Pregenerated sensors for NDP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040138Ensembl transcript IDs: ENSMUST00000040134.8
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTCCATCTTTATCTGCCTTAACTCTTTTCTTGCCAGTCCGTCTCTaGCAGGTTGAACTGCTCCTGTGGTTGTGCCAGTCAGAAAGCCAA | + |
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Preference number: 1 (lower is better) Translates to: APSLSALTLFLPVRL*QVELLLWLCQSESQ Trigger: TTGGCTTTCTGACTGGCACAACCACAGGAGCAGTTCAACCTGCCAGAGACGGACTGGCAAGAAAAGAGTTAAGGCAGATAAAGATGGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR TCA 90 bp | TTTATCTGCCTTAACTCTTTTCTTGCCAGTCCGTCTCTGGCAGGTTaGACTGCTCCTGTGGTTGTGCCAGTCAGAAAGCCAATCATCAGC | + |
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Preference number: 1 (lower is better) Translates to: FICLNSFLASPSLAG*TAPVVVPVRKPIIS Trigger: GCTGATGATTGGCTTTCTGACTGGCACAACCACAGGAGCAGTTCAACCTGCCAGAGACGGACTGGCAAGAAAAGAGTTAAGGCAGATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR TCA 90 bp | CCAAGTATAATGTATGCCTTCTCCAGAGTCAGTGCAGGATCCACCTaGGTGTGTATGTGTGAAAGCCTGCTTCCTCACAAAAGGCTTCAG | + |
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Preference number: 1 (lower is better) Translates to: PSIMYAFSRVSAGST*VCMCESLLPHKRLQ Trigger: CTGAAGCCTTTTGTGAGGAAGCAGGCTTTCACACATACACACTCAGGTGGATCCTGCACTGACTCTGGAGAAGGCATACATTATACTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR TCA 90 bp | AAAAGAACCCATGTGTTAGTTATTTTAGTAGCAGTTAGCTGGCTGTaGGTAAGCCTCACTAAACATCCATGGACTGGGTGTCCAGATCTT | + |
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Preference number: 1 (lower is better) Translates to: KRTHVLVILVAVSWL*VSLTKHPWTGCPDL Trigger: AAGATCTGGACACCCAGTCCATGGATGTTTAGTGAGGCTTACTCACAGCCAGCTAACTGCTACTAAAATAACTAACACATGGGTTCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR GCA 90 bp | CACATTGAGTCTTTAGGACAAGAATATGCAAAATCCTATGGGACTTaGTCCATCTTTATCTGCCTTAACTCTTTTCTTGCCAGTCCGTCT | + |
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Preference number: 1 (lower is better) Translates to: HIESLGQEYAKSYGT*SIFICLNSFLASPS Trigger: AGACGGACTGGCAAGAAAAGAGTTAAGGCAGATAAAGATGGAGCAAGTCCCATAGGATTTTGCATATTCTTGTCCTAAAGACTCAATGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR-3UTR GCA 90 bp | GACATGCTATTGCACAGGGCCCCACATTTTCCCACTAATGCAGAGCTGTCAGGCTCTGGCAGGTTGAACTaGTCCTGTGGTTGTGCCAGT | + |
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Preference number: 2 (lower is better) Translates to: DMLLHRAPHFPTNAELSGSGRLN*SCGCAS Trigger: ACTGGCACAACCACAGGAGCAGTTCAACCTGCCAGA...GCCTGACAGCTCTGCATTAGTGGGAAAATGTGGGGCCCTGTGCAATAGCATGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR CAA 90 bp | AATCCTATGGGACTTGCTCCATCTTTATCTGCCTTAACTCTTTTCTaGCCAGTCCGTCTCTGGCAGGTTGAACTGCTCCTGTGGTTGTGC | + |
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Preference number: 2 (lower is better) Translates to: NPMGLAPSLSALTLF*PVRLWQVELLLWLC Trigger: GCACAACCACAGGAGCAGTTCAACCTGCCAGAGACGGACTGGCAAGAAAAGAGTTAAGGCAGATAAAGATGGAGCAAGTCCCATAGGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR-3UTR TCA 90 bp | CACACCAAGTATAATGTATGCCTTCTCCAGAGTCAGTGCAGGATCCACCTGAGTGAAAGGAGATGGGAATaGAAAGCAAGTTCCCAGAGT | + |
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Preference number: 2 (lower is better) Translates to: HTKYNVCLLQSQCRIHLSERRWE*KASSQS Trigger: ACTCTGGGAACTTGCTTTTCATTCCCATCTCCTTTC...ACTCAGGTGGATCCTGCACTGACTCTGGAGAAGGCATACATTATACTTGGTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR-3UTR GCA 90 bp | CACACCAAGTATAATGTATGCCTTCTCCAGAGTCAGTGCAGGATCCACCTGAGTTGCTCCATCTTTATCTaGCTTAACTCTTTTCTTGCC | + |
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Preference number: 2 (lower is better) Translates to: HTKYNVCLLQSQCRIHLSCSIFI*LNSFLA Trigger: GGCAAGAAAAGAGTTAAGGCAGATAAAGATGGAGCA...ACTCAGGTGGATCCTGCACTGACTCTGGAGAAGGCATACATTATACTTGGTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR-3UTR GCA 90 bp | CACACCAAGTATAATGTATGCCTTCTCCAGAGTCAGTGCAGGATCCACCTGAGTAAATCCTATGGGACTTaGTCCATCTTTATCTGCCTT | + |
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Preference number: 2 (lower is better) Translates to: HTKYNVCLLQSQCRIHLSKSYGT*SIFICL Trigger: AAGGCAGATAAAGATGGAGCAAGTCCCATAGGATTT...ACTCAGGTGGATCCTGCACTGACTCTGGAGAAGGCATACATTATACTTGGTGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR-3UTR TCA 90 bp | TGTGAAAGCCTGCTTCCTCACAAAAGGCTTCAGATTATAAATTCCTCTGCCACACCCCTCAGTCACTTCTaGATAATTACTATAGTGGTC | + |
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Preference number: 2 (lower is better) Translates to: CESLLPHKRLQIINSSATPLSHF*IITIVV Trigger: GACCACTATAGTAATTATTCAGAAGTGACTGAGGGG...TGTGGCAGAGGAATTTATAATCTGAAGCCTTTTGTGAGGAAGCAGGCTTTCACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR-3UTR TCA 90 bp | TCACATAGACAGGTGGATATAGCTAAGATATGGCTGAAGCTATTGCACACCCACACTAATGCTCAATTATaGGTATGGTGTGTTCTCCAC | + |
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Preference number: 2 (lower is better) Translates to: SHRQVDIAKIWLKLLHTHTNAQL*VWCVLH Trigger: GTGGAGAACACACCATACTCATAATTGAGCATTAGT...GTGGGTGTGCAATAGCTTCAGCCATATCTTAGCTATATCCACCTGTCTATGTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR-3UTR GCA 90 bp | TTGAAACAAAAATTTCAGACAATAAGTCGGGCCACCACTACGGCAACAAGCTTCACCAAGTATAATGTATaGCTTCTCCAGAGTCAGTGC | + |
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Preference number: 2 (lower is better) Translates to: LKQKFQTISRATTTATSFTKYNV*LLQSQC Trigger: GCACTGACTCTGGAGAAGGCATACATTATACTTGGT...GAAGCTTGTTGCCGTAGTGGTGGCCCGACTTATTGTCTGAAATTTTTGTTTCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR-3UTR CAA 90 bp | TGCTATTGCACAGGGCCCCACATTTTCCCACTAATGCAGAGCTGTCAGGCACCCTCCGTCTCTGGCAGGTaGAACTGCTCCTGTGGTTGT | + |
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Preference number: 3 (lower is better) Translates to: CYCTGPHIFPLMQSCQAPSVSGR*NCSCGC Trigger: ACAACCACAGGAGCAGTTCAACCTGCCAGAGACGGA...GGGTGCCTGACAGCTCTGCATTAGTGGGAAAATGTGGGGCCCTGTGCAATAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR TCA 72 bp | CTTAACTCTTTTCTTGCCAGTCCGTCTCTGGCAGGTTaGACTGCTCCTGTGGTTGTGCCAGTCAGAAAGCCA | + |
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Preference number: 3 (lower is better) Translates to: LNSFLASPSLAG*TAPVVVPVRKP Trigger: TGGCTTTCTGACTGGCACAACCACAGGAGCAGTTCAACCTGCCAGAGACGGACTGGCAAGAAAAGAGTTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR CCA 72 bp | TTATCTGCCTTAACTCTTTTCTTGCCAGTCCGTCTCTaGCAGGTTGAACTGCTCCTGTGGTTGTGCCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: LSALTLFLPVRL*QVELLLWLCQS Trigger: TGACTGGCACAACCACAGGAGCAGTTCAACCTGCCAGAGACGGACTGGCAAGAAAAGAGTTAAGGCAGATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR TCA 72 bp | ATGTATGCCTTCTCCAGAGTCAGTGCAGGATCCACCTaGGTGTGTATGTGTGAAAGCCTGCTTCCTCACAAA | + |
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Preference number: 3 (lower is better) Translates to: MYAFSRVSAGST*VCMCESLLPHK Trigger: TTTGTGAGGAAGCAGGCTTTCACACATACACACTCAGGTGGATCCTGCACTGACTCTGGAGAAGGCATACAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR-3UTR CAA 90 bp | TCACATAGACAGGTGGATATAGCTAAGATATGGCTGAAGCTATTGCACACCCACGCCTTAACTCTTTTCTaGCCAGTCCGTCTCTGGCAG | + |
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Preference number: 3 (lower is better) Translates to: SHRQVDIAKIWLKLLHTHALTLF*PVRLWQ Trigger: CTGCCAGAGACGGACTGGCAAGAAAAGAGTTAAGGC...GTGGGTGTGCAATAGCTTCAGCCATATCTTAGCTATATCCACCTGTCTATGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR-3UTR CAA 90 bp | CACACCAAGTATAATGTATGCCTTCTCCAGAGTCAGTGCAGGATCCACCTGAGTAAAATCCTATGGGACTaGCTCCATCTTTATCTGCCT | + |
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Preference number: 3 (lower is better) Translates to: HTKYNVCLLQSQCRIHLSKILWD*LHLYLP Trigger: AGGCAGATAAAGATGGAGCAAGTCCCATAGGATTTT...ACTCAGGTGGATCCTGCACTGACTCTGGAGAAGGCATACATTATACTTGGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR GCA 72 bp | TCTTTAGGACAAGAATATGCAAAATCCTATGGGACTTaGTCCATCTTTATCTGCCTTAACTCTTTTCTTGCC | + |
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Preference number: 3 (lower is better) Translates to: SLGQEYAKSYGT*SIFICLNSFLA Trigger: GGCAAGAAAAGAGTTAAGGCAGATAAAGATGGAGCAAGTCCCATAGGATTTTGCATATTCTTGTCCTAAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS-3UTR GCA 90 bp | TCTTGCCAGTCCGTCTCTGGCAGGTTGAACTGCTCCTGTGGTTGTGCCAGTCAGGATGCCTGGCTGCAGTaGCCCTCACATCTGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: SCQSVSGRLNCSCGCASQDAWLQ*PSHLAR Trigger: CCTGGCCAGATGTGAGGGGCACTGCAGCCAGGCATC...CTGACTGGCACAACCACAGGAGCAGTTCAACCTGCCAGAGACGGACTGGCAAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS-3UTR TCA 90 bp | GACATGCTATTGCACAGGGCCCCACATTTTCCCACTAATGCAGAGCTGTCAGGCAAGTCGCATGCCCCCTaGGCAGCGCAGACGCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: DMLLHRAPHFPTNAELSGKSHAP*AAQTQS Trigger: GCTCTGCGTCTGCGCTGCTCAGGGGGCATGCGACTT...GCCTGACAGCTCTGCATTAGTGGGAAAATGTGGGGCCCTGTGCAATAGCATGTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS-3UTR GCA 90 bp | GACATGCTATTGCACAGGGCCCCACATTTTCCCACTAATGCAGAGCTGTCAGGCAGCGTGATGCCTGGCTaGAGTGCCCCTCACATCTGG | + |
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Preference number: 4 (lower is better) Translates to: DMLLHRAPHFPTNAELSGSVMPG*SAPHIW Trigger: CCAGATGTGAGGGGCACTGCAGCCAGGCATCACGCT...GCCTGACAGCTCTGCATTAGTGGGAAAATGTGGGGCCCTGTGCAATAGCATGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS-3UTR TCA 90 bp | GACATGCTATTGCACAGGGCCCCACATTTTCCCACTAATGCAGAGCTGTCAGGCCAGGAGCACCATCTTTaGGCTACATTTGTACAGTGG | + |
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Preference number: 4 (lower is better) Translates to: DMLLHRAPHFPTNAELSGQEHHL*ATFVQW Trigger: CCACTGTACAAATGTAGCTCAAAGATGGTGCTCCTG...GCCTGACAGCTCTGCATTAGTGGGAAAATGTGGGGCCCTGTGCAATAGCATGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS-3UTR CCA 90 bp | TTGAAACAAAAATTTCAGACAATAAGTCGGGCCACCACTACGGCAACAAGCTTCGCAGAGCCTTCAGCTTaGAAGTCTGGGGTCGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LKQKFQTISRATTTATSFAEPSA*KSGVGS Trigger: GCTGCCGACCCCAGACTTCCAAGCTGAAGGCTCTGC...GAAGCTTGTTGCCGTAGTGGTGGCCCGACTTATTGTCTGAAATTTTTGTTTCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| 3UTR CAA 72 bp | GGACTTGCTCCATCTTTATCTGCCTTAACTCTTTTCTaGCCAGTCCGTCTCTGGCAGGTTGAACTGCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: GLAPSLSALTLF*PVRLWQVELLL Trigger: CAGGAGCAGTTCAACCTGCCAGAGACGGACTGGCAAGAAAAGAGTTAAGGCAGATAAAGATGGAGCAAGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS-3UTR CCA 90 bp | GGACAAGAATATGCAAAATCCTATGGGACTTGCTCCATCTTTATCTGCCTTAACTCAGAGCGTGATGCCTaGCTGCAGTGCCCCTCACAT | + |
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Preference number: 4 (lower is better) Translates to: GQEYAKSYGTCSIFICLNSERDA*LQCPSH Trigger: ATGTGAGGGGCACTGCAGCCAGGCATCACGCTCTGA...GTTAAGGCAGATAAAGATGGAGCAAGTCCCATAGGATTTTGCATATTCTTGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS-3UTR TCA 90 bp | CACACCAAGTATAATGTATGCCTTCTCCAGAGTCAGTGCAGGATCCACCTGAGTAGAGTCCATCAGAAATaGACTGTCTGTTTTGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: HTKYNVCLLQSQCRIHLSRVHQK*TVCFAV Trigger: GACAGCAAAACAGACAGTTCATTTCTGATGGACTCT...ACTCAGGTGGATCCTGCACTGACTCTGGAGAAGGCATACATTATACTTGGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS-3UTR GCA 90 bp | TCTGCCACATTTATATCCCCTCAGTCACTTCTGAATAATTACTATAGTGGTCAGGAGGAACGGAAAGGTTaGTTGAGGACAGTGCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: SATFISPQSLLNNYYSGQEERKG*LRTVLK Trigger: CTTCAGCACTGTCCTCAAGCAACCTTTCCGTTCCTC...CTGACCACTATAGTAATTATTCAGAAGTGACTGAGGGGATATAAATGTGGCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS-3UTR CCA 90 bp | GTCTTTAGGACAAGAATATGCAAAATCCTATGGGACTTGCTCCATCTTTATCTGGCTACATTTGTACAGTaGGTGACTGATAGAATCGAC | + |
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Preference number: 4 (lower is better) Translates to: VFRTRICKILWDLLHLYLATFVQ*VTDRID Trigger: GTCGATTCTATCAGTCACCCACTGTACAAATGTAGC...CAGATAAAGATGGAGCAAGTCCCATAGGATTTTGCATATTCTTGTCCTAAAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS TCA 90 bp | ACAGGAGAGGATGTACCGGTAAGTGGCAGTAAGTCGCATGCCCCCTaGGCAGCGCAGACGCAGAGCCTTCAGCTTGGAAGTCTGGGGTCG | + |
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Preference number: 5 (lower is better) Translates to: TGEDVPVSGSKSHAP*AAQTQSLQLGSLGS Trigger: CGACCCCAGACTTCCAAGCTGAAGGCTCTGCGTCTGCGCTGCTCAGGGGGCATGCGACTTACTGCCACTTACCGGTACATCCTCTCCTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS TCA 90 bp | CGCAGACGCAGAGCCTTCAGCTTGGAAGTCTGGGGTCGGCAGCAGTaGCAGGAGGAACGGAAAGGTTGCTTGAGGACAGTGCTGAAGGAC | + |
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Preference number: 5 (lower is better) Translates to: RRRRAFSLEVWGRQQ*QEERKGCLRTVLKD Trigger: GTCCTTCAGCACTGTCCTCAAGCAACCTTTCCGTTCCTCCTGTCACTGCTGCCGACCCCAGACTTCCAAGCTGAAGGCTCTGCGTCTGCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS GCA 90 bp | GTGCTGAAGGACACCAAGGGCTCAGAGCGTGATGCCTGGCTGCAGTaGCCCTCACATCTGGCCAGGAGCACCATCTTTGAGCTACATTTG | + |
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Preference number: 5 (lower is better) Translates to: VLKDTKGSERDAWLQ*PSHLARSTIFELHL Trigger: CAAATGTAGCTCAAAGATGGTGCTCCTGGCCAGATGTGAGGGGCACTGCAGCCAGGCATCACGCTCTGAGCCCTTGGTGTCCTTCAGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS-3UTR CAA 90 bp | CACACCAAGTATAATGTATGCCTTCTCCAGAGTCAGTGCAGGATCCACCTGAGTCGCAGAGCCTTCAGCTaGGAAGTCTGGGGTCGGCAG | + |
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Preference number: 5 (lower is better) Translates to: HTKYNVCLLQSQCRIHLSRRAFS*EVWGRQ Trigger: CTGCCGACCCCAGACTTCCAAGCTGAAGGCTCTGCG...ACTCAGGTGGATCCTGCACTGACTCTGGAGAAGGCATACATTATACTTGGTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS-3UTR CAA 90 bp | GACATGCTATTGCACAGGGCCCCACATTTTCCCACTAATGCAGAGCTGTCAGGCGGAGGAACGGAAAGGTaGCTTGAGGACAGTGCTGAA | + |
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Preference number: 5 (lower is better) Translates to: DMLLHRAPHFPTNAELSGGGTER*LEDSAE Trigger: TTCAGCACTGTCCTCAAGCAACCTTTCCGTTCCTCC...GCCTGACAGCTCTGCATTAGTGGGAAAATGTGGGGCCCTGTGCAATAGCATGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS-3UTR CAA 90 bp | TCACATAGACAGGTGGATATAGCTAAGATATGGCTGAAGCTATTGCACACCCACGAACGGAAAGGTTGCTaGAGGACAGTGCTGAAGGAC | + |
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Preference number: 5 (lower is better) Translates to: SHRQVDIAKIWLKLLHTHERKGC*RTVLKD Trigger: GTCCTTCAGCACTGTCCTCAAGCAACCTTTCCGTTC...GTGGGTGTGCAATAGCTTCAGCCATATCTTAGCTATATCCACCTGTCTATGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS TCA 90 bp | ATCGACATAATGGTGTCTCATGCAGCGTTGAGAGTCCATCAGAAATaGACTGTCTGTTTTGCTGTCTGTATCTCCCATTATGGCCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: IDIMVSHAALRVHQK*TVCFAVCISHYGQQ Trigger: CTGCTGGCCATAATGGGAGATACAGACAGCAAAACAGACAGTTCATTTCTGATGGACTCTCAACGCTGCATGAGACACCATTATGTCGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS CCA 72 bp | TGCCCCCTGAGCAGCGCAGACGCAGAGCCTTCAGCTTaGAAGTCTGGGGTCGGCAGCAGTGACAGGAGGAAC | + |
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Preference number: 6 (lower is better) Translates to: CPLSSADAEPSA*KSGVGSSDRRN Trigger: GTTCCTCCTGTCACTGCTGCCGACCCCAGACTTCCAAGCTGAAGGCTCTGCGTCTGCGCTGCTCAGGGGGCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS GCA 72 bp | GACACCAAGGGCTCAGAGCGTGATGCCTGGCTGCAGTaGCCCTCACATCTGGCCAGGAGCACCATCTTTGAG | + |
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Preference number: 6 (lower is better) Translates to: DTKGSERDAWLQ*PSHLARSTIFE Trigger: CTCAAAGATGGTGCTCCTGGCCAGATGTGAGGGGCACTGCAGCCAGGCATCACGCTCTGAGCCCTTGGTGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS TCA 72 bp | GATGTACCGGTAAGTGGCAGTAAGTCGCATGCCCCCTaGGCAGCGCAGACGCAGAGCCTTCAGCTTGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: DVPVSGSKSHAP*AAQTQSLQLGS Trigger: ACTTCCAAGCTGAAGGCTCTGCGTCTGCGCTGCTCAGGGGGCATGCGACTTACTGCCACTTACCGGTACATC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS CCA 72 bp | CAGAGCGTGATGCCTGGCTGCAGTGCCCCTCACATCTaGCCAGGAGCACCATCTTTGAGCTACATTTGTACA | + |
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Preference number: 6 (lower is better) Translates to: QSVMPGCSAPHI*PGAPSLSYICT Trigger: TGTACAAATGTAGCTCAAAGATGGTGCTCCTGGCCAGATGTGAGGGGCACTGCAGCCAGGCATCACGCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS GCA 72 bp | AGCGTTGAGAGTCCATCAGAAATGAACTGTCTGTTTTaGTGTCTGTATCTCCCATTATGGCCAGCAGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: SVESPSEMNCLF*CLYLPLWPAGR Trigger: TCTCCCTGCTGGCCATAATGGGAGATACAGACAGCAAAACAGACAGTTCATTTCTGATGGACTCTCAACGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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| CDS TCA 72 bp | ATGGTGTCTCATGCAGCGTTGAGAGTCCATCAGAAATaGACTGTCTGTTTTGCTGTCTGTATCTCCCATTAT | + |
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Preference number: 6 (lower is better) Translates to: MVSHAALRVHQK*TVCFAVCISHY Trigger: ATAATGGGAGATACAGACAGCAAAACAGACAGTTCATTTCTGATGGACTCTCAACGCTGCATGAGACACCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040134.8 |
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