Pregenerated sensors for NDN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033585Ensembl transcript IDs: ENSMUST00000038775.6
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | GTCATATGGAGAAAGGCCTTGACCTTTCTCTTGCTCAGGTCTGCGTaGCTGTTAAGTCCTGCTAACTCTCCAGGGCCTTCTTTGTCGATA | + |
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Preference number: 2 (lower is better) Translates to: VIWRKALTFLLLRSA*LLSPANSPGPSLSI Trigger: TATCGACAAAGAAGGCCCTGGAGAGTTAGCAGGACTTAACAGCAACGCAGACCTGAGCAAGAGAAAGGTCAAGGCCTTTCTCCATATGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| 3UTR-3UTR CCA 90 bp | TGCTTATGCTGCACACAGGGAGAATCTTTCTCATCCCCACCCATTCCCACTCCCCCAGTTGAAGTCATATaGAGAAAGGCCTTGACCTTT | + |
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Preference number: 2 (lower is better) Translates to: CLCCTQGESFSSPPIPTPPVEVI*RKALTF Trigger: AAAGGTCAAGGCCTTTCTCCATATGACTTCAACTGG...GGGAGTGGGAATGGGTGGGGATGAGAAAGATTCTCCCTGTGTGCAGCATAAGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| 3UTR-3UTR GCA 90 bp | AAGCACTGCAAGTTTCTTCTGAGTGGTCGTGTGGTCTCCCACTGTGTTAGGACACGTGTTTGCTTATGCTaGACACAGGGAGAATCTTTC | + |
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Preference number: 2 (lower is better) Translates to: KHCKFLLSGRVVSHCVRTRVCLC*TQGESF Trigger: GAAAGATTCTCCCTGTGTGCAGCATAAGCAAACACG...TGTCCTAACACAGTGGGAGACCACACGACCACTCAGAAGAAACTTGCAGTGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| 3UTR-3UTR GCA 90 bp | TTCAAATCAGTCCATTCCACATGGATGCTTCCTGTGCCAGTTGAAGTCATATGGTTATACATGAAATACTaGACTGTGGATTTGGGATAC | + |
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Preference number: 2 (lower is better) Translates to: FKSVHSTWMLPVPVEVIWLYMKY*TVDLGY Trigger: GTATCCCAAATCCACAGTGCAGTATTTCATGTATAA...CCATATGACTTCAACTGGCACAGGAAGCATCCATGTGGAATGGACTGATTTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| 3UTR-3UTR CCA 90 bp | CACAAGTTTAGCACAGCACATCTCTTGTACAAAAATGCACGAAAGCACAAAAGTACTGCACTGTGGATTTaGGATACTCTAATGACTCAA | + |
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Preference number: 2 (lower is better) Translates to: HKFSTAHLLYKNARKHKSTALWI*DTLMTQ Trigger: TTGAGTCATTAGAGTATCCCAAATCCACAGTGCAGT...ACTTTTGTGCTTTCGTGCATTTTTGTACAAGAGATGTGCTGTGCTAAACTTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| 3UTR-3UTR CAA 90 bp | TGCTTATGCTGCACACAGGGAGAATCTTTCTCATCCCCACCCATTCCCACTCCCAGCACAGCACATCTCTaGTACAAAAATGCACGAAAG | + |
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Preference number: 3 (lower is better) Translates to: CLCCTQGESFSSPPIPTPSTAHL*YKNARK Trigger: CTTTCGTGCATTTTTGTACAAGAGATGTGCTGTGCT...GGGAGTGGGAATGGGTGGGGATGAGAAAGATTCTCCCTGTGTGCAGCATAAGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| 3UTR CCA 72 bp | TCCACATGGATGCTTCCTGTGCCAGTTGAAGTCATATaGAGAAAGGCCTTGACCTTTCTCTTGCTCAGGTCT | + |
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Preference number: 3 (lower is better) Translates to: STWMLPVPVEVI*RKALTFLLLRS Trigger: AGACCTGAGCAAGAGAAAGGTCAAGGCCTTTCTCCATATGACTTCAACTGGCACAGGAAGCATCCATGTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| 3UTR TCA 72 bp | ATCAGTCCATTCCACATGGATGCTTCCTGTGCCAGTTaGAGTCATATGGAGAAAGGCCTTGACCTTTCTCTT | + |
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Preference number: 3 (lower is better) Translates to: ISPFHMDASCAS*SHMEKGLDLSL Trigger: AAGAGAAAGGTCAAGGCCTTTCTCCATATGACTTCAACTGGCACAGGAAGCATCCATGTGGAATGGACTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| 3UTR GCA 72 bp | GAACAGTCCAGTTCAAATCAGTCCATTCCACATGGATaGTTCCTGTGCCAGTTGAAGTCATATGGAGAAAGG | + |
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Preference number: 3 (lower is better) Translates to: EQSSSNQSIPHG*FLCQLKSYGER Trigger: CCTTTCTCCATATGACTTCAACTGGCACAGGAAGCATCCATGTGGAATGGACTGATTTGAACTGGACTGTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| 3UTR TCA 72 bp | CATGCATCAATCTTAAACACTACACGAGTACACAAATaGATAGCATTACAAGGTACAAAAGCACTGTATGGA | + |
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Preference number: 3 (lower is better) Translates to: HASILNTTRVHK*IALQGTKALYG Trigger: TCCATACAGTGCTTTTGTACCTTGTAATGCTATTCATTTGTGTACTCGTGTAGTGTTTAAGATTGATGCATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR GCA 90 bp | AAGCACTGCAAGTTTCTTCTGAGTGGTCGTGTGGTCTCCCACTGTGTTAGGACACGAGGCCTGTTGGGCTaGCATAGGGCCTTCGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: KHCKFLLSGRVVSHCVRTRGLLG*HRAFGS Trigger: GCTCCCGAAGGCCCTATGGCAGCCCAACAGGCCTCG...TGTCCTAACACAGTGGGAGACCACACGACCACTCAGAAGAAACTTGCAGTGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR GCA 90 bp | TGCTTATGCTGCACACAGGGAGAATCTTTCTCATCCCCACCCATTCCCACTCCCTTGGTCAGCCTCAGGTaGAGCCCGAACACTCTGGCG | + |
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Preference number: 4 (lower is better) Translates to: CLCCTQGESFSSPPIPTPLVSLR*SPNTLA Trigger: CGCCAGAGTGTTCGGGCTGCACCTGAGGCTGACCAA...GGGAGTGGGAATGGGTGGGGATGAGAAAGATTCTCCCTGTGTGCAGCATAAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR CCA 90 bp | TTCAAATCAGTCCATTCCACATGGATGCTTCCTGTGCCAGTTGAAGTCATATGGCAGCTGGGCAGGGGCTaGCGGTGCTGGGATCGGCCG | + |
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Preference number: 4 (lower is better) Translates to: FKSVHSTWMLPVPVEVIWQLGRG*RCWDRP Trigger: CGGCCGATCCCAGCACCGCCAGCCCCTGCCCAGCTG...CCATATGACTTCAACTGGCACAGGAAGCATCCATGTGGAATGGACTGATTTGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR GCA 90 bp | CATTCCACATGGATGCTTCCTGTGCCAGTTGAAGTCATATGGAGAAAGGCCTTGGGCGCGGCCCTCCTCTaGGGCCTGCTGCAGGATTTT | + |
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Preference number: 4 (lower is better) Translates to: HSTWMLPVPVEVIWRKALGAALL*GLLQDF Trigger: AAAATCCTGCAGCAGGCCGCAGAGGAGGGCCGCGCC...CAAGGCCTTTCTCCATATGACTTCAACTGGCACAGGAAGCATCCATGTGGAATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR GCA 90 bp | AAGCACTGCAAGTTTCTTCTGAGTGGTCGTGTGGTCTCCCACTGTGTTAGGACAACGGCATCGCTGTCCTaGATCTCACAGTCGGGGACC | + |
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Preference number: 4 (lower is better) Translates to: KHCKFLLSGRVVSHCVRTTASLS*ISQSGT Trigger: GGTCCCCGACTGTGAGATGCAGGACAGCGATGCCGT...TGTCCTAACACAGTGGGAGACCACACGACCACTCAGAAGAAACTTGCAGTGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR GCA 90 bp | AAGCACTGCAAGTTTCTTCTGAGTGGTCGTGTGGTCTCCCACTGTGTTAGGACATACCACATGAGCTCGTaGGCCTTCTGCACCAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: KHCKFLLSGRVVSHCVRTYHMSS*AFCTSW Trigger: CCAGCTGGTGCAGAAGGCGCACGAGCTCATGTGGTA...TGTCCTAACACAGTGGGAGACCACACGACCACTCAGAAGAAACTTGCAGTGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR CCA 90 bp | AGCACAGCACATCTCTTGTACAAAAATGCACGAAAGCACAAAAGTGAAAGTACCTGGGATCGGCCGGGCTaGACTCTGGGGCTGGTGGGC | + |
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Preference number: 4 (lower is better) Translates to: STAHLLYKNARKHKSESTWDRPG*TLGLVG Trigger: GCCCACCAGCCCCAGAGTCCAGCCCGGCCGATCCCA...GGTACTTTCACTTTTGTGCTTTCGTGCATTTTTGTACAAGAGATGTGCTGTGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR CCA 90 bp | AAGCACTGCAAGTTTCTTCTGAGTGGTCGTGTGGTCTCCCACTGTGTTAGGACACCAGGGCAAACTCCATaGTGTGGAGATTGGTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: KHCKFLLSGRVVSHCVRTPGQTP*CGDWSA Trigger: GGCTGACCAATCTCCACACCATGGAGTTTGCCCTGG...TGTCCTAACACAGTGGGAGACCACACGACCACTCAGAAGAAACTTGCAGTGCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR TCA 90 bp | CTGTTAAGTCCTGCTAACTCTCCAGGGCCTTCTTTGTCGATACAGATCATCAGTCCAACACGTACCACATaGGCTCGTGCGCCTTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: LLSPANSPGPSLSIQIISPTRTT*ARAPSA Trigger: TGCAGAAGGCGCACGAGCTCATGTGGTACGTGTTGG...ACTGATGATCTGTATCGACAAAGAAGGCCCTGGAGAGTTAGCAGGACTTAACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR GCA 90 bp | AAGCACTGCAAGTTTCTTCTGAGTGGTCGTGTGGTCTCCCACTGTGTTAGGACATCCTCTGCGGCCTGCTaGAGGATTTTAGGGTCAACA | + |
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Preference number: 4 (lower is better) Translates to: KHCKFLLSGRVVSHCVRTSSAAC*RILGST Trigger: TGTTGACCCTAAAATCCTGCAGCAGGCCGCAGAGGA...TGTCCTAACACAGTGGGAGACCACACGACCACTCAGAAGAAACTTGCAGTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR CCA 90 bp | AGCACAGCACATCTCTTGTACAAAAATGCACGAAAGCACAAAAGTGAAAGTACCAGACCGCACCCTCTCTaGCCCCGCGGCCCTTCACAT | + |
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Preference number: 4 (lower is better) Translates to: STAHLLYKNARKHKSESTRPHPL*PRGPSH Trigger: ATGTGAAGGGCCGCGGGGCCAGAGAGGGTGCGGTCT...GGTACTTTCACTTTTGTGCTTTCGTGCATTTTTGTACAAGAGATGTGCTGTGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR TCA 90 bp | TTCAAATCAGTCCATTCCACATGGATGCTTCCTGTGCCAGTTGAAGTCATATGGTGGGCATACGGTTGTTaGGCGCCACCCTGTCTAGCT | + |
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Preference number: 4 (lower is better) Translates to: FKSVHSTWMLPVPVEVIWWAYGC*APPCLA Trigger: AGCTAGACAGGGTGGCGCTCAACAACCGTATGCCCA...CCATATGACTTCAACTGGCACAGGAAGCATCCATGTGGAATGGACTGATTTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR GCA 90 bp | CACAAGTTTAGCACAGCACATCTCTTGTACAAAAATGCACGAAAGCACAAAAGTAGCTCGTGCGCCTTCTaGACCAGCTGGGCAGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: HKFSTAHLLYKNARKHKSSSCAF*TSWAGA Trigger: AGCCCCTGCCCAGCTGGTGCAGAAGGCGCACGAGCT...ACTTTTGTGCTTTCGTGCATTTTTGTACAAGAGATGTGCTGTGCTAAACTTGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR CCA 90 bp | CAGCACATCTCTTGTACAAAAATGCACGAAAGCACAAAAGTGAAAGTACCAAATGGTGGCGAGGCCTGTTaGGCTGCCATAGGGCCTTCG | + |
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Preference number: 4 (lower is better) Translates to: QHISCTKMHESTKVKVPNGGEAC*AAIGPS Trigger: CGAAGGCCCTATGGCAGCCCAACAGGCCTCGCCACC...ATTTGGTACTTTCACTTTTGTGCTTTCGTGCATTTTTGTACAAGAGATGTGCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR CCA 90 bp | AGCACAGCACATCTCTTGTACAAAAATGCACGAAAGCACAAAAGTGAAAGTACCTCGGGAGGCTCGATGTaGGGCACACGCTGGTACTTC | + |
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Preference number: 4 (lower is better) Translates to: STAHLLYKNARKHKSESTSGGSM*GTRWYF Trigger: GAAGTACCAGCGTGTGCCCCACATCGAGCCTCCCGA...GGTACTTTCACTTTTGTGCTTTCGTGCATTTTTGTACAAGAGATGTGCTGTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| 3UTR CAA 72 bp | CTTCCTGTGCCAGTTGAAGTCATATGGAGAAAGGCCTaGACCTTTCTCTTGCTCAGGTCTGCGTTGCTGTTA | + |
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Preference number: 4 (lower is better) Translates to: LPVPVEVIWRKA*TFLLLRSALLL Trigger: TAACAGCAACGCAGACCTGAGCAAGAGAAAGGTCAAGGCCTTTCTCCATATGACTTCAACTGGCACAGGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| 3UTR CAA 72 bp | GTTGAAGTCATATGGAGAAAGGCCTTGACCTTTCTCTaGCTCAGGTCTGCGTTGCTGTTAAGTCCTGCTAAC | + |
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Preference number: 4 (lower is better) Translates to: VEVIWRKALTFL*LRSALLLSPAN Trigger: GTTAGCAGGACTTAACAGCAACGCAGACCTGAGCAAGAGAAAGGTCAAGGCCTTTCTCCATATGACTTCAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| 3UTR CAA 72 bp | TTGCTGTTAAGTCCTGCTAACTCTCCAGGGCCTTCTTaGTCGATACAGATCATCAGTCCCATACAAAGAACA | + |
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Preference number: 4 (lower is better) Translates to: LLLSPANSPGPS*SIQIISPIQRT Trigger: TGTTCTTTGTATGGGACTGATGATCTGTATCGACAAAGAAGGCCCTGGAGAGTTAGCAGGACTTAACAGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR CCA 90 bp | TACCTTTTATGTGACAAATTGATTAAAGCACTGCAAGTTTCTTCTGAGTGGTCGGCAAACTCCATGGTGTaGAGATTGGTCAGCCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: YLLCDKLIKALQVSSEWSANSMV*RLVSLR Trigger: CCTGAGGCTGACCAATCTCCACACCATGGAGTTTGC...CGACCACTCAGAAGAAACTTGCAGTGCTTTAATCAATTTGTCACATAAAAGGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR CCA 90 bp | TACCTTTTATGTGACAAATTGATTAAAGCACTGCAAGTTTCTTCTGAGTGGTCGAGGACCATCCTCTTCTaGTCCTTCACCAACACGTAC | + |
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Preference number: 4 (lower is better) Translates to: YLLCDKLIKALQVSSEWSRTILF*SFTNTY Trigger: GTACGTGTTGGTGAAGGACCAGAAGAGGATGGTCCT...CGACCACTCAGAAGAAACTTGCAGTGCTTTAATCAATTTGTCACATAAAAGGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS CCA 90 bp | CTGCAGGATTTTAGGGTCAACATCTTCTATCCGTTCTTCGGGCGGTaGCGAGGCCTGTTGGGCTGCCATAGGGCCTTCGGGAGCGCACGG | + |
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Preference number: 5 (lower is better) Translates to: LQDFRVNIFYPFFGR*RGLLGCHRAFGSAR Trigger: CCGTGCGCTCCCGAAGGCCCTATGGCAGCCCAACAGGCCTCGCCACCGCCCGAAGAACGGATAGAAGATGTTGACCCTAAAATCCTGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS CCA 90 bp | GCTCTGGCCTGCTCCAGAGCCTCCCTGTATCGGGAAGGCCACGCCTaGGGATCTTTCTTGAAGACTCTGGCCAGGAACTCCATGATCTGC | + |
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Preference number: 5 (lower is better) Translates to: ALACSRASLYREGHA*GSFLKTLARNSMIC Trigger: GCAGATCATGGAGTTCCTGGCCAGAGTCTTCAAGAAAGATCCCCAGGCGTGGCCTTCCCGATACAGGGAGGCTCTGGAGCAGGCCAGAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR CAA 90 bp | AAGCACTGCAAGTTTCTTCTGAGTGGTCGTGTGGTCTCCCACTGTGTTAGGACAATGGGCATACGGTTGTaGAGCGCCACCCTGTCTAGC | + |
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Preference number: 5 (lower is better) Translates to: KHCKFLLSGRVVSHCVRTMGIRL*SATLSS Trigger: GCTAGACAGGGTGGCGCTCAACAACCGTATGCCCAT...TGTCCTAACACAGTGGGAGACCACACGACCACTCAGAAGAAACTTGCAGTGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR CAA 90 bp | CATTCCACATGGATGCTTCCTGTGCCAGTTGAAGTCATATGGAGAAAGGCCTTGTCTGGGCTGAGGGCTTaGACCAGGGCAAACTCCATG | + |
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Preference number: 5 (lower is better) Translates to: HSTWMLPVPVEVIWRKALSGLRA*TRANSM Trigger: CATGGAGTTTGCCCTGGTCAAAGCCCTCAGCCCAGA...CAAGGCCTTTCTCCATATGACTTCAACTGGCACAGGAAGCATCCATGTGGAATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR CAA 90 bp | CATTCCACATGGATGCTTCCTGTGCCAGTTGAAGTCATATGGAGAAAGGCCTTGGTCATGGGCATACGGTaGTTGAGCGCCACCCTGTCT | + |
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Preference number: 5 (lower is better) Translates to: HSTWMLPVPVEVIWRKALVMGIR*LSATLS Trigger: AGACAGGGTGGCGCTCAACAACCGTATGCCCATGAC...CAAGGCCTTTCTCCATATGACTTCAACTGGCACAGGAAGCATCCATGTGGAATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR CAA 90 bp | TGCTTATGCTGCACACAGGGAGAATCTTTCTCATCCCCACCCATTCCCACTCCCTCCATGATCTGCATCTaGGTGATTTCACGGTTAGCT | + |
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Preference number: 5 (lower is better) Translates to: CLCCTQGESFSSPPIPTPSMICI*VISRLA Trigger: AGCTAACCGTGAAATCACCAAGATGCAGATCATGGA...GGGAGTGGGAATGGGTGGGGATGAGAAAGATTCTCCCTGTGTGCAGCATAAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS-3UTR CAA 90 bp | CACAAGTTTAGCACAGCACATCTCTTGTACAAAAATGCACGAAAGCACAAAAGTGCCTGGGGATCTTTCTaGAAGACTCTGGCCAGGAAC | + |
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Preference number: 5 (lower is better) Translates to: HKFSTAHLLYKNARKHKSAWGSF*KTLARN Trigger: GTTCCTGGCCAGAGTCTTCAAGAAAGATCCCCAGGC...ACTTTTGTGCTTTCGTGCATTTTTGTACAAGAGATGTGCTGTGCTAAACTTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS GCA 72 bp | GGCTGCCATAGGGCCTTCGGGAGCGCACGGTGGCCCTaGGAGGTTAGCGGCCAGAGAAGCGGGAGGAGGGAT | + |
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Preference number: 6 (lower is better) Translates to: GCHRAFGSARWP*EVSGQRSGRRD Trigger: ATCCCTCCTCCCGCTTCTCTGGCCGCTAACCTCGCAGGGCCACCGTGCGCTCCCGAAGGCCCTATGGCAGCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS GCA 72 bp | TATCCGTTCTTCGGGCGGTGGCGAGGCCTGTTGGGCTaGCATAGGGCCTTCGGGAGCGCACGGTGGCCCTGC | + |
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Preference number: 6 (lower is better) Translates to: YPFFGRWRGLLG*HRAFGSARWPC Trigger: GCAGGGCCACCGTGCGCTCCCGAAGGCCCTATGGCAGCCCAACAGGCCTCGCCACCGCCCGAAGAACGGATA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS GCA 72 bp | GGAGGAGGGATCCCCACCGGAACGGCATCGCTGTCCTaGATCTCACAGTCGGGGACCTCGGCTGCAAAGTTA | + |
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Preference number: 6 (lower is better) Translates to: GGGIPTGTASLS*ISQSGTSAAKL Trigger: TAACTTTGCAGCCGAGGTCCCCGACTGTGAGATGCAGGACAGCGATGCCGTTCCGGTGGGGATCCCTCCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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| CDS CCA 72 bp | TTTAGGGTCAACATCTTCTATCCGTTCTTCGGGCGGTaGCGAGGCCTGTTGGGCTGCCATAGGGCCTTCGGG | + |
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Preference number: 6 (lower is better) Translates to: FRVNIFYPFFGR*RGLLGCHRAFG Trigger: CCCGAAGGCCCTATGGCAGCCCAACAGGCCTCGCCACCGCCCGAAGAACGGATAGAAGATGTTGACCCTAAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038775.6 |
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