAT...GGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAGCAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTCCACCTTCAAGGCCCTaGCACCAAAATCCTTTATCT +
Preference number: 4 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPPPSRP*HQNPLS
Trigger: AGATAAAGGATTTTGGTGCCAGGGCCTTGAAGGTGG...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp CAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCGAAGGTTCTCATAGATaGCTAAGACATAGCGGCCAT +
Preference number: 4 (lower is better)
Translates to: QLGLIYGSMSNCLTSSPFEGSHR*LRHSGH
Trigger: ATGGCCGCTATGTCTTAGTCATCTATGAGAACCTTC...GAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp TTCAATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGGTCCTGAGTTTGTTCTaGGTGGTCAACAAAGCCTCA +
Preference number: 4 (lower is better)
Translates to: FNVNDIREARPQVDPTVLVLSLF*VVNKAS
Trigger: TGAGGCTTTGTTGACCACTCAGAACAAACTCAGGAC...CAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp AGGATGTTTATTAAGGACATTTCTAGCCCACAGCTAGGGCTCATATATGGCTCTAGGCTCAGGAAGAAGTaGATAGCCGTGGTGCCTGTC +
Preference number: 4 (lower is better)
Translates to: RMFIKDISSPQLGLIYGSRLRKK*IAVVPV
Trigger: GACAGGCACCACGGCTATTCACTTCTTCCTGAGCCT...AGAGCCATATATGAGCCCTAGCTGTGGGCTAGAAATGTCCTTAATAAACATCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp AGGATGTTTATTAAGGACATTTCTAGCCCACAGCTAGGGCTCATATATGGCTCTCCAGGAACTTCTGGATaGTCTCCATTGAGGCTGCCG +
Preference number: 4 (lower is better)
Translates to: RMFIKDISSPQLGLIYGSPGTSG*SPLRLP
Trigger: CGGCAGCCTCAATGGAGATCATCCAGAAGTTCCTGG...AGAGCCATATATGAGCCCTAGCTGTGGGCTAGAAATGTCCTTAATAAACATCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATCCCACACTGGAATGTTaGAATTCTTCCCGAAGCCAC +
Preference number: 4 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNPTLEC*NSSRSH
Trigger: GTGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGG...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTCACAGGTTTTCTCCTTaGACCAGATATCTTTGTGCC +
Preference number: 4 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPHRFSP*TRYLCA
Trigger: GGCACAAAGATATCTGGTCCAAGGAGAAAACCTGTG...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp CAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCATACCCAGGAACTTCTaGATGATCTCCATTGAGGCT +
Preference number: 4 (lower is better)
Translates to: QLGLIYGSMSNCLTSSPFIPRNF*MISIEA
Trigger: AGCCTCAATGGAGATCATCCAGAAGTTCCTGGGTAT...GAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTCCACCTTCAAGGCCCTaGCACCAAAATCCTTTATCT +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTPPSRP*HQNPLS
Trigger: AGATAAAGGATTTTGGTGCCAGGGCCTTGAAGGTGG...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTGAAGGTTCTCATAGATaGCTAAGACATAGCGGCCAT +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTEGSHR*LRHSGH
Trigger: ATGGCCGCTATGTCTTAGTCATCTATGAGAACCTTC...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAGAAGGTTCTCATAGATaGCTAAGACATAGCGGCCAT +
Preference number: 4 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQEGSHR*LRHSGH
Trigger: ATGGCCGCTATGTCTTAGTCATCTATGAGAACCTTC...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp TTCAATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGAAGCAAACTGTTTGTTaGGCCTCATCTGGTCAGCTA +
Preference number: 4 (lower is better)
Translates to: FNVNDIREARPQVDPTVLKQTVC*ASSGQL
Trigger: TAGCTGACCAGATGAGGCTCAACAAACAGTTTGCTT...CAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACAGAAGATCGTGTGGGTaGAGAGGCCACATGTTTGCC +
Preference number: 4 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDRRSCG*RGHMFA
Trigger: GGCAAACATGTGGCCTCTTCACCCACACGATCTTCT...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATAGGGGGCTTCGTTCCTaGGGAAAAAGTTCAAAGTAC +
Preference number: 4 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNRGLRS*GKSSKY
Trigger: GTACTTTGAACTTTTTCCTCAGGAACGAAGCCCCCT...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACACAGCACCCGCTGTATaGCATCATGAAGCCCCAAGT +
Preference number: 4 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDTAPAV*HHEAPS
Trigger: ACTTGGGGCTTCATGATGGCATACAGCGGGTGCTGT...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTCTTCCCGGTGAGGTATaGAACAGCATCAACAAAAAC +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTLPGEV*NSINKN
Trigger: GTTTTTGTTGATGCTGTTGCATACCTCACCGGGAAG...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp TTCAATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGTGCGAGTACCTTCTTTaGCCACAAAGATGTCATCGA +
Preference number: 4 (lower is better)
Translates to: FNVNDIREARPQVDPTVLCEYLL*PQRCHR
Trigger: TCGATGACATCTTTGTGGGCAAAGAAGGTACTCGCA...CAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTTCCGTAGGAATCCCATaGTCCAAAGCAAACTGTTTG +
Preference number: 4 (lower is better)
Translates to: NVNDIREARPQVDPTVLTSVGIP*SKANCL
Trigger: CAAACAGTTTGCTTTGGAGCATGGGATTCCTACGGA...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGGATGTTTATTAAGGACATTTCTAGCCCACAGCTAGGGCTCATATATGGCTCTTTGTTGAGCCTCATCTaGTCAGCTAGCACAGAGCGG +
Preference number: 4 (lower is better)
Translates to: RMFIKDISSPQLGLIYGSLLSLI*SASTER
Trigger: CCGCTCTGTGCTAGCTGACCAGATGAGGCTCAACAA...AGAGCCATATATGAGCCCTAGCTGTGGGCTAGAAATGTCCTTAATAAACATCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp TTCAATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGCACAGGTTTTCTCCTTaGACCAGATATCTTTGTGCC +
Preference number: 4 (lower is better)
Translates to: FNVNDIREARPQVDPTVLHRFSP*TRYLCA
Trigger: GGCACAAAGATATCTGGTCCAAGGAGAAAACCTGTG...CAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACCTCCTGCCCCAGTTGTaGGTATGCACTTTCCACAAA +
Preference number: 4 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDLLPQL*VCTFHK
Trigger: TTTGTGGAAAGTGCATACTCACAACTGGGGCAGGAG...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATAAGCAAACTGTTTGTTaGGCCTCATCTGGTCAGCTA +
Preference number: 4 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNKQTVC*ASSGQL
Trigger: TAGCTGACCAGATGAGGCTCAACAAACAGTTTGCTT...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp CTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATTGCGAGTACCTTCTTTaGCCACAAAGATGTCATCGA +
Preference number: 4 (lower is better)
Translates to: LGLIYGSMSNCLTSSPFNCEYLL*PQRCHR
Trigger: TCGATGACATCTTTGTGGGCAAAGAAGGTACTCGCA...ATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp ATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACATTAGAGAGGCCGACCAGATATCTTTGTaGCTCTTGTCATCACAGGGA +
Preference number: 4 (lower is better)
Translates to: MSNCLTSSPFNVNDIREADQISL*LLSSQG
Trigger: TCCCTGTGATGACAAGAGGCACAAAGATATCTGGTC...GGCCTCTCTAATGTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACCCCACACTGGAATGTTaGAATTCTTCCCGAAGCCAC +
Preference number: 4 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDPTLEC*NSSRSH
Trigger: GTGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGG...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGGATGTTTATTAAGGACATTTCTAGCCCACAGCTAGGGCTCATATATGGCTCTTGTAGTTCAGAGCAATaGGGTCTCCATGTGCTCGCT +
Preference number: 4 (lower is better)
Translates to: RMFIKDISSPQLGLIYGSCSSEQ*GLHVLA
Trigger: AGCGAGCACATGGAGACCCCATTGCTCTGAACTACA...AGAGCCATATATGAGCCCTAGCTGTGGGCTAGAAATGTCCTTAATAAACATCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACCCATGGAGACAAGACTaGAACCAATCAGCAGCAGTA +
Preference number: 4 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDPWRQD*NQSAAV
Trigger: TACTGCTGCTGATTGGTTTCAGTCTTGTCTCCATGG...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACGTCCTGAGTTTGTTCTaGGTGGTCAACAAAGCCTCA +
Preference number: 4 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDVLSLF*VVNKAS
Trigger: TGAGGCTTTGTTGACCACTCAGAACAAACTCAGGAC...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR TCA 90 bp AGGATGTTTATTAAGGACATTTCTAGCCCACAGCTAGGGCTCATATATGGCTCTGGCCTGAGAAGAAGCTaGAATCACTTGGTAGAAGGT +
Preference number: 4 (lower is better)
Translates to: RMFIKDISSPQLGLIYGSGLRRS*NHLVEG
Trigger: ACCTTCTACCAAGTGATTTCAGCTTCTTCTCAGGCC...AGAGCCATATATGAGCCCTAGCTGTGGGCTAGAAATGTCCTTAATAAACATCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACTCCGTAGGAATCCCATaGTCCAAAGCAAACTGTTTG +
Preference number: 4 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDSVGIP*SKANCL
Trigger: CAAACAGTTTGCTTTGGAGCATGGGATTCCTACGGA...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR GCA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACGACCAGATATCTTTGTaGCTCTTGTCATCACAGGGA +
Preference number: 4 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDDQISL*LLSSQG
Trigger: TCCCTGTGATGACAAGAGGCACAAAGATATCTGGTC...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CCA 90 bp AGGATGTTTATTAAGGACATTTCTAGCCCACAGCTAGGGCTCATATATGGCTCTCACAGGTTTTCTCCTTaGACCAGATATCTTTGTGCC +
Preference number: 4 (lower is better)
Translates to: RMFIKDISSPQLGLIYGSHRFSP*TRYLCA
Trigger: GGCACAAAGATATCTGGTCCAAGGAGAAAACCTGTG...AGAGCCATATATGAGCCCTAGCTGTGGGCTAGAAATGTCCTTAATAAACATCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS CCA 90 bp GTCCTGCACCACGGTGGGGAGCCGGGCCCGCCGAAGAACTGGTCCTaGCATGGAGAGCTCGGCTGGCCGATGGCTGGCAATAAGCACGGG +
Preference number: 5 (lower is better)
Translates to: VLHHGGEPGPPKNWS*HGELGWPMAGNKHG
Trigger: CCCGTGCTTATTGCCAGCCATCGGCCAGCCGAGCTCTCCATGCCAGGACCAGTTCTTCGGCGGGCCCGGCTCCCCACCGTGGTGCAGGAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS CCA 90 bp CCCCAAGTCCTGCACCACGGTGGGGAGCCGGGCCCGCCGAAGAACTaGTCCTGGCATGGAGAGCTCGGCTGGCCGATGGCTGGCAATAAG +
Preference number: 5 (lower is better)
Translates to: PQVLHHGGEPGPPKN*SWHGELGWPMAGNK
Trigger: CTTATTGCCAGCCATCGGCCAGCCGAGCTCTCCATGCCAGGACCAGTTCTTCGGCGGGCCCGGCTCCCCACCGTGGTGCAGGACTTGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS GCA 90 bp AGTTGTTTCTGGAGGCCTTTGGGGTCGAGGTGGGACTGGTGGCCGTaGAGGGCCAGGGCCAGCTGCCCCACTGCTACTACAGTCTCCCAA +
Preference number: 5 (lower is better)
Translates to: SCFWRPLGSRWDWWP*RARASCPTATTVSQ
Trigger: TTGGGAGACTGTAGTAGCAGTGGGGCAGCTGGCCCTGGCCCTGCACGGCCACCAGTCCCACCTCGACCCCAAAGGCCTCCAGAAACAACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS CCA 90 bp GAGCCGGGCCCGCCGAAGAACTGGTCCTGGCATGGAGAGCTCGGCTaGCCGATGGCTGGCAATAAGCACGGGCTCATAAGTGCTGTGATT +
Preference number: 5 (lower is better)
Translates to: EPGPPKNWSWHGELG*PMAGNKHGLISAVI
Trigger: AATCACAGCACTTATGAGCCCGTGCTTATTGCCAGCCATCGGCCAGCCGAGCTCTCCATGCCAGGACCAGTTCTTCGGCGGGCCCGGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS-3UTR CAA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGGCGGTGCAGTTCCAGTaGCCGAGCAGGGCGCACCAC +
Preference number: 5 (lower is better)
Translates to: REARPQVDPTVLTKEAIAAVQFQ*PSRAHH
Trigger: GTGGTGCGCCCTGCTCGGCAACTGGAACTGCACCGC...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ACTCAAGGCACCGACCCTCCTTGCCCAGGGAGAGATGTCTCTTCCAAACAGAACGCGGTGCAGTTCCAGTaGCCGAGCAGGGCGCACCAC +
Preference number: 5 (lower is better)
Translates to: TQGTDPPCPGRDVSSKQNAVQFQ*PSRAHH
Trigger: GTGGTGCGCCCTGCTCGGCAACTGGAACTGCACCGC...GTTCTGTTTGGAAGAGACATCTCTCCCTGGGCAAGGAGGGTCGGTGCCTTGAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS CCA 90 bp CCCCACTGCTACTACAGTCTCCCAAGGGCAGAGGCAAGGGTTCCTTaGCCTTGGGGCTGGTGGACACGTAGTAAGCCAGGAATCCCATGG +
Preference number: 5 (lower is better)
Translates to: PHCYYSLPRAEARVP*PWGWWTRSKPGIPW
Trigger: CCATGGGATTCCTGGCTTACTACGTGTCCACCAGCCCCAAGGCCAAGGAACCCTTGCCTCTGCCCTTGGGAGACTGTAGTAGCAGTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS-3UTR CAA 90 bp GAGGCTGCCGGGTTGACACGAAGCTCCTGCCCATCCATAATCAGCAACTGTCCAGGCGGAAGGATTCACTaGGTAGTCCCGGAGCCCCAG +
Preference number: 5 (lower is better)
Translates to: EAAGLTRSSCPSIISNCPGGRIH*VVPEPQ
Trigger: CTGGGGCTCCGGGACTACCAAGTGAATCCTTCCGCC...TGGACAGTTGCTGATTATGGATGGGCAGGAGCTTCGTGTCAACCCGGCAGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CAA 90 bp CTGGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGGCTGGCTGGCCAAGCCGAGCTAGCACAGAGCGGTaGTGGAAGAGGTGTGGCTGC +
Preference number: 5 (lower is better)
Translates to: LECCNSSRSHKGAGWPSRASTER*WKRCGC
Trigger: GCAGCCACACCTCTTCCACAACCGCTCTGTGCTAGC...TCGGCTTGGCCAGCCAGCCCCCTTGTGGCTTCGGGAAGAATTGCAACATTCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS CCA 90 bp ACTTTCCACAAACACAAGGACCACAGGTTCCGTTCGAGTTGTTTCTaGAGGCCTTTGGGGTCGAGGTGGGACTGGTGGCCGTGCAGGGCC +
Preference number: 5 (lower is better)
Translates to: TFHKHKDHRFRSSCF*RPLGSRWDWWPCRA
Trigger: GGCCCTGCACGGCCACCAGTCCCACCTCGACCCCAAAGGCCTCCAGAAACAACTCGAACGGAACCTGTGGTCCTTGTGTTTGTGGAAAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS-3UTR CAA 90 bp GCTGGCTGGCCAAGCCGACTCAGCAGCTTTGATAGCTCCAAATTATGGTTCCGGTGTTTCTGGAGGCCTTaGGGGTCGAGGTGGGACTGG +
Preference number: 5 (lower is better)
Translates to: AGWPSRLSSFDSSKLWFRCFWRP*GSRWDW
Trigger: CCAGTCCCACCTCGACCCCAAAGGCCTCCAGAAACA...CCGGAACCATAATTTGGAGCTATCAAAGCTGCTGAGTCGGCTTGGCCAGCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CAA 90 bp ACCTCCGGCCTTTGCTTCTCCCAAGACAGCGAGTCTTACCACCTTCAAGGCCCTGAAGAGGCCACATGTTaGCCGGGGGAGCACCATGAT +
Preference number: 5 (lower is better)
Translates to: TSGLCFSQDSESYHLQGPEEATC*PGEHHD
Trigger: ATCATGGTGCTCCCCCGGCAAACATGTGGCCTCTTC...AGGGCCTTGAAGGTGGTAAGACTCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CAA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGGGGTACCTCCGGCCTTaGCTTCTCCCAAGACAGCGA +
Preference number: 5 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKGYLRP*LLPRQR
Trigger: TCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACCC...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ACTGGGGCATCAGCCCACACTGGAATGTTGCAATTCTTCCCGAAGCCACAAGGGGGGTACCTCCGGCCTTaGCTTCTCCCAAGACAGCGA +
Preference number: 5 (lower is better)
Translates to: TGASAHTGMLQFFPKPQGGYLRP*LLPRQR
Trigger: TCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACCC...CCCTTGTGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGGCTGATGCCCCAGT
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000224829.2
CDS-3UTR CAA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGGGGTACCTCCGGCCTTaGCTTCTCCCAAGACAGCGA +
Preference number: 5 (lower is better)
Translates to: REARPQVDPTVLTKEAIAGYLRP*LLPRQR
Trigger: TCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACCC...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS CCA 90 bp TGCTACTACAGTCTCCCAAGGGCAGAGGCAAGGGTTCCTTGGCCTTaGGGCTGGTGGACACGTAGTAAGCCAGGAATCCCATGGAGACAA +
Preference number: 5 (lower is better)
Translates to: CYYSLPRAEARVPWP*GWWTRSKPGIPWRQ
Trigger: TTGTCTCCATGGGATTCCTGGCTTACTACGTGTCCACCAGCCCCAAGGCCAAGGAACCCTTGCCTCTGCCCTTGGGAGACTGTAGTAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS-3UTR CAA 90 bp ATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACATTAGAGAGGCCGCGGTGCAGTTCCAGTaGCCGAGCAGGGCGCACCAC +
Preference number: 5 (lower is better)
Translates to: MSNCLTSSPFNVNDIREAAVQFQ*PSRAHH
Trigger: GTGGTGCGCCCTGCTCGGCAACTGGAACTGCACCGC...GGCCTCTCTAATGTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTGGCGGAAGGATTCACTaGGTAGTCCCGGAGCCCCAG +
Preference number: 5 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPGGRIH*VVPEPQ
Trigger: CTGGGGCTCCGGGACTACCAAGTGAATCCTTCCGCC...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp CAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCGGCGGAAGGATTCACTaGGTAGTCCCGGAGCCCCAG +
Preference number: 5 (lower is better)
Translates to: QLGLIYGSMSNCLTSSPFGGRIH*VVPEPQ
Trigger: CTGGGGCTCCGGGACTACCAAGTGAATCCTTCCGCC...GAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AACTGCTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCGCTAGCACAGAGCGGTaGTGGAAGAGGTGTGGCTGC +
Preference number: 5 (lower is better)
Translates to: NCWARGRKPLNMVFLPLPASTER*WKRCGC
Trigger: GCAGCCACACCTCTTCCACAACCGCTCTGTGCTAGC...GGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAGCAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCGAAGAGGCCACATGTTaGCCGGGGGAGCACCATGAT +
Preference number: 5 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLEEATC*PGEHHD
Trigger: ATCATGGTGCTCCCCCGGCAAACATGTGGCCTCTTC...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AGCCCACAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCATTGAGGCTGCCGGGTaGACACGAAGCTCCTGCCCA +
Preference number: 5 (lower is better)
Translates to: SPQLGLIYGSMSNCLTSSIEAAG*TRSSCP
Trigger: TGGGCAGGAGCTTCGTGTCAACCCGGCAGCCTCAAT...GGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTGTGGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAAGAGGCAAGGGTTCCTaGGCCTTGGGGCTGGTGGAC +
Preference number: 5 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQRGKGS*ALGLVD
Trigger: GTCCACCAGCCCCAAGGCCAAGGAACCCTTGCCTCT...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GTGCCTGTCTTCTGTGGTCCCACAATGAGGAACTTGGGGAGTCGATCACAGGTTCAGGTTCCGTTCGAGTaGTTTCTGGAGGCCTTTGGG +
Preference number: 5 (lower is better)
Translates to: VPVFCGPTMRNLGSRSQVQVPFE*FLEAFG
Trigger: CCCAAAGGCCTCCAGAAACAACTCGAACGGAACCTG...AACCTGTGATCGACTCCCCAAGTTCCTCATTGTGGGACCACAGAAGACAGGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CAA 90 bp TTCAATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGGGCGGAAGGATTCACTaGGTAGTCCCGGAGCCCCAG +
Preference number: 5 (lower is better)
Translates to: FNVNDIREARPQVDPTVLGGRIH*VVPEPQ
Trigger: CTGGGGCTCCGGGACTACCAAGTGAATCCTTCCGCC...CAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGGCCCACACTGGAATGTaGCAATTCTTCCCGAAGCCA +
Preference number: 5 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKAHTGM*QFFPKP
Trigger: TGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGGC...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGGCCCACACTGGAATGTaGCAATTCTTCCCGAAGCCA +
Preference number: 5 (lower is better)
Translates to: REARPQVDPTVLTKEAIAAHTGM*QFFPKP
Trigger: TGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGGC...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACGCGGTGCAGTTCCAGTaGCCGAGCAGGGCGCACCAC +
Preference number: 5 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDAVQFQ*PSRAHH
Trigger: GTGGTGCGCCCTGCTCGGCAACTGGAACTGCACCGC...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTTGTTTCTGGAGGCCTTaGGGGTCGAGGTGGGACTGG +
Preference number: 5 (lower is better)
Translates to: NVNDIREARPQVDPTVLTCFWRP*GSRWDW
Trigger: CCAGTCCCACCTCGACCCCAAAGGCCTCCAGAAACA...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTGCTAGCACAGAGCGGTaGTGGAAGAGGTGTGGCTGC +
Preference number: 5 (lower is better)
Translates to: NVNDIREARPQVDPTVLTASTER*WKRCGC
Trigger: GCAGCCACACCTCTTCCACAACCGCTCTGTGCTAGC...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp CTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCCACAATGAGGAACTaGGGGAGTCGATCACAGGTT +
Preference number: 5 (lower is better)
Translates to: LGTRKETTEYGLLTPSQDPTMRN*GSRSQV
Trigger: AACCTGTGATCGACTCCCCAAGTTCCTCATTGTGGG...GTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAGCACAGTGATTATCTaGGCTCTTGGCAGAAGGGCA +
Preference number: 5 (lower is better)
Translates to: REARPQVDPTVLTKEAIASTVII*ALGRRA
Trigger: TGCCCTTCTGCCAAGAGCCAAGATAATCACTGTGCT...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGATTGAGGCTGCCGGGTaGACACGAAGCTCCTGCCCA +
Preference number: 5 (lower is better)
Translates to: NDIREARPQVDPTVLTKEIEAAG*TRSSCP
Trigger: TGGGCAGGAGCTTCGTGTCAACCCGGCAGCCTCAAT...CTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGAAGTTGAAGGTGAAGTaGGGGACTAAGGTCCTGAGT +
Preference number: 5 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKKLKVK*GTKVLS
Trigger: ACTCAGGACCTTAGTCCCCAACTTCACCTTCAACTT...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGTTGAAGGTGAAGTaGGGGACTAAGGTCCTGAGT +
Preference number: 5 (lower is better)
Translates to: REARPQVDPTVLTKEAIAKLKVK*GTKVLS
Trigger: ACTCAGGACCTTAGTCCCCAACTTCACCTTCAACTT...CGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACATTAGAGAGGCCGCTAGCACAGAGCGGTaGTGGAAGAGGTGTGGCTGC +
Preference number: 5 (lower is better)
Translates to: MSNCLTSSPFNVNDIREAASTER*WKRCGC
Trigger: GCAGCCACACCTCTTCCACAACCGCTCTGTGCTAGC...GGCCTCTCTAATGTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GCTGCCGGGTTGACACGAAGCTCCTGCCCATCCATAATCAGCAACTGTCCAGAGAAAGCAAACTGTTTGTaGAGCCTCATCTGGTCAGCT +
Preference number: 5 (lower is better)
Translates to: AAGLTRSSCPSIISNCPEKANCL*SLIWSA
Trigger: AGCTGACCAGATGAGGCTCAACAAACAGTTTGCTTT...CTCTGGACAGTTGCTGATTATGGATGGGCAGGAGCTTCGTGTCAACCCGGCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CAA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTGAAGAGGCCACATGTTaGCCGGGGGAGCACCATGAT +
Preference number: 5 (lower is better)
Translates to: NVNDIREARPQVDPTVLTEEATC*PGEHHD
Trigger: ATCATGGTGCTCCCCCGGCAAACATGTGGCCTCTTC...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAGAAGAGGCCACATGTTaGCCGGGGGAGCACCATGAT +
Preference number: 5 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQEEATC*PGEHHD
Trigger: ATCATGGTGCTCCCCCGGCAAACATGTGGCCTCTTC...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCGCCCTGTCAGCAGGGTaGATAAGCACAGTGATTATC +
Preference number: 5 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLALSAG*ISTVII
Trigger: GATAATCACTGTGCTTATCAACCCTGCTGACAGGGC...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGGCCGACTCAGCAGCTTaGATAGCTCCAAATTATGGT +
Preference number: 5 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKADSAA*IAPNYG
Trigger: ACCATAATTTGGAGCTATCAAAGCTGCTGAGTCGGC...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAACAGGTTCCGTTCGAGTaGTTTCTGGAGGCCTTTGGG +
Preference number: 5 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQQVPFE*FLEAFG
Trigger: CCCAAAGGCCTCCAGAAACAACTCGAACGGAACCTG...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTCAGGTTCCGTTCGAGTaGTTTCTGGAGGCCTTTGGG +
Preference number: 5 (lower is better)
Translates to: NVNDIREARPQVDPTVLTQVPFE*FLEAFG
Trigger: CCCAAAGGCCTCCAGAAACAACTCGAACGGAACCTG...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGAAGTTCAAAGTACTTTaGTGCAAGAGGGACAGGAGG +
Preference number: 5 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKKFKVL*CKRDRR
Trigger: CCTCCTGTCCCTCTTGCACAAAAGTACTTTGAACTT...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGCCATAGCGAAGTTGGACCAGATATCTTaGTGCCTCTTGTCATCACAG +
Preference number: 5 (lower is better)
Translates to: EARPQVDPTVLTKEAIAKLDQIS*CLLSSQ
Trigger: CTGTGATGACAAGAGGCACAAAGATATCTGGTCCAA...CTTCGCTATGGCCTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AACTGCTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGCACAGTGATTATCTaGGCTCTTGGCAGAAGGGCA +
Preference number: 5 (lower is better)
Translates to: NCWARGRKPLNMVFLPLPSTVII*ALGRRA
Trigger: TGCCCTTCTGCCAAGAGCCAAGATAATCACTGTGCT...GGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAGCAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACTGTTTCTGGAGGCCTTaGGGGTCGAGGTGGGACTGG +
Preference number: 5 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDCFWRP*GSRWDW
Trigger: CCAGTCCCACCTCGACCCCAAAGGCCTCCAGAAACA...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp CTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACAAGTTCAAAGTACTTTaGTGCAAGAGGGACAGGAGG +
Preference number: 5 (lower is better)
Translates to: LGTRKETTEYGLLTPSQDKFKVL*CKRDRR
Trigger: CCTCCTGTCCCTCTTGCACAAAAGTACTTTGAACTT...GTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTGGACCAGATATCTTaGTGCCTCTTGTCATCACAG +
Preference number: 5 (lower is better)
Translates to: ARGRKPLNMVFLPLPRTLLDQIS*CLLSSQ
Trigger: CTGTGATGACAAGAGGCACAAAGATATCTGGTCCAA...GAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTCCCACAATGAGGAACTaGGGGAGTCGATCACAGGTT +
Preference number: 5 (lower is better)
Translates to: NVNDIREARPQVDPTVLTPTMRN*GSRSQV
Trigger: AACCTGTGATCGACTCCCCAAGTTCCTCATTGTGGG...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTGCCCTGTCAGCAGGGTaGATAAGCACAGTGATTATC +
Preference number: 5 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPALSAG*ISTVII
Trigger: GATAATCACTGTGCTTATCAACCCTGCTGACAGGGC...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACATTGAGGCTGCCGGGTaGACACGAAGCTCCTGCCCA +
Preference number: 5 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDIEAAG*TRSSCP
Trigger: TGGGCAGGAGCTTCGTGTCAACCCGGCAGCCTCAAT...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACGGGTACCTCCGGCCTTaGCTTCTCCCAAGACAGCGA +
Preference number: 5 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDGYLRP*LLPRQR
Trigger: TCGCTGTCTTGGGAGAAGCAAAGGCCGGAGGTACCC...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AACTGCTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCGCCGACTCAGCAGCTTaGATAGCTCCAAATTATGGT +
Preference number: 5 (lower is better)
Translates to: NCWARGRKPLNMVFLPLPADSAA*IAPNYG
Trigger: ACCATAATTTGGAGCTATCAAAGCTGCTGAGTCGGC...GGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAGCAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp CTCAGTGAAGTTAGCAGGCTTTTTGCTGGTAAAGAAAGACTGGGGCATCAGCCCAAGTTGAAGGTGAAGTaGGGGACTAAGGTCCTGAGT +
Preference number: 5 (lower is better)
Translates to: LSEVSRLFAGKERLGHQPKLKVK*GTKVLS
Trigger: ACTCAGGACCTTAGTCCCCAACTTCACCTTCAACTT...GGGCTGATGCCCCAGTCTTTCTTTACCAGCAAAAAGCCTGCTAACTTCACTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CAA 90 bp AACTGCTGGGCACGAGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAAAGCAAACTGTTTGTaGAGCCTCATCTGGTCAGCT +
Preference number: 5 (lower is better)
Translates to: NCWARGRKPLNMVFLPLPKANCL*SLIWSA
Trigger: AGCTGACCAGATGAGGCTCAACAAACAGTTTGCTTT...GGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCTCGTGCCCAGCAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AGCCCACAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCTCACAGGTTTTCTCCTaGGACCAGATATCTTTGTGC +
Preference number: 5 (lower is better)
Translates to: SPQLGLIYGSMSNCLTSSSQVFS*DQISLC
Trigger: GCACAAAGATATCTGGTCCAAGGAGAAAACCTGTGA...GGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTGTGGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAAGCACAGTGATTATCTaGGCTCTTGGCAGAAGGGCA +
Preference number: 5 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQSTVII*ALGRRA
Trigger: TGCCCTTCTGCCAAGAGCCAAGATAATCACTGTGCT...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAGCCCTGTCAGCAGGGTaGATAAGCACAGTGATTATC +
Preference number: 5 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQALSAG*ISTVII
Trigger: GATAATCACTGTGCTTATCAACCCTGCTGACAGGGC...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACCAGGTTCCGTTCGAGTaGTTTCTGGAGGCCTTTGGG +
Preference number: 5 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDQVPFE*FLEAFG
Trigger: CCCAAAGGCCTCCAGAAACAACTCGAACGGAACCTG...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTAAAGCAAACTGTTTGTaGAGCCTCATCTGGTCAGCT +
Preference number: 5 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPKANCL*SLIWSA
Trigger: AGCTGACCAGATGAGGCTCAACAAACAGTTTGCTTT...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp CAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCTCCAAAGCAAACTGTTaGTTGAGCCTCATCTGGTCA +
Preference number: 5 (lower is better)
Translates to: QLGLIYGSMSNCLTSSPFSKANC*LSLIWS
Trigger: TGACCAGATGAGGCTCAACAAACAGTTTGCTTTGGA...GAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp CAGCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCATATCTTTGTGCCTCTaGTCATCACAGGGATTCTGC +
Preference number: 5 (lower is better)
Translates to: QLGLIYGSMSNCLTSSPFISLCL*SSQGFC
Trigger: GCAGAATCCCTGTGATGACAAGAGGCACAAAGATAT...GAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACATTAGAGAGGCCGCCCTGTCAGCAGGGTaGATAAGCACAGTGATTATC +
Preference number: 5 (lower is better)
Translates to: MSNCLTSSPFNVNDIREAALSAG*ISTVII
Trigger: GATAATCACTGTGCTTATCAACCCTGCTGACAGGGC...GGCCTCTCTAATGTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AGGAAGGAAACCACTGAATATGGTCTTCTTACCCCTTCCCAGGACCCTCTTCCTGTAAGTCAGCCAGCGTaGAAGATGGGTAGAATAGTA +
Preference number: 5 (lower is better)
Translates to: RKETTEYGLLTPSQDPLPVSQPA*KMGRIV
Trigger: TACTATTCTACCCATCTTCAACGCTGGCTGACTTAC...AGGAAGAGGGTCCTGGGAAGGGGTAAGAAGACCATATTCAGTGGTTTCCTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp CTCAGTGAAGTTAGCAGGCTTTTTGCTGGTAAAGAAAGACTGGGGCATCAGCCCAGCAAAGCAAACTGTTaGTTGAGCCTCATCTGGTCA +
Preference number: 5 (lower is better)
Translates to: LSEVSRLFAGKERLGHQPSKANC*LSLIWS
Trigger: TGACCAGATGAGGCTCAACAAACAGTTTGCTTTGCT...GGGCTGATGCCCCAGTCTTTCTTTACCAGCAAAAAGCCTGCTAACTTCACTGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225419.2
CDS-3UTR CAA 90 bp TTCAATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGTTGGACCAGATATCTTaGTGCCTCTTGTCATCACAG +
Preference number: 5 (lower is better)
Translates to: FNVNDIREARPQVDPTVLLDQIS*CLLSSQ
Trigger: CTGTGATGACAAGAGGCACAAAGATATCTGGTCCAA...CAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTTCACAGGTTTTCTCCTaGGACCAGATATCTTTGTGC +
Preference number: 5 (lower is better)
Translates to: NVNDIREARPQVDPTVLTSQVFS*DQISLC
Trigger: GCACAAAGATATCTGGTCCAAGGAGAAAACCTGTGA...AGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACCCCACAATGAGGAACTaGGGGAGTCGATCACAGGTT +
Preference number: 5 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDPTMRN*GSRSQV
Trigger: AACCTGTGATCGACTCCCCAAGTTCCTCATTGTGGG...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp AATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGACTAAAGAGGTAAGTCAGCCAGCGTaGAAGATGGGTAGAATAGTA +
Preference number: 5 (lower is better)
Translates to: NDIREARPQVDPTVLTKEVSQPA*KMGRIV
Trigger: TACTATTCTACCCATCTTCAACGCTGGCTGACTTAC...CTCTTTAGTCAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp TTCAATGTGAATGACATTAGAGAGGCCAGGCCACAGGTAGATCCCACTGTCTTGGTAAGTCAGCCAGCGTaGAAGATGGGTAGAATAGTA +
Preference number: 5 (lower is better)
Translates to: FNVNDIREARPQVDPTVLVSQPA*KMGRIV
Trigger: TACTATTCTACCCATCTTCAACGCTGGCTGACTTAC...CAAGACAGTGGGATCTACCTGTGGCCTGGCCTCTCTAATGTCATTCACATTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp GCTAGGGCTCATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAAGTAAGTCAGCCAGCGTaGAAGATGGGTAGAATAGTA +
Preference number: 5 (lower is better)
Translates to: ARAHIWLYEQLSDLIPIQVSQPA*KMGRIV
Trigger: TACTATTCTACCCATCTTCAACGCTGGCTGACTTAC...TTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATATGAGCCCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000224829.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACATTAGAGAGGCCGCCGACTCAGCAGCTTaGATAGCTCCAAATTATGGT +
Preference number: 5 (lower is better)
Translates to: MSNCLTSSPFNVNDIREAADSAA*IAPNYG
Trigger: ACCATAATTTGGAGCTATCAAAGCTGCTGAGTCGGC...GGCCTCTCTAATGTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACGCCCACACTGGAATGTaGCAATTCTTCCCGAAGCCA +
Preference number: 5 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDAHTGM*QFFPKP
Trigger: TGGCTTCGGGAAGAATTGCAACATTCCAGTGTGGGC...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACATTAGAGAGGCCAAAGCAAACTGTTTGTaGAGCCTCATCTGGTCAGCT +
Preference number: 5 (lower is better)
Translates to: MSNCLTSSPFNVNDIREAKANCL*SLIWSA
Trigger: AGCTGACCAGATGAGGCTCAACAAACAGTTTGCTTT...GGCCTCTCTAATGTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACATTAGAGAGGCCTCCAAAGCAAACTGTTaGTTGAGCCTCATCTGGTCA +
Preference number: 5 (lower is better)
Translates to: MSNCLTSSPFNVNDIREASKANC*LSLIWS
Trigger: TGACCAGATGAGGCTCAACAAACAGTTTGCTTTGGA...GGCCTCTCTAATGTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACATTAGAGAGGCCAAGTTCAAAGTACTTTaGTGCAAGAGGGACAGGAGG +
Preference number: 5 (lower is better)
Translates to: MSNCLTSSPFNVNDIREAKFKVL*CKRDRR
Trigger: CCTCCTGTCCCTCTTGCACAAAAGTACTTTGAACTT...GGCCTCTCTAATGTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACATTAGAGAGGCCATATCTTTGTGCCTCTaGTCATCACAGGGATTCTGC +
Preference number: 5 (lower is better)
Translates to: MSNCLTSSPFNVNDIREAISLCL*SSQGFC
Trigger: GCAGAATCCCTGTGATGACAAGAGGCACAAAGATAT...GGCCTCTCTAATGTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS-3UTR CAA 90 bp ATATATGGCTCTATGAGCAACTGTCTGACCTCATCCCCATTCAATGTGAATGACATATCTTTGTGCCTCTaGTCATCACAGGGATTCTGC +
Preference number: 5 (lower is better)
Translates to: IYGSMSNCLTSSPFNVNDISLCL*SSQGFC
Trigger: GCAGAATCCCTGTGATGACAAGAGGCACAAAGATAT...GTCATTCACATTGAATGGGGATGAGGTCAGACAGTTGCTCATAGAGCCATATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS CCA 72 bp CTGCACCACGGTGGGGAGCCGGGCCCGCCGAAGAACTaGTCCTGGCATGGAGAGCTCGGCTGGCCGATGGCT +
Preference number: 6 (lower is better)
Translates to: LHHGGEPGPPKN*SWHGELGWPMA
Trigger: AGCCATCGGCCAGCCGAGCTCTCCATGCCAGGACCAGTTCTTCGGCGGGCCCGGCTCCCCACCGTGGTGCAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS CCA 72 bp CACGGTGGGGAGCCGGGCCCGCCGAAGAACTGGTCCTaGCATGGAGAGCTCGGCTGGCCGATGGCTGGCAAT +
Preference number: 6 (lower is better)
Translates to: HGGEPGPPKNWS*HGELGWPMAGN
Trigger: ATTGCCAGCCATCGGCCAGCCGAGCTCTCCATGCCAGGACCAGTTCTTCGGCGGGCCCGGCTCCCCACCGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS CCA 72 bp ATTGGACTGGAAGATGGTCCAGTCATCACCAGGCAGTaGTCCTGGCTCCAGGCGGCTAGGGCGGGTGAGATG +
Preference number: 6 (lower is better)
Translates to: IGLEDGPVITRQ*SWLQAARAGEM
Trigger: CATCTCACCCGCCCTAGCCGCCTGGAGCCAGGACCACTGCCTGGTGATGACTGGACCATCTTCCAGTCCAAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS CCA 72 bp CCGCCGAAGAACTGGTCCTGGCATGGAGAGCTCGGCTaGCCGATGGCTGGCAATAAGCACGGGCTCATAAGT +
Preference number: 6 (lower is better)
Translates to: PPKNWSWHGELG*PMAGNKHGLIS
Trigger: ACTTATGAGCCCGTGCTTATTGCCAGCCATCGGCCAGCCGAGCTCTCCATGCCAGGACCAGTTCTTCGGCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS CAA 72 bp ACCAATCAGCAGCAGTATGAGGCGGTGCAGTTCCAGTaGCCGAGCAGGGCGCACCACCTTCCACAGCTGGAG +
Preference number: 6 (lower is better)
Translates to: TNQQQYEAVQFQ*PSRAHHLPQLE
Trigger: CTCCAGCTGTGGAAGGTGGTGCGCCCTGCTCGGCAACTGGAACTGCACCGCCTCATACTGCTGCTGATTGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS CCA 72 bp TACTACAGTCTCCCAAGGGCAGAGGCAAGGGTTCCTTaGCCTTGGGGCTGGTGGACACGTAGTAAGCCAGGA +
Preference number: 6 (lower is better)
Translates to: YYSLPRAEARVP*PWGWWTRSKPG
Trigger: TCCTGGCTTACTACGTGTCCACCAGCCCCAAGGCCAAGGAACCCTTGCCTCTGCCCTTGGGAGACTGTAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS CAA 90 bp AGTATGCACTTTCCACAAACACAAGGACCACAGGTTCCGTTCGAGTaGTTTCTGGAGGCCTTTGGGGTCGAGGTGGGACTGGTGGCCGTG +
Preference number: 6 (lower is better)
Translates to: SMHFPQTQGPQVPFE*FLEAFGVEVGLVAV
Trigger: CACGGCCACCAGTCCCACCTCGACCCCAAAGGCCTCCAGAAACAACTCGAACGGAACCTGTGGTCCTTGTGTTTGTGGAAAGTGCATACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS CAA 72 bp TTTCCACAAACACAAGGACCACAGGTTCCGTTCGAGTaGTTTCTGGAGGCCTTTGGGGTCGAGGTGGGACTG +
Preference number: 6 (lower is better)
Translates to: FPQTQGPQVPFE*FLEAFGVEVGL
Trigger: CAGTCCCACCTCGACCCCAAAGGCCTCCAGAAACAACTCGAACGGAACCTGTGGTCCTTGTGTTTGTGGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS CAA 90 bp ATCAAACCCAGGAACTTCTGGATGATCTCCATTGAGGCTGCCGGGTaGACACGAAGCTCCTGCCCATCCATAATCAGCAACTGTCCAGAG +
Preference number: 6 (lower is better)
Translates to: IKPRNFWMISIEAAG*TRSSCPSIISNCPE
Trigger: CTCTGGACAGTTGCTGATTATGGATGGGCAGGAGCTTCGTGTCAACCCGGCAGCCTCAATGGAGATCATCCAGAAGTTCCTGGGTTTGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224829.2
CDS CCA 72 bp CCATGCTCCAAAGCAAACTGTTTGTTGAGCCTCATCTaGTCAGCTAGCACAGAGCGGTTGTGGAAGAGGTGT +
Preference number: 6 (lower is better)
Translates to: PCSKANCLLSLI*SASTERLWKRC
Trigger: ACACCTCTTCCACAACCGCTCTGTGCTAGCTGACCAGATGAGGCTCAACAAACAGTTTGCTTTGGAGCATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS CAA 72 bp TCCGTAGGAATCCCATGCTCCAAAGCAAACTGTTTGTaGAGCCTCATCTGGTCAGCTAGCACAGAGCGGTTG +
Preference number: 6 (lower is better)
Translates to: SVGIPCSKANCL*SLIWSASTERL
Trigger: CAACCGCTCTGTGCTAGCTGACCAGATGAGGCTCAACAAACAGTTTGCTTTGGAGCATGGGATTCCTACGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS CAA 72 bp AGATCCGTAGGAATCCCATGCTCCAAAGCAAACTGTTaGTTGAGCCTCATCTGGTCAGCTAGCACAGAGCGG +
Preference number: 6 (lower is better)
Translates to: RSVGIPCSKANC*LSLIWSASTER
Trigger: CCGCTCTGTGCTAGCTGACCAGATGAGGCTCAACAAACAGTTTGCTTTGGAGCATGGGATTCCTACGGATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
CDS TCA 72 bp AAGGTGAAGTTGGGGACTAAGGTCCTGAGTTTGTTCTaGGTGGTCAACAAAGCCTCAACATCAGCCACCTTC +
Preference number: 6 (lower is better)
Translates to: KVKLGTKVLSLF*VVNKASTSATF
Trigger: GAAGGTGGCTGATGTTGAGGCTTTGTTGACCACTCAGAACAAACTCAGGACCTTAGTCCCCAACTTCACCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2
CDS GCA 72 bp CGAAAGCGACTAGATTCCAAGATGGCCACAATCTCCTaGCCCAGTTGTGAGTATGCACTTTCCACAAACACA +
Preference number: 6 (lower is better)
Translates to: RKRLDSKMATIS*PSCEYALSTNT
Trigger: TGTGTTTGTGGAAAGTGCATACTCACAACTGGGGCAGGAGATTGTGGCCATCTTGGAATCTAGTCGCTTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047490.6
ENSMUST00000223679.2
ENSMUST00000225000.2
ENSMUST00000225419.2