RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NDRG4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036564

Ensembl transcript IDs: ENSMUST00000041318.14, ENSMUST00000073139.14, ENSMUST00000080666.8, ENSMUST00000160915.8, ENSMUST00000160964.8, ENSMUST00000162578.8, ENSMUST00000166358.8

Found 331 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTGACCTGGCCCATCCCCTCACTGCTGTCTGAGTGGGCGCAGGGCTaGGGGCGGCTGCCGTCCACGGAACTGGCGCTGGTGAGGGACGCG +
Preference number: 1 (lower is better)
Translates to: LTWPIPSLLSEWAQG*GRLPSTELALVRDA
Trigger: CGCGTCCCTCACCAGCGCCAGTTCCGTGGACGGCAGCCGCCCTCAGCCCTGCGCCCACTCAGACAGCAGTGAGGGGATGGGCCAGGTCAA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR TCA 90 bp CACCTCCATGGTGTGGTTGACCTGGCCCATCCCCTCACTGCTGTCTaGGTGGGCGCAGGGCTGAGGGCGGCTGCCGTCCACGGAACTGGC +
Preference number: 1 (lower is better)
Translates to: HLHGVVDLAHPLTAV*VGAGLRAAAVHGTG
Trigger: GCCAGTTCCGTGGACGGCAGCCGCCCTCAGCCCTGCGCCCACTCAGACAGCAGTGAGGGGATGGGCCAGGTCAACCACACCATGGAGGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR CCA 90 bp CCTCTGCCAACAGGGACAAGAGACCAGGTGACCTTTGCCTCAGGGTaGGACAAGGCCCTGTGGTGGCAGGGTATGGGGGTTCCTGCCCCC +
Preference number: 1 (lower is better)
Translates to: PLPTGTRDQVTFASG*DKALWWQGMGVPAP
Trigger: GGGGGCAGGAACCCCCATACCCTGCCACCACAGGGCCTTGTCCCACCCTGAGGCAAAGGTCACCTGGTCTCTTGTCCCTGTTGGCAGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR GCA 90 bp CTCAGGGTGGGACAAGGCCCTGTGGTGGCAGGGTATGGGGGTTCCTaGCCCCATGTCAGGGTTCTCCATATTCTTCAGCCTGGCTGGCCT +
Preference number: 1 (lower is better)
Translates to: LRVGQGPVVAGYGGS*PHVRVLHILQPGWP
Trigger: AGGCCAGCCAGGCTGAAGAATATGGAGAACCCTGACATGGGGGCAGGAACCCCCATACCCTGCCACCACAGGGCCTTGTCCCACCCTGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR CCA 90 bp TGGGGGTTCCTGCCCCCATGTCAGGGTTCTCCATATTCTTCAGCCTaGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAA +
Preference number: 1 (lower is better)
Translates to: WGFLPPCQGSPYSSA*LALHHLSCPESTRK
Trigger: TTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGAAGAATATGGAGAACCCTGACATGGGGGCAGGAACCCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR TCA 90 bp ATGGCGGGCATAGTTGTGGGCTGTAGGAGGCATGGAACCTTTGTTTaGGGATGGCCCATTTCCCACCCAAGGGCCAGGCAATCTCCAGCC +
Preference number: 1 (lower is better)
Translates to: MAGIVVGCRRHGTFV*GWPISHPRARQSPA
Trigger: GGCTGGAGATTGCCTGGCCCTTGGGTGGGAAATGGGCCATCCTCAAACAAAGGTTCCATGCCTCCTACAGCCCACAACTATGCCCGCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR CCA 90 bp GGTTCCTGCCCCCATGTCAGGGTTCTCCATATTCTTCAGCCTGGCTaGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAATGG +
Preference number: 1 (lower is better)
Translates to: GSCPHVRVLHILQPG*PYTTCPAQRAPGKW
Trigger: CCATTTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGAAGAATATGGAGAACCCTGACATGGGGGCAGGAACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR GCA 90 bp AACATTTTAACCTCTGCCAACAGGGACAAGAGACCAGGTGACCTTTaGCTCAGGGTGGGACAAGGCCCTGTGGTGGCAGGGTATGGGGGT +
Preference number: 1 (lower is better)
Translates to: NILTSANRDKRPGDL*LRVGQGPVVAGYGG
Trigger: ACCCCCATACCCTGCCACCACAGGGCCTTGTCCCACCCTGAGGCAAAGGTCACCTGGTCTCTTGTCCCTGTTGGCAGAGGTTAAAATGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR CCA 90 bp CAAGGTCTCTGCGGCTGTTGTACATGTTCCAGAAGAGCTGCAGGTTaGCCTGGTTCACCACGTTTGAGATCTGCTGCCGGTAGCTCTGCA +
Preference number: 1 (lower is better)
Translates to: QGLCGCCTCSRRAAG*PGSPRLRSAAGSSA
Trigger: TGCAGAGCTACCGGCAGCAGATCTCAAACGTGGTGAACCAGGCCAACCTGCAGCTCTTCTGGAACATGTACAACAGCCGCAGAGACCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR TCA 90 bp CCTCCAACTATCAGCGCCCTGGGGCAGCCAGGCAGCCTAAACAGTTaGGCCTTCCCTGTGATAGGAAACACGACACACGTAGACTTAATT +
Preference number: 1 (lower is better)
Translates to: PPTISALGQPGSLNS*AFPVIGNTTHVDLI
Trigger: AATTAAGTCTACGTGTGTCGTGTTTCCTATCACAGGGAAGGCTCAACTGTTTAGGCTGCCTGGCTGCCCCAGGGCGCTGATAGTTGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073139.14
3UTR CCA 90 bp AGGAAGACCACCAGAATCTGCCATCTTCAGGAAGGTCGTAGTGGTTaGGTCCAGTTTGGAGTTACACTCAACCACCCCTTCCTCAGCAGG +
Preference number: 1 (lower is better)
Translates to: RKTTRICHLQEGRSG*VQFGVTLNHPFLSR
Trigger: CCTGCTGAGGAAGGGGTGGTTGAGTGTAACTCCAAACTGGACCCAACCACTACGACCTTCCTGAAGATGGCAGATTCTGGTGGTCTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR TCA 90 bp TATACACACTTAGTGCTTTCTCTCCTCTCTGGGGATGAGAGCAGATaGAACCAATGGCCAGGCTGTGAGCGCCTACTTGGTGAGATGGCG +
Preference number: 1 (lower is better)
Translates to: YTHLVLSLLSGDESR*NQWPGCERLLGEMA
Trigger: CGCCATCTCACCAAGTAGGCGCTCACAGCCTGGCCATTGGTTTCATCTGCTCTCATCCCCAGAGAGGAGAGAAAGCACTAAGTGTGTATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR GCA 90 bp AGTCAGCTTCCCTGGTTGTGTCACCTGAGGAAGACCACCAGAATCTaGCATCTTCAGGAAGGTCGTAGTGGTTGGGTCCAGTTTGGAGTT +
Preference number: 1 (lower is better)
Translates to: SQLPWLCHLRKTTRI*HLQEGRSGWVQFGV
Trigger: AACTCCAAACTGGACCCAACCACTACGACCTTCCTGAAGATGGCAGATTCTGGTGGTCTTCCTCAGGTGACACAACCAGGGAAGCTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR CCA 90 bp TCTGGGACAAGAGGGACCTACAGTACCTGCCAGCTTCCAAAGGGATaGGTAATCATGAAGTTCTCAGGGGCTACACACAGCATACACAGC +
Preference number: 1 (lower is better)
Translates to: SGTRGTYSTCQLPKG*VIMKFSGATHSIHS
Trigger: GCTGTGTATGCTGTGTGTAGCCCCTGAGAACTTCATGATTACCCATCCCTTTGGAAGCTGGCAGGTACTGTAGGTCCCTCTTGTCCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR CCA 90 bp AGGAAGACCACCAGAATCTGCCATCTTCAGGAAGGTCGTAGTGGTTaGGTCCAGTTTGGAGTTACACTCAACCTGGGAACAAGGAGCCAG +
Preference number: 1 (lower is better)
Translates to: RKTTRICHLQEGRSG*VQFGVTLNLGTRSQ
Trigger: CTGGCTCCTTGTTCCCAGGTTGAGTGTAACTCCAAACTGGACCCAACCACTACGACCTTCCTGAAGATGGCAGATTCTGGTGGTCTTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160915.8
3UTR GCA 90 bp CATCAGAGCTTTAGCTCACTACCCACCATCTTCAAACCTCACATCTaGCAGATCCAGGGGCTGGGCTGGGCTTTCTTCAGTACTGTATCT +
Preference number: 1 (lower is better)
Translates to: HQSFSSLPTIFKPHI*QIQGLGWAFFSTVS
Trigger: AGATACAGTACTGAAGAAAGCCCAGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGCTAAAGCTCTGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR TCA 90 bp ACCACCTCTAAACAGTCACATTCAGTATTCACGGAAGCACGTGAGTaGACTGAACCGGGGATAGGAAACACTCCACTGGACTCCAGAGCA +
Preference number: 1 (lower is better)
Translates to: TTSKQSHSVFTEARE*TEPGIGNTPLDSRA
Trigger: TGCTCTGGAGTCCAGTGGAGTGTTTCCTATCCCCGGTTCAGTTCACTCACGTGCTTCCGTGAATACTGAATGTGACTGTTTAGAGGTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR CCA 90 bp AATGGCTTACAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAATaGATGTGGGTGTCCTCTTGCCTCAGAACACCCATACAATACCAC +
Preference number: 1 (lower is better)
Translates to: NGLQLQKGAACATDK*MWVSSCLRTPIQYH
Trigger: GTGGTATTGTATGGGTGTTCTGAGGCAAGAGGACACCCACATCCATTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTGTAAGCCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR CCA 90 bp TTACAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAATGGATGTaGGTGTCCTCTTGCCTCAGAACACCCATACAATACCACATACAT +
Preference number: 1 (lower is better)
Translates to: LQLQKGAACATDKWM*VSSCLRTPIQYHIH
Trigger: ATGTATGTGGTATTGTATGGGTGTTCTGAGGCAAGAGGACACCCACATCCATTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR TCA 90 bp CTTTGTACAGAGAGGAAAATAATGAACTCCATTAAAAGTTCATCTTaGCCAAAGAGAAGACAACTACCAATGGGAAACCACATACAGGAA +
Preference number: 1 (lower is better)
Translates to: LCTERKIMNSIKSSS*PKRRQLPMGNHIQE
Trigger: TTCCTGTATGTGGTTTCCCATTGGTAGTTGTCTTCTCTTTGGTCAAGATGAACTTTTAATGGAGTTCATTATTTTCCTCTCTGTACAAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp GCAGGGCTGAGGGCGGCTGCCGTCCACGGAACTGGCGCTGGTGAGGGACGCGGTCAGTGTCTGGTAAAGTaGTGGTCAAGCCAGAGAGCT +
Preference number: 2 (lower is better)
Translates to: AGLRAAAVHGTGAGEGRGQCLVK*WSSQRA
Trigger: AGCTCTCTGGCTTGACCAGCACTTTACCAGACACTG...ACCGCGTCCCTCACCAGCGCCAGTTCCGTGGACGGCAGCCGCCCTCAGCCCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp GCAGGGCTGAGGGCGGCTGCCGTCCACGGAACTGGCGCTGGTGAGGGACGCGGTTGTCTGGTAAAGTGCTaGTCAAGCCAGAGAGCTTGG +
Preference number: 2 (lower is better)
Translates to: AGLRAAAVHGTGAGEGRGCLVKC*SSQRAW
Trigger: CCAAGCTCTCTGGCTTGACCAGCACTTTACCAGACA...ACCGCGTCCCTCACCAGCGCCAGTTCCGTGGACGGCAGCCGCCCTCAGCCCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp GGTTGGCCTGGTTCACCACGTTTGAGATCTGCTGCCGGTAGCTCTGCACCAGCTCCCCTGAGGGAACTGTaGCGCTCCCACCTGCTGCCC +
Preference number: 2 (lower is better)
Translates to: GWPGSPRLRSAAGSSAPAPLREL*RSHLLP
Trigger: GGGCAGCAGGTGGGAGCGTCACAGTTCCCTCAGGGG...AGCTGGTGCAGAGCTACCGGCAGCAGATCTCAAACGTGGTGAACCAGGCCAACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp CCCTGTGGTGGCAGGGTATGGGGGTTCCTGCCCCCATGTCAGGGTTCTCCATATGGGGAGGGGCCACACTaGGTGAGACAGGAGTGTGTA +
Preference number: 2 (lower is better)
Translates to: PCGGRVWGFLPPCQGSPYGEGPH*VRQECV
Trigger: TACACACTCCTGTCTCACTCAGTGTGGCCCCTCCCC...ATATGGAGAACCCTGACATGGGGGCAGGAACCCCCATACCCTGCCACCACAGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp TCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAATGGGGAAGATGAGCCGGTaGAGAGATGGCAGTGGGACC +
Preference number: 2 (lower is better)
Translates to: SAWLALHHLSCPESTRKMGKMSR*RDGSGT
Trigger: GGTCCCACTGCCATCTCTGCACCGGCTCATCTTCCC...CATTTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp GGCCCTGTGGTGGCAGGGTATGGGGGTTCCTGCCCCCATGTCAGGGTTCTCCATATCCAGGGGCTGGGCTaGGCTTTCTTCAGTACTGTA +
Preference number: 2 (lower is better)
Translates to: GPVVAGYGGSCPHVRVLHIQGLG*AFFSTV
Trigger: TACAGTACTGAAGAAAGCCCAGCCCAGCCCCTGGAT...ATGGAGAACCCTGACATGGGGGCAGGAACCCCCATACCCTGCCACCACAGGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp CCACGTTTGAGATCTGCTGCCGGTAGCTCTGCACCAGCTCCGTGTTGTTCACCAGGCAGCGGAGTGTCTTaGCATTGGGCACCGTCCCAG +
Preference number: 2 (lower is better)
Translates to: PRLRSAAGSSAPAPCCSPGSGVS*HWAPSQ
Trigger: CTGGGACGGTGCCCAATGCCAAGACACTCCGCTGCC...TGGTGAACAACACGGAGCTGGTGCAGAGCTACCGGCAGCAGATCTCAAACGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp GCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGGGCTGGGGAGGGGCCACACTaGGTGAGACAGGAGTGTGTA +
Preference number: 2 (lower is better)
Translates to: AHYPPSSNLTSARSRGWAGEGPH*VRQECV
Trigger: TACACACTCCTGTCTCACTCAGTGTGGCCCCTCCCC...AGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp GCCCCCATGTCAGGGTTCTCCATATTCTTCAGCCTGGCTGGCCTTACACCACCTGGACAAGAGACCAGGTaGCCTTTGCCTCAGGGTGGG +
Preference number: 2 (lower is better)
Translates to: APMSGFSIFFSLAGLTPPGQETR*PLPQGG
Trigger: CCCACCCTGAGGCAAAGGTCACCTGGTCTCTTGTCC...AGGTGGTGTAAGGCCAGCCAGGCTGAAGAATATGGAGAACCCTGACATGGGGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp GGTCCAAGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACGTGCAGAGATGGCAGTaGGACCTGGGGGCAGGTAAG +
Preference number: 2 (lower is better)
Translates to: GPRLPTGLTPTHIRALAHVQRWQ*DLGAGK
Trigger: CTTACCTGCCCCCAGGTCCCACTGCCATCTCTGCAC...GTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCTTGGACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp GGTAAAGTGCTGGTCAAGCCAGAGAGCTTGGTGGCAGCCCAGTCAATCCAGCCTGTGCAGAGATGGCAGTaGGACCTGGGGGCAGGTAAG +
Preference number: 2 (lower is better)
Translates to: GKVLVKPESLVAAQSIQPVQRWQ*DLGAGK
Trigger: CTTACCTGCCCCCAGGTCCCACTGCCATCTCTGCAC...AGGCTGGATTGACTGGGCTGCCACCAAGCTCTCTGGCTTGACCAGCACTTTACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp TCTTCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAGCCAGATCCAGGGGCTaGGCTGGGCTTTCTTCAGTA +
Preference number: 2 (lower is better)
Translates to: SSAWLALHHLSCPESTRKARSRG*AGLSSV
Trigger: TACTGAAGAAAGCCCAGCCCAGCCCCTGGATCTGGC...TTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp TCTCTGGGGATGAGAGCAGATGAAACCAATGGCCAGGCTGTGAGCGCCTACTTGGGACAAGAGACCAGGTaGCCTTTGCCTCAGGGTGGG +
Preference number: 2 (lower is better)
Translates to: SLGMRADETNGQAVSAYLGQETR*PLPQGG
Trigger: CCCACCCTGAGGCAAAGGTCACCTGGTCTCTTGTCC...CAAGTAGGCGCTCACAGCCTGGCCATTGGTTTCATCTGCTCTCATCCCCAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp GCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGGGCTCCAGCTCCTCCTGGCTaGAGAGATGGGAGAGTACAG +
Preference number: 2 (lower is better)
Translates to: AHYPPSSNLTSARSRGWAPAPPG*RDGRVQ
Trigger: CTGTACTCTCCCATCTCTTCAGCCAGGAGGAGCTGG...AGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp GGAGTGTGTAAGGCGAGCCCCTCACACCATCTAAGACTGTTGTGCTGTGCTGTCGGGAAGATGAGCCGGTaGAGAGATGGCAGTGGGACC +
Preference number: 2 (lower is better)
Translates to: GVCKASPSHHLRLLCCAVGKMSR*RDGSGT
Trigger: GGTCCCACTGCCATCTCTGCACCGGCTCATCTTCCC...GACAGCACAGCACAACAGTCTTAGATGGTGTGAGGGGCTCGCCTTACACACTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp CCCAAGGGCCAGGCAATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTGCCAGATCCAGGGGCTaGGCTGGGCTTTCTTCAGTA +
Preference number: 2 (lower is better)
Translates to: PKGQAISSPSSKQRSLYLARSRG*AGLSSV
Trigger: TACTGAAGAAAGCCCAGCCCAGCCCCTGGATCTGGC...AAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGATTGCCTGGCCCTTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp GGCCCTGTGGTGGCAGGGTATGGGGGTTCCTGCCCCCATGTCAGGGTTCTCCATTCCAGCCTTTGCCGTTaGGGTCAATGTTCATCAACA +
Preference number: 2 (lower is better)
Translates to: GPVVAGYGGSCPHVRVLHSSLCR*GQCSST
Trigger: TGTTGATGAACATTGACCCCAACGGCAAAGGCTGGA...ATGGAGAACCCTGACATGGGGGCAGGAACCCCCATACCCTGCCACCACAGGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp CTTCCTCAGCAGGTGCATTATCTCCGACTACCAGCATCACTGGGCAGCGGAGTGAGCCAGAGAGCTTGGTaGCAGCCCAGTCAATCCAGC +
Preference number: 2 (lower is better)
Translates to: LPQQVHYLRLPASLGSGVSQRAW*QPSQSS
Trigger: GCTGGATTGACTGGGCTGCCACCAAGCTCTCTGGCT...CACTCCGCTGCCCAGTGATGCTGGTAGTCGGAGATAATGCACCTGCTGAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp AGTGTCTTGGCATTGGGCACCGTCCCAGGTCGGTTAATATCAAGGTCTCTGCGGCCAGCTCCTCCTGGCTaGAGAGATGGGAGAGTACAG +
Preference number: 2 (lower is better)
Translates to: SVLALGTVPGRLISRSLRPAPPG*RDGRVQ
Trigger: CTGTACTCTCCCATCTCTTCAGCCAGGAGGAGCTGG...CCGCAGAGACCTTGATATTAACCGACCTGGGACGGTGCCCAATGCCAAGACACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp CCACGTTTGAGATCTGCTGCCGGTAGCTCTGCACCAGCTCCGTGTTGTTCACCACTGGTTCACCACGTTTaGGATCTGCTGCCGGTAGCT +
Preference number: 2 (lower is better)
Translates to: PRLRSAAGSSAPAPCCSPLVHHV*DLLPVA
Trigger: AGCTACCGGCAGCAGATCTCAAACGTGGTGAACCAG...TGGTGAACAACACGGAGCTGGTGCAGAGCTACCGGCAGCAGATCTCAAACGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp ATGGCTGTCTGTCTAGAGCGCCCTCTTGTGGCTACCATCCTCATGACTGTCACTGGGAAGATGAGCCGGTaGAGAGATGGCAGTGGGACC +
Preference number: 2 (lower is better)
Translates to: MAVCLERPLVATILMTVTGKMSR*RDGSGT
Trigger: GGTCCCACTGCCATCTCTGCACCGGCTCATCTTCCC...AGTGACAGTCATGAGGATGGTAGCCACAAGAGGGCGCTCTAGACAGACAGCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp TCCAAAGGGATGGGTAATCATGAAGTTCTCAGGGGCTACACACAGCATACACAGGACGCTCCCACCTGCTaGCCAGGGGCATCCACGTGG +
Preference number: 2 (lower is better)
Translates to: SKGMGNHEVLRGYTQHTQDAPTC*PGASTW
Trigger: CCACGTGGATGCCCCTGGGCAGCAGGTGGGAGCGTC...CTGTGTATGCTGTGTGTAGCCCCTGAGAACTTCATGATTACCCATCCCTTTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp AATGGCTGTCTGTCTAGAGCGCCCTCTTGTGGCTACCATCCTCATGACTGTCACGTGCAGAGATGGCAGTaGGACCTGGGGGCAGGTAAG +
Preference number: 2 (lower is better)
Translates to: NGCLSRAPSCGYHPHDCHVQRWQ*DLGAGK
Trigger: CTTACCTGCCCCCAGGTCCCACTGCCATCTCTGCAC...GTGACAGTCATGAGGATGGTAGCCACAAGAGGGCGCTCTAGACAGACAGCCATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp ATGGCTGTCTGTCTAGAGCGCCCTCTTGTGGCTACCATCCTCATGACTGTCACTGTGCAGAGATGGCAGTaGGACCTGGGGGCAGGTAAG +
Preference number: 2 (lower is better)
Translates to: MAVCLERPLVATILMTVTVQRWQ*DLGAGK
Trigger: CTTACCTGCCCCCAGGTCCCACTGCCATCTCTGCAC...AGTGACAGTCATGAGGATGGTAGCCACAAGAGGGCGCTCTAGACAGACAGCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp TCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAATGATCCAGGGGCTGGGCTaGGCTTTCTTCAGTACTGTA +
Preference number: 2 (lower is better)
Translates to: SAWLALHHLSCPESTRKMIQGLG*AFFSTV
Trigger: TACAGTACTGAAGAAAGCCCAGCCCAGCCCCTGGAT...CATTTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp TCTCTGGGGATGAGAGCAGATGAAACCAATGGCCAGGCTGTGAGCGCCTACTTGGCCAGATCCAGGGGCTaGGCTGGGCTTTCTTCAGTA +
Preference number: 2 (lower is better)
Translates to: SLGMRADETNGQAVSAYLARSRG*AGLSSV
Trigger: TACTGAAGAAAGCCCAGCCCAGCCCCTGGATCTGGC...CAAGTAGGCGCTCACAGCCTGGCCATTGGTTTCATCTGCTCTCATCCCCAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp TCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAATGAGAAGAGCTGCAGGTTaGCCTGGTTCACCACGTTTG +
Preference number: 2 (lower is better)
Translates to: SAWLALHHLSCPESTRKMRRAAG*PGSPRL
Trigger: CAAACGTGGTGAACCAGGCCAACCTGCAGCTCTTCT...CATTTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp GTACAGTGTCTGGTAAAGTGCTGGTCAAGCCAGAGAGCTTGGTGGCAGCCCAGTGACTACCAGCATCACTaGGCAGCGGAGTGTCTTGGC +
Preference number: 2 (lower is better)
Translates to: VQCLVKCWSSQRAWWQPSDYQHH*AAECLG
Trigger: GCCAAGACACTCCGCTGCCCAGTGATGCTGGTAGTC...ACTGGGCTGCCACCAAGCTCTCTGGCTTGACCAGCACTTTACCAGACACTGTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp TCTTCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAAAACTAAAGGGAAGATaGGCCGGTGCAGAGATGGCA +
Preference number: 2 (lower is better)
Translates to: SSAWLALHHLSCPESTRKKLKGR*AGAEMA
Trigger: TGCCATCTCTGCACCGGCTCATCTTCCCTTTAGTTT...TTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGAAGA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp ATTCTTCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAACTAAAGGGAAGATaGGCCGGTGCAGAGATGGCA +
Preference number: 2 (lower is better)
Translates to: ILQPGWPYTTCPAQRAPGKLKGR*AGAEMA
Trigger: TGCCATCTCTGCACCGGCTCATCTTCCCTTTAGTTT...TCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGAAGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp AGTATTCAAGACCAGCCTGGGCTACAGAAAGATTGCTCAACCCTCCCCCAACCAGGACAAGAGACCAGGTaGCCTTTGCCTCAGGGTGGG +
Preference number: 2 (lower is better)
Translates to: SIQDQPGLQKDCSTLPQPGQETR*PLPQGG
Trigger: CCCACCCTGAGGCAAAGGTCACCTGGTCTCTTGTCC...TGGTTGGGGGAGGGTTGAGCAATCTTTCTGTAGCCCAGGCTGGTCTTGAATACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000073139.14
3UTR-3UTR TCA 90 bp TTGATGCAAGGGTTACAGGAAAGGGACACTCTTAAGGTCCAAGGCTGCCCACTGCCACATCATGGTAGGTaGGGATGGCTGGGCGGTTCC +
Preference number: 2 (lower is better)
Translates to: LMQGLQERDTLKVQGCPLPHHGR*GWLGGS
Trigger: GGAACCGCCCAGCCATCCTCACCTACCATGATGTGG...CAGTGGGCAGCCTTGGACCTTAAGAGTGTCCCTTTCCTGTAACCCTTGCATCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp TTTAGCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGGGGAAGATGAGCCGGTaGAGAGATGGCAGTGGGACC +
Preference number: 2 (lower is better)
Translates to: FSSLPTIFKPHICQIQGLGKMSR*RDGSGT
Trigger: GGTCCCACTGCCATCTCTGCACCGGCTCATCTTCCC...CAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGCTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp GGTTACAGGAAAGGGACACTCTTAAGGTCCAAGGCTGCCCACTGGTCTGACTCCGGGACCTACAGTACCTaGCAGCTTCCAAAGGGATGG +
Preference number: 2 (lower is better)
Translates to: GYRKGTLLRSKAAHWSDSGTYST*QLPKGW
Trigger: CCATCCCTTTGGAAGCTGGCAGGTACTGTAGGTCCC...GGAGTCAGACCAGTGGGCAGCCTTGGACCTTAAGAGTGTCCCTTTCCTGTAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp ACTGGACTCCAGAGCAGTCTAGAAATGGCTTACAGTTACAGAAAGGGGCGGCATAGCATGGCGGCCAGCTaGTCCATGGAGGGGAACTGG +
Preference number: 2 (lower is better)
Translates to: TGLQSSLEMAYSYRKGRHSMAAS*SMEGNW
Trigger: CCAGTTCCCCTCCATGGAGCAGCTGGCCGCCATGCT...ATGCCGCCCCTTTCTGTAACTGTAAGCCATTTCTAGACTGCTCTGGAGTCCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp CAGCGCCCTGGGGCAGCCAGGCAGCCTAAACAGTTGAGCCTTCCCTGTGATAGGTGTGCTGTCCCAAGGTaGATCCCCTCATTTCTTTTT +
Preference number: 2 (lower is better)
Translates to: QRPGAARQPKQLSLPCDRCAVPR*IPSFLF
Trigger: AAAAAGAAATGAGGGGATCCACCTTGGGACAGCACA...CCTATCACAGGGAAGGCTCAACTGTTTAGGCTGCCTGGCTGCCCCAGGGCGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073139.14
3UTR-3UTR CCA 90 bp CTTCCTCAGCAGGTGCATTATCTCCGACTACCAGCATCACTGGGCAGCGGAGTGATCCAGGGGCTGGGCTaGGCTTTCTTCAGTACTGTA +
Preference number: 2 (lower is better)
Translates to: LPQQVHYLRLPASLGSGVIQGLG*AFFSTV
Trigger: TACAGTACTGAAGAAAGCCCAGCCCAGCCCCTGGAT...CACTCCGCTGCCCAGTGATGCTGGTAGTCGGAGATAATGCACCTGCTGAGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp CCCAAGGGCCAGGCAATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTTTGTCTGTGACACACTaGCCCAAGTTGACCAGGGCA +
Preference number: 2 (lower is better)
Translates to: PKGQAISSPSSKQRSLYLLSVTH*PKLTRA
Trigger: TGCCCTGGTCAACTTGGGCCAGTGTGTCACAGACAA...AAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGATTGCCTGGCCCTTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp GTGTTGTTCACCAGCTCCTCCTGGCTGAAGAGATGGGAGAGTACAGTGTCTGGTAGCCAGAGAGCTTGGTaGCAGCCCAGTCAATCCAGC +
Preference number: 2 (lower is better)
Translates to: VLFTSSSWLKRWESTVSGSQRAW*QPSQSS
Trigger: GCTGGATTGACTGGGCTGCCACCAAGCTCTCTGGCT...ACCAGACACTGTACTCTCCCATCTCTTCAGCCAGGAGGAGCTGGTGAACAACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp CCCAAGGGCCAGGCAATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTAGCTGCAGGTTGGCCTaGTTCACCACGTTTGAGATC +
Preference number: 2 (lower is better)
Translates to: PKGQAISSPSSKQRSLYLSCRLA*FTTFEI
Trigger: GATCTCAAACGTGGTGAACCAGGCCAACCTGCAGCT...AAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGATTGCCTGGCCCTTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp TCACCACGTTTGAGATCTGCTGCCGGTAGCTCTGCACCAGCTCCGTGTTGTTCACCAGGGGCATCCACGTaGCACACCACAAAGTGTTTG +
Preference number: 2 (lower is better)
Translates to: SPRLRSAAGSSAPAPCCSPGAST*HTTKCL
Trigger: CAAACACTTTGTGGTGTGCCACGTGGATGCCCCTGG...TGAACAACACGGAGCTGGTGCAGAGCTACCGGCAGCAGATCTCAAACGTGGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR CAA 90 bp CCAGAATCTGCCATCTTCAGGAAGGTCGTAGTGGTTGGGTCCAGTTaGGAGTTACACTCAACCTGGGAACAAGGAGCCAGCACCCCTTCC +
Preference number: 2 (lower is better)
Translates to: PESAIFRKVVVVGSS*ELHSTWEQGASTPS
Trigger: GGAAGGGGTGCTGGCTCCTTGTTCCCAGGTTGAGTGTAACTCCAAACTGGACCCAACCACTACGACCTTCCTGAAGATGGCAGATTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160915.8
3UTR-3UTR TCA 90 bp GCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGGGCTAAACTAAAGGGAAGATaGGCCGGTGCAGAGATGGCA +
Preference number: 2 (lower is better)
Translates to: AHYPPSSNLTSARSRGWAKLKGR*AGAEMA
Trigger: TGCCATCTCTGCACCGGCTCATCTTCCCTTTAGTTT...AGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp GAGACAGGAGTGTGTAAGGCGAGCCCCTCACACCATCTAAGACTGTTGTGCTGTCACACTGGCCCAAGTTaGCCAGGGCACTGTGACAAA +
Preference number: 2 (lower is better)
Translates to: ETGVCKASPSHHLRLLCCHTGPS*PGHCDK
Trigger: TTTGTCACAGTGCCCTGGTCAACTTGGGCCAGTGTG...ACAGCACAACAGTCTTAGATGGTGTGAGGGGCTCGCCTTACACACTCCTGTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp TGGAACCTTTGTTTGAGGATGGCCCATTTCCCACCCAAGGGCCAGGCAATCTCCCCTGGTTGTGTCACCTaGGGAAGACCACCAGAATCT +
Preference number: 2 (lower is better)
Translates to: WNLCLRMAHFPPKGQAISPGCVT*GRPPES
Trigger: AGATTCTGGTGGTCTTCCTCAGGTGACACAACCAGG...GGAGATTGCCTGGCCCTTGGGTGGGAAATGGGCCATCCTCAAACAAAGGTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp CCACGTTTGAGATCTGCTGCCGGTAGCTCTGCACCAGCTCCGTGTTGTTCACCAAGCACAGCTTGTGATTaGGACCCACATCATGGTAGG +
Preference number: 2 (lower is better)
Translates to: PRLRSAAGSSAPAPCCSPSTACD*DPHHGR
Trigger: CCTACCATGATGTGGGTCTCAATCACAAGCTGTGCT...TGGTGAACAACACGGAGCTGGTGCAGAGCTACCGGCAGCAGATCTCAAACGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp GGTTACAGGAAAGGGACACTCTTAAGGTCCAAGGCTGCCCACTGGTCTGACTCCTTACACCACCTGTCCTaGCCAGAGAGCACCAGGAAA +
Preference number: 2 (lower is better)
Translates to: GYRKGTLLRSKAAHWSDSLHHLS*PESTRK
Trigger: TTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAA...GGAGTCAGACCAGTGGGCAGCCTTGGACCTTAAGAGTGTCCCTTTCCTGTAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp ATGAGAGCAGATGAAACCAATGGCCAGGCTGTGAGCGCCTACTTGGTGAGATGGGGGACCTACAGTACCTaGCAGCTTCCAAAGGGATGG +
Preference number: 2 (lower is better)
Translates to: MRADETNGQAVSAYLVRWGTYST*QLPKGW
Trigger: CCATCCCTTTGGAAGCTGGCAGGTACTGTAGGTCCC...CCATCTCACCAAGTAGGCGCTCACAGCCTGGCCATTGGTTTCATCTGCTCTCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp AGTACAGTGTCTGGTAAAGTGCTGGTCAAGCCAGAGAGCTTGGTGGCAGCCCAGATGTTCCAGAAGAGCTaGAGGTTGGCCTGGTTCACC +
Preference number: 2 (lower is better)
Translates to: STVSGKVLVKPESLVAAQMFQKS*RLAWFT
Trigger: GGTGAACCAGGCCAACCTGCAGCTCTTCTGGAACAT...CTGGGCTGCCACCAAGCTCTCTGGCTTGACCAGCACTTTACCAGACACTGTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp ATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTCCCATCTGTGTCTTTGTGCAGAGATGGCAGTaGGACCTGGGGGCAGGTAAG +
Preference number: 2 (lower is better)
Translates to: ISSPSSKQRSLYLPICVFVQRWQ*DLGAGK
Trigger: CTTACCTGCCCCCAGGTCCCACTGCCATCTCTGCAC...AAAGACACAGATGGGAAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp TCTCTGGGGATGAGAGCAGATGAAACCAATGGCCAGGCTGTGAGCGCCTACTTGATCCAGGGGCTGGGCTaGGCTTTCTTCAGTACTGTA +
Preference number: 2 (lower is better)
Translates to: SLGMRADETNGQAVSAYLIQGLG*AFFSTV
Trigger: TACAGTACTGAAGAAAGCCCAGCCCAGCCCCTGGAT...CAAGTAGGCGCTCACAGCCTGGCCATTGGTTTCATCTGCTCTCATCCCCAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp CCACGTTTGAGATCTGCTGCCGGTAGCTCTGCACCAGCTCCGTGTTGTTCACCATGTCTGGTAAAGTGCTaGTCAAGCCAGAGAGCTTGG +
Preference number: 2 (lower is better)
Translates to: PRLRSAAGSSAPAPCCSPCLVKC*SSQRAW
Trigger: CCAAGCTCTCTGGCTTGACCAGCACTTTACCAGACA...TGGTGAACAACACGGAGCTGGTGCAGAGCTACCGGCAGCAGATCTCAAACGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp TGGAACCTTTGTTTGAGGATGGCCCATTTCCCACCCAAGGGCCAGGCAATCTCCCTCAGTCAGCTTCCCTaGTTGTGTCACCTGAGGAAG +
Preference number: 2 (lower is better)
Translates to: WNLCLRMAHFPPKGQAISLSQLP*LCHLRK
Trigger: CTTCCTCAGGTGACACAACCAGGGAAGCTGACTGAG...GGAGATTGCCTGGCCCTTGGGTGGGAAATGGGCCATCCTCAAACAAAGGTTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp TCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAATGTTGACCAGGGCACTGTaGCAAATACTTGGTGAAATC +
Preference number: 2 (lower is better)
Translates to: SAWLALHHLSCPESTRKMLTRAL*QILGEI
Trigger: GATTTCACCAAGTATTTGTCACAGTGCCCTGGTCAA...CATTTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp AGTATTCAAGACCAGCCTGGGCTACAGAAAGATTGCTCAACCCTCCCCCAACCACACACTGGCCCAAGTTaGCCAGGGCACTGTGACAAA +
Preference number: 2 (lower is better)
Translates to: SIQDQPGLQKDCSTLPQPHTGPS*PGHCDK
Trigger: TTTGTCACAGTGCCCTGGTCAACTTGGGCCAGTGTG...TGGTTGGGGGAGGGTTGAGCAATCTTTCTGTAGCCCAGGCTGGTCTTGAATACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000073139.14
3UTR-3UTR TCA 90 bp AGCTTTAGCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGGGGGATGAGAGCAGATaGAACCAATGGCCAGGCTGT +
Preference number: 2 (lower is better)
Translates to: SFSSLPTIFKPHICQIQGGDESR*NQWPGC
Trigger: ACAGCCTGGCCATTGGTTTCATCTGCTCTCATCCCC...CCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGCTAAAGCT
53% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp TCTTCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAATGTGCTGTCCCAAGGTaGATCCCCTCATTTCTTTTT +
Preference number: 2 (lower is better)
Translates to: SSAWLALHHLSCPESTRKCAVPR*IPSFLF
Trigger: AAAAAGAAATGAGGGGATCCACCTTGGGACAGCACA...TTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp ATGAGAGCAGATGAAACCAATGGCCAGGCTGTGAGCGCCTACTTGGTGAGATGGATTCTTCAGCCTGGCTaGCCTTACACCACCTGTCCT +
Preference number: 2 (lower is better)
Translates to: MRADETNGQAVSAYLVRWILQPG*PYTTCP
Trigger: AGGACAGGTGGTGTAAGGCCAGCCAGGCTGAAGAAT...CCATCTCACCAAGTAGGCGCTCACAGCCTGGCCATTGGTTTCATCTGCTCTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp GTTTGGAGTTACACTCAACCTGGGAACAAGGAGCCAGCACCCCTTCCTCAGCAGTCCTGGCTGAAGAGATaGGAGAGTACAGTGTCTGGT +
Preference number: 2 (lower is better)
Translates to: VWSYTQPGNKEPAPLPQQSWLKR*ESTVSG
Trigger: ACCAGACACTGTACTCTCCCATCTCTTCAGCCAGGA...CTGCTGAGGAAGGGGTGCTGGCTCCTTGTTCCCAGGTTGAGTGTAACTCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160915.8
3UTR-3UTR CCA 90 bp CAGTCTAGAAATGGCTTACAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAACGGCCAGCTGCTCCATaGAGGGGAACTGGTACCCCT +
Preference number: 2 (lower is better)
Translates to: QSRNGLQLQKGAACATDKRPAAP*RGTGTP
Trigger: AGGGGTACCAGTTCCCCTCCATGGAGCAGCTGGCCG...TTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTGTAAGCCATTTCTAGACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp ATTCTTCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGATGGCTACCATCCTCATaGCTGTCACTTCTACTATTA +
Preference number: 2 (lower is better)
Translates to: ILQPGWPYTTCPAQRAPGWLPSS*LSLLLL
Trigger: TAATAGTAGAAGTGACAGTCATGAGGATGGTAGCCA...TCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGAAGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp ACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGGGCTGGGCTTTTGTGCTGTCCCAAGGTaGATCCCCTCATTTCTTTTT +
Preference number: 2 (lower is better)
Translates to: THHLQTSHLPDPGAGLGFCAVPR*IPSFLF
Trigger: AAAAAGAAATGAGGGGATCCACCTTGGGACAGCACA...AAAGCCCAGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp CTTCCTCAGCAGGTGCATTATCTCCGACTACCAGCATCACTGGGCAGCGGAGTGTGTGCTGTCCCAAGGTaGATCCCCTCATTTCTTTTT +
Preference number: 2 (lower is better)
Translates to: LPQQVHYLRLPASLGSGVCAVPR*IPSFLF
Trigger: AAAAAGAAATGAGGGGATCCACCTTGGGACAGCACA...CACTCCGCTGCCCAGTGATGCTGGTAGTCGGAGATAATGCACCTGCTGAGGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp AGCTTTAGCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGTTGTCTGTGACACACTaGCCCAAGTTGACCAGGGCA +
Preference number: 2 (lower is better)
Translates to: SFSSLPTIFKPHICQIQGLSVTH*PKLTRA
Trigger: TGCCCTGGTCAACTTGGGCCAGTGTGTCACAGACAA...CCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGCTAAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp TGGTTGTGTCACCTGAGGAAGACCACCAGAATCTGCCATCTTCAGGAAGGTCGTTTCACCAGCTCCTCCTaGCTGAAGAGATGGGAGAGT +
Preference number: 2 (lower is better)
Translates to: WLCHLRKTTRICHLQEGRFTSSS*LKRWES
Trigger: ACTCTCCCATCTCTTCAGCCAGGAGGAGCTGGTGAA...ACGACCTTCCTGAAGATGGCAGATTCTGGTGGTCTTCCTCAGGTGACACAACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp AGCTTTAGCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGAAACTAAAGGGAAGATaGGCCGGTGCAGAGATGGCA +
Preference number: 2 (lower is better)
Translates to: SFSSLPTIFKPHICQIQGKLKGR*AGAEMA
Trigger: TGCCATCTCTGCACCGGCTCATCTTCCCTTTAGTTT...CCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGCTAAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp TTGATGCAAGGGTTACAGGAAAGGGACACTCTTAAGGTCCAAGGCTGCCCACTGAAACTAAAGGGAAGATaGGCCGGTGCAGAGATGGCA +
Preference number: 2 (lower is better)
Translates to: LMQGLQERDTLKVQGCPLKLKGR*AGAEMA
Trigger: TGCCATCTCTGCACCGGCTCATCTTCCCTTTAGTTT...CAGTGGGCAGCCTTGGACCTTAAGAGTGTCCCTTTCCTGTAACCCTTGCATCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp TGGAACCTTTGTTTGAGGATGGCCCATTTCCCACCCAAGGGCCAGGCAATCTCCTTGACCAGGGCACTGTaGCAAATACTTGGTGAAATC +
Preference number: 2 (lower is better)
Translates to: WNLCLRMAHFPPKGQAISLTRAL*QILGEI
Trigger: GATTTCACCAAGTATTTGTCACAGTGCCCTGGTCAA...GGAGATTGCCTGGCCCTTGGGTGGGAAATGGGCCATCCTCAAACAAAGGTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp GGGATTAGTTCTACCACCTCTAAACAGTCACATTCAGTATTCACGGAAGCACGTGGGAAGATGAGCCGGTaGAGAGATGGCAGTGGGACC +
Preference number: 2 (lower is better)
Translates to: GISSTTSKQSHSVFTEARGKMSR*RDGSGT
Trigger: GGTCCCACTGCCATCTCTGCACCGGCTCATCTTCCC...ACGTGCTTCCGTGAATACTGAATGTGACTGTTTAGAGGTGGTAGAACTAATCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp GAGACAGGAGTGTGTAAGGCGAGCCCCTCACACCATCTAAGACTGTTGTGCTGTATGTGGGTGTCCTCTTaGCTCAGAACACCCATACAA +
Preference number: 2 (lower is better)
Translates to: ETGVCKASPSHHLRLLCCMWVSS*LRTPIQ
Trigger: TTGTATGGGTGTTCTGAGGCAAGAGGACACCCACAT...ACAGCACAACAGTCTTAGATGGTGTGAGGGGCTCGCCTTACACACTCCTGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp GAATCTGCCATCTTCAGGAAGGTCGTAGTGGTTGGGTCCAGTTTGGAGTTACACTTCACCAGCTCCTCCTaGCTGAAGAGATGGGAGAGT +
Preference number: 2 (lower is better)
Translates to: ESAIFRKVVVVGSSLELHFTSSS*LKRWES
Trigger: ACTCTCCCATCTCTTCAGCCAGGAGGAGCTGGTGAA...GTGTAACTCCAAACTGGACCCAACCACTACGACCTTCCTGAAGATGGCAGATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp GGGATTAGTTCTACCACCTCTAAACAGTCACATTCAGTATTCACGGAAGCACGTGGAGTGTCTTGGCATTaGGCACCGTCCCAGGTCGGT +
Preference number: 2 (lower is better)
Translates to: GISSTTSKQSHSVFTEARGVSWH*APSQVG
Trigger: ACCGACCTGGGACGGTGCCCAATGCCAAGACACTCC...ACGTGCTTCCGTGAATACTGAATGTGACTGTTTAGAGGTGGTAGAACTAATCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp AAGAGAAGACAACTACCAATGGGAAACCACATACAGGAAGGAGGACCTGATATAGGGGAGGGGCCACACTaGGTGAGACAGGAGTGTGTA +
Preference number: 2 (lower is better)
Translates to: KRRQLPMGNHIQEGGPDIGEGPH*VRQECV
Trigger: TACACACTCCTGTCTCACTCAGTGTGGCCCCTCCCC...TATATCAGGTCCTCCTTCCTGTATGTGGTTTCCCATTGGTAGTTGTCTTCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp TCTCTGGGGATGAGAGCAGATGAAACCAATGGCCAGGCTGTGAGCGCCTACTTGTGGCTACCATCCTCATaGCTGTCACTTCTACTATTA +
Preference number: 2 (lower is better)
Translates to: SLGMRADETNGQAVSAYLWLPSS*LSLLLL
Trigger: TAATAGTAGAAGTGACAGTCATGAGGATGGTAGCCA...CAAGTAGGCGCTCACAGCCTGGCCATTGGTTTCATCTGCTCTCATCCCCAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp CAGTCTAGAAATGGCTTACAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAAGGGGATGAGAGCAGATaGAACCAATGGCCAGGCTGT +
Preference number: 2 (lower is better)
Translates to: QSRNGLQLQKGAACATDKGDESR*NQWPGC
Trigger: ACAGCCTGGCCATTGGTTTCATCTGCTCTCATCCCC...TTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTGTAAGCCATTTCTAGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp GAATCTGCCATCTTCAGGAAGGTCGTAGTGGTTGGGTCCAGTTTGGAGTTACACCAGTGTCTGGTAAAGTaGTGGTCAAGCCAGAGAGCT +
Preference number: 2 (lower is better)
Translates to: ESAIFRKVVVVGSSLELHQCLVK*WSSQRA
Trigger: AGCTCTCTGGCTTGACCAGCACTTTACCAGACACTG...GTGTAACTCCAAACTGGACCCAACCACTACGACCTTCCTGAAGATGGCAGATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp ATGGCTGTCTGTCTAGAGCGCCCTCTTGTGGCTACCATCCTCATGACTGTCACTTGTGCTGTCCCAAGGTaGATCCCCTCATTTCTTTTT +
Preference number: 2 (lower is better)
Translates to: MAVCLERPLVATILMTVTCAVPR*IPSFLF
Trigger: AAAAAGAAATGAGGGGATCCACCTTGGGACAGCACA...AGTGACAGTCATGAGGATGGTAGCCACAAGAGGGCGCTCTAGACAGACAGCCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp AAGAGAAGACAACTACCAATGGGAAACCACATACAGGAAGGAGGACCTGATATAGACAAGGCCCTGTGGTaGCAGGGTATGGGGGTTCCT +
Preference number: 2 (lower is better)
Translates to: KRRQLPMGNHIQEGGPDIDKALW*QGMGVP
Trigger: AGGAACCCCCATACCCTGCCACCACAGGGCCTTGTC...TATATCAGGTCCTCCTTCCTGTATGTGGTTTCCCATTGGTAGTTGTCTTCTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp AGCTTTAGCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGTGTGCCACAGATAAATaGATGTGGGTGTCCTCTTGC +
Preference number: 2 (lower is better)
Translates to: SFSSLPTIFKPHICQIQGCATDK*MWVSSC
Trigger: GCAAGAGGACACCCACATCCATTTATCTGTGGCACA...CCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGCTAAAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp TGGAACCTTTGTTTGAGGATGGCCCATTTCCCACCCAAGGGCCAGGCAATCTCCGAAGACAACTACCAATaGGAAACCACATACAGGAAG +
Preference number: 2 (lower is better)
Translates to: WNLCLRMAHFPPKGQAISEDNYQ*ETTYRK
Trigger: CTTCCTGTATGTGGTTTCCCATTGGTAGTTGTCTTC...GGAGATTGCCTGGCCCTTGGGTGGGAAATGGGCCATCCTCAAACAAAGGTTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp GGGATTAGTTCTACCACCTCTAAACAGTCACATTCAGTATTCACGGAAGCACGTGACTACCAGCATCACTaGGCAGCGGAGTGTCTTGGC +
Preference number: 2 (lower is better)
Translates to: GISSTTSKQSHSVFTEARDYQHH*AAECLG
Trigger: GCCAAGACACTCCGCTGCCCAGTGATGCTGGTAGTC...ACGTGCTTCCGTGAATACTGAATGTGACTGTTTAGAGGTGGTAGAACTAATCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp AAGAGAAGACAACTACCAATGGGAAACCACATACAGGAAGGAGGACCTGATATAGACACCTCCATGGTGTaGTTGACCTGGCCCATCCCC +
Preference number: 2 (lower is better)
Translates to: KRRQLPMGNHIQEGGPDIDTSMV*LTWPIP
Trigger: GGGGATGGGCCAGGTCAACCACACCATGGAGGTGTC...TATATCAGGTCCTCCTTCCTGTATGTGGTTTCCCATTGGTAGTTGTCTTCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp TCCAATACTTGGAGTGCTATCTACAGTAAGGGATTAGTTCTACCACCTCTAAACGGGGAGGGGCCACACTaGGTGAGACAGGAGTGTGTA +
Preference number: 2 (lower is better)
Translates to: SNTWSAIYSKGLVLPPLNGEGPH*VRQECV
Trigger: TACACACTCCTGTCTCACTCAGTGTGGCCCCTCCCC...GTTTAGAGGTGGTAGAACTAATCCCTTACTGTAGATAGCACTCCAAGTATTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp TCCAATACTTGGAGTGCTATCTACAGTAAGGGATTAGTTCTACCACCTCTAAACGGCTGCCCACTGGTCTaGCTCCCACTCACATCAGAG +
Preference number: 2 (lower is better)
Translates to: SNTWSAIYSKGLVLPPLNGCPLV*LPLTSE
Trigger: CTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCC...GTTTAGAGGTGGTAGAACTAATCCCTTACTGTAGATAGCACTCCAAGTATTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp AAGATGTCCAATACTTGGAGTGCTATCTACAGTAAGGGATTAGTTCTACCACCTTGGGACAAGGCCCTGTaGTGGCAGGGTATGGGGGTT +
Preference number: 2 (lower is better)
Translates to: KMSNTWSAIYSKGLVLPPWDKAL*WQGMGV
Trigger: AACCCCCATACCCTGCCACCACAGGGCCTTGTCCCA...AGGTGGTAGAACTAATCCCTTACTGTAGATAGCACTCCAAGTATTGGACATCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp GGCAATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTCCCATCTGTGTCAGCTTCCAAAGGGATaGGTAATCATGAAGTTCTCA +
Preference number: 2 (lower is better)
Translates to: GNLQPLQQAEVIVSSHLCQLPKG*VIMKFS
Trigger: TGAGAACTTCATGATTACCCATCCCTTTGGAAGCTG...ACACAGATGGGAAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGATTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp GAGACAGGAGTGTGTAAGGCGAGCCCCTCACACCATCTAAGACTGTTGTGCTGTCAGCTTCCAAAGGGATaGGTAATCATGAAGTTCTCA +
Preference number: 2 (lower is better)
Translates to: ETGVCKASPSHHLRLLCCQLPKG*VIMKFS
Trigger: TGAGAACTTCATGATTACCCATCCCTTTGGAAGCTG...ACAGCACAACAGTCTTAGATGGTGTGAGGGGCTCGCCTTACACACTCCTGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp ATGGCTTACAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAATGGATGTGGGGAAGGTCGTAGTGGTTaGGTCCAGTTTGGAGTTACA +
Preference number: 2 (lower is better)
Translates to: MAYSYRKGRHVPQINGCGEGRSG*VQFGVT
Trigger: TGTAACTCCAAACTGGACCCAACCACTACGACCTTC...CCCACATCCATTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTGTAAGCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp ATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTCCCATCTGTGTCTTTTTGACCAGGGCACTGTaGCAAATACTTGGTGAAATC +
Preference number: 2 (lower is better)
Translates to: ISSPSSKQRSLYLPICVFLTRAL*QILGEI
Trigger: GATTTCACCAAGTATTTGTCACAGTGCCCTGGTCAA...AAAGACACAGATGGGAAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp GGGATTAGTTCTACCACCTCTAAACAGTCACATTCAGTATTCACGGAAGCACGTTTACACCACCTGTCCTaGCCAGAGAGCACCAGGAAA +
Preference number: 2 (lower is better)
Translates to: GISSTTSKQSHSVFTEARLHHLS*PESTRK
Trigger: TTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAA...ACGTGCTTCCGTGAATACTGAATGTGACTGTTTAGAGGTGGTAGAACTAATCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp ACTGGACTCCAGAGCAGTCTAGAAATGGCTTACAGTTACAGAAAGGGGCGGCATCAACATTTTAACCTCTaGCAACAGGGACAAGAGACC +
Preference number: 2 (lower is better)
Translates to: TGLQSSLEMAYSYRKGRHQHFNL*QQGQET
Trigger: GGTCTCTTGTCCCTGTTGGCAGAGGTTAAAATGTTG...ATGCCGCCCCTTTCTGTAACTGTAAGCCATTTCTAGACTGCTCTGGAGTCCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp ATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTCCCATCTGTGTCTTTCAACATTTTAACCTCTaGCAACAGGGACAAGAGACC +
Preference number: 2 (lower is better)
Translates to: ISSPSSKQRSLYLPICVFQHFNL*QQGQET
Trigger: GGTCTCTTGTCCCTGTTGGCAGAGGTTAAAATGTTG...AAAGACACAGATGGGAAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp CATCTGTGTCTTTCTAACAAGCTCACTTCTCAAGTATTGTCTGTGACACACTGGGGGACCTACAGTACCTaGCAGCTTCCAAAGGGATGG +
Preference number: 2 (lower is better)
Translates to: HLCLSNKLTSQVLSVTHWGTYST*QLPKGW
Trigger: CCATCCCTTTGGAAGCTGGCAGGTACTGTAGGTCCC...CCAGTGTGTCACAGACAATACTTGAGAAGTGAGCTTGTTAGAAAGACACAGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp GGGATTAGTTCTACCACCTCTAAACAGTCACATTCAGTATTCACGGAAGCACGTATCCAGGGGCTGGGCTaGGCTTTCTTCAGTACTGTA +
Preference number: 2 (lower is better)
Translates to: GISSTTSKQSHSVFTEARIQGLG*AFFSTV
Trigger: TACAGTACTGAAGAAAGCCCAGCCCAGCCCCTGGAT...ACGTGCTTCCGTGAATACTGAATGTGACTGTTTAGAGGTGGTAGAACTAATCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp TTTAGCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGCAGCTTCCAAAGGGATaGGTAATCATGAAGTTCTCA +
Preference number: 2 (lower is better)
Translates to: FSSLPTIFKPHICQIQGLQLPKG*VIMKFS
Trigger: TGAGAACTTCATGATTACCCATCCCTTTGGAAGCTG...CAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp ACAGATAAATGGATGTGGGTGTCCTCTTGCCTCAGAACACCCATACAATACCACTCCTGGCTGAAGAGATaGGAGAGTACAGTGTCTGGT +
Preference number: 2 (lower is better)
Translates to: TDKWMWVSSCLRTPIQYHSWLKR*ESTVSG
Trigger: ACCAGACACTGTACTCTCCCATCTCTTCAGCCAGGA...GTGGTATTGTATGGGTGTTCTGAGGCAAGAGGACACCCACATCCATTTATCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp GATATCTTAAGAACACAGCAAAAAGATGTCCAATACTTGGAGTGCTATCTACAGGGCTGCCCACTGGTCTaGCTCCCACTCACATCAGAG +
Preference number: 2 (lower is better)
Translates to: DILRTQQKDVQYLECYLQGCPLV*LPLTSE
Trigger: CTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCC...CTGTAGATAGCACTCCAAGTATTGGACATCTTTTTGCTGTGTTCTTAAGATATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp CATCTGTGTCTTTCTAACAAGCTCACTTCTCAAGTATTGTCTGTGACACACTGGTTACACCACCTGTCCTaGCCAGAGAGCACCAGGAAA +
Preference number: 2 (lower is better)
Translates to: HLCLSNKLTSQVLSVTHWLHHLS*PESTRK
Trigger: TTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAA...CCAGTGTGTCACAGACAATACTTGAGAAGTGAGCTTGTTAGAAAGACACAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR GCA 90 bp TCCAATACTTGGAGTGCTATCTACAGTAAGGGATTAGTTCTACCACCTCTAAACGGGACCTACAGTACCTaGCAGCTTCCAAAGGGATGG +
Preference number: 2 (lower is better)
Translates to: SNTWSAIYSKGLVLPPLNGTYST*QLPKGW
Trigger: CCATCCCTTTGGAAGCTGGCAGGTACTGTAGGTCCC...GTTTAGAGGTGGTAGAACTAATCCCTTACTGTAGATAGCACTCCAAGTATTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp CAGTCTAGAAATGGCTTACAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAATGTGCCACAGATAAATaGATGTGGGTGTCCTCTTGC +
Preference number: 2 (lower is better)
Translates to: QSRNGLQLQKGAACATDKCATDK*MWVSSC
Trigger: GCAAGAGGACACCCACATCCATTTATCTGTGGCACA...TTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTGTAAGCCATTTCTAGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR TCA 90 bp ACAGATAAATGGATGTGGGTGTCCTCTTGCCTCAGAACACCCATACAATACCACTGGCTACCATCCTCATaGCTGTCACTTCTACTATTA +
Preference number: 2 (lower is better)
Translates to: TDKWMWVSSCLRTPIQYHWLPSS*LSLLLL
Trigger: TAATAGTAGAAGTGACAGTCATGAGGATGGTAGCCA...GTGGTATTGTATGGGTGTTCTGAGGCAAGAGGACACCCACATCCATTTATCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CCA 90 bp GGGATTAGTTCTACCACCTCTAAACAGTCACATTCAGTATTCACGGAAGCACGTTATTCAAGACCAGCCTaGGCTACAGAAAGATTGCTC +
Preference number: 2 (lower is better)
Translates to: GISSTTSKQSHSVFTEARYSRPA*ATERLL
Trigger: GAGCAATCTTTCTGTAGCCCAGGCTGGTCTTGAATA...ACGTGCTTCCGTGAATACTGAATGTGACTGTTTAGAGGTGGTAGAACTAATCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073139.14
3UTR TCA 72 bp CCCATCCCCTCACTGCTGTCTGAGTGGGCGCAGGGCTaGGGGCGGCTGCCGTCCACGGAACTGGCGCTGGTG +
Preference number: 3 (lower is better)
Translates to: PIPSLLSEWAQG*GRLPSTELALV
Trigger: CACCAGCGCCAGTTCCGTGGACGGCAGCCGCCCTCAGCCCTGCGCCCACTCAGACAGCAGTGAGGGGATGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR CCA 72 bp GTGACCTTTGCCTCAGGGTGGGACAAGGCCCTGTGGTaGCAGGGTATGGGGGTTCCTGCCCCCATGTCAGGG +
Preference number: 3 (lower is better)
Translates to: VTFASGWDKALW*QGMGVPAPMSG
Trigger: CCCTGACATGGGGGCAGGAACCCCCATACCCTGCCACCACAGGGCCTTGTCCCACCCTGAGGCAAAGGTCAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR CCA 72 bp GTACCACACTCGGGAGCATGGCGGCCAGCTGCTCCATaGAGGGGAACTGGTACCCCTGAGGGAACTGTGACG +
Preference number: 3 (lower is better)
Translates to: VPHSGAWRPAAP*RGTGTPEGTVT
Trigger: CGTCACAGTTCCCTCAGGGGTACCAGTTCCCCTCCATGGAGCAGCTGGCCGCCATGCTCCCGAGTGTGGTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR GCA 72 bp ACCTCTGCCAACAGGGACAAGAGACCAGGTGACCTTTaGCTCAGGGTGGGACAAGGCCCTGTGGTGGCAGGG +
Preference number: 3 (lower is better)
Translates to: TSANRDKRPGDL*LRVGQGPVVAG
Trigger: CCCTGCCACCACAGGGCCTTGTCCCACCCTGAGGCAAAGGTCACCTGGTCTCTTGTCCCTGTTGGCAGAGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CAA 90 bp AGTACAGTGTCTGGTAAAGTGCTGGTCAAGCCAGAGAGCTTGGTGGCAGCCCAGGGGCAGCGGAGTGTCTaGGCATTGGGCACCGTCCCA +
Preference number: 3 (lower is better)
Translates to: STVSGKVLVKPESLVAAQGQRSV*ALGTVP
Trigger: TGGGACGGTGCCCAATGCCAAGACACTCCGCTGCCC...CTGGGCTGCCACCAAGCTCTCTGGCTTGACCAGCACTTTACCAGACACTGTACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR GCA 72 bp CTGGGAACAAGGAGCCAGCACCCCTTCCTCAGCAGGTaGATTATCTCCGACTACCAGCATCACTGGGCAGCG +
Preference number: 3 (lower is better)
Translates to: LGTRSQHPFLSR*IISDYQHHWAA
Trigger: CGCTGCCCAGTGATGCTGGTAGTCGGAGATAATGCACCTGCTGAGGAAGGGGTGCTGGCTCCTTGTTCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160915.8
3UTR-3UTR CAA 90 bp CCCTGGTTGTGTCACCTGAGGAAGACCACCAGAATCTGCCATCTTCAGGAAGGTGGGCAGCGGAGTGTCTaGGCATTGGGCACCGTCCCA +
Preference number: 3 (lower is better)
Translates to: PWLCHLRKTTRICHLQEGGQRSV*ALGTVP
Trigger: TGGGACGGTGCCCAATGCCAAGACACTCCGCTGCCC...ACCTTCCTGAAGATGGCAGATTCTGGTGGTCTTCCTCAGGTGACACAACCAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR-3UTR CAA 90 bp AGCATCACTGGGCAGCGGAGTGTCTTGGCATTGGGCACCGTCCCAGGTCGGTTAAGGTCTCTGCGGCTGTaGTACATGTTCCAGAAGAGC +
Preference number: 3 (lower is better)
Translates to: SITGQRSVLALGTVPGRLRSLRL*YMFQKS
Trigger: GCTCTTCTGGAACATGTACAACAGCCGCAGAGACCT...TAACCGACCTGGGACGGTGCCCAATGCCAAGACACTCCGCTGCCCAGTGATGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR CCA 72 bp CCCCATGTCAGGGTTCTCCATATTCTTCAGCCTGGCTaGCCTTACACCACCTGTCCTGCCCAGAGAGCACCA +
Preference number: 3 (lower is better)
Translates to: PHVRVLHILQPG*PYTTCPAQRAP
Trigger: TGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGAAGAATATGGAGAACCCTGACATGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR TCA 72 bp ATCAGCGCCCTGGGGCAGCCAGGCAGCCTAAACAGTTaGGCCTTCCCTGTGATAGGAAACACGACACACGTA +
Preference number: 3 (lower is better)
Translates to: ISALGQPGSLNS*AFPVIGNTTHV
Trigger: TACGTGTGTCGTGTTTCCTATCACAGGGAAGGCTCAACTGTTTAGGCTGCCTGGCTGCCCCAGGGCGCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073139.14
3UTR-3UTR CAA 90 bp CAGCGGAGTGTCTTGGCATTGGGCACCGTCCCAGGTCGGTTAATATCAAGGTCTAGTCAGCTTCCCTGGTaGTGTCACCTGAGGAAGACC +
Preference number: 3 (lower is better)
Translates to: QRSVLALGTVPGRLISRSSQLPW*CHLRKT
Trigger: GGTCTTCCTCAGGTGACACAACCAGGGAAGCTGACT...AGACCTTGATATTAACCGACCTGGGACGGTGCCCAATGCCAAGACACTCCGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR TCA 72 bp CATTTTAACCTCTGCCAACAGGGACAAGAGACCAGGTaGCCTTTGCCTCAGGGTGGGACAAGGCCCTGTGGT +
Preference number: 3 (lower is better)
Translates to: HFNLCQQGQETR*PLPQGGTRPCG
Trigger: ACCACAGGGCCTTGTCCCACCCTGAGGCAAAGGTCACCTGGTCTCTTGTCCCTGTTGGCAGAGGTTAAAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR GCA 72 bp CCCTGGTTGTGTCACCTGAGGAAGACCACCAGAATCTaGCATCTTCAGGAAGGTCGTAGTGGTTGGGTCCAG +
Preference number: 3 (lower is better)
Translates to: PWLCHLRKTTRI*HLQEGRSGWVQ
Trigger: CTGGACCCAACCACTACGACCTTCCTGAAGATGGCAGATTCTGGTGGTCTTCCTCAGGTGACACAACCAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR CCA 72 bp TGCGGCTGTTGTACATGTTCCAGAAGAGCTGCAGGTTaGCCTGGTTCACCACGTTTGAGATCTGCTGCCGGT +
Preference number: 3 (lower is better)
Translates to: CGCCTCSRRAAG*PGSPRLRSAAG
Trigger: ACCGGCAGCAGATCTCAAACGTGGTGAACCAGGCCAACCTGCAGCTCTTCTGGAACATGTACAACAGCCGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR TCA 72 bp ATAGTTGTGGGCTGTAGGAGGCATGGAACCTTTGTTTaGGGATGGCCCATTTCCCACCCAAGGGCCAGGCAA +
Preference number: 3 (lower is better)
Translates to: IVVGCRRHGTFV*GWPISHPRARQ
Trigger: TTGCCTGGCCCTTGGGTGGGAAATGGGCCATCCTCAAACAAAGGTTCCATGCCTCCTACAGCCCACAACTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR GCA 72 bp AGGTCTCTGCGGCTGTTGTACATGTTCCAGAAGAGCTaGAGGTTGGCCTGGTTCACCACGTTTGAGATCTGC +
Preference number: 3 (lower is better)
Translates to: RSLRLLYMFQKS*RLAWFTTFEIC
Trigger: GCAGATCTCAAACGTGGTGAACCAGGCCAACCTGCAGCTCTTCTGGAACATGTACAACAGCCGCAGAGACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR GCA 72 bp TTTGGAGTTACACTCAACCACCCCTTCCTCAGCAGGTaGATTATCTCCGACTACCAGCATCACTGGGCAGCG +
Preference number: 3 (lower is better)
Translates to: FGVTLNHPFLSR*IISDYQHHWAA
Trigger: CGCTGCCCAGTGATGCTGGTAGTCGGAGATAATGCACCTGCTGAGGAAGGGGTGGTTGAGTGTAACTCCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR CCA 72 bp CTCTGCACCAGCTCCGTGTTGTTCACCAGCTCCTCCTaGCTGAAGAGATGGGAGAGTACAGTGTCTGGTAAA +
Preference number: 3 (lower is better)
Translates to: LCTSSVLFTSSS*LKRWESTVSGK
Trigger: TTTACCAGACACTGTACTCTCCCATCTCTTCAGCCAGGAGGAGCTGGTGAACAACACGGAGCTGGTGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR-3UTR CAA 90 bp GTGTTGTTCACCAGCTCCTCCTGGCTGAAGAGATGGGAGAGTACAGTGTCTGGTAGGTCTCTGCGGCTGTaGTACATGTTCCAGAAGAGC +
Preference number: 3 (lower is better)
Translates to: VLFTSSSWLKRWESTVSGRSLRL*YMFQKS
Trigger: GCTCTTCTGGAACATGTACAACAGCCGCAGAGACCT...ACCAGACACTGTACTCTCCCATCTCTTCAGCCAGGAGGAGCTGGTGAACAACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR TCA 72 bp GCCCAAGTTGACCAGGGCACTGTGACAAATACTTGGTaGAATCTGGGACAAGAGGGACCTACAGTACCTGCC +
Preference number: 3 (lower is better)
Translates to: AQVDQGTVTNTW*NLGQEGPTVPA
Trigger: GGCAGGTACTGTAGGTCCCTCTTGTCCCAGATTTCACCAAGTATTTGTCACAGTGCCCTGGTCAACTTGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR TCA 72 bp TTAGTGCTTTCTCTCCTCTCTGGGGATGAGAGCAGATaGAACCAATGGCCAGGCTGTGAGCGCCTACTTGGT +
Preference number: 3 (lower is better)
Translates to: LVLSLLSGDESR*NQWPGCERLLG
Trigger: ACCAAGTAGGCGCTCACAGCCTGGCCATTGGTTTCATCTGCTCTCATCCCCAGAGAGGAGAGAAAGCACTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR GCA 72 bp TGTAAGGCGAGCCCCTCACACCATCTAAGACTGTTGTaGTGTGCTGTCCCAAGGTGGATCCCCTCATTTCTT +
Preference number: 3 (lower is better)
Translates to: CKASPSHHLRLL*CAVPRWIPSFL
Trigger: AAGAAATGAGGGGATCCACCTTGGGACAGCACAGCACAACAGTCTTAGATGGTGTGAGGGGCTCGCCTTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR GCA 72 bp TTTAGCTCACTACCCACCATCTTCAAACCTCACATCTaGCAGATCCAGGGGCTGGGCTGGGCTTTCTTCAGT +
Preference number: 3 (lower is better)
Translates to: FSSLPTIFKPHI*QIQGLGWAFFS
Trigger: ACTGAAGAAAGCCCAGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGCTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR CCA 72 bp AGGAAAGGGACACTCTTAAGGTCCAAGGCTGCCCACTaGTCTGACTCCCACTCACATCAGAGCTTTAGCTCA +
Preference number: 3 (lower is better)
Translates to: RKGTLLRSKAAH*SDSHSHQSFSS
Trigger: TGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCTTGGACCTTAAGAGTGTCCCTTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR CCA 72 bp AGAGGGACCTACAGTACCTGCCAGCTTCCAAAGGGATaGGTAATCATGAAGTTCTCAGGGGCTACACACAGC +
Preference number: 3 (lower is better)
Translates to: RGTYSTCQLPKG*VIMKFSGATHS
Trigger: GCTGTGTGTAGCCCCTGAGAACTTCATGATTACCCATCCCTTTGGAAGCTGGCAGGTACTGTAGGTCCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR CCA 72 bp TCCGTGTTGTTCACCAGCTCCTCCTGGCTGAAGAGATaGGAGAGTACAGTGTCTGGTAAAGTGCTGGTCAAG +
Preference number: 3 (lower is better)
Translates to: SVLFTSSSWLKR*ESTVSGKVLVK
Trigger: CTTGACCAGCACTTTACCAGACACTGTACTCTCCCATCTCTTCAGCCAGGAGGAGCTGGTGAACAACACGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR-3UTR CAA 90 bp CCCTGGTTGTGTCACCTGAGGAAGACCACCAGAATCTGCCATCTTCAGGAAGGTATCCAGCCTTTGCCGTaGGGGTCAATGTTCATCAAC +
Preference number: 3 (lower is better)
Translates to: PWLCHLRKTTRICHLQEGIQPLP*GSMFIN
Trigger: GTTGATGAACATTGACCCCAACGGCAAAGGCTGGAT...ACCTTCCTGAAGATGGCAGATTCTGGTGGTCTTCCTCAGGTGACACAACCAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR-3UTR CAA 90 bp CCCAAGGGCCAGGCAATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTCACTGTGACAAATACTaGGTGAAATCTGGGACAAGA +
Preference number: 3 (lower is better)
Translates to: PKGQAISSPSSKQRSLYLHCDKY*VKSGTR
Trigger: TCTTGTCCCAGATTTCACCAAGTATTTGTCACAGTG...AAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGATTGCCTGGCCCTTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CAA 90 bp TGGTTGTGTCACCTGAGGAAGACCACCAGAATCTGCCATCTTCAGGAAGGTCGTATCCAGCCTTTGCCGTaGGGGTCAATGTTCATCAAC +
Preference number: 3 (lower is better)
Translates to: WLCHLRKTTRICHLQEGRIQPLP*GSMFIN
Trigger: GTTGATGAACATTGACCCCAACGGCAAAGGCTGGAT...ACGACCTTCCTGAAGATGGCAGATTCTGGTGGTCTTCCTCAGGTGACACAACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
3UTR CCA 72 bp TTCAAACCTCACATCTGCCAGATCCAGGGGCTGGGCTaGGCTTTCTTCAGTACTGTATCTAACTATCCTGGC +
Preference number: 3 (lower is better)
Translates to: FKPHICQIQGLG*AFFSTVSNYPG
Trigger: GCCAGGATAGTTAGATACAGTACTGAAGAAAGCCCAGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR CCA 72 bp CAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAATaGATGTGGGTGTCCTCTTGCCTCAGAACACCCATA +
Preference number: 3 (lower is better)
Translates to: QLQKGAACATDK*MWVSSCLRTPI
Trigger: TATGGGTGTTCTGAGGCAAGAGGACACCCACATCCATTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR CCA 72 bp ACCAGAATCTGCCATCTTCAGGAAGGTCGTAGTGGTTaGGTCCAGTTTGGAGTTACACTCAACCACCCCTTC +
Preference number: 3 (lower is better)
Translates to: TRICHLQEGRSG*VQFGVTLNHPF
Trigger: GAAGGGGTGGTTGAGTGTAACTCCAAACTGGACCCAACCACTACGACCTTCCTGAAGATGGCAGATTCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR CCA 72 bp CCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTaGGCTGGGCTTTCTTCAGTACTGTATCTAACTATC +
Preference number: 3 (lower is better)
Translates to: PSSNLTSARSRG*AGLSSVLYLTI
Trigger: GATAGTTAGATACAGTACTGAAGAAAGCCCAGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR CCA 72 bp ACCAGAATCTGCCATCTTCAGGAAGGTCGTAGTGGTTaGGTCCAGTTTGGAGTTACACTCAACCTGGGAACA +
Preference number: 3 (lower is better)
Translates to: TRICHLQEGRSG*VQFGVTLNLGT
Trigger: TGTTCCCAGGTTGAGTGTAACTCCAAACTGGACCCAACCACTACGACCTTCCTGAAGATGGCAGATTCTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160915.8
3UTR-3UTR CAA 90 bp GAGACAGGAGTGTGTAAGGCGAGCCCCTCACACCATCTAAGACTGTTGTGCTGTCACTGTGACAAATACTaGGTGAAATCTGGGACAAGA +
Preference number: 3 (lower is better)
Translates to: ETGVCKASPSHHLRLLCCHCDKY*VKSGTR
Trigger: TCTTGTCCCAGATTTCACCAAGTATTTGTCACAGTG...ACAGCACAACAGTCTTAGATGGTGTGAGGGGCTCGCCTTACACACTCCTGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR TCA 72 bp AAACAGTCACATTCAGTATTCACGGAAGCACGTGAGTaGACTGAACCGGGGATAGGAAACACTCCACTGGAC +
Preference number: 3 (lower is better)
Translates to: KQSHSVFTEARE*TEPGIGNTPLD
Trigger: GTCCAGTGGAGTGTTTCCTATCCCCGGTTCAGTTCACTCACGTGCTTCCGTGAATACTGAATGTGACTGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CAA 90 bp TCCAATACTTGGAGTGCTATCTACAGTAAGGGATTAGTTCTACCACCTCTAAACCTCACTTCTCAAGTATaGTCTGTGACACACTGGCCC +
Preference number: 3 (lower is better)
Translates to: SNTWSAIYSKGLVLPPLNLTSQV*SVTHWP
Trigger: GGGCCAGTGTGTCACAGACAATACTTGAGAAGTGAG...GTTTAGAGGTGGTAGAACTAATCCCTTACTGTAGATAGCACTCCAAGTATTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CAA 90 bp CATCTGTGTCTTTCTAACAAGCTCACTTCTCAAGTATTGTCTGTGACACACTGGCACTGTGACAAATACTaGGTGAAATCTGGGACAAGA +
Preference number: 3 (lower is better)
Translates to: HLCLSNKLTSQVLSVTHWHCDKY*VKSGTR
Trigger: TCTTGTCCCAGATTTCACCAAGTATTTGTCACAGTG...CCAGTGTGTCACAGACAATACTTGAGAAGTGAGCTTGTTAGAAAGACACAGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
3UTR-3UTR CAA 90 bp TCCAATACTTGGAGTGCTATCTACAGTAAGGGATTAGTTCTACCACCTCTAAACCACTGTGACAAATACTaGGTGAAATCTGGGACAAGA +
Preference number: 3 (lower is better)
Translates to: SNTWSAIYSKGLVLPPLNHCDKY*VKSGTR
Trigger: TCTTGTCCCAGATTTCACCAAGTATTTGTCACAGTG...GTTTAGAGGTGGTAGAACTAATCCCTTACTGTAGATAGCACTCCAAGTATTGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
CDS-3UTR TCA 90 bp CACCTGTCCTGCCCAGAGAGCACCAGGAAAATGGCTGTCTGTCTAGAGCGCCCTGAGTGGGCGCAGGGCTaGGGGCGGCTGCCGTCCACG +
Preference number: 4 (lower is better)
Translates to: HLSCPESTRKMAVCLERPEWAQG*GRLPST
Trigger: CGTGGACGGCAGCCGCCCTCAGCCCTGCGCCCACTC...AGGGCGCTCTAGACAGACAGCCATTTTCCTGGTGCTCTCTGGGCAGGACAGGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR TCA 90 bp GGTCCAAGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACGAGTGGGCGCAGGGCTaGGGGCGGCTGCCGTCCACG +
Preference number: 4 (lower is better)
Translates to: GPRLPTGLTPTHIRALAHEWAQG*GRLPST
Trigger: CGTGGACGGCAGCCGCCCTCAGCCCTGCGCCCACTC...GTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCTTGGACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR TCA 90 bp CCCAAGGGCCAGGCAATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTGAGTGGGCGCAGGGCTaGGGGCGGCTGCCGTCCACG +
Preference number: 4 (lower is better)
Translates to: PKGQAISSPSSKQRSLYLEWAQG*GRLPST
Trigger: CGTGGACGGCAGCCGCCCTCAGCCCTGCGCCCACTC...AAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGATTGCCTGGCCCTTGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp AGGCCCTGTGGTGGCAGGGTATGGGGGTTCCTGCCCCCATGTCAGGGTTCTCCACCACACTCGGGAGCATaGCGGCCAGCTGCTCCATGG +
Preference number: 4 (lower is better)
Translates to: RPCGGRVWGFLPPCQGSPPHSGA*RPAAPW
Trigger: CCATGGAGCAGCTGGCCGCCATGCTCCCGAGTGTGG...TGGAGAACCCTGACATGGGGGCAGGAACCCCCATACCCTGCCACCACAGGGCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp CCAGCATCACTGGGCAGCGGAGTGTCTTGGCATTGGGCACCGTCCCAGGTCGGTCCACACTCGGGAGCATaGCGGCCAGCTGCTCCATGG +
Preference number: 4 (lower is better)
Translates to: PASLGSGVSWHWAPSQVGPHSGA*RPAAPW
Trigger: CCATGGAGCAGCTGGCCGCCATGCTCCCGAGTGTGG...ACCGACCTGGGACGGTGCCCAATGCCAAGACACTCCGCTGCCCAGTGATGCTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160915.8
CDS-3UTR TCA 90 bp GGTTACAGGAAAGGGACACTCTTAAGGTCCAAGGCTGCCCACTGGTCTGACTCCGAGTGGGCGCAGGGCTaGGGGCGGCTGCCGTCCACG +
Preference number: 4 (lower is better)
Translates to: GYRKGTLLRSKAAHWSDSEWAQG*GRLPST
Trigger: CGTGGACGGCAGCCGCCCTCAGCCCTGCGCCCACTC...GGAGTCAGACCAGTGGGCAGCCTTGGACCTTAAGAGTGTCCCTTTCCTGTAACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR GCA 90 bp GGCCCTGTGGTGGCAGGGTATGGGGGTTCCTGCCCCCATGTCAGGGTTCTCCATGTGCGAGGCGGGTCATaGTGGCTGAGGGCATGTAGC +
Preference number: 4 (lower is better)
Translates to: GPVVAGYGGSCPHVRVLHVRGGS*WLRACS
Trigger: GCTACATGCCCTCAGCCAGCATGACCCGCCTCGCAC...ATGGAGAACCCTGACATGGGGGCAGGAACCCCCATACCCTGCCACCACAGGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp CCCTGTGGTGGCAGGGTATGGGGGTTCCTGCCCCCATGTCAGGGTTCTCCATATGCGGGTCATGCTGGCTaGGGGCATGTAGCCCATGCC +
Preference number: 4 (lower is better)
Translates to: PCGGRVWGFLPPCQGSPYAGHAG*GHVAHA
Trigger: GGCATGGGCTACATGCCCTCAGCCAGCATGACCCGC...ATATGGAGAACCCTGACATGGGGGCAGGAACCCCCATACCCTGCCACCACAGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp TCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAATGGCGGGTCATGCTGGCTaGGGGCACTGCTCCTCCACT +
Preference number: 4 (lower is better)
Translates to: SAWLALHHLSCPESTRKMAGHAG*GHCSST
Trigger: AGTGGAGGAGCAGTGCCCTCAGCCAGCATGACCCGC...CATTTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000162578.8
CDS-3UTR GCA 90 bp CACCTGTCCTGCCCAGAGAGCACCAGGAAAATGGCTGTCTGTCTAGAGCGCCCTGTGCGAGGCGGGTCATaGTGGCTGAGGGCACTGCTC +
Preference number: 4 (lower is better)
Translates to: HLSCPESTRKMAVCLERPVRGGS*WLRALL
Trigger: GAGCAGTGCCCTCAGCCAGCATGACCCGCCTCGCAC...AGGGCGCTCTAGACAGACAGCCATTTTCCTGGTGCTCTCTGGGCAGGACAGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000162578.8
CDS-3UTR CCA 90 bp TCTTCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAACCACACTCGGGAGCATaGCGGCCAGCTGCTCCATGG +
Preference number: 4 (lower is better)
Translates to: SSAWLALHHLSCPESTRKPHSGA*RPAAPW
Trigger: CCATGGAGCAGCTGGCCGCCATGCTCCCGAGTGTGG...TTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGAAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp CCCTGTGGTGGCAGGGTATGGGGGTTCCTGCCCCCATGTCAGGGTTCTCCATATCCACATCATGGTAGGTaGGGATGGCTGGGCGGTTCC +
Preference number: 4 (lower is better)
Translates to: PCGGRVWGFLPPCQGSPYPHHGR*GWLGGS
Trigger: GGAACCGCCCAGCCATCCTCACCTACCATGATGTGG...ATATGGAGAACCCTGACATGGGGGCAGGAACCCCCATACCCTGCCACCACAGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp AGTACAGTGTCTGGTAAAGTGCTGGTCAAGCCAGAGAGCTTGGTGGCAGCCCAGCCCCTGAGGGAACTGTaGCGCTCCCACCTGCTGCCC +
Preference number: 4 (lower is better)
Translates to: STVSGKVLVKPESLVAAQPLREL*RSHLLP
Trigger: GGGCAGCAGGTGGGAGCGTCACAGTTCCCTCAGGGG...CTGGGCTGCCACCAAGCTCTCTGGCTTGACCAGCACTTTACCAGACACTGTACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160915.8
CDS-3UTR TCA 90 bp CACCTGTCCTGCCCAGAGAGCACCAGGAAAATGGCTGTCTGTCTAGAGCGCCCTCCTCCATGGTGTGGTTaGCCTGGCCCATCCCCTCAC +
Preference number: 4 (lower is better)
Translates to: HLSCPESTRKMAVCLERPPPWCG*PGPSPH
Trigger: GTGAGGGGATGGGCCAGGTCAACCACACCATGGAGG...AGGGCGCTCTAGACAGACAGCCATTTTCCTGGTGCTCTCTGGGCAGGACAGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR GCA 90 bp GCCCCCATGTCAGGGTTCTCCATATTCTTCAGCCTGGCTGGCCTTACACCACCTGTGCGAGGCGGGTCATaGTGGCTGAGGGCACTGCTC +
Preference number: 4 (lower is better)
Translates to: APMSGFSIFFSLAGLTPPVRGGS*WLRALL
Trigger: GAGCAGTGCCCTCAGCCAGCATGACCCGCCTCGCAC...AGGTGGTGTAAGGCCAGCCAGGCTGAAGAATATGGAGAACCCTGACATGGGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
CDS-3UTR CCA 90 bp CCCTGTGGTGGCAGGGTATGGGGGTTCCTGCCCCCATGTCAGGGTTCTCCATATGGAGTGTCTTGGCATTaGGCACCGTCCCAGGTCGGT +
Preference number: 4 (lower is better)
Translates to: PCGGRVWGFLPPCQGSPYGVSWH*APSQVG
Trigger: ACCGACCTGGGACGGTGCCCAATGCCAAGACACTCC...ATATGGAGAACCCTGACATGGGGGCAGGAACCCCCATACCCTGCCACCACAGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp TCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAATGGGCAGCGGAGTGTCTTaGCATTGGGCACCGTCCCAG +
Preference number: 4 (lower is better)
Translates to: SAWLALHHLSCPESTRKMGSGVS*HWAPSQ
Trigger: CTGGGACGGTGCCCAATGCCAAGACACTCCGCTGCC...CATTTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp CCCTGTGGTGGCAGGGTATGGGGGTTCCTGCCCCCATGTCAGGGTTCTCCATATGACACCTCCATGGTGTaGTTGACCTGGCCCATCCCC +
Preference number: 4 (lower is better)
Translates to: PCGGRVWGFLPPCQGSPYDTSMV*LTWPIP
Trigger: GGGGATGGGCCAGGTCAACCACACCATGGAGGTGTC...ATATGGAGAACCCTGACATGGGGGCAGGAACCCCCATACCCTGCCACCACAGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp GAGACAGGAGTGTGTAAGGCGAGCCCCTCACACCATCTAAGACTGTTGTGCTGTCCCCTGAGGGAACTGTaGCGCTCCCACCTGCTGCCC +
Preference number: 4 (lower is better)
Translates to: ETGVCKASPSHHLRLLCCPLREL*RSHLLP
Trigger: GGGCAGCAGGTGGGAGCGTCACAGTTCCCTCAGGGG...ACAGCACAACAGTCTTAGATGGTGTGAGGGGCTCGCCTTACACACTCCTGTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp CCCTGTGGTGGCAGGGTATGGGGGTTCCTGCCCCCATGTCAGGGTTCTCCATATCCAGCTCCTCCTGGCTaGAGAGATGGGAGAGTACAG +
Preference number: 4 (lower is better)
Translates to: PCGGRVWGFLPPCQGSPYPAPPG*RDGRVQ
Trigger: CTGTACTCTCCCATCTCTTCAGCCAGGAGGAGCTGG...ATATGGAGAACCCTGACATGGGGGCAGGAACCCCCATACCCTGCCACCACAGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp ACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGGGCTGGGCTTTCCTCCATGGTGTGGTTaGCCTGGCCCATCCCCTCAC +
Preference number: 4 (lower is better)
Translates to: THHLQTSHLPDPGAGLGFPPWCG*PGPSPH
Trigger: GTGAGGGGATGGGCCAGGTCAACCACACCATGGAGG...AAAGCCCAGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR GCA 90 bp TCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAATGGGAAATCGCAGCTCCTaGAGCCCTGCCATGGTCACG +
Preference number: 4 (lower is better)
Translates to: SAWLALHHLSCPESTRKMGNRSS*SPAMVT
Trigger: CGTGACCATGGCAGGGCTGCAGGAGCTGCGATTTCC...CATTTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000166358.8
CDS-3UTR GCA 90 bp ACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGGGCTGGGCTTTAGCATGGCGGCCAGCTaGTCCATGGAGGGGAACTGG +
Preference number: 4 (lower is better)
Translates to: THHLQTSHLPDPGAGLGFSMAAS*SMEGNW
Trigger: CCAGTTCCCCTCCATGGAGCAGCTGGCCGCCATGCT...AAAGCCCAGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp TCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAATGGCCATGGTCACGTCGTaGAGCAGAAGCCCTGTCAGC +
Preference number: 4 (lower is better)
Translates to: SAWLALHHLSCPESTRKMAMVTS*SRSPVS
Trigger: GCTGACAGGGCTTCTGCTCCACGACGTGACCATGGC...CATTTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000166358.8
CDS-3UTR CCA 90 bp CCCAAGGGCCAGGCAATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTCGGCCAGCTGCTCCATaGAGGGGAACTGGTACCCCT +
Preference number: 4 (lower is better)
Translates to: PKGQAISSPSSKQRSLYLRPAAP*RGTGTP
Trigger: AGGGGTACCAGTTCCCCTCCATGGAGCAGCTGGCCG...AAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGATTGCCTGGCCCTTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GGTCCAAGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACCGGCCAGCTGCTCCATaGAGGGGAACTGGTACCCCT +
Preference number: 4 (lower is better)
Translates to: GPRLPTGLTPTHIRALAHRPAAP*RGTGTP
Trigger: AGGGGTACCAGTTCCCCTCCATGGAGCAGCTGGCCG...GTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCTTGGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp TCTTCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAGACACCTCCATGGTGTaGTTGACCTGGCCCATCCCC +
Preference number: 4 (lower is better)
Translates to: SSAWLALHHLSCPESTRKDTSMV*LTWPIP
Trigger: GGGGATGGGCCAGGTCAACCACACCATGGAGGTGTC...TTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR TCA 90 bp GGTCCAAGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACCCACATCATGGTAGGTaGGGATGGCTGGGCGGTTCC +
Preference number: 4 (lower is better)
Translates to: GPRLPTGLTPTHIRALAHPHHGR*GWLGGS
Trigger: GGAACCGCCCAGCCATCCTCACCTACCATGATGTGG...GTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCTTGGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp GGCCCTGTGGTGGCAGGGTATGGGGGTTCCTGCCCCCATGTCAGGGTTCTCCATAGCACAGCTTGTGATTaGGACCCACATCATGGTAGG +
Preference number: 4 (lower is better)
Translates to: GPVVAGYGGSCPHVRVLHSTACD*DPHHGR
Trigger: CCTACCATGATGTGGGTCTCAATCACAAGCTGTGCT...ATGGAGAACCCTGACATGGGGGCAGGAACCCCCATACCCTGCCACCACAGGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp TTGATGCAAGGGTTACAGGAAAGGGACACTCTTAAGGTCCAAGGCTGCCCACTGCCCCTGAGGGAACTGTaGCGCTCCCACCTGCTGCCC +
Preference number: 4 (lower is better)
Translates to: LMQGLQERDTLKVQGCPLPLREL*RSHLLP
Trigger: GGGCAGCAGGTGGGAGCGTCACAGTTCCCTCAGGGG...CAGTGGGCAGCCTTGGACCTTAAGAGTGTCCCTTTCCTGTAACCCTTGCATCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR GCA 90 bp AGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACTACCCAAGCATGGCGGCCAGCTaGTCCATGGAGGGGAACTGG +
Preference number: 4 (lower is better)
Translates to: RLPTGLTPTHIRALAHYPSMAAS*SMEGNW
Trigger: CCAGTTCCCCTCCATGGAGCAGCTGGCCGCCATGCT...TGGGTAGTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp ACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGGGCTGGGCTTTAGCCCTGTCAGCAGTTaGAGCCTGTGTCCCAGCACC +
Preference number: 4 (lower is better)
Translates to: THHLQTSHLPDPGAGLGFSPVSS*SLCPST
Trigger: GGTGCTGGGACACAGGCTCCAACTGCTGACAGGGCT...AAAGCCCAGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000166358.8
CDS-3UTR CCA 90 bp CACCTGTCCTGCCCAGAGAGCACCAGGAAAATGGCTGTCTGTCTAGAGCGCCCTGGTTATCCATCTCAGTaGCATCCTGGCCGCGGAGCA +
Preference number: 4 (lower is better)
Translates to: HLSCPESTRKMAVCLERPGYPSQ*HPGRGA
Trigger: TGCTCCGCGGCCAGGATGCCACTGAGATGGATAACC...AGGGCGCTCTAGACAGACAGCCATTTTCCTGGTGCTCTCTGGGCAGGACAGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000166358.8
CDS-3UTR CCA 90 bp TCTTCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAAGCCAGAGAGCTTGGTaGCAGCCCAGTCAATCCAGC +
Preference number: 4 (lower is better)
Translates to: SSAWLALHHLSCPESTRKSQRAW*QPSQSS
Trigger: GCTGGATTGACTGGGCTGCCACCAAGCTCTCTGGCT...TTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGGGCTGGAGTGTCTTGGCATTaGGCACCGTCCCAGGTCGGT +
Preference number: 4 (lower is better)
Translates to: AHYPPSSNLTSARSRGWAGVSWH*APSQVG
Trigger: ACCGACCTGGGACGGTGCCCAATGCCAAGACACTCC...AGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp TCTCTGGGGATGAGAGCAGATGAAACCAATGGCCAGGCTGTGAGCGCCTACTTGGGCAGCGGAGTGTCTTaGCATTGGGCACCGTCCCAG +
Preference number: 4 (lower is better)
Translates to: SLGMRADETNGQAVSAYLGSGVS*HWAPSQ
Trigger: CTGGGACGGTGCCCAATGCCAAGACACTCCGCTGCC...CAAGTAGGCGCTCACAGCCTGGCCATTGGTTTCATCTGCTCTCATCCCCAGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp TCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAATGATGGTGTGGTTGACCTaGCCCATCCCCTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: SAWLALHHLSCPESTRKMMVWLT*PIPSLL
Trigger: CAGCAGTGAGGGGATGGGCCAGGTCAACCACACCAT...CATTTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR CCA 90 bp CACCTGTCCTGCCCAGAGAGCACCAGGAAAATGGCTGTCTGTCTAGAGCGCCCTATGGTGTGGTTGACCTaGCCCATCCCCTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: HLSCPESTRKMAVCLERPMVWLT*PIPSLL
Trigger: CAGCAGTGAGGGGATGGGCCAGGTCAACCACACCAT...AGGGCGCTCTAGACAGACAGCCATTTTCCTGGTGCTCTCTGGGCAGGACAGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR CCA 90 bp ACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGGGCTGGGCTTTGACACCTCCATGGTGTaGTTGACCTGGCCCATCCCC +
Preference number: 4 (lower is better)
Translates to: THHLQTSHLPDPGAGLGFDTSMV*LTWPIP
Trigger: GGGGATGGGCCAGGTCAACCACACCATGGAGGTGTC...AAAGCCCAGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR TCA 90 bp AGCTTTAGCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGGCGGGTCATGCTGGCTaGGGGCACTGCTCCTCCACT +
Preference number: 4 (lower is better)
Translates to: SFSSLPTIFKPHICQIQGAGHAG*GHCSST
Trigger: AGTGGAGGAGCAGTGCCCTCAGCCAGCATGACCCGC...CCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGCTAAAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000162578.8
CDS-3UTR GCA 90 bp TCTCTGGGGATGAGAGCAGATGAAACCAATGGCCAGGCTGTGAGCGCCTACTTGGGAAATCGCAGCTCCTaGAGCCCTGCCATGGTCACG +
Preference number: 4 (lower is better)
Translates to: SLGMRADETNGQAVSAYLGNRSS*SPAMVT
Trigger: CGTGACCATGGCAGGGCTGCAGGAGCTGCGATTTCC...CAAGTAGGCGCTCACAGCCTGGCCATTGGTTTCATCTGCTCTCATCCCCAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000166358.8
CDS-3UTR GCA 90 bp TGTGGGTGTCCTCTTGCCTCAGAACACCCATACAATACCACATACATCATCCCCGACGCTCCCACCTGCTaGCCAGGGGCATCCACGTGG +
Preference number: 4 (lower is better)
Translates to: CGCPLASEHPYNTTYIIPDAPTC*PGASTW
Trigger: CCACGTGGATGCCCCTGGGCAGCAGGTGGGAGCGTC...GGGGATGATGTATGTGGTATTGTATGGGTGTTCTGAGGCAAGAGGACACCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR GCA 90 bp ATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTCCCATCTGTGTCTTTGACGCTCCCACCTGCTaGCCAGGGGCATCCACGTGG +
Preference number: 4 (lower is better)
Translates to: ISSPSSKQRSLYLPICVFDAPTC*PGASTW
Trigger: CCACGTGGATGCCCCTGGGCAGCAGGTGGGAGCGTC...AAAGACACAGATGGGAAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR GCA 90 bp GGCAATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTCCCATCTGTGTAGCATGGCGGCCAGCTaGTCCATGGAGGGGAACTGG +
Preference number: 4 (lower is better)
Translates to: GNLQPLQQAEVIVSSHLCSMAAS*SMEGNW
Trigger: CCAGTTCCCCTCCATGGAGCAGCTGGCCGCCATGCT...ACACAGATGGGAAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGATTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp AGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACTACCCACCTGCAGCCCTGCCATaGTCACGTCGTGGAGCAGAA +
Preference number: 4 (lower is better)
Translates to: RLPTGLTPTHIRALAHYPPAALP*SRRGAE
Trigger: TTCTGCTCCACGACGTGACCATGGCAGGGCTGCAGG...TGGGTAGTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000166358.8
CDS-3UTR CCA 90 bp ATGGCTGTCTGTCTAGAGCGCCCTCTTGTGGCTACCATCCTCATGACTGTCACTCTGGGCGGTTCCCTTTaGGAGAGCCCCGGATCACCA +
Preference number: 4 (lower is better)
Translates to: MAVCLERPLVATILMTVTLGGSL*ESPGSP
Trigger: TGGTGATCCGGGGCTCTCCCAAAGGGAACCGCCCAG...AGTGACAGTCATGAGGATGGTAGCCACAAGAGGGCGCTCTAGACAGACAGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GGCAATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTCCCATCTGTGTCGGCCAGCTGCTCCATaGAGGGGAACTGGTACCCCT +
Preference number: 4 (lower is better)
Translates to: GNLQPLQQAEVIVSSHLCRPAAP*RGTGTP
Trigger: AGGGGTACCAGTTCCCCTCCATGGAGCAGCTGGCCG...ACACAGATGGGAAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGATTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp TCCGTGTTGTTCACCAGCTCCTCCTGGCTGAAGAGATGGGAGAGTACAGTGTCTCGGCCAGCTGCTCCATaGAGGGGAACTGGTACCCCT +
Preference number: 4 (lower is better)
Translates to: SVLFTSSSWLKRWESTVSRPAAP*RGTGTP
Trigger: AGGGGTACCAGTTCCCCTCCATGGAGCAGCTGGCCG...AGACACTGTACTCTCCCATCTCTTCAGCCAGGAGGAGCTGGTGAACAACACGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160915.8
CDS-3UTR CCA 90 bp AGCTTTAGCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCCACACTCGGGAGCATaGCGGCCAGCTGCTCCATGG +
Preference number: 4 (lower is better)
Translates to: SFSSLPTIFKPHICQIQGPHSGA*RPAAPW
Trigger: CCATGGAGCAGCTGGCCGCCATGCTCCCGAGTGTGG...CCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGCTAAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GGTCCAAGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACAGCCAGAGAGCTTGGTaGCAGCCCAGTCAATCCAGC +
Preference number: 4 (lower is better)
Translates to: GPRLPTGLTPTHIRALAHSQRAW*QPSQSS
Trigger: GCTGGATTGACTGGGCTGCCACCAAGCTCTCTGGCT...GTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCTTGGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp AGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACTACCCAGGAGTGTCTTGGCATTaGGCACCGTCCCAGGTCGGT +
Preference number: 4 (lower is better)
Translates to: RLPTGLTPTHIRALAHYPGVSWH*APSQVG
Trigger: ACCGACCTGGGACGGTGCCCAATGCCAAGACACTCC...TGGGTAGTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp CCCAAGGGCCAGGCAATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTGACTACCAGCATCACTaGGCAGCGGAGTGTCTTGGC +
Preference number: 4 (lower is better)
Translates to: PKGQAISSPSSKQRSLYLDYQHH*AAECLG
Trigger: GCCAAGACACTCCGCTGCCCAGTGATGCTGGTAGTC...AAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGATTGCCTGGCCCTTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp CCCAAGGGCCAGGCAATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTATGGTGTGGTTGACCTaGCCCATCCCCTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: PKGQAISSPSSKQRSLYLMVWLT*PIPSLL
Trigger: CAGCAGTGAGGGGATGGGCCAGGTCAACCACACCAT...AAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGATTGCCTGGCCCTTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GGTTACAGGAAAGGGACACTCTTAAGGTCCAAGGCTGCCCACTGGTCTGACTCCGACACCTCCATGGTGTaGTTGACCTGGCCCATCCCC +
Preference number: 4 (lower is better)
Translates to: GYRKGTLLRSKAAHWSDSDTSMV*LTWPIP
Trigger: GGGGATGGGCCAGGTCAACCACACCATGGAGGTGTC...GGAGTCAGACCAGTGGGCAGCCTTGGACCTTAAGAGTGTCCCTTTCCTGTAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR CCA 90 bp ATGAGAGCAGATGAAACCAATGGCCAGGCTGTGAGCGCCTACTTGGTGAGATGGCGAGGCGGGTCATGCTaGCTGAGGGCATGTAGCCCA +
Preference number: 4 (lower is better)
Translates to: MRADETNGQAVSAYLVRWRGGSC*LRACSP
Trigger: TGGGCTACATGCCCTCAGCCAGCATGACCCGCCTCG...CCATCTCACCAAGTAGGCGCTCACAGCCTGGCCATTGGTTTCATCTGCTCTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp GGAGTGTGTAAGGCGAGCCCCTCACACCATCTAAGACTGTTGTGCTGTGCTGTCCCAGCTCCTCCTGGCTaGAGAGATGGGAGAGTACAG +
Preference number: 4 (lower is better)
Translates to: GVCKASPSHHLRLLCCAVPAPPG*RDGRVQ
Trigger: CTGTACTCTCCCATCTCTTCAGCCAGGAGGAGCTGG...GACAGCACAGCACAACAGTCTTAGATGGTGTGAGGGGCTCGCCTTACACACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp ATTCTTCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGACCTGGTTGTGTCACCTaGGGAAGACCACCAGAATCT +
Preference number: 4 (lower is better)
Translates to: ILQPGWPYTTCPAQRAPGPGCVT*GRPPES
Trigger: AGATTCTGGTGGTCTTCCTCAGGTGACACAACCAGG...TCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGAAGAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR GCA 90 bp TGGTTGTGTCACCTGAGGAAGACCACCAGAATCTGCCATCTTCAGGAAGGTCGTAGCATGGCGGCCAGCTaGTCCATGGAGGGGAACTGG +
Preference number: 4 (lower is better)
Translates to: WLCHLRKTTRICHLQEGRSMAAS*SMEGNW
Trigger: CCAGTTCCCCTCCATGGAGCAGCTGGCCGCCATGCT...ACGACCTTCCTGAAGATGGCAGATTCTGGTGGTCTTCCTCAGGTGACACAACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160915.8
CDS-3UTR CCA 90 bp TTTAGCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGCTGGGCGGTTCCCTTTaGGAGAGCCCCGGATCACCA +
Preference number: 4 (lower is better)
Translates to: FSSLPTIFKPHICQIQGLLGGSL*ESPGSP
Trigger: TGGTGATCCGGGGCTCTCCCAAAGGGAACCGCCCAG...CAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGCTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GGTCCAAGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACCCAGGGGCATCCACGTaGCACACCACAAAGTGTTTG +
Preference number: 4 (lower is better)
Translates to: GPRLPTGLTPTHIRALAHPGAST*HTTKCL
Trigger: CAAACACTTTGTGGTGTGCCACGTGGATGCCCCTGG...GTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCTTGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp TCTCTGGGGATGAGAGCAGATGAAACCAATGGCCAGGCTGTGAGCGCCTACTTGGACTACCAGCATCACTaGGCAGCGGAGTGTCTTGGC +
Preference number: 4 (lower is better)
Translates to: SLGMRADETNGQAVSAYLDYQHH*AAECLG
Trigger: GCCAAGACACTCCGCTGCCCAGTGATGCTGGTAGTC...CAAGTAGGCGCTCACAGCCTGGCCATTGGTTTCATCTGCTCTCATCCCCAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp TCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAATGCTCAGTCAGCTTCCCTaGTTGTGTCACCTGAGGAAG +
Preference number: 4 (lower is better)
Translates to: SAWLALHHLSCPESTRKMLSQLP*LCHLRK
Trigger: CTTCCTCAGGTGACACAACCAGGGAAGCTGACTGAG...CATTTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR CCA 90 bp TCTTCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAGGAGACAGATGGCACTaGACACTTCCAGTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: SSAWLALHHLSCPESTRKGDRWH*TLPVCV
Trigger: GACACAGACTGGAAGTGTCCAGTGCCATCTGTCTCC...TTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR CAA 72 bp TATCAGCGCCCTGGGGCAGCCAGGCAGCCTAAACAGTaGAGCCTTCCCTGTGATAGGAAACACGACACACGT +
Preference number: 4 (lower is better)
Translates to: YQRPGAARQPKQ*SLPCDRKHDTR
Trigger: ACGTGTGTCGTGTTTCCTATCACAGGGAAGGCTCAACTGTTTAGGCTGCCTGGCTGCCCCAGGGCGCTGATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073139.14
CDS-3UTR TCA 90 bp ATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTCCCATCTGTGTCTTTCCTCCATGGTGTGGTTaGCCTGGCCCATCCCCTCAC +
Preference number: 4 (lower is better)
Translates to: ISSPSSKQRSLYLPICVFPPWCG*PGPSPH
Trigger: GTGAGGGGATGGGCCAGGTCAACCACACCATGGAGG...AAAGACACAGATGGGAAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR GCA 90 bp ACAGATAAATGGATGTGGGTGTCCTCTTGCCTCAGAACACCCATACAATACCACGACGCTCCCACCTGCTaGCCAGGGGCATCCACGTGG +
Preference number: 4 (lower is better)
Translates to: TDKWMWVSSCLRTPIQYHDAPTC*PGASTW
Trigger: CCACGTGGATGCCCCTGGGCAGCAGGTGGGAGCGTC...GTGGTATTGTATGGGTGTTCTGAGGCAAGAGGACACCCACATCCATTTATCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR GCA 90 bp GCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGGGCTATGTTCCAGAAGAGCTaGAGGTTGGCCTGGTTCACC +
Preference number: 4 (lower is better)
Translates to: AHYPPSSNLTSARSRGWAMFQKS*RLAWFT
Trigger: GGTGAACCAGGCCAACCTGCAGCTCTTCTGGAACAT...AGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR GCA 90 bp TCCAAAGGGATGGGTAATCATGAAGTTCTCAGGGGCTACACACAGCATACACAGGTGCGAGGCGGGTCATaGTGGCTGAGGGCACTGCTC +
Preference number: 4 (lower is better)
Translates to: SKGMGNHEVLRGYTQHTQVRGGS*WLRALL
Trigger: GAGCAGTGCCCTCAGCCAGCATGACCCGCCTCGCAC...CTGTGTATGCTGTGTGTAGCCCCTGAGAACTTCATGATTACCCATCCCTTTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
CDS-3UTR CCA 90 bp AGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACTACCCACCAGGGGCATCCACGTaGCACACCACAAAGTGTTTG +
Preference number: 4 (lower is better)
Translates to: RLPTGLTPTHIRALAHYPPGAST*HTTKCL
Trigger: CAAACACTTTGTGGTGTGCCACGTGGATGCCCCTGG...TGGGTAGTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GGAGTGTGTAAGGCGAGCCCCTCACACCATCTAAGACTGTTGTGCTGTGCTGTCCCAGGGGCATCCACGTaGCACACCACAAAGTGTTTG +
Preference number: 4 (lower is better)
Translates to: GVCKASPSHHLRLLCCAVPGAST*HTTKCL
Trigger: CAAACACTTTGTGGTGTGCCACGTGGATGCCCCTGG...GACAGCACAGCACAACAGTCTTAGATGGTGTGAGGGGCTCGCCTTACACACTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp AGTACAGTGTCTGGTAAAGTGCTGGTCAAGCCAGAGAGCTTGGTGGCAGCCCAGCCAGGGGCATCCACGTaGCACACCACAAAGTGTTTG +
Preference number: 4 (lower is better)
Translates to: STVSGKVLVKPESLVAAQPGAST*HTTKCL
Trigger: CAAACACTTTGTGGTGTGCCACGTGGATGCCCCTGG...CTGGGCTGCCACCAAGCTCTCTGGCTTGACCAGCACTTTACCAGACACTGTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160915.8
CDS-3UTR CCA 90 bp GCCCCCATGTCAGGGTTCTCCATATTCTTCAGCCTGGCTGGCCTTACACCACCTTTCACCAGCTCCTCCTaGCTGAAGAGATGGGAGAGT +
Preference number: 4 (lower is better)
Translates to: APMSGFSIFFSLAGLTPPFTSSS*LKRWES
Trigger: ACTCTCCCATCTCTTCAGCCAGGAGGAGCTGGTGAA...AGGTGGTGTAAGGCCAGCCAGGCTGAAGAATATGGAGAACCCTGACATGGGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GCCCCCATGTCAGGGTTCTCCATATTCTTCAGCCTGGCTGGCCTTACACCACCTAGCTGCAGGTTGGCCTaGTTCACCACGTTTGAGATC +
Preference number: 4 (lower is better)
Translates to: APMSGFSIFFSLAGLTPPSCRLA*FTTFEI
Trigger: GATCTCAAACGTGGTGAACCAGGCCAACCTGCAGCT...AGGTGGTGTAAGGCCAGCCAGGCTGAAGAATATGGAGAACCCTGACATGGGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GGTCCAAGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACAGAAGAGCTGCAGGTTaGCCTGGTTCACCACGTTTG +
Preference number: 4 (lower is better)
Translates to: GPRLPTGLTPTHIRALAHRRAAG*PGSPRL
Trigger: CAAACGTGGTGAACCAGGCCAACCTGCAGCTCTTCT...GTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCTTGGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp AGTGTCTTGGCATTGGGCACCGTCCCAGGTCGGTTAATATCAAGGTCTCTGCGGCCTGTGGGAGACAGATaGCACTGGACACTTCCAGTC +
Preference number: 4 (lower is better)
Translates to: SVLALGTVPGRLISRSLRPVGDR*HWTLPV
Trigger: GACTGGAAGTGTCCAGTGCCATCTGTCTCCCACAGG...CCGCAGAGACCTTGATATTAACCGACCTGGGACGGTGCCCAATGCCAAGACACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
3UTR CAA 72 bp ACTACCAGCATCACTGGGCAGCGGAGTGTCTTGGCATaGGGCACCGTCCCAGGTCGGTTAATATCAAGGTCT +
Preference number: 4 (lower is better)
Translates to: TTSITGQRSVLA*GTVPGRLISRS
Trigger: AGACCTTGATATTAACCGACCTGGGACGGTGCCCAATGCCAAGACACTCCGCTGCCCAGTGATGCTGGTAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000160915.8
ENSMUST00000166358.8
CDS-3UTR TCA 90 bp ATGGCTTACAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAATGGATGTGGGCCACATCATGGTAGGTaGGGATGGCTGGGCGGTTCC +
Preference number: 4 (lower is better)
Translates to: MAYSYRKGRHVPQINGCGPHHGR*GWLGGS
Trigger: GGAACCGCCCAGCCATCCTCACCTACCATGATGTGG...CCCACATCCATTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTGTAAGCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp TTGATGCAAGGGTTACAGGAAAGGGACACTCTTAAGGTCCAAGGCTGCCCACTGCCAGCTCCTCCTGGCTaGAGAGATGGGAGAGTACAG +
Preference number: 4 (lower is better)
Translates to: LMQGLQERDTLKVQGCPLPAPPG*RDGRVQ
Trigger: CTGTACTCTCCCATCTCTTCAGCCAGGAGGAGCTGG...CAGTGGGCAGCCTTGGACCTTAAGAGTGTCCCTTTCCTGTAACCCTTGCATCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR GCA 90 bp GCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGGGCTCAGTGTCTGGTAAAGTaGTGGTCAAGCCAGAGAGCT +
Preference number: 4 (lower is better)
Translates to: AHYPPSSNLTSARSRGWAQCLVK*WSSQRA
Trigger: AGCTCTCTGGCTTGACCAGCACTTTACCAGACACTG...AGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR GCA 90 bp GGTTACAGGAAAGGGACACTCTTAAGGTCCAAGGCTGCCCACTGGTCTGACTCCATGTTCCAGAAGAGCTaGAGGTTGGCCTGGTTCACC +
Preference number: 4 (lower is better)
Translates to: GYRKGTLLRSKAAHWSDSMFQKS*RLAWFT
Trigger: GGTGAACCAGGCCAACCTGCAGCTCTTCTGGAACAT...GGAGTCAGACCAGTGGGCAGCCTTGGACCTTAAGAGTGTCCCTTTCCTGTAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR GCA 90 bp ACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGGGCTGGGCTTTTCGGTCCTTCAAGTGTaGAATGTAGCCCATGCCTTG +
Preference number: 4 (lower is better)
Translates to: THHLQTSHLPDPGAGLGFSVLQV*NVAHAL
Trigger: CAAGGCATGGGCTACATTGCACACTTGAAGGACCGA...AAAGCCCAGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000162578.8
CDS-3UTR CCA 90 bp ACTGGACTCCAGAGCAGTCTAGAAATGGCTTACAGTTACAGAAAGGGGCGGCATGCCATGGTCACGTCGTaGAGCAGAAGCCCTGTCAGC +
Preference number: 4 (lower is better)
Translates to: TGLQSSLEMAYSYRKGRHAMVTS*SRSPVS
Trigger: GCTGACAGGGCTTCTGCTCCACGACGTGACCATGGC...ATGCCGCCCCTTTCTGTAACTGTAAGCCATTTCTAGACTGCTCTGGAGTCCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000166358.8
CDS-3UTR CCA 90 bp GCCCCCATGTCAGGGTTCTCCATATTCTTCAGCCTGGCTGGCCTTACACCACCTTGTCTGGTAAAGTGCTaGTCAAGCCAGAGAGCTTGG +
Preference number: 4 (lower is better)
Translates to: APMSGFSIFFSLAGLTPPCLVKC*SSQRAW
Trigger: CCAAGCTCTCTGGCTTGACCAGCACTTTACCAGACA...AGGTGGTGTAAGGCCAGCCAGGCTGAAGAATATGGAGAACCCTGACATGGGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp AGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACTACCCACTCAGTCAGCTTCCCTaGTTGTGTCACCTGAGGAAG +
Preference number: 4 (lower is better)
Translates to: RLPTGLTPTHIRALAHYPLSQLP*LCHLRK
Trigger: CTTCCTCAGGTGACACAACCAGGGAAGCTGACTGAG...TGGGTAGTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
3UTR CAA 72 bp GTGTGTAAGGCGAGCCCCTCACACCATCTAAGACTGTaGTGCTGTGCTGTCCCAAGGTGGATCCCCTCATTT +
Preference number: 4 (lower is better)
Translates to: VCKASPSHHLRL*CCAVPRWIPSF
Trigger: AAATGAGGGGATCCACCTTGGGACAGCACAGCACAACAGTCTTAGATGGTGTGAGGGGCTCGCCTTACACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
ENSMUST00000166358.8
3UTR CAA 72 bp GCCATCTTCAGGAAGGTCGTAGTGGTTGGGTCCAGTTaGGAGTTACACTCAACCTGGGAACAAGGAGCCAGC +
Preference number: 4 (lower is better)
Translates to: AIFRKVVVVGSS*ELHSTWEQGAS
Trigger: GCTGGCTCCTTGTTCCCAGGTTGAGTGTAACTCCAAACTGGACCCAACCACTACGACCTTCCTGAAGATGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160915.8
3UTR CAA 72 bp GCCATCTTCAGGAAGGTCGTAGTGGTTGGGTCCAGTTaGGAGTTACACTCAACCACCCCTTCCTCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: AIFRKVVVVGSS*ELHSTTPSSAG
Trigger: ACCTGCTGAGGAAGGGGTGGTTGAGTGTAACTCCAAACTGGACCCAACCACTACGACCTTCCTGAAGATGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
CDS-3UTR TCA 90 bp GAGACAGGAGTGTGTAAGGCGAGCCCCTCACACCATCTAAGACTGTTGTGCTGTCCTGGTTGTGTCACCTaGGGAAGACCACCAGAATCT +
Preference number: 4 (lower is better)
Translates to: ETGVCKASPSHHLRLLCCPGCVT*GRPPES
Trigger: AGATTCTGGTGGTCTTCCTCAGGTGACACAACCAGG...ACAGCACAACAGTCTTAGATGGTGTGAGGGGCTCGCCTTACACACTCCTGTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR GCA 90 bp ATGGCTGTCTGTCTAGAGCGCCCTCTTGTGGCTACCATCCTCATGACTGTCACTATGTTCCAGAAGAGCTaGAGGTTGGCCTGGTTCACC +
Preference number: 4 (lower is better)
Translates to: MAVCLERPLVATILMTVTMFQKS*RLAWFT
Trigger: GGTGAACCAGGCCAACCTGCAGCTCTTCTGGAACAT...AGTGACAGTCATGAGGATGGTAGCCACAAGAGGGCGCTCTAGACAGACAGCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp CCCAAGGGCCAGGCAATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTTCCAGCCTTTGCCGTTaGGGTCAATGTTCATCAACA +
Preference number: 4 (lower is better)
Translates to: PKGQAISSPSSKQRSLYLSSLCR*GQCSST
Trigger: TGTTGATGAACATTGACCCCAACGGCAAAGGCTGGA...AAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGATTGCCTGGCCCTTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GCCCCCATGTCAGGGTTCTCCATATTCTTCAGCCTGGCTGGCCTTACACCACCTTCCAGCCTTTGCCGTTaGGGTCAATGTTCATCAACA +
Preference number: 4 (lower is better)
Translates to: APMSGFSIFFSLAGLTPPSSLCR*GQCSST
Trigger: TGTTGATGAACATTGACCCCAACGGCAAAGGCTGGA...AGGTGGTGTAAGGCCAGCCAGGCTGAAGAATATGGAGAACCCTGACATGGGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp ATGGCTTACAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAATGGATGTGGGAGCCAGAGAGCTTGGTaGCAGCCCAGTCAATCCAGC +
Preference number: 4 (lower is better)
Translates to: MAYSYRKGRHVPQINGCGSQRAW*QPSQSS
Trigger: GCTGGATTGACTGGGCTGCCACCAAGCTCTCTGGCT...CCCACATCCATTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTGTAAGCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp AATGGCTGTCTGTCTAGAGCGCCCTCTTGTGGCTACCATCCTCATGACTGTCACAGAAGAGCTGCAGGTTaGCCTGGTTCACCACGTTTG +
Preference number: 4 (lower is better)
Translates to: NGCLSRAPSCGYHPHDCHRRAAG*PGSPRL
Trigger: CAAACGTGGTGAACCAGGCCAACCTGCAGCTCTTCT...GTGACAGTCATGAGGATGGTAGCCACAAGAGGGCGCTCTAGACAGACAGCCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GCCCCCATGTCAGGGTTCTCCATATTCTTCAGCCTGGCTGGCCTTACACCACCTGAAGGTCGTAGTGGTTaGGTCCAGTTTGGAGTTACA +
Preference number: 4 (lower is better)
Translates to: APMSGFSIFFSLAGLTPPEGRSG*VQFGVT
Trigger: TGTAACTCCAAACTGGACCCAACCACTACGACCTTC...AGGTGGTGTAAGGCCAGCCAGGCTGAAGAATATGGAGAACCCTGACATGGGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GAGACAGGAGTGTGTAAGGCGAGCCCCTCACACCATCTAAGACTGTTGTGCTGTCTCAGTCAGCTTCCCTaGTTGTGTCACCTGAGGAAG +
Preference number: 4 (lower is better)
Translates to: ETGVCKASPSHHLRLLCCLSQLP*LCHLRK
Trigger: CTTCCTCAGGTGACACAACCAGGGAAGCTGACTGAG...ACAGCACAACAGTCTTAGATGGTGTGAGGGGCTCGCCTTACACACTCCTGTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR TCA 90 bp TCCAATACTTGGAGTGCTATCTACAGTAAGGGATTAGTTCTACCACCTCTAAACCCCCTGAGGGAACTGTaGCGCTCCCACCTGCTGCCC +
Preference number: 4 (lower is better)
Translates to: SNTWSAIYSKGLVLPPLNPLREL*RSHLLP
Trigger: GGGCAGCAGGTGGGAGCGTCACAGTTCCCTCAGGGG...GTTTAGAGGTGGTAGAACTAATCCCTTACTGTAGATAGCACTCCAAGTATTGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp AGCTTTAGCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCCTGGTTGTGTCACCTaGGGAAGACCACCAGAATCT +
Preference number: 4 (lower is better)
Translates to: SFSSLPTIFKPHICQIQGPGCVT*GRPPES
Trigger: AGATTCTGGTGGTCTTCCTCAGGTGACACAACCAGG...CCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGCTAAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR TCA 90 bp GGGATTAGTTCTACCACCTCTAAACAGTCACATTCAGTATTCACGGAAGCACGTCCTCCATGGTGTGGTTaGCCTGGCCCATCCCCTCAC +
Preference number: 4 (lower is better)
Translates to: GISSTTSKQSHSVFTEARPPWCG*PGPSPH
Trigger: GTGAGGGGATGGGCCAGGTCAACCACACCATGGAGG...ACGTGCTTCCGTGAATACTGAATGTGACTGTTTAGAGGTGGTAGAACTAATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR GCA 90 bp GGAGTGTGTAAGGCGAGCCCCTCACACCATCTAAGACTGTTGTGCTGTGCTGTCAAGACCACCAGAATCTaGCATCTTCAGGAAGGTCGT +
Preference number: 4 (lower is better)
Translates to: GVCKASPSHHLRLLCCAVKTTRI*HLQEGR
Trigger: ACGACCTTCCTGAAGATGGCAGATTCTGGTGGTCTT...GACAGCACAGCACAACAGTCTTAGATGGTGTGAGGGGCTCGCCTTACACACTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GGGATTAGTTCTACCACCTCTAAACAGTCACATTCAGTATTCACGGAAGCACGTCTGGGCGGTTCCCTTTaGGAGAGCCCCGGATCACCA +
Preference number: 4 (lower is better)
Translates to: GISSTTSKQSHSVFTEARLGGSL*ESPGSP
Trigger: TGGTGATCCGGGGCTCTCCCAAAGGGAACCGCCCAG...ACGTGCTTCCGTGAATACTGAATGTGACTGTTTAGAGGTGGTAGAACTAATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GGCAATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTCCCATCTGTGTTCCTGGCTGAAGAGATaGGAGAGTACAGTGTCTGGT +
Preference number: 4 (lower is better)
Translates to: GNLQPLQQAEVIVSSHLCSWLKR*ESTVSG
Trigger: ACCAGACACTGTACTCTCCCATCTCTTCAGCCAGGA...ACACAGATGGGAAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGATTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GGAGTGTGTAAGGCGAGCCCCTCACACCATCTAAGACTGTTGTGCTGTGCTGTCGAAGGTCGTAGTGGTTaGGTCCAGTTTGGAGTTACA +
Preference number: 4 (lower is better)
Translates to: GVCKASPSHHLRLLCCAVEGRSG*VQFGVT
Trigger: TGTAACTCCAAACTGGACCCAACCACTACGACCTTC...GACAGCACAGCACAACAGTCTTAGATGGTGTGAGGGGCTCGCCTTACACACTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp TCCAAAGGGATGGGTAATCATGAAGTTCTCAGGGGCTACACACAGCATACACAGCTGGTTCACCACGTTTaGGATCTGCTGCCGGTAGCT +
Preference number: 4 (lower is better)
Translates to: SKGMGNHEVLRGYTQHTQLVHHV*DLLPVA
Trigger: AGCTACCGGCAGCAGATCTCAAACGTGGTGAACCAG...CTGTGTATGCTGTGTGTAGCCCCTGAGAACTTCATGATTACCCATCCCTTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR GCA 90 bp AGCTTTAGCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCAGTGTCTGGTAAAGTaGTGGTCAAGCCAGAGAGCT +
Preference number: 4 (lower is better)
Translates to: SFSSLPTIFKPHICQIQGQCLVK*WSSQRA
Trigger: AGCTCTCTGGCTTGACCAGCACTTTACCAGACACTG...CCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGCTAAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp CAGTCTAGAAATGGCTTACAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAAGGTTATCCATCTCAGTaGCATCCTGGCCGCGGAGCA +
Preference number: 4 (lower is better)
Translates to: QSRNGLQLQKGAACATDKGYPSQ*HPGRGA
Trigger: TGCTCCGCGGCCAGGATGCCACTGAGATGGATAACC...TTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTGTAAGCCATTTCTAGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000166358.8
CDS-3UTR CCA 90 bp AGCTTTAGCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGTGTCTGGTAAAGTGCTaGTCAAGCCAGAGAGCTTGG +
Preference number: 4 (lower is better)
Translates to: SFSSLPTIFKPHICQIQGCLVKC*SSQRAW
Trigger: CCAAGCTCTCTGGCTTGACCAGCACTTTACCAGACA...CCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGCTAAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp AGCTTTAGCTCACTACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGTCCTGGCTGAAGAGATaGGAGAGTACAGTGTCTGGT +
Preference number: 4 (lower is better)
Translates to: SFSSLPTIFKPHICQIQGSWLKR*ESTVSG
Trigger: ACCAGACACTGTACTCTCCCATCTCTTCAGCCAGGA...CCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGTAGTGAGCTAAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp CATCTGTGTCTTTCTAACAAGCTCACTTCTCAAGTATTGTCTGTGACACACTGGGGCAGCGGAGTGTCTTaGCATTGGGCACCGTCCCAG +
Preference number: 4 (lower is better)
Translates to: HLCLSNKLTSQVLSVTHWGSGVS*HWAPSQ
Trigger: CTGGGACGGTGCCCAATGCCAAGACACTCCGCTGCC...CCAGTGTGTCACAGACAATACTTGAGAAGTGAGCTTGTTAGAAAGACACAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp ATGGCTGTCTGTCTAGAGCGCCCTCTTGTGGCTACCATCCTCATGACTGTCACTGAAGGTCGTAGTGGTTaGGTCCAGTTTGGAGTTACA +
Preference number: 4 (lower is better)
Translates to: MAVCLERPLVATILMTVTEGRSG*VQFGVT
Trigger: TGTAACTCCAAACTGGACCCAACCACTACGACCTTC...AGTGACAGTCATGAGGATGGTAGCCACAAGAGGGCGCTCTAGACAGACAGCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp CAGTCTAGAAATGGCTTACAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAACTGGTTCACCACGTTTaGGATCTGCTGCCGGTAGCT +
Preference number: 4 (lower is better)
Translates to: QSRNGLQLQKGAACATDKLVHHV*DLLPVA
Trigger: AGCTACCGGCAGCAGATCTCAAACGTGGTGAACCAG...TTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTGTAAGCCATTTCTAGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp ATGGCTTACAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAATGGATGTGGGTCCTGGCTGAAGAGATaGGAGAGTACAGTGTCTGGT +
Preference number: 4 (lower is better)
Translates to: MAYSYRKGRHVPQINGCGSWLKR*ESTVSG
Trigger: ACCAGACACTGTACTCTCCCATCTCTTCAGCCAGGA...CCCACATCCATTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTGTAAGCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp GGGATTAGTTCTACCACCTCTAAACAGTCACATTCAGTATTCACGGAAGCACGTATGGTGTGGTTGACCTaGCCCATCCCCTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: GISSTTSKQSHSVFTEARMVWLT*PIPSLL
Trigger: CAGCAGTGAGGGGATGGGCCAGGTCAACCACACCAT...ACGTGCTTCCGTGAATACTGAATGTGACTGTTTAGAGGTGGTAGAACTAATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp ATGGCTTACAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAATGGATGTGGGGATGTCATGTTCCTGTaGGAGACAGATGGCACTGGA +
Preference number: 4 (lower is better)
Translates to: MAYSYRKGRHVPQINGCGDVMFL*ETDGTG
Trigger: TCCAGTGCCATCTGTCTCCCACAGGAACATGACATC...CCCACATCCATTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTGTAAGCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
CDS-3UTR TCA 90 bp TCCAAAGGGATGGGTAATCATGAAGTTCTCAGGGGCTACACACAGCATACACAGAGCACAGCTTGTGATTaGGACCCACATCATGGTAGG +
Preference number: 4 (lower is better)
Translates to: SKGMGNHEVLRGYTQHTQSTACD*DPHHGR
Trigger: CCTACCATGATGTGGGTCTCAATCACAAGCTGTGCT...CTGTGTATGCTGTGTGTAGCCCCTGAGAACTTCATGATTACCCATCCCTTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp CAGTCTAGAAATGGCTTACAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAACCTGGTTGTGTCACCTaGGGAAGACCACCAGAATCT +
Preference number: 4 (lower is better)
Translates to: QSRNGLQLQKGAACATDKPGCVT*GRPPES
Trigger: AGATTCTGGTGGTCTTCCTCAGGTGACACAACCAGG...TTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTGTAAGCCATTTCTAGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp GATATCTTAAGAACACAGCAAAAAGATGTCCAATACTTGGAGTGCTATCTACAGGCGGGTCATGCTGGCTaGGGGCACTGCTCCTCCACT +
Preference number: 4 (lower is better)
Translates to: DILRTQQKDVQYLECYLQAGHAG*GHCSST
Trigger: AGTGGAGGAGCAGTGCCCTCAGCCAGCATGACCCGC...CTGTAGATAGCACTCCAAGTATTGGACATCTTTTTGCTGTGTTCTTAAGATATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
CDS-3UTR CCA 90 bp AAGATGTCCAATACTTGGAGTGCTATCTACAGTAAGGGATTAGTTCTACCACCTAGCCCTGTCAGCAGTTaGAGCCTGTGTCCCAGCACC +
Preference number: 4 (lower is better)
Translates to: KMSNTWSAIYSKGLVLPPSPVSS*SLCPST
Trigger: GGTGCTGGGACACAGGCTCCAACTGCTGACAGGGCT...AGGTGGTAGAACTAATCCCTTACTGTAGATAGCACTCCAAGTATTGGACATCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000166358.8
CDS-3UTR CCA 90 bp ACTGGACTCCAGAGCAGTCTAGAAATGGCTTACAGTTACAGAAAGGGGCGGCATTCCAGCCTTTGCCGTTaGGGTCAATGTTCATCAACA +
Preference number: 4 (lower is better)
Translates to: TGLQSSLEMAYSYRKGRHSSLCR*GQCSST
Trigger: TGTTGATGAACATTGACCCCAACGGCAAAGGCTGGA...ATGCCGCCCCTTTCTGTAACTGTAAGCCATTTCTAGACTGCTCTGGAGTCCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp CAGTCTAGAAATGGCTTACAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAACTCAGTCAGCTTCCCTaGTTGTGTCACCTGAGGAAG +
Preference number: 4 (lower is better)
Translates to: QSRNGLQLQKGAACATDKLSQLP*LCHLRK
Trigger: CTTCCTCAGGTGACACAACCAGGGAAGCTGACTGAG...TTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTGTAAGCCATTTCTAGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR GCA 90 bp ACAGATAAATGGATGTGGGTGTCCTCTTGCCTCAGAACACCCATACAATACCACCAGTGTCTGGTAAAGTaGTGGTCAAGCCAGAGAGCT +
Preference number: 4 (lower is better)
Translates to: TDKWMWVSSCLRTPIQYHQCLVK*WSSQRA
Trigger: AGCTCTCTGGCTTGACCAGCACTTTACCAGACACTG...GTGGTATTGTATGGGTGTTCTGAGGCAAGAGGACACCCACATCCATTTATCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR GCA 90 bp ACAGATAAATGGATGTGGGTGTCCTCTTGCCTCAGAACACCCATACAATACCACTCGGTCCTTCAAGTGTaGAATGTAGCCCATGCCTTG +
Preference number: 4 (lower is better)
Translates to: TDKWMWVSSCLRTPIQYHSVLQV*NVAHAL
Trigger: CAAGGCATGGGCTACATTGCACACTTGAAGGACCGA...GTGGTATTGTATGGGTGTTCTGAGGCAAGAGGACACCCACATCCATTTATCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
CDS-3UTR CCA 90 bp GGGATTAGTTCTACCACCTCTAAACAGTCACATTCAGTATTCACGGAAGCACGTAGCTGCAGGTTGGCCTaGTTCACCACGTTTGAGATC +
Preference number: 4 (lower is better)
Translates to: GISSTTSKQSHSVFTEARSCRLA*FTTFEI
Trigger: GATCTCAAACGTGGTGAACCAGGCCAACCTGCAGCT...ACGTGCTTCCGTGAATACTGAATGTGACTGTTTAGAGGTGGTAGAACTAATCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp AAGATGTCCAATACTTGGAGTGCTATCTACAGTAAGGGATTAGTTCTACCACCTGACTACCAGCATCACTaGGCAGCGGAGTGTCTTGGC +
Preference number: 4 (lower is better)
Translates to: KMSNTWSAIYSKGLVLPPDYQHH*AAECLG
Trigger: GCCAAGACACTCCGCTGCCCAGTGATGCTGGTAGTC...AGGTGGTAGAACTAATCCCTTACTGTAGATAGCACTCCAAGTATTGGACATCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp AAGAGAAGACAACTACCAATGGGAAACCACATACAGGAAGGAGGACCTGATATATTCACCAGCTCCTCCTaGCTGAAGAGATGGGAGAGT +
Preference number: 4 (lower is better)
Translates to: KRRQLPMGNHIQEGGPDIFTSSS*LKRWES
Trigger: ACTCTCCCATCTCTTCAGCCAGGAGGAGCTGGTGAA...TATATCAGGTCCTCCTTCCTGTATGTGGTTTCCCATTGGTAGTTGTCTTCTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
3UTR CAA 72 bp CATCTGTGTCTTTCTAACAAGCTCACTTCTCAAGTATaGTCTGTGACACACTGGCCCAAGTTGACCAGGGCA +
Preference number: 4 (lower is better)
Translates to: HLCLSNKLTSQV*SVTHWPKLTRA
Trigger: TGCCCTGGTCAACTTGGGCCAGTGTGTCACAGACAATACTTGAGAAGTGAGCTTGTTAGAAAGACACAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000166358.8
CDS-3UTR CCA 90 bp AAGAGAAGACAACTACCAATGGGAAACCACATACAGGAAGGAGGACCTGATATATGTCTGGTAAAGTGCTaGTCAAGCCAGAGAGCTTGG +
Preference number: 4 (lower is better)
Translates to: KRRQLPMGNHIQEGGPDICLVKC*SSQRAW
Trigger: CCAAGCTCTCTGGCTTGACCAGCACTTTACCAGACA...TATATCAGGTCCTCCTTCCTGTATGTGGTTTCCCATTGGTAGTTGTCTTCTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp AAGATGTCCAATACTTGGAGTGCTATCTACAGTAAGGGATTAGTTCTACCACCTTTCACCAGCTCCTCCTaGCTGAAGAGATGGGAGAGT +
Preference number: 4 (lower is better)
Translates to: KMSNTWSAIYSKGLVLPPFTSSS*LKRWES
Trigger: ACTCTCCCATCTCTTCAGCCAGGAGGAGCTGGTGAA...AGGTGGTAGAACTAATCCCTTACTGTAGATAGCACTCCAAGTATTGGACATCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CCA 90 bp TCCAATACTTGGAGTGCTATCTACAGTAAGGGATTAGTTCTACCACCTCTAAACAGCTGCAGGTTGGCCTaGTTCACCACGTTTGAGATC +
Preference number: 4 (lower is better)
Translates to: SNTWSAIYSKGLVLPPLNSCRLA*FTTFEI
Trigger: GATCTCAAACGTGGTGAACCAGGCCAACCTGCAGCT...GTTTAGAGGTGGTAGAACTAATCCCTTACTGTAGATAGCACTCCAAGTATTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR TCA 90 bp GATATCTTAAGAACACAGCAAAAAGATGTCCAATACTTGGAGTGCTATCTACAGCTGGTTCACCACGTTTaGGATCTGCTGCCGGTAGCT +
Preference number: 4 (lower is better)
Translates to: DILRTQQKDVQYLECYLQLVHHV*DLLPVA
Trigger: AGCTACCGGCAGCAGATCTCAAACGTGGTGAACCAG...CTGTAGATAGCACTCCAAGTATTGGACATCTTTTTGCTGTGTTCTTAAGATATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR GCA 90 bp AAGAGAAGACAACTACCAATGGGAAACCACATACAGGAAGGAGGACCTGATATAAAGACCACCAGAATCTaGCATCTTCAGGAAGGTCGT +
Preference number: 4 (lower is better)
Translates to: KRRQLPMGNHIQEGGPDIKTTRI*HLQEGR
Trigger: ACGACCTTCCTGAAGATGGCAGATTCTGGTGGTCTT...TATATCAGGTCCTCCTTCCTGTATGTGGTTTCCCATTGGTAGTTGTCTTCTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR GCA 90 bp TCCAATACTTGGAGTGCTATCTACAGTAAGGGATTAGTTCTACCACCTCTAAACTCGGTCCTTCAAGTGTaGAATGTAGCCCATGCCTTG +
Preference number: 4 (lower is better)
Translates to: SNTWSAIYSKGLVLPPLNSVLQV*NVAHAL
Trigger: CAAGGCATGGGCTACATTGCACACTTGAAGGACCGA...GTTTAGAGGTGGTAGAACTAATCCCTTACTGTAGATAGCACTCCAAGTATTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
CDS-3UTR GCA 90 bp TCCAATACTTGGAGTGCTATCTACAGTAAGGGATTAGTTCTACCACCTCTAAACAAGACCACCAGAATCTaGCATCTTCAGGAAGGTCGT +
Preference number: 4 (lower is better)
Translates to: SNTWSAIYSKGLVLPPLNKTTRI*HLQEGR
Trigger: ACGACCTTCCTGAAGATGGCAGATTCTGGTGGTCTT...GTTTAGAGGTGGTAGAACTAATCCCTTACTGTAGATAGCACTCCAAGTATTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp CACCTGTCCTGCCCAGAGAGCACCAGGAAAATGGCTGTCTGTCTAGAGCGCCCTGCTGGGCGGTTCCCTTaGGGAGAGCCCCGGATCACC +
Preference number: 5 (lower is better)
Translates to: HLSCPESTRKMAVCLERPAGRFP*GEPRIT
Trigger: GGTGATCCGGGGCTCTCCCAAAGGGAACCGCCCAGC...AGGGCGCTCTAGACAGACAGCCATTTTCCTGGTGCTCTCTGGGCAGGACAGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS CCA 90 bp TCCTCAGGAAATCGCAGCTCCTGCAGCCCTGCCATGGTCACGTCGTaGAGCAGAAGCCCTGTCAGCAGTTGGAGCCTGTGTCCCAGCACC +
Preference number: 5 (lower is better)
Translates to: SSGNRSSCSPAMVTS*SRSPVSSWSLCPST
Trigger: GGTGCTGGGACACAGGCTCCAACTGCTGACAGGGCTTCTGCTCCACGACGTGACCATGGCAGGGCTGCAGGAGCTGCGATTTCCTGAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000166358.8
CDS CCA 90 bp GCAGGGGCTTCTCCTCAGGAAATCGCAGCTCCTGCAGCCCTGCCATaGTCACGTCGTGGAGCAGAAGCCCTGTCAGCAGTTGGAGCCTGT +
Preference number: 5 (lower is better)
Translates to: AGASPQEIAAPAALP*SRRGAEALSAVGAC
Trigger: ACAGGCTCCAACTGCTGACAGGGCTTCTGCTCCACGACGTGACCATGGCAGGGCTGCAGGAGCTGCGATTTCCTGAGGAGAAGCCCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000166358.8
CDS-3UTR CAA 90 bp TCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGAAAATGGGGCAGCGGAGTGTCTaGGCATTGGGCACCGTCCCA +
Preference number: 5 (lower is better)
Translates to: SAWLALHHLSCPESTRKMGQRSV*ALGTVP
Trigger: TGGGACGGTGCCCAATGCCAAGACACTCCGCTGCCC...CATTTTCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp GGTCCAAGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACGGGCAGCGGAGTGTCTaGGCATTGGGCACCGTCCCA +
Preference number: 5 (lower is better)
Translates to: GPRLPTGLTPTHIRALAHGQRSV*ALGTVP
Trigger: TGGGACGGTGCCCAATGCCAAGACACTCCGCTGCCC...GTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCTTGGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp ATGGCTGTCTGTCTAGAGCGCCCTCTTGTGGCTACCATCCTCATGACTGTCACTGCTGGGCGGTTCCCTTaGGGAGAGCCCCGGATCACC +
Preference number: 5 (lower is better)
Translates to: MAVCLERPLVATILMTVTAGRFP*GEPRIT
Trigger: GGTGATCCGGGGCTCTCCCAAAGGGAACCGCCCAGC...AGTGACAGTCATGAGGATGGTAGCCACAAGAGGGCGCTCTAGACAGACAGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS CCA 90 bp ACAATTGAGAGGAAGGCGTCAGGGTTATCCATCTCAGTGGCATCCTaGCCGCGGAGCAGGGGCTTCTCCTCAGGAAATCGCAGCTCCTGC +
Preference number: 5 (lower is better)
Translates to: TIERKASGLSISVAS*PRSRGFSSGNRSSC
Trigger: GCAGGAGCTGCGATTTCCTGAGGAGAAGCCCCTGCTCCGCGGCCAGGATGCCACTGAGATGGATAACCCTGACGCCTTCCTCTCAATTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000160964.8
ENSMUST00000166358.8
CDS CCA 90 bp CTGTGTCCACAATTGAGAGGAAGGCGTCAGGGTTATCCATCTCAGTaGCATCCTGGCCGCGGAGCAGGGGCTTCTCCTCAGGAAATCGCA +
Preference number: 5 (lower is better)
Translates to: LCPQLRGRRQGYPSQ*HPGRGAGASPQEIA
Trigger: TGCGATTTCCTGAGGAGAAGCCCCTGCTCCGCGGCCAGGATGCCACTGAGATGGATAACCCTGACGCCTTCCTCTCAATTGTGGACACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000160964.8
ENSMUST00000166358.8
CDS-3UTR CAA 90 bp AGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACTACCCAAAGCCCTGTCAGCAGTaGGAGCCTGTGTCCCAGCAC +
Preference number: 5 (lower is better)
Translates to: RLPTGLTPTHIRALAHYPKPCQQ*EPVSQH
Trigger: GTGCTGGGACACAGGCTCCAACTGCTGACAGGGCTT...TGGGTAGTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000166358.8
CDS-3UTR CAA 90 bp TTCATCAACACCAGCCCCTCCACCAGGTCAGGGAAGATGAGTGCAAACTTGGCCAAGCCCTGTCAGCAGTaGGAGCCTGTGTCCCAGCAC +
Preference number: 5 (lower is better)
Translates to: FINTSPSTRSGKMSANLAKPCQQ*EPVSQH
Trigger: GTGCTGGGACACAGGCTCCAACTGCTGACAGGGCTT...GGCCAAGTTTGCACTCATCTTCCCTGACCTGGTGGAGGGGCTGGTGTTGATGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
CDS-3UTR CAA 90 bp GCATGTGCCACAGATAAATGGATGTGGGTGTCCTCTTGCCTCAGAACACCCATAGCTGGGCGGTTCCCTTaGGGAGAGCCCCGGATCACC +
Preference number: 5 (lower is better)
Translates to: ACATDKWMWVSSCLRTPIAGRFP*GEPRIT
Trigger: GGTGATCCGGGGCTCTCCCAAAGGGAACCGCCCAGC...TATGGGTGTTCTGAGGCAAGAGGACACCCACATCCATTTATCTGTGGCACATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp ATTCTTCAGCCTGGCTGGCCTTACACCACCTGTCCTGCCCAGAGAGCACCAGGACAGAAGAGCTGCAGGTaGGCCTGGTTCACCACGTTT +
Preference number: 5 (lower is better)
Translates to: ILQPGWPYTTCPAQRAPGQKSCR*AWFTTF
Trigger: AAACGTGGTGAACCAGGCCAACCTGCAGCTCTTCTG...TCCTGGTGCTCTCTGGGCAGGACAGGTGGTGTAAGGCCAGCCAGGCTGAAGAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp TTGATGCAAGGGTTACAGGAAAGGGACACTCTTAAGGTCCAAGGCTGCCCACTGGGGCAGCGGAGTGTCTaGGCATTGGGCACCGTCCCA +
Preference number: 5 (lower is better)
Translates to: LMQGLQERDTLKVQGCPLGQRSV*ALGTVP
Trigger: TGGGACGGTGCCCAATGCCAAGACACTCCGCTGCCC...CAGTGGGCAGCCTTGGACCTTAAGAGTGTCCCTTTCCTGTAACCCTTGCATCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp AGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACTACCCAACCTCCATGGTGTGGTaGACCTGGCCCATCCCCTCA +
Preference number: 5 (lower is better)
Translates to: RLPTGLTPTHIRALAHYPTSMVW*TWPIPS
Trigger: TGAGGGGATGGGCCAGGTCAACCACACCATGGAGGT...TGGGTAGTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS TCA 90 bp GTGGGAGACAGATGGCACTGGACACTTCCAGTCTGTGTCCACAATTaGGAGGAAGGCGTCAGGGTTATCCATCTCAGTGGCATCCTGGCC +
Preference number: 5 (lower is better)
Translates to: VGDRWHWTLPVCVHN*EEGVRVIHLSGILA
Trigger: GGCCAGGATGCCACTGAGATGGATAACCCTGACGCCTTCCTCTCAATTGTGGACACAGACTGGAAGTGTCCAGTGCCATCTGTCTCCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
CDS-3UTR CAA 90 bp ACCCACCATCTTCAAACCTCACATCTGCCAGATCCAGGGGCTGGGCTGGGCTTTAGGTCTCTGCGGCTGTaGTACATGTTCCAGAAGAGC +
Preference number: 5 (lower is better)
Translates to: THHLQTSHLPDPGAGLGFRSLRL*YMFQKS
Trigger: GCTCTTCTGGAACATGTACAACAGCCGCAGAGACCT...AAAGCCCAGCCCAGCCCCTGGATCTGGCAGATGTGAGGTTTGAAGATGGTGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp GCCCCCATGTCAGGGTTCTCCATATTCTTCAGCCTGGCTGGCCTTACACCACCTAGGTCTCTGCGGCTGTaGTACATGTTCCAGAAGAGC +
Preference number: 5 (lower is better)
Translates to: APMSGFSIFFSLAGLTPPRSLRL*YMFQKS
Trigger: GCTCTTCTGGAACATGTACAACAGCCGCAGAGACCT...AGGTGGTGTAAGGCCAGCCAGGCTGAAGAATATGGAGAACCCTGACATGGGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp GGTTACAGGAAAGGGACACTCTTAAGGTCCAAGGCTGCCCACTGGTCTGACTCCAGTCAGCTTCCCTGGTaGTGTCACCTGAGGAAGACC +
Preference number: 5 (lower is better)
Translates to: GYRKGTLLRSKAAHWSDSSQLPW*CHLRKT
Trigger: GGTCTTCCTCAGGTGACACAACCAGGGAAGCTGACT...GGAGTCAGACCAGTGGGCAGCCTTGGACCTTAAGAGTGTCCCTTTCCTGTAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR CAA 90 bp AGTATTCAAGACCAGCCTGGGCTACAGAAAGATTGCTCAACCCTCCCCCAACCAACCTCCATGGTGTGGTaGACCTGGCCCATCCCCTCA +
Preference number: 5 (lower is better)
Translates to: SIQDQPGLQKDCSTLPQPTSMVW*TWPIPS
Trigger: TGAGGGGATGGGCCAGGTCAACCACACCATGGAGGT...TGGTTGGGGGAGGGTTGAGCAATCTTTCTGTAGCCCAGGCTGGTCTTGAATACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000073139.14
CDS-3UTR CAA 90 bp AATGGCTGTCTGTCTAGAGCGCCCTCTTGTGGCTACCATCCTCATGACTGTCACAGTCAGCTTCCCTGGTaGTGTCACCTGAGGAAGACC +
Preference number: 5 (lower is better)
Translates to: NGCLSRAPSCGYHPHDCHSQLPW*CHLRKT
Trigger: GGTCTTCCTCAGGTGACACAACCAGGGAAGCTGACT...GTGACAGTCATGAGGATGGTAGCCACAAGAGGGCGCTCTAGACAGACAGCCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
ENSMUST00000162578.8
CDS-3UTR CAA 90 bp ATCTCCAGCCCCTCCAGCAAGCAGAGGTCATTGTATCTTCCCATCTGTGTCTTTACCTCCATGGTGTGGTaGACCTGGCCCATCCCCTCA +
Preference number: 5 (lower is better)
Translates to: ISSPSSKQRSLYLPICVFTSMVW*TWPIPS
Trigger: TGAGGGGATGGGCCAGGTCAACCACACCATGGAGGT...AAAGACACAGATGGGAAGATACAATGACCTCTGCTTGCTGGAGGGGCTGGAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp AGGCTGCCCACTGGTCTGACTCCCACTCACATCAGAGCTTTAGCTCACTACCCAATCCAGCCTTTGCCGTaGGGGTCAATGTTCATCAAC +
Preference number: 5 (lower is better)
Translates to: RLPTGLTPTHIRALAHYPIQPLP*GSMFIN
Trigger: GTTGATGAACATTGACCCCAACGGCAAAGGCTGGAT...TGGGTAGTGAGCTAAAGCTCTGATGTGAGTGGGAGTCAGACCAGTGGGCAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp TGTGGGTGTCCTCTTGCCTCAGAACACCCATACAATACCACATACATCATCCCCAGTCAGCTTCCCTGGTaGTGTCACCTGAGGAAGACC +
Preference number: 5 (lower is better)
Translates to: CGCPLASEHPYNTTYIIPSQLPW*CHLRKT
Trigger: GGTCTTCCTCAGGTGACACAACCAGGGAAGCTGACT...GGGGATGATGTATGTGGTATTGTATGGGTGTTCTGAGGCAAGAGGACACCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp ACAGATAAATGGATGTGGGTGTCCTCTTGCCTCAGAACACCCATACAATACCACACCTCCATGGTGTGGTaGACCTGGCCCATCCCCTCA +
Preference number: 5 (lower is better)
Translates to: TDKWMWVSSCLRTPIQYHTSMVW*TWPIPS
Trigger: TGAGGGGATGGGCCAGGTCAACCACACCATGGAGGT...GTGGTATTGTATGGGTGTTCTGAGGCAAGAGGACACCCACATCCATTTATCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp TGTGGGTGTCCTCTTGCCTCAGAACACCCATACAATACCACATACATCATCCCCATCCAGCCTTTGCCGTaGGGGTCAATGTTCATCAAC +
Preference number: 5 (lower is better)
Translates to: CGCPLASEHPYNTTYIIPIQPLP*GSMFIN
Trigger: GTTGATGAACATTGACCCCAACGGCAAAGGCTGGAT...GGGGATGATGTATGTGGTATTGTATGGGTGTTCTGAGGCAAGAGGACACCCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp CAGTCTAGAAATGGCTTACAGTTACAGAAAGGGGCGGCATGTGCCACAGATAAACAGAAGAGCTGCAGGTaGGCCTGGTTCACCACGTTT +
Preference number: 5 (lower is better)
Translates to: QSRNGLQLQKGAACATDKQKSCR*AWFTTF
Trigger: AAACGTGGTGAACCAGGCCAACCTGCAGCTCTTCTG...TTTATCTGTGGCACATGCCGCCCCTTTCTGTAACTGTAAGCCATTTCTAGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp CATCTGTGTCTTTCTAACAAGCTCACTTCTCAAGTATTGTCTGTGACACACTGGCAGAAGAGCTGCAGGTaGGCCTGGTTCACCACGTTT +
Preference number: 5 (lower is better)
Translates to: HLCLSNKLTSQVLSVTHWQKSCR*AWFTTF
Trigger: AAACGTGGTGAACCAGGCCAACCTGCAGCTCTTCTG...CCAGTGTGTCACAGACAATACTTGAGAAGTGAGCTTGTTAGAAAGACACAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp AAGAGAAGACAACTACCAATGGGAAACCACATACAGGAAGGAGGACCTGATATAAGGTCTCTGCGGCTGTaGTACATGTTCCAGAAGAGC +
Preference number: 5 (lower is better)
Translates to: KRRQLPMGNHIQEGGPDIRSLRL*YMFQKS
Trigger: GCTCTTCTGGAACATGTACAACAGCCGCAGAGACCT...TATATCAGGTCCTCCTTCCTGTATGTGGTTTCCCATTGGTAGTTGTCTTCTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS-3UTR CAA 90 bp CATCTGTGTCTTTCTAACAAGCTCACTTCTCAAGTATTGTCTGTGACACACTGGATCCAGCCTTTGCCGTaGGGGTCAATGTTCATCAAC +
Preference number: 5 (lower is better)
Translates to: HLCLSNKLTSQVLSVTHWIQPLP*GSMFIN
Trigger: GTTGATGAACATTGACCCCAACGGCAAAGGCTGGAT...CCAGTGTGTCACAGACAATACTTGAGAAGTGAGCTTGTTAGAAAGACACAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000073139.14
ENSMUST00000080666.8
CDS CCA 72 bp GGGACGCGGTACGTGAGCGTGCGAGGCGGGTCATGCTaGCTGAGGGCATGTAGCCCATGCCTTGCAGGAAGT +
Preference number: 6 (lower is better)
Translates to: GTRYVSVRGGSC*LRACSPCLAGS
Trigger: ACTTCCTGCAAGGCATGGGCTACATGCCCTCAGCCAGCATGACCCGCCTCGCACGCTCACGTACCGCGTCCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080666.8
CDS GCA 72 bp CGGAGCAGGGGCTTCTCCTCAGGAAATCGCAGCTCCTaGAGCCCTGCCATGGTCACGTCGTGGAGCAGAAGC +
Preference number: 6 (lower is better)
Translates to: RSRGFSSGNRSS*SPAMVTSWSRS
Trigger: GCTTCTGCTCCACGACGTGACCATGGCAGGGCTGCAGGAGCTGCGATTTCCTGAGGAGAAGCCCCTGCTCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000166358.8
CDS CCA 72 bp AATCGCAGCTCCTGCAGCCCTGCCATGGTCACGTCGTaGAGCAGAAGCCCTGTCAGCAGTTGGAGCCTGTGT +
Preference number: 6 (lower is better)
Translates to: NRSSCSPAMVTS*SRSPVSSWSLC
Trigger: ACACAGGCTCCAACTGCTGACAGGGCTTCTGCTCCACGACGTGACCATGGCAGGGCTGCAGGAGCTGCGATT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000166358.8
CDS CCA 72 bp AGGAAGGCGTCAGGGTTATCCATCTCAGTGGCATCCTaGCCGCGGAGCAGGGGCTTCTCCTCAGGAAATCGC +
Preference number: 6 (lower is better)
Translates to: RKASGLSISVAS*PRSRGFSSGNR
Trigger: GCGATTTCCTGAGGAGAAGCCCCTGCTCCGCGGCCAGGATGCCACTGAGATGGATAACCCTGACGCCTTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000160964.8
ENSMUST00000166358.8
CDS CCA 72 bp CAATTGAGAGGAAGGCGTCAGGGTTATCCATCTCAGTaGCATCCTGGCCGCGGAGCAGGGGCTTCTCCTCAG +
Preference number: 6 (lower is better)
Translates to: QLRGRRQGYPSQ*HPGRGAGASPQ
Trigger: CTGAGGAGAAGCCCCTGCTCCGCGGCCAGGATGCCACTGAGATGGATAACCCTGACGCCTTCCTCTCAATTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000041318.14
ENSMUST00000160964.8
ENSMUST00000166358.8
CDS CAA 90 bp TGTGGGAGACAGATGGCACTGGACACTTCCAGTCTGTGTCCACAATaGAGAGGAAGGCGTCAGGGTTATCCATCTCAGTGGCATCCTGGC +
Preference number: 6 (lower is better)
Translates to: CGRQMALDTSSLCPQ*RGRRQGYPSQWHPG
Trigger: GCCAGGATGCCACTGAGATGGATAACCCTGACGCCTTCCTCTCAATTGTGGACACAGACTGGAAGTGTCCAGTGCCATCTGTCTCCCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
CDS TCA 72 bp AGATGGCACTGGACACTTCCAGTCTGTGTCCACAATTaGGAGGAAGGCGTCAGGGTTATCCATCTCAGTGGC +
Preference number: 6 (lower is better)
Translates to: RWHWTLPVCVHN*EEGVRVIHLSG
Trigger: GCCACTGAGATGGATAACCCTGACGCCTTCCTCTCAATTGTGGACACAGACTGGAAGTGTCCAGTGCCATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
CDS CAA 72 bp CAGATGGCACTGGACACTTCCAGTCTGTGTCCACAATaGAGAGGAAGGCGTCAGGGTTATCCATCTCAGTGG +
Preference number: 6 (lower is better)
Translates to: QMALDTSSLCPQ*RGRRQGYPSQW
Trigger: CCACTGAGATGGATAACCCTGACGCCTTCCTCTCAATTGTGGACACAGACTGGAAGTGTCCAGTGCCATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000166358.8
CDS CAA 72 bp TCTCGATGTCATGTTCCTTCCAGTCTGTGTCCACAATaGAGAGGAAGGCGTCAGGGTTATCCATCTCAGTGG +
Preference number: 6 (lower is better)
Translates to: SRCHVPSSLCPQ*RGRRQGYPSQW
Trigger: CCACTGAGATGGATAACCCTGACGCCTTCCTCTCAATTGTGGACACAGACTGGAAGGAACATGACATCGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041318.14
ENSMUST00000160964.8