RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NDC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028614

Ensembl transcript IDs: ENSMUST00000030357.15, ENSMUST00000125342.2, ENSMUST00000139560.8, ENSMUST00000149366.2

Found 198 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTCCAGTGCAGGGAACCACGAGAGAGCTGTACTGGCCCTTGGTCATaGTGGCCGCACACCAAGCCACAGCCATTCCCATCGCGGCGTGGA +
Preference number: 1 (lower is better)
Translates to: FQCREPRESCTGPWS*WPHTKPQPFPSRRG
Trigger: TCCACGCCGCGATGGGAATGGCTGTGGCTTGGTGTGCGGCCATCATGACCAAGGGCCAGTACAGCTCTCTCGTGGTTCCCTGCACTGGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
3UTR GCA 90 bp TCACGTCAGCAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTaGTGGCCTCCCTCAAGTCCTCGTTGCATGCGGGAGGAAAGGTGC +
Preference number: 1 (lower is better)
Translates to: SRQQAATSPKPTLLS*WPPSSPRCMREERC
Trigger: GCACCTTTCCTCCCGCATGCAACGAGGACTTGAGGGAGGCCAGCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTGCTGACGTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR CCA 90 bp CGTCAGCAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCTaGCCTCCCTCAAGTCCTCGTTGCATGCGGGAGGAAAGGTGCCTT +
Preference number: 1 (lower is better)
Translates to: RQQAATSPKPTLLSC*PPSSPRCMREERCL
Trigger: AAGGCACCTTTCCTCCCGCATGCAACGAGGACTTGAGGGAGGCCAGCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTGCTGACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR GCA 90 bp CTCACCTTCCAGGGACTGTACAGGTCTGAGGGGATGGCAGTGTCCTaGTCCCCAGCAGGCAGACATGGTGTGGTCAATACCTCAGACACA +
Preference number: 1 (lower is better)
Translates to: LTFQGLYRSEGMAVS*SPAGRHGVVNTSDT
Trigger: TGTGTCTGAGGTATTGACCACACCATGTCTGCCTGCTGGGGAGCAGGACACTGCCATCCCCTCAGACCTGTACAGTCCCTGGAAGGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR CCA 90 bp TCTAAGCTCTCAGTTCCAGTGCAGGGAACCACGAGAGAGCTGTACTaGCCCTTGGTCATGATGGCCGCACACCAAGCCACAGCCATTCCC +
Preference number: 1 (lower is better)
Translates to: SKLSVPVQGTTRELY*PLVMMAAHQATAIP
Trigger: GGGAATGGCTGTGGCTTGGTGTGCGGCCATCATGACCAAGGGCCAGTACAGCTCTCTCGTGGTTCCCTGCACTGGAACTGAGAGCTTAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
3UTR GCA 90 bp CATAAAATGACCGCCTGTACAGTACATCCGGGGCGTACCCGCTCCTaGGGAGAGCCTCTGACATTCACCTGCCTATCTGATGACTATGTG +
Preference number: 1 (lower is better)
Translates to: HKMTACTVHPGRTRS*GEPLTFTCLSDDYV
Trigger: CACATAGTCATCAGATAGGCAGGTGAATGTCAGAGGCTCTCCGCAGGAGCGGGTACGCCCCGGATGTACTGTACAGGCGGTCATTTTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR TCA 90 bp GTGTCCACAAGGCTTCCTGAAGCTCGGGGTGGTTTACTAGAAGCATaGGGCAGCTTGAAGTACTTGTCGACAGCCTCCTGCAGAGTCAAC +
Preference number: 1 (lower is better)
Translates to: VSTRLPEARGGLLEA*GSLKYLSTASCRVN
Trigger: GTTGACTCTGCAGGAGGCTGTCGACAAGTACTTCAAGCTGCCTCATGCTTCTAGTAAACCACCCCGAGCTTCAGGAAGCCTTGTGGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000149366.2
3UTR TCA 90 bp AGGGAACACATGCGCCTCGGTGGCATAGATTTTGAAGAGTATCCATaGGCTATACCAAGTCACCAAGAGGAAGACGCCACACAGCCAGAC +
Preference number: 1 (lower is better)
Translates to: REHMRLGGIDFEEYP*AIPSHQEEDATQPD
Trigger: GTCTGGCTGTGTGGCGTCTTCCTCTTGGTGACTTGGTATAGCTCATGGATACTCTTCAAAATCTATGCCACCGAGGCGCATGTGTTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR TCA 90 bp AAGGCGGCTGAACAGGGAACACATGCGCCTCGGTGGCATAGATTTTaGAGAGTATCCATGAGCTATACCAAGTCACCAAGAGGAAGACGC +
Preference number: 1 (lower is better)
Translates to: KAAEQGTHAPRWHRF*RVSMSYTKSPRGRR
Trigger: GCGTCTTCCTCTTGGTGACTTGGTATAGCTCATGGATACTCTTCAAAATCTATGCCACCGAGGCGCATGTGTTCCCTGTTCAGCCGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR CCA 90 bp CTGAGGGGATGGCAGTGTCCTGCTCCCCAGCAGGCAGACATGGTGTaGTCAATACCTCAGACACAGAACATCCAGAAAGATTCATATTTC +
Preference number: 1 (lower is better)
Translates to: LRGWQCPAPQQADMV*SIPQTQNIQKDSYF
Trigger: GAAATATGAATCTTTCTGGATGTTCTGTGTCTGAGGTATTGACCACACCATGTCTGCCTGCTGGGGAGCAGGACACTGCCATCCCCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR TCA 90 bp AGCTTGAAGTACTTGTCGACAGCCTCCTGCAGAGTCAACAGCGTATaGAGGATAGCTGGGAGTGTGGTCTGGACAACTCCAAATCTATCT +
Preference number: 1 (lower is better)
Translates to: SLKYLSTASCRVNSV*RIAGSVVWTTPNLS
Trigger: AGATAGATTTGGAGTTGTCCAGACCACACTCCCAGCTATCCTTCATACGCTGTTGACTCTGCAGGAGGCTGTCGACAAGTACTTCAAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR TCA 90 bp GTGTCCACAAGGCTTCCTGAAGCTCGGGGTGGTTTACTAGAAGCATaGGGCAGCTTGAAGTACTTGTCGACAGCCTGTATAATAGGAAAC +
Preference number: 1 (lower is better)
Translates to: VSTRLPEARGGLLEA*GSLKYLSTACIIGN
Trigger: GTTTCCTATTATACAGGCTGTCGACAAGTACTTCAAGCTGCCTCATGCTTCTAGTAAACCACCCCGAGCTTCAGGAAGCCTTGTGGACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125342.2
3UTR CCA 90 bp CTGTCTCACTGTCTTACCCTCAGCAGTAACAGAGGCGCAAGGAGATaGGTTAGAAATTGCAGACACTTGTTGATCAGAAGTGTGAGTCCA +
Preference number: 1 (lower is better)
Translates to: LSHCLTLSSNRGARR*VRNCRHLLIRSVSP
Trigger: TGGACTCACACTTCTGATCAACAAGTGTCTGCAATTTCTAACCCATCTCCTTGCGCCTCTGTTACTGCTGAGGGTAAGACAGTGAGACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR TCA 90 bp GAAAGCAAATCTCAATGTTTTGTAGGACGTGTCCACAAGGCTTCCTaGAGCTCGGGGTGGTTTACTAGAAGCATGAGGCAGCTTGAAGTA +
Preference number: 1 (lower is better)
Translates to: ESKSQCFVGRVHKAS*SSGWFTRSMRQLEV
Trigger: TACTTCAAGCTGCCTCATGCTTCTAGTAAACCACCCCGAGCTTCAGGAAGCCTTGTGGACACGTCCTACAAAACATTGAGATTTGCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000149366.2
3UTR TCA 90 bp GGTTGGCTGAGACTGAAAACTTCTTGCCTCCGAGAAGGAGAATATTaGGAAAGCAGCATCAGGTCCTGTAAGGCCAAATACTTTACGATG +
Preference number: 1 (lower is better)
Translates to: GWLRLKTSCLREGEY*ESSIRSCKAKYFTM
Trigger: CATCGTAAAGTATTTGGCCTTACAGGACCTGATGCTGCTTTCTCAATATTCTCCTTCTCGGAGGCAAGAAGTTTTCAGTCTCAGCCAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR GCA 90 bp CTATTCTTTGAACTCCAAGAATTGCTGAAGTCTTTTCTGATGTTCTaGAGATGCCTGCACAGCGTTCAGATGTTCACCAAACGTGGTGGT +
Preference number: 1 (lower is better)
Translates to: LFFELQELLKSFLMF*RCLHSVQMFTKRGG
Trigger: ACCACCACGTTTGGTGAACATCTGAACGCTGTGCAGGCATCTGCAGAACATCAGAAAAGACTTCAGCAATTCTTGGAGTTCAAAGAATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000149366.2
3UTR TCA 90 bp CAGAAAAGGATTTATAAAGGAGGATTTGGCCCAAAGCTGGTCCAATaGATATCTGCCAGCAGGACCTCCCATGTTTCATCTCCAAAGAAA +
Preference number: 1 (lower is better)
Translates to: QKRIYKGGFGPKLVQ*ISASRTSHVSSPKK
Trigger: TTTCTTTGGAGATGAAACATGGGAGGTCCTGCTGGCAGATATTCATTGGACCAGCTTTGGGCCAAATCCTCCTTTATAAATCCTTTTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR TCA 90 bp GCTAACCTCTTAGAGCAGCTGGGAAAGACCACCTGCTTTAACTTCTaGGCTGGCTCCACTCTTTTCAAAAGTAAATTCTACAAACAATTG +
Preference number: 1 (lower is better)
Translates to: ANLLEQLGKTTCFNF*AGSTLFKSKFYKQL
Trigger: CAATTGTTTGTAGAATTTACTTTTGAAAAGAGTGGAGCCAGCTCAGAAGTTAAAGCAGGTGGTCTTTCCCAGCTGCTCTAAGAGGTTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR TCA 90 bp TATCAGCAGGGTAATGAACACAGTTTATATTACTTCACTATTCTTTaGACTCCAAGAATTGCTGAAGTCTTTTCTGATGTTCTGCAGATG +
Preference number: 1 (lower is better)
Translates to: YQQGNEHSLYYFTIL*TPRIAEVFSDVLQM
Trigger: CATCTGCAGAACATCAGAAAAGACTTCAGCAATTCTTGGAGTTCAAAGAATAGTGAAGTAATATAAACTGTGTTCATTACCCTGCTGATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000149366.2
3UTR-3UTR GCA 90 bp AGGGACTGTACAGGTCTGAGGGGATGGCAGTGTCCTGCTCCCCAGCAGGCAGACGGGATGGCAGTGTCCTaGTCCCCAGCAGGCAGACAT +
Preference number: 2 (lower is better)
Translates to: RDCTGLRGWQCPAPQQADGMAVS*SPAGRH
Trigger: ATGTCTGCCTGCTGGGGAGCAGGACACTGCCATCCC...GTCTGCCTGCTGGGGAGCAGGACACTGCCATCCCCTCAGACCTGTACAGTCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR CCA 90 bp GTCATGATGGCCGCACACCAAGCCACAGCCATTCCCATCGCGGCGTGGATGAAGGAGTGCGTGAGCTGCTaGGGATGCAGGATCCGCGCT +
Preference number: 2 (lower is better)
Translates to: VMMAAHQATAIPIAAWMKECVSC*GCRIRA
Trigger: AGCGCGGATCCTGCATCCCCAGCAGCTCACGCACTC...CTTCATCCACGCCGCGATGGGAATGGCTGTGGCTTGGTGTGCGGCCATCATGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
3UTR CAA 90 bp CTCTCAGTTCCAGTGCAGGGAACCACGAGAGAGCTGTACTGGCCCTaGGTCATGATGGCCGCACACCAAGCCACAGCCATTCCCATCGCG +
Preference number: 2 (lower is better)
Translates to: LSVPVQGTTRELYWP*VMMAAHQATAIPIA
Trigger: CGCGATGGGAATGGCTGTGGCTTGGTGTGCGGCCATCATGACCAAGGGCCAGTACAGCTCTCTCGTGGTTCCCTGCACTGGAACTGAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
3UTR-3UTR CCA 90 bp AGGGACTGTACAGGTCTGAGGGGATGGCAGTGTCCTGCTCCCCAGCAGGCAGACCCCAGCAGGCAGACATaGTGTGGTCAATACCTCAGA +
Preference number: 2 (lower is better)
Translates to: RDCTGLRGWQCPAPQQADPSRQT*CGQYLR
Trigger: TCTGAGGTATTGACCACACCATGTCTGCCTGCTGGG...GTCTGCCTGCTGGGGAGCAGGACACTGCCATCCCCTCAGACCTGTACAGTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp TCTCCTGCTGGCCTCCCTCAAGTCCTCGTTGCATGCGGGAGGAAAGGTGCCTTTGTCCACAAGGCTTCCTaGAGCTCGGGGTGGTTTACT +
Preference number: 2 (lower is better)
Translates to: SPAGLPQVLVACGRKGAFVHKAS*SSGWFT
Trigger: AGTAAACCACCCCGAGCTTCAGGAAGCCTTGTGGAC...AAAGGCACCTTTCCTCCCGCATGCAACGAGGACTTGAGGGAGGCCAGCAGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149366.2
3UTR-3UTR GCA 90 bp GACAGCCTCCTGCAGAGTCAACAGCGTATGAAGGATAGCTGGGAGTGTGGTCTGAAGGAGTGCGTGAGCTaGTGGGGATGCAGGATCCGC +
Preference number: 2 (lower is better)
Translates to: DSLLQSQQRMKDSWECGLKECVS*WGCRIR
Trigger: GCGGATCCTGCATCCCCAGCAGCTCACGCACTCCTT...CAGACCACACTCCCAGCTATCCTTCATACGCTGTTGACTCTGCAGGAGGCTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR-3UTR GCA 90 bp CACTCCCTCGAAATAGCAGTCCAATTGTGGGGATGTCCACCTGGTTGGCTGAGAGCGTGGATGAAGGAGTaGGTGAGCTGCTGGGGATGC +
Preference number: 2 (lower is better)
Translates to: HSLEIAVQLWGCPPGWLRAWMKE*VSCWGC
Trigger: GCATCCCCAGCAGCTCACGCACTCCTTCATCCACGC...TCTCAGCCAACCAGGTGGACATCCCCACAATTGGACTGCTATTTCGAGGGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR-3UTR CCA 90 bp TCTCCTGCTGGCCTCCCTCAAGTCCTCGTTGCATGCGGGAGGAAAGGTGCCTTTCCCAGCAGGCAGACATaGTGTGGTCAATACCTCAGA +
Preference number: 2 (lower is better)
Translates to: SPAGLPQVLVACGRKGAFPSRQT*CGQYLR
Trigger: TCTGAGGTATTGACCACACCATGTCTGCCTGCTGGG...AAAGGCACCTTTCCTCCCGCATGCAACGAGGACTTGAGGGAGGCCAGCAGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp TCTCCTGCTGGCCTCCCTCAAGTCCTCGTTGCATGCGGGAGGAAAGGTGCCTTTCTAGCCAGGCTCCTCTaGGTATCTGAAGAAACCAAC +
Preference number: 2 (lower is better)
Translates to: SPAGLPQVLVACGRKGAFLARLL*VSEETN
Trigger: GTTGGTTTCTTCAGATACTCAGAGGAGCCTGGCTAG...AAAGGCACCTTTCCTCCCGCATGCAACGAGGACTTGAGGGAGGCCAGCAGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp AGGCCATCACGTCAGCAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCAGAGTCAACAGCGTATaGAGGATAGCTGGGAGTGTG +
Preference number: 2 (lower is better)
Translates to: RPSRQQAATSPKPTLLSCRVNSV*RIAGSV
Trigger: CACACTCCCAGCTATCCTTCATACGCTGTTGACTCT...GCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTGCTGACGTGATGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp CATCACGTCAGCAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCTGGCAAGCATGAGGCAGCTTaGAGTACTTGTCGACAGCCT +
Preference number: 2 (lower is better)
Translates to: HHVSRLQLHQSQRFSPAGKHEAA*STCRQP
Trigger: AGGCTGTCGACAAGTACTTCAAGCTGCCTCATGCTT...GCCAGCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTGCTGACGTGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149366.2
3UTR-3UTR CCA 90 bp CATCACGTCAGCAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCTGGCCGTATGAAGGATAGCTaGGAGTGTGGTCTGGACAAC +
Preference number: 2 (lower is better)
Translates to: HHVSRLQLHQSQRFSPAGRMKDS*ECGLDN
Trigger: GTTGTCCAGACCACACTCCCAGCTATCCTTCATACG...GCCAGCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTGCTGACGTGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149366.2
3UTR-3UTR CCA 90 bp AGGCCATCACGTCAGCAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCCAGGCAGACATGGTGTaGTCAATACCTCAGACACAG +
Preference number: 2 (lower is better)
Translates to: RPSRQQAATSPKPTLLSCQADMV*SIPQTQ
Trigger: CTGTGTCTGAGGTATTGACCACACCATGTCTGCCTG...GCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTGCTGACGTGATGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp AGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCTGGCCTCCCTCAAGTCACTAGCATCACACAGTaGACTCAGAGACGTTGCTCT +
Preference number: 2 (lower is better)
Translates to: RLQLHQSQRFSPAGLPQVTSITQ*TQRRCS
Trigger: AGAGCAACGTCTCTGAGTTCACTGTGTGATGCTAGT...GACTTGAGGGAGGCCAGCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp GGGATGTCCACCTGGTTGGCTGAGACTGAAAACTTCTTGCCTCCGAGAAGGAGATCATTCAAGCAGGTCTaGGCAGCAGGGCTATCTAAG +
Preference number: 2 (lower is better)
Translates to: GMSTWLAETENFLPPRRRSFKQV*AAGLSK
Trigger: CTTAGATAGCCCTGCTGCTCAGACCTGCTTGAATGA...TCTCCTTCTCGGAGGCAAGAAGTTTTCAGTCTCAGCCAACCAGGTGGACATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR-3UTR TCA 90 bp CCTGTGGCTTTGTATGTCCCACTAGAGACACACACAGAGGGGCTCGGAGCATGGCCTTTTCCCCTCATTTaGAAACCTCTGCCAACTGTT +
Preference number: 2 (lower is better)
Translates to: PVALYVPLETHTEGLGAWPFPLI*KPLPTV
Trigger: AACAGTTGGCAGAGGTTTTCAAATGAGGGGAAAAGG...CCATGCTCCGAGCCCCTCTGTGTGTGTCTCTAGTGGGACATACAAAGCCACAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR CCA 90 bp CCAACGCTTCTCTCCTGCTGGCCTCCCTCAAGTCCTCGTTGCATGCGGGAGGAAAAGAAACCAACACACTaGAAACCCAACTTTCACAAC +
Preference number: 2 (lower is better)
Translates to: PTLLSCWPPSSPRCMREEKKPTH*KPNFHN
Trigger: GTTGTGAAAGTTGGGTTTCCAGTGTGTTGGTTTCTT...TTCCTCCCGCATGCAACGAGGACTTGAGGGAGGCCAGCAGGAGAGAAGCGTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp GTCTCCCGAAATGCTTCAGTCAGAGGCAGCCAGCAAACACAAAAGGCCTATGGCACCTGCTTTAACTTCTaGGCTGGCTCCACTCTTTTC +
Preference number: 2 (lower is better)
Translates to: VSRNASVRGSQQTQKAYGTCFNF*AGSTLF
Trigger: GAAAAGAGTGGAGCCAGCTCAGAAGTTAAAGCAGGT...GCCATAGGCCTTTTGTGTTTGCTGGCTGCCTCTGACTGAAGCATTTCGGGAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp CCAACGCTTCTCTCCTGCTGGCCTCCCTCAAGTCCTCGTTGCATGCGGGAGGAAAAGTCCAAGTTAAAATaGATGCTCTCTTTAGTGAGC +
Preference number: 2 (lower is better)
Translates to: PTLLSCWPPSSPRCMREEKSKLK*MLSLVS
Trigger: GCTCACTAAAGAGAGCATTCATTTTAACTTGGACTT...TTCCTCCCGCATGCAACGAGGACTTGAGGGAGGCCAGCAGGAGAGAAGCGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR GCA 90 bp TCTCCTGCTGGCCTCCCTCAAGTCCTCGTTGCATGCGGGAGGAAAGGTGCCTTTAGTGAGCTACACACATaGCACAGTTCTTTATGGAAA +
Preference number: 2 (lower is better)
Translates to: SPAGLPQVLVACGRKGAFSELHT*HSSLWK
Trigger: TTTCCATAAAGAACTGTGGCATGTGTGTAGCTCACT...AAAGGCACCTTTCCTCCCGCATGCAACGAGGACTTGAGGGAGGCCAGCAGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR CAA 90 bp CCAATTGTGGGGATGTCCACCTGGTTGGCTGAGACTGAAAACTTCTaGCCTCCGAGAAGGAGAATATTGAGAAAGCAGCATCAGGTCCTG +
Preference number: 2 (lower is better)
Translates to: PIVGMSTWLAETENF*PPRRRILRKQHQVL
Trigger: CAGGACCTGATGCTGCTTTCTCAATATTCTCCTTCTCGGAGGCAAGAAGTTTTCAGTCTCAGCCAACCAGGTGGACATCCCCACAATTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR-3UTR TCA 90 bp AGGCCATCACGTCAGCAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCCATTATCAAGTTATATaGGCAAGAGACAGTTCGGCT +
Preference number: 2 (lower is better)
Translates to: RPSRQQAATSPKPTLLSCHYQVI*ARDSSA
Trigger: AGCCGAACTGTCTCTTGCTCATATAACTTGATAATG...GCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTGCTGACGTGATGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR CCA 90 bp ACCAATATACAATGGAGAAAAAGAATGACCCCTCACCTTCCAGGGACTGTACAGACGCTTCTCTCCTGCTaGCCTCCCTCAAGTCCTCGT +
Preference number: 2 (lower is better)
Translates to: TNIQWRKRMTPHLPGTVQTLLSC*PPSSPR
Trigger: ACGAGGACTTGAGGGAGGCCAGCAGGAGAGAAGCGT...CTGTACAGTCCCTGGAAGGTGAGGGGTCATTCTTTTTCTCCATTGTATATTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp CAAATCTCAATGTTTTGTAGGACGTGTCCACAAGGCTTCCTGAAGCTCGGGGTGCGAGAAGGAGAATATTaGGAAAGCAGCATCAGGTCC +
Preference number: 2 (lower is better)
Translates to: QISMFCRTCPQGFLKLGVREGEY*ESSIRS
Trigger: GGACCTGATGCTGCTTTCTCAATATTCTCCTTCTCG...CACCCCGAGCTTCAGGAAGCCTTGTGGACACGTCCTACAAAACATTGAGATTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR-3UTR TCA 90 bp TTTCTGATGTTCTGCAGATGCCTGCACAGCGTTCAGATGTTCACCAAACGTGGTGACGCTGCTACTAAGTaGGACAGACCTTCTAAAGCC +
Preference number: 2 (lower is better)
Translates to: FLMFCRCLHSVQMFTKRGDAATK*DRPSKA
Trigger: GGCTTTAGAAGGTCTGTCTCACTTAGTAGCAGCGTC...ACCACGTTTGGTGAACATCTGAACGCTGTGCAGGCATCTGCAGAACATCAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR-3UTR TCA 90 bp CCCGAAATGCTTCAGTCAGAGGCAGCCAGCAAACACAAAAGGCCTATGGCTTTAACTAGCATCACACAGTaGACTCAGAGACGTTGCTCT +
Preference number: 2 (lower is better)
Translates to: PEMLQSEAASKHKRPMALTSITQ*TQRRCS
Trigger: AGAGCAACGTCTCTGAGTTCACTGTGTGATGCTAGT...TAAAGCCATAGGCCTTTTGTGTTTGCTGGCTGCCTCTGACTGAAGCATTTCGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR GCA 90 bp GTTGTTAATGAAATACAGAAGACTATAGCTATAGCCCATGAATGCTCCGGACAGAAGGAGTGCGTGAGCTaGTGGGGATGCAGGATCCGC +
Preference number: 2 (lower is better)
Translates to: VVNEIQKTIAIAHECSGQKECVS*WGCRIR
Trigger: GCGGATCCTGCATCCCCAGCAGCTCACGCACTCCTT...CTGTCCGGAGCATTCATGGGCTATAGCTATAGTCTTCTGTATTTCATTAACAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
3UTR-3UTR CCA 90 bp CCCGAAATGCTTCAGTCAGAGGCAGCCAGCAAACACAAAAGGCCTATGGCTTTAAAAAGCAAGCAAGCCTaGCTAGGAAACAAGATGCCC +
Preference number: 2 (lower is better)
Translates to: PEMLQSEAASKHKRPMALKSKQA*LGNKMP
Trigger: GGGCATCTTGTTTCCTAGCCAGGCTTGCTTGCTTTT...TAAAGCCATAGGCCTTTTGTGTTTGCTGGCTGCCTCTGACTGAAGCATTTCGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR CAA 90 bp AGTAACAGAGGCGCAAGGAGATGGGTTAGAAATTGCAGACACTTGTaGATCAGAAGTGTGAGTCCACAGCCTCGGTCCTCTTCTTATGAG +
Preference number: 2 (lower is better)
Translates to: SNRGARRWVRNCRHL*IRSVSPQPRSSSYE
Trigger: CTCATAAGAAGAGGACCGAGGCTGTGGACTCACACTTCTGATCAACAAGTGTCTGCAATTTCTAACCCATCTCCTTGCGCCTCTGTTACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR-3UTR TCA 90 bp CCCATAGAGACATTTTTAAGGCTAGCGGGATTCGTTTATAATTTGCCATGTGCTCCTGCGGAGAGCCTCTaGCATTCACCTGCCTATCTG +
Preference number: 2 (lower is better)
Translates to: PIETFLRLAGFVYNLPCAPAESL*HSPAYL
Trigger: CAGATAGGCAGGTGAATGTCAGAGGCTCTCCGCAGG...AGCACATGGCAAATTATAAACGAATCCCGCTAGCCTTAAAAATGTCTCTATGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR GCA 90 bp GACAGCCTCCTGCAGAGTCAACAGCGTATGAAGGATAGCTGGGAGTGTGGTCTGCGCAAAAATTTGTACTaGTGTATAATAGGAAACGGG +
Preference number: 2 (lower is better)
Translates to: DSLLQSQQRMKDSWECGLRKNLY*CIIGNG
Trigger: CCCGTTTCCTATTATACAGCAGTACAAATTTTTGCG...CAGACCACACTCCCAGCTATCCTTCATACGCTGTTGACTCTGCAGGAGGCTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR-3UTR GCA 90 bp TCCCGTCACTCTGCACAAGCAGCCTGTGGCTTTGTATGTCCCACTAGAGACACAAGTGAGCTACACACATaGCACAGTTCTTTATGGAAA +
Preference number: 2 (lower is better)
Translates to: SRHSAQAACGFVCPTRDTSELHT*HSSLWK
Trigger: TTTCCATAAAGAACTGTGGCATGTGTGTAGCTCACT...TGTGTCTCTAGTGGGACATACAAAGCCACAGGCTGCTTGTGCAGAGTGACGGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR CCA 90 bp TCCCGTCACTCTGCACAAGCAGCCTGTGGCTTTGTATGTCCCACTAGAGACACACCCACCAATATACAATaGAGAAAAAGAATGACCCCT +
Preference number: 2 (lower is better)
Translates to: SRHSAQAACGFVCPTRDTPTNIQ*RKRMTP
Trigger: AGGGGTCATTCTTTTTCTCCATTGTATATTGGTGGG...TGTGTCTCTAGTGGGACATACAAAGCCACAGGCTGCTTGTGCAGAGTGACGGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR GCA 90 bp TCCCGTCACTCTGCACAAGCAGCCTGTGGCTTTGTATGTCCCACTAGAGACACAGATTCGTTTATAATTTaGCATGTGCTGGTTGAATGG +
Preference number: 2 (lower is better)
Translates to: SRHSAQAACGFVCPTRDTDSFII*HVLVEW
Trigger: CCATTCAACCAGCACATGGCAAATTATAAACGAATC...TGTGTCTCTAGTGGGACATACAAAGCCACAGGCTGCTTGTGCAGAGTGACGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp CAGCGTATGAAGGATAGCTGGGAGTGTGGTCTGGACAACTCCAAATCTATCTTCATGCATTTGGGCATCTaGAAAAACAGCCTGAATGGA +
Preference number: 2 (lower is better)
Translates to: QRMKDSWECGLDNSKSIFMHLGI*KNSLNG
Trigger: TCCATTCAGGCTGTTTTTTCAGATGCCCAAATGCAT...GAAGATAGATTTGGAGTTGTCCAGACCACACTCCCAGCTATCCTTCATACGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR-3UTR GCA 90 bp CAGCGTATGAAGGATAGCTGGGAGTGTGGTCTGGACAACTCCAAATCTATCTTCATGGAGGCCTCTGGGTaGTTACTGAAAAAGTACATT +
Preference number: 2 (lower is better)
Translates to: QRMKDSWECGLDNSKSIFMEASG*LLKKYI
Trigger: AATGTACTTTTTCAGTAAGCACCCAGAGGCCTCCAT...GAAGATAGATTTGGAGTTGTCCAGACCACACTCCCAGCTATCCTTCATACGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR-3UTR CCA 90 bp GGAAGTGGGAAAGGCAAGAACCTAAACTGGACCAGACATTTCACAGGAGTAAGTGATTTGGCCCAAAGCTaGTCCAATGAATATCTGCCA +
Preference number: 2 (lower is better)
Translates to: GSGKGKNLNWTRHFTGVSDLAQS*SNEYLP
Trigger: TGGCAGATATTCATTGGACCAGCTTTGGGCCAAATC...ACTTACTCCTGTGAAATGTCTGGTCCAGTTTAGGTTCTTGCCTTTCCCACTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR CCA 90 bp AACACTGCTGAAGAAACCAAGCACAGGAACGAGTGGGACTTCTCCATGCCTACTCCCACCAATATACAATaGAGAAAAAGAATGACCCCT +
Preference number: 2 (lower is better)
Translates to: NTAEETKHRNEWDFSMPTPTNIQ*RKRMTP
Trigger: AGGGGTCATTCTTTTTCTCCATTGTATATTGGTGGG...AGTAGGCATGGAGAAGTCCCACTCGTTCCTGTGCTTGGTTTCTTCAGCAGTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp GTTGTTAATGAAATACAGAAGACTATAGCTATAGCCCATGAATGCTCCGGACAGTCATTCAAGCAGGTCTaGGCAGCAGGGCTATCTAAG +
Preference number: 2 (lower is better)
Translates to: VVNEIQKTIAIAHECSGQSFKQV*AAGLSK
Trigger: CTTAGATAGCCCTGCTGCTCAGACCTGCTTGAATGA...CTGTCCGGAGCATTCATGGGCTATAGCTATAGTCTTCTGTATTTCATTAACAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
3UTR-3UTR CCA 90 bp CCAACTTTCACAACACATCAAGAGAACTTCACACACAAGGTAGAGAGGGGACTTGATTTGGCCCAAAGCTaGTCCAATGAATATCTGCCA +
Preference number: 2 (lower is better)
Translates to: PTFTTHQENFTHKVERGLDLAQS*SNEYLP
Trigger: TGGCAGATATTCATTGGACCAGCTTTGGGCCAAATC...AAGTCCCCTCTCTACCTTGTGTGTGAAGTTCTCTTGATGTGTTGTGAAAGTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp GGTGTGGTCAATACCTCAGACACAGAACATCCAGAAAGATTCATATTTCTATCACTAGCCAGGCTCCTCTaGGTATCTGAAGAAACCAAC +
Preference number: 2 (lower is better)
Translates to: GVVNTSDTEHPERFIFLSLARLL*VSEETN
Trigger: GTTGGTTTCTTCAGATACTCAGAGGAGCCTGGCTAG...TGATAGAAATATGAATCTTTCTGGATGTTCTGTGTCTGAGGTATTGACCACACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR CCA 90 bp TCTATCAAATATACTTTCACCCAGAGGAAGTGGGAAAGGCAAGAACCTAAACTGAAAAGCAAGCAAGCCTaGCTAGGAAACAAGATGCCC +
Preference number: 2 (lower is better)
Translates to: SIKYTFTQRKWERQEPKLKSKQA*LGNKMP
Trigger: GGGCATCTTGTTTCCTAGCCAGGCTTGCTTGCTTTT...CAGTTTAGGTTCTTGCCTTTCCCACTTCCTCTGGGTGAAAGTATATTTGATAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR GCA 90 bp AGCAGGCAGACATGGTGTGGTCAATACCTCAGACACAGAACATCCAGAAAGATTGATTCGTTTATAATTTaGCATGTGCTGGTTGAATGG +
Preference number: 2 (lower is better)
Translates to: SRQTWCGQYLRHRTSRKIDSFII*HVLVEW
Trigger: CCATTCAACCAGCACATGGCAAATTATAAACGAATC...AATCTTTCTGGATGTTCTGTGTCTGAGGTATTGACCACACCATGTCTGCCTGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR CAA 90 bp GACTTTAAAGAAAAAGATAACAGAAAAGGATTTATAAAGGAGGATTaGGCCCAAAGCTGGTCCAATGAATATCTGCCAGCAGGACCTCCC +
Preference number: 2 (lower is better)
Translates to: DFKEKDNRKGFIKED*AQSWSNEYLPAGPP
Trigger: GGGAGGTCCTGCTGGCAGATATTCATTGGACCAGCTTTGGGCCAAATCCTCCTTTATAAATCCTTTTCTGTTATCTTTTTCTTTAAAGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp CCAACTTTCACAACACATCAAGAGAACTTCACACACAAGGTAGAGAGGGGACTTACAACATTTTTACTGTaGGTTTTTCTCCACCGTTAC +
Preference number: 2 (lower is better)
Translates to: PTFTTHQENFTHKVERGLTTFLL*VFLHRY
Trigger: GTAACGGTGGAGAAAAACTCACAGTAAAAATGTTGT...AAGTCCCCTCTCTACCTTGTGTGTGAAGTTCTCTTGATGTGTTGTGAAAGTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp AACACAACATTTAGATTTGTCTCCCGAAATGCTTCAGTCAGAGGCAGCCAGCAAACAACATTTTTACTGTaGGTTTTTCTCCACCGTTAC +
Preference number: 2 (lower is better)
Translates to: NTTFRFVSRNASVRGSQQTTFLL*VFLHRY
Trigger: GTAACGGTGGAGAAAAACTCACAGTAAAAATGTTGT...TTGCTGGCTGCCTCTGACTGAAGCATTTCGGGAGACAAATCTAAATGTTGTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR CCA 90 bp AGCAGGCAGACATGGTGTGGTCAATACCTCAGACACAGAACATCCAGAAAGATTTTTGGCTCTAAAGCTTaGCCTACTGTGTTTTTATTA +
Preference number: 2 (lower is better)
Translates to: SRQTWCGQYLRHRTSRKIFGSKA*PTVFLL
Trigger: TAATAAAAACACAGTAGGCCAAGCTTTAGAGCCAAA...AATCTTTCTGGATGTTCTGTGTCTGAGGTATTGACCACACCATGTCTGCCTGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp ACTTCACTATTCTTTGAACTCCAAGAATTGCTGAAGTCTTTTCTGATGTTCTGCGGTTTACTAGAAGCATaGGGCAGCTTGAAGTACTTG +
Preference number: 2 (lower is better)
Translates to: TSLFFELQELLKSFLMFCGLLEA*GSLKYL
Trigger: CAAGTACTTCAAGCTGCCTCATGCTTCTAGTAAACC...GCAGAACATCAGAAAAGACTTCAGCAATTCTTGGAGTTCAAAGAATAGTGAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp AAGCGTCTAATTAGTCCGCTCTCTTCTGATCCAAGAATGCTCAACATTTACTGTCATTATCAAGTTATATaGGCAAGAGACAGTTCGGCT +
Preference number: 2 (lower is better)
Translates to: KRLISPLSSDPRMLNIYCHYQVI*ARDSSA
Trigger: AGCCGAACTGTCTCTTGCTCATATAACTTGATAATG...ACAGTAAATGTTGAGCATTCTTGGATCAGAAGAGAGCGGACTAATTAGACGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR CCA 90 bp TCTATCAAATATACTTTCACCCAGAGGAAGTGGGAAAGGCAAGAACCTAAACTGAAGAAACCAACACACTaGAAACCCAACTTTCACAAC +
Preference number: 2 (lower is better)
Translates to: SIKYTFTQRKWERQEPKLKKPTH*KPNFHN
Trigger: GTTGTGAAAGTTGGGTTTCCAGTGTGTTGGTTTCTT...CAGTTTAGGTTCTTGCCTTTCCCACTTCCTCTGGGTGAAAGTATATTTGATAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR TCA 90 bp ATGTTTCATCTCCAAAGAAATGATCTCATAAGTCATAAAATGACCGCCTGTACACCTTTTCCCCTCATTTaGAAACCTCTGCCAACTGTT +
Preference number: 2 (lower is better)
Translates to: MFHLQRNDLISHKMTACTPFPLI*KPLPTV
Trigger: AACAGTTGGCAGAGGTTTTCAAATGAGGGGAAAAGG...TGTACAGGCGGTCATTTTATGACTTATGAGATCATTTCTTTGGAGATGAAACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR CAA 90 bp ATGAACACAGTTTATATTACTTCACTATTCTTTGAACTCCAAGAATaGCTGAAGTCTTTTCTGATGTTCTGCAGATGCCTGCACAGCGTT +
Preference number: 2 (lower is better)
Translates to: MNTVYITSLFFELQE*LKSFLMFCRCLHSV
Trigger: AACGCTGTGCAGGCATCTGCAGAACATCAGAAAAGACTTCAGCAATTCTTGGAGTTCAAAGAATAGTGAAGTAATATAAACTGTGTTCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000149366.2
3UTR GCA 72 bp GCGGCGTGGATGAAGGAGTGCGTGAGCTGCTGGGGATaGAGGATCCGCGCTATCAGGGCCAGTCTGGAGCCG +
Preference number: 3 (lower is better)
Translates to: AAWMKECVSCWG*RIRAIRASLEP
Trigger: CGGCTCCAGACTGGCCCTGATAGCGCGGATCCTGCATCCCCAGCAGCTCACGCACTCCTTCATCCACGCCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
3UTR CCA 72 bp GCCGCACACCAAGCCACAGCCATTCCCATCGCGGCGTaGATGAAGGAGTGCGTGAGCTGCTGGGGATGCAGG +
Preference number: 3 (lower is better)
Translates to: AAHQATAIPIAA*MKECVSCWGCR
Trigger: CCTGCATCCCCAGCAGCTCACGCACTCCTTCATCCACGCCGCGATGGGAATGGCTGTGGCTTGGTGTGCGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
3UTR GCA 72 bp GCCACAGCCATTCCCATCGCGGCGTGGATGAAGGAGTaGGTGAGCTGCTGGGGATGCAGGATCCGCGCTATC +
Preference number: 3 (lower is better)
Translates to: ATAIPIAAWMKE*VSCWGCRIRAI
Trigger: GATAGCGCGGATCCTGCATCCCCAGCAGCTCACGCACTCCTTCATCCACGCCGCGATGGGAATGGCTGTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
3UTR GCA 72 bp ATTCCCATCGCGGCGTGGATGAAGGAGTGCGTGAGCTaGTGGGGATGCAGGATCCGCGCTATCAGGGCCAGT +
Preference number: 3 (lower is better)
Translates to: IPIAAWMKECVS*WGCRIRAIRAS
Trigger: ACTGGCCCTGATAGCGCGGATCCTGCATCCCCAGCAGCTCACGCACTCCTTCATCCACGCCGCGATGGGAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
3UTR CCA 72 bp CCCTCACCTTCCAGGGACTGTACAGGTCTGAGGGGATaGCAGTGTCCTGCTCCCCAGCAGGCAGACATGGTG +
Preference number: 3 (lower is better)
Translates to: PSPSRDCTGLRG*QCPAPQQADMV
Trigger: CACCATGTCTGCCTGCTGGGGAGCAGGACACTGCCATCCCCTCAGACCTGTACAGTCCCTGGAAGGTGAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR TCA 72 bp AGGGAACCACGAGAGAGCTGTACTGGCCCTTGGTCATaGTGGCCGCACACCAAGCCACAGCCATTCCCATCG +
Preference number: 3 (lower is better)
Translates to: REPRESCTGPWS*WPHTKPQPFPS
Trigger: CGATGGGAATGGCTGTGGCTTGGTGTGCGGCCATCATGACCAAGGGCCAGTACAGCTCTCTCGTGGTTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
3UTR GCA 72 bp CAGGGACTGTACAGGTCTGAGGGGATGGCAGTGTCCTaGTCCCCAGCAGGCAGACATGGTGTGGTCAATACC +
Preference number: 3 (lower is better)
Translates to: QGLYRSEGMAVS*SPAGRHGVVNT
Trigger: GGTATTGACCACACCATGTCTGCCTGCTGGGGAGCAGGACACTGCCATCCCCTCAGACCTGTACAGTCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR GCA 72 bp CAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTaGTGGCCTCCCTCAAGTCCTCGTTGCATGCGGGAG +
Preference number: 3 (lower is better)
Translates to: QAATSPKPTLLS*WPPSSPRCMRE
Trigger: CTCCCGCATGCAACGAGGACTTGAGGGAGGCCAGCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR CCA 72 bp TCAGTTCCAGTGCAGGGAACCACGAGAGAGCTGTACTaGCCCTTGGTCATGATGGCCGCACACCAAGCCACA +
Preference number: 3 (lower is better)
Translates to: SVPVQGTTRELY*PLVMMAAHQAT
Trigger: TGTGGCTTGGTGTGCGGCCATCATGACCAAGGGCCAGTACAGCTCTCTCGTGGTTCCCTGCACTGGAACTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
3UTR CCA 72 bp GCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCTaGCCTCCCTCAAGTCCTCGTTGCATGCGGGAGGAA +
Preference number: 3 (lower is better)
Translates to: AATSPKPTLLSC*PPSSPRCMREE
Trigger: TTCCTCCCGCATGCAACGAGGACTTGAGGGAGGCCAGCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR GCA 72 bp TCTGAGCAGCAGGGCTATCTAAGCTCTCAGTTCCAGTaGAGGGAACCACGAGAGAGCTGTACTGGCCCTTGG +
Preference number: 3 (lower is better)
Translates to: SEQQGYLSSQFQ*REPRESCTGPW
Trigger: CCAAGGGCCAGTACAGCTCTCTCGTGGTTCCCTGCACTGGAACTGAGAGCTTAGATAGCCCTGCTGCTCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
3UTR CCA 72 bp GCTGGGGATGCAGGATCCGCGCTATCAGGGCCAGTCTaGAGCCGGATATGGAGGGCACAACTGTATAGAATT +
Preference number: 3 (lower is better)
Translates to: AGDAGSALSGPV*SRIWRAQLYRI
Trigger: AATTCTATACAGTTGTGCCCTCCATATCCGGCTCCAGACTGGCCCTGATAGCGCGGATCCTGCATCCCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
3UTR CCA 72 bp GGGGATGGCAGTGTCCTGCTCCCCAGCAGGCAGACATaGTGTGGTCAATACCTCAGACACAGAACATCCAGA +
Preference number: 3 (lower is better)
Translates to: GDGSVLLPSRQT*CGQYLRHRTSR
Trigger: TCTGGATGTTCTGTGTCTGAGGTATTGACCACACCATGTCTGCCTGCTGGGGAGCAGGACACTGCCATCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR CAA 90 bp TCGGGGTGGTTTACTAGAAGCATGAGGCAGCTTGAAGTACTTGTCGACAGCCTGGAGCTGTACTGGCCCTaGGTCATGATGGCCGCACAC +
Preference number: 3 (lower is better)
Translates to: SGWFTRSMRQLEVLVDSLELYWP*VMMAAH
Trigger: GTGTGCGGCCATCATGACCAAGGGCCAGTACAGCTC...CAGGCTGTCGACAAGTACTTCAAGCTGCCTCATGCTTCTAGTAAACCACCCCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125342.2
3UTR TCA 72 bp TACATCCGGGGCGTACCCGCTCCTGCGGAGAGCCTCTaGCATTCACCTGCCTATCTGATGACTATGTGCTTT +
Preference number: 3 (lower is better)
Translates to: YIRGVPAPAESL*HSPAYLMTMCF
Trigger: AAAGCACATAGTCATCAGATAGGCAGGTGAATGTCAGAGGCTCTCCGCAGGAGCGGGTACGCCCCGGATGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR TCA 72 bp AGGCTTCCTGAAGCTCGGGGTGGTTTACTAGAAGCATaGGGCAGCTTGAAGTACTTGTCGACAGCCTCCTGC +
Preference number: 3 (lower is better)
Translates to: RLPEARGGLLEA*GSLKYLSTASC
Trigger: GCAGGAGGCTGTCGACAAGTACTTCAAGCTGCCTCATGCTTCTAGTAAACCACCCCGAGCTTCAGGAAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000149366.2
3UTR TCA 72 bp TACTTGTCGACAGCCTCCTGCAGAGTCAACAGCGTATaGAGGATAGCTGGGAGTGTGGTCTGGACAACTCCA +
Preference number: 3 (lower is better)
Translates to: YLSTASCRVNSV*RIAGSVVWTTP
Trigger: TGGAGTTGTCCAGACCACACTCCCAGCTATCCTTCATACGCTGTTGACTCTGCAGGAGGCTGTCGACAAGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000149366.2
3UTR GCA 72 bp CGTACCCGCTCCTGCGGAGAGCCTCTGACATTCACCTaGCTATCTGATGACTATGTGCTTTTGGCTCTAAAG +
Preference number: 3 (lower is better)
Translates to: RTRSCGEPLTFT*LSDDYVLLALK
Trigger: CTTTAGAGCCAAAAGCACATAGTCATCAGATAGGCAGGTGAATGTCAGAGGCTCTCCGCAGGAGCGGGTACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR GCA 72 bp AAGAAACCAAGCACAGGAACGAGTGGGACTTCTCCATaGCTACTCACCAGGATAAGGGTGAGTGTCCCGTCA +
Preference number: 3 (lower is better)
Translates to: KKPSTGTSGTSP*LLTRIRVSVPS
Trigger: TGACGGGACACTCACCCTTATCCTGGTGAGTAGGCATGGAGAAGTCCCACTCGTTCCTGTGCTTGGTTTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR CCA 72 bp TGGCAGTGTCCTGCTCCCCAGCAGGCAGACATGGTGTaGTCAATACCTCAGACACAGAACATCCAGAAAGAT +
Preference number: 3 (lower is better)
Translates to: WQCPAPQQADMV*SIPQTQNIQKD
Trigger: ATCTTTCTGGATGTTCTGTGTCTGAGGTATTGACCACACCATGTCTGCCTGCTGGGGAGCAGGACACTGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR CAA 90 bp ACAGATGATATTCATTCAAGCAGGTCTGAGCAGCAGGGCTATCTAAGCTCTCAGGAGCTGTACTGGCCCTaGGTCATGATGGCCGCACAC +
Preference number: 3 (lower is better)
Translates to: TDDIHSSRSEQQGYLSSQELYWP*VMMAAH
Trigger: GTGTGCGGCCATCATGACCAAGGGCCAGTACAGCTC...CTGAGAGCTTAGATAGCCCTGCTGCTCAGACCTGCTTGAATGAATATCATCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
3UTR-3UTR CAA 90 bp CAAATCTCAATGTTTTGTAGGACGTGTCCACAAGGCTTCCTGAAGCTCGGGGTGGAAATAGCAGTCCAATaGTGGGGATGTCCACCTGGT +
Preference number: 3 (lower is better)
Translates to: QISMFCRTCPQGFLKLGVEIAVQ*WGCPPG
Trigger: ACCAGGTGGACATCCCCACAATTGGACTGCTATTTC...CACCCCGAGCTTCAGGAAGCCTTGTGGACACGTCCTACAAAACATTGAGATTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR TCA 72 bp TCTCAATGTTTTGTAGGACGTGTCCACAAGGCTTCCTaGAGCTCGGGGTGGTTTACTAGAAGCATGAGGCAG +
Preference number: 3 (lower is better)
Translates to: SQCFVGRVHKAS*SSGWFTRSMRQ
Trigger: CTGCCTCATGCTTCTAGTAAACCACCCCGAGCTTCAGGAAGCCTTGTGGACACGTCCTACAAAACATTGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000149366.2
3UTR TCA 72 bp AGGCTTCCTGAAGCTCGGGGTGGTTTACTAGAAGCATaGGGCAGCTTGAAGTACTTGTCGACAGCCTGTATA +
Preference number: 3 (lower is better)
Translates to: RLPEARGGLLEA*GSLKYLSTACI
Trigger: TATACAGGCTGTCGACAAGTACTTCAAGCTGCCTCATGCTTCTAGTAAACCACCCCGAGCTTCAGGAAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125342.2
3UTR CCA 72 bp AGCCTCCTGCAGAGTCAACAGCGTATGAAGGATAGCTaGGAGTGTGGTCTGGACAACTCCAAATCTATCTTC +
Preference number: 3 (lower is better)
Translates to: SLLQSQQRMKDS*ECGLDNSKSIF
Trigger: GAAGATAGATTTGGAGTTGTCCAGACCACACTCCCAGCTATCCTTCATACGCTGTTGACTCTGCAGGAGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR CCA 72 bp CAAAACACTGCTGAAGAAACCAAGCACAGGAACGAGTaGGACTTCTCCATGCCTACTCACCAGGATAAGGGT +
Preference number: 3 (lower is better)
Translates to: QNTAEETKHRNE*DFSMPTHQDKG
Trigger: ACCCTTATCCTGGTGAGTAGGCATGGAGAAGTCCCACTCGTTCCTGTGCTTGGTTTCTTCAGCAGTGTTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR TCA 72 bp ATGCGCCTCGGTGGCATAGATTTTGAAGAGTATCCATaGGCTATACCAAGTCACCAAGAGGAAGACGCCACA +
Preference number: 3 (lower is better)
Translates to: MRLGGIDFEEYP*AIPSHQEEDAT
Trigger: TGTGGCGTCTTCCTCTTGGTGACTTGGTATAGCTCATGGATACTCTTCAAAATCTATGCCACCGAGGCGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR GCA 72 bp AGGAGGATTTGGCCCAAAGCTGGTCCAATGAATATCTaGCAGCAGGACCTCCCATGTTTCATCTCCAAAGAA +
Preference number: 3 (lower is better)
Translates to: RRIWPKAGPMNI*QQDLPCFISKE
Trigger: TTCTTTGGAGATGAAACATGGGAGGTCCTGCTGGCAGATATTCATTGGACCAGCTTTGGGCCAAATCCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR TCA 72 bp GAACAGGGAACACATGCGCCTCGGTGGCATAGATTTTaGAGAGTATCCATGAGCTATACCAAGTCACCAAGA +
Preference number: 3 (lower is better)
Translates to: EQGTHAPRWHRF*RVSMSYTKSPR
Trigger: TCTTGGTGACTTGGTATAGCTCATGGATACTCTTCAAAATCTATGCCACCGAGGCGCATGTGTTCCCTGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR TCA 72 bp AAAGAGTGCCCACCAATATACAATGGAGAAAAAGAATaGCCCCTCACCTTCCAGGGACTGTACAGGTCTGAG +
Preference number: 3 (lower is better)
Translates to: KECPPIYNGEKE*PLTFQGLYRSE
Trigger: CTCAGACCTGTACAGTCCCTGGAAGGTGAGGGGTCATTCTTTTTCTCCATTGTATATTGGTGGGCACTCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR CCA 72 bp AGATTCAAACACTCCCTCGAAATAGCAGTCCAATTGTaGGGATGTCCACCTGGTTGGCTGAGACTGAAAACT +
Preference number: 3 (lower is better)
Translates to: RFKHSLEIAVQL*GCPPGWLRLKT
Trigger: AGTTTTCAGTCTCAGCCAACCAGGTGGACATCCCCACAATTGGACTGCTATTTCGAGGGAGTGTTTGAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR CCA 72 bp TTACATCAAGAATTCCAGCCATTCGGTTCACTACGCTaGAGCCAAACGGGGTCCCAAAAGGACTTGAAACAT +
Preference number: 3 (lower is better)
Translates to: LHQEFQPFGSLR*SQTGSQKDLKH
Trigger: ATGTTTCAAGTCCTTTTGGGACCCCGTTTGGCTCCAGCGTAGTGAACCGAATGGCTGGAATTCTTGATGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR-3UTR CAA 90 bp GGAAGTGGGAAAGGCAAGAACCTAAACTGGACCAGACATTTCACAGGAGTAAGTGATGACTATGTGCTTTaGGCTCTAAAGCTTGGCCTA +
Preference number: 3 (lower is better)
Translates to: GSGKGKNLNWTRHFTGVSDDYVL*ALKLGL
Trigger: TAGGCCAAGCTTTAGAGCCAAAAGCACATAGTCATC...ACTTACTCCTGTGAAATGTCTGGTCCAGTTTAGGTTCTTGCCTTTCCCACTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR GCA 72 bp CAAGAATTGCTGAAGTCTTTTCTGATGTTCTGCAGATaGCTGCACAGCGTTCAGATGTTCACCAAACGTGGT +
Preference number: 3 (lower is better)
Translates to: QELLKSFLMFCR*LHSVQMFTKRG
Trigger: ACCACGTTTGGTGAACATCTGAACGCTGTGCAGGCATCTGCAGAACATCAGAAAAGACTTCAGCAATTCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000149366.2
3UTR CCA 72 bp AGAAAAGGATTTATAAAGGAGGATTTGGCCCAAAGCTaGTCCAATGAATATCTGCCAGCAGGACCTCCCATG +
Preference number: 3 (lower is better)
Translates to: RKGFIKEDLAQS*SNEYLPAGPPM
Trigger: CATGGGAGGTCCTGCTGGCAGATATTCATTGGACCAGCTTTGGGCCAAATCCTCCTTTATAAATCCTTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR TCA 72 bp CTAGCGGGATTCGTTTATAATTTGCCATGTGCTGGTTaGATGGGCAGTAGATCTGGGGCTAAAATACACTAC +
Preference number: 3 (lower is better)
Translates to: LAGFVYNLPCAG*MGSRSGAKIHY
Trigger: GTAGTGTATTTTAGCCCCAGATCTACTGCCCATTCAACCAGCACATGGCAAATTATAAACGAATCCCGCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR GCA 72 bp GAACTCCAAGAATTGCTGAAGTCTTTTCTGATGTTCTaGAGATGCCTGCACAGCGTTCAGATGTTCACCAAA +
Preference number: 3 (lower is better)
Translates to: ELQELLKSFLMF*RCLHSVQMFTK
Trigger: TTTGGTGAACATCTGAACGCTGTGCAGGCATCTGCAGAACATCAGAAAAGACTTCAGCAATTCTTGGAGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000149366.2
3UTR CCA 72 bp CCAGGCTCCTCTGAGTATCTGAAGAAACCAACACACTaGAAACCCAACTTTCACAACACATCAAGAGAACTT +
Preference number: 3 (lower is better)
Translates to: PGSSEYLKKPTH*KPNFHNTSREL
Trigger: AAGTTCTCTTGATGTGTTGTGAAAGTTGGGTTTCCAGTGTGTTGGTTTCTTCAGATACTCAGAGGAGCCTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR TCA 72 bp TTAGAGCAGCTGGGAAAGACCACCTGCTTTAACTTCTaGGCTGGCTCCACTCTTTTCAAAAGTAAATTCTAC +
Preference number: 3 (lower is better)
Translates to: LEQLGKTTCFNF*AGSTLFKSKFY
Trigger: GTAGAATTTACTTTTGAAAAGAGTGGAGCCAGCTCAGAAGTTAAAGCAGGTGGTCTTTCCCAGCTGCTCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR CCA 72 bp CGGGATTCGTTTATAATTTGCCATGTGCTGGTTGAATaGGCAGTAGATCTGGGGCTAAAATACACTACTGTA +
Preference number: 3 (lower is better)
Translates to: RDSFIICHVLVE*AVDLGLKYTTV
Trigger: TACAGTAGTGTATTTTAGCCCCAGATCTACTGCCCATTCAACCAGCACATGGCAAATTATAAACGAATCCCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR TCA 72 bp GACCAGACATTTCACAGGAGTAAGTCCAAGTTAAAATaGATGCTCTCTTTAGTGAGCTACACACATGCCACA +
Preference number: 3 (lower is better)
Translates to: DQTFHRSKSKLK*MLSLVSYTHAT
Trigger: TGTGGCATGTGTGTAGCTCACTAAAGAGAGCATTCATTTTAACTTGGACTTACTCCTGTGAAATGTCTGGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR TCA 72 bp CTACAAACAATTGTGAATAATCATTATCAAGTTATATaGGCAAGAGACAGTTCGGCTGCCATAGACGCTCCT +
Preference number: 3 (lower is better)
Translates to: LQTIVNNHYQVI*ARDSSAAIDAP
Trigger: AGGAGCGTCTATGGCAGCCGAACTGTCTCTTGCTCATATAACTTGATAATGATTATTCACAATTGTTTGTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR-3UTR CAA 90 bp ATGCAGAAATTTCTGACCATGAACAGGGATTCCACACAGCTATGTTTAACTAGTCGGAAACGCAAAAATTaGTACTGCTGTATAATAGGA +
Preference number: 3 (lower is better)
Translates to: MQKFLTMNRDSTQLCLTSRKRKN*YCCIIG
Trigger: TCCTATTATACAGCAGTACAAATTTTTGCGTTTCCG...ACTAGTTAAACATAGCTGTGTGGAATCCCTGTTCATGGTCAGAAATTTCTGCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
3UTR TCA 72 bp ACTGGGTACAGAAAAGGCAGTTTTCGGTTATTCTGCTaGGAATTTCTTTCCATGATTTCTCCCATTAAAGTA +
Preference number: 3 (lower is better)
Translates to: TGYRKGSFRLFC*EFLSMISPIKV
Trigger: TACTTTAATGGGAGAAATCATGGAAAGAAATTCTCAGCAGAATAACCGAAAACTGCCTTTTCTGTACCCAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000030357.15
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CCA 90 bp CCATCACGTCAGCAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCTGGGAGTGCGTGAGCTGCTaGGGATGCAGGATCCGCGCT +
Preference number: 4 (lower is better)
Translates to: PSRQQAATSPKPTLLSCWECVSC*GCRIRA
Trigger: AGCGCGGATCCTGCATCCCCAGCAGCTCACGCACTC...CCAGCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTGCTGACGTGATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp AGCTGCTGGGGATGCAGGATCCGCGCTATCAGGGCCAGTCTGGAGCCGGATATGGCCAGCAGCAGGAGGTaGAAGATGACTTGGGAACTA +
Preference number: 4 (lower is better)
Translates to: SCWGCRIRAIRASLEPDMASSRR*KMTWEL
Trigger: TAGTTCCCAAGTCATCTTTCACCTCCTGCTGCTGGC...CATATCCGGCTCCAGACTGGCCCTGATAGCGCGGATCCTGCATCCCCAGCAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
CDS-3UTR GCA 90 bp AGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCTGGCCTCCCTCAAGTCGCGTGGATGAAGGAGTaGGTGAGCTGCTGGGGATGC +
Preference number: 4 (lower is better)
Translates to: RLQLHQSQRFSPAGLPQVAWMKE*VSCWGC
Trigger: GCATCCCCAGCAGCTCACGCACTCCTTCATCCACGC...GACTTGAGGGAGGCCAGCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp AGGGACTGTACAGGTCTGAGGGGATGGCAGTGTCCTGCTCCCCAGCAGGCAGACAGAGTCAACAGCGTATaGAGGATAGCTGGGAGTGTG +
Preference number: 4 (lower is better)
Translates to: RDCTGLRGWQCPAPQQADRVNSV*RIAGSV
Trigger: CACACTCCCAGCTATCCTTCATACGCTGTTGACTCT...GTCTGCCTGCTGGGGAGCAGGACACTGCCATCCCCTCAGACCTGTACAGTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139560.8
CDS-3UTR TCA 90 bp TCTCCTGCTGGCCTCCCTCAAGTCCTCGTTGCATGCGGGAGGAAAGGTGCCTTTTCGGTCCTCTTCTTATaGGCTGAGGACTTTGGGGAG +
Preference number: 4 (lower is better)
Translates to: SPAGLPQVLVACGRKGAFSVLFL*AEDFGE
Trigger: CTCCCCAAAGTCCTCAGCTCATAAGAAGAGGACCGA...AAAGGCACCTTTCCTCCCGCATGCAACGAGGACTTGAGGGAGGCCAGCAGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR CAA 72 bp GAGTGTCCCGTCACTCTGCACAAGCAGCCTGTGGCTTaGTATGTCCCACTAGAGACACACACAGAGGGGCTC +
Preference number: 4 (lower is better)
Translates to: ECPVTLHKQPVA*YVPLETHTEGL
Trigger: GAGCCCCTCTGTGTGTGTCTCTAGTGGGACATACAAAGCCACAGGCTGCTTGTGCAGAGTGACGGGACACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp AGGCCATCACGTCAGCAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCAAGCATGAGGCAGCTTaGAGTACTTGTCGACAGCCT +
Preference number: 4 (lower is better)
Translates to: RPSRQQAATSPKPTLLSCKHEAA*STCRQP
Trigger: AGGCTGTCGACAAGTACTTCAAGCTGCCTCATGCTT...GCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTGCTGACGTGATGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139560.8
CDS-3UTR GCA 90 bp ACAAGATGCCCTCATCCTCCACTAGCATCACACAGTGAACTCAGAGACGTTGCTAAGGAGTGCGTGAGCTaGTGGGGATGCAGGATCCGC +
Preference number: 4 (lower is better)
Translates to: TRCPHPPLASHSELRDVAKECVS*WGCRIR
Trigger: GCGGATCCTGCATCCCCAGCAGCTCACGCACTCCTT...AGCAACGTCTCTGAGTTCACTGTGTGATGCTAGTGGAGGATGAGGGCATCTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp TCCATGAGCTATACCAAGTCACCAAGAGGAAGACGCCACACAGCCAGACGTGGTGCCAGCAGCAGGAGGTaGAAGATGACTTGGGAACTA +
Preference number: 4 (lower is better)
Translates to: SMSYTKSPRGRRHTARRGASSRR*KMTWEL
Trigger: TAGTTCCCAAGTCATCTTTCACCTCCTGCTGCTGGC...ACCACGTCTGGCTGTGTGGCGTCTTCCTCTTGGTGACTTGGTATAGCTCATGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
CDS-3UTR TCA 90 bp CTCACCTTCCAGGGACTGTACAGGTCTGAGGGGATGGCAGTGTCCTGCTCCCCACTAGGTTTTGGAGTCTaGAAAGCAGTTTCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: LTFQGLYRSEGMAVSCSPLGFGV*KAVSSA
Trigger: TGCAGAAGAAACTGCTTTTCAGACTCCAAAACCTAG...TGGGGAGCAGGACACTGCCATCCCCTCAGACCTGTACAGTCCCTGGAAGGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp TCTCCTGCTGGCCTCCCTCAAGTCCTCGTTGCATGCGGGAGGAAAGGTGCCTTTGGTTTACTAGAAGCATaGGGCAGCTTGAAGTACTTG +
Preference number: 4 (lower is better)
Translates to: SPAGLPQVLVACGRKGAFGLLEA*GSLKYL
Trigger: CAAGTACTTCAAGCTGCCTCATGCTTCTAGTAAACC...AAAGGCACCTTTCCTCCCGCATGCAACGAGGACTTGAGGGAGGCCAGCAGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139560.8
CDS-3UTR GCA 90 bp CCAACGCTTCTCTCCTGCTGGCCTCCCTCAAGTCCTCGTTGCATGCGGGAGGAAAGCAGTGCTAATCCATaGTTTGGGAATATGGCCAAA +
Preference number: 4 (lower is better)
Translates to: PTLLSCWPPSSPRCMREESSANP*FGNMAK
Trigger: TTTGGCCATATTCCCAAAGCATGGATTAGCACTGCT...TTCCTCCCGCATGCAACGAGGACTTGAGGGAGGCCAGCAGGAGAGAAGCGTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp AACACTGCTGAAGAAACCAAGCACAGGAACGAGTGGGACTTCTCCATGCCTACTGCCTGCTCATCTGTGTaGAGGTCCAGAGCAGTGCTA +
Preference number: 4 (lower is better)
Translates to: NTAEETKHRNEWDFSMPTACSSV*RSRAVL
Trigger: TAGCACTGCTCTGGACCTTCACACAGATGAGCAGGC...AGTAGGCATGGAGAAGTCCCACTCGTTCCTGTGCTTGGTTTCTTCAGCAGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR GCA 90 bp GTTTTTATTAGCCAGTTAGCACAGCAGAGGCTGCTCCCATGTGAAGACAGACTAAAGGAGTGCGTGAGCTaGTGGGGATGCAGGATCCGC +
Preference number: 4 (lower is better)
Translates to: VFISQLAQQRLLPCEDRLKECVS*WGCRIR
Trigger: GCGGATCCTGCATCCCCAGCAGCTCACGCACTCCTT...TAGTCTGTCTTCACATGGGAGCAGCCTCTGCTGTGCTAACTGGCTAATAAAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CCA 90 bp AGGCCATCACGTCAGCAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCCAGAGCTCAGTTTCTTaGGTTCCACTGAGTATGATG +
Preference number: 4 (lower is better)
Translates to: RPSRQQAATSPKPTLLSCQSSVS*VPLSMM
Trigger: CATCATACTCAGTGGAACCCAAGAAACTGAGCTCTG...GCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTGCTGACGTGATGGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp CATCACGTCAGCAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCTGGCCTAGGTTTTGGAGTCTaGAAAGCAGTTTCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: HHVSRLQLHQSQRFSPAGLGFGV*KAVSSA
Trigger: TGCAGAAGAAACTGCTTTTCAGACTCCAAAACCTAG...GCCAGCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTGCTGACGTGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR GCA 90 bp CTCACCTTCCAGGGACTGTACAGGTCTGAGGGGATGGCAGTGTCCTGCTCCCCACGCAAAAATTTGTACTaGTGTATAATAGGAAACGGG +
Preference number: 4 (lower is better)
Translates to: LTFQGLYRSEGMAVSCSPRKNLY*CIIGNG
Trigger: CCCGTTTCCTATTATACAGCAGTACAAATTTTTGCG...TGGGGAGCAGGACACTGCCATCCCCTCAGACCTGTACAGTCCCTGGAAGGTGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR GCA 90 bp CTCACCTTCCAGGGACTGTACAGGTCTGAGGGGATGGCAGTGTCCTGCTCCCCAAGATGGGTTAGAAATTaGAGACACTTGTTGATCAGA +
Preference number: 4 (lower is better)
Translates to: LTFQGLYRSEGMAVSCSPRWVRN*RHLLIR
Trigger: TCTGATCAACAAGTGTCTGCAATTTCTAACCCATCT...TGGGGAGCAGGACACTGCCATCCCCTCAGACCTGTACAGTCCCTGGAAGGTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR CAA 72 bp AGAGGCGCAAGGAGATGGGTTAGAAATTGCAGACACTaGTTGATCAGAAGTGTGAGTCCACAGCCTCGGTCC +
Preference number: 4 (lower is better)
Translates to: RGARRWVRNCRH*LIRSVSPQPRS
Trigger: GGACCGAGGCTGTGGACTCACACTTCTGATCAACAAGTGTCTGCAATTTCTAACCCATCTCCTTGCGCCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
CDS-3UTR TCA 90 bp AACACTGCTGAAGAAACCAAGCACAGGAACGAGTGGGACTTCTCCATGCCTACTTCATTCAAGCAGGTCTaGGCAGCAGGGCTATCTAAG +
Preference number: 4 (lower is better)
Translates to: NTAEETKHRNEWDFSMPTSFKQV*AAGLSK
Trigger: CTTAGATAGCCCTGCTGCTCAGACCTGCTTGAATGA...AGTAGGCATGGAGAAGTCCCACTCGTTCCTGTGCTTGGTTTCTTCAGCAGTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp AGCTGGGAAAGACCACCTGCTTTAACTTCTGAGCTGGCTCCACTCTTTTCAAAAGCCTGCTCATCTGTGTaGAGGTCCAGAGCAGTGCTA +
Preference number: 4 (lower is better)
Translates to: SWERPPALTSELAPLFSKACSSV*RSRAVL
Trigger: TAGCACTGCTCTGGACCTTCACACAGATGAGCAGGC...TTTTGAAAAGAGTGGAGCCAGCTCAGAAGTTAAAGCAGGTGGTCTTTCCCAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CCA 90 bp AAAGGATTTATAAAGGAGGATTTGGCCCAAAGCTGGTCCAATGAATATCTGCCAGAGTGCGTGAGCTGCTaGGGATGCAGGATCCGCGCT +
Preference number: 4 (lower is better)
Translates to: KGFIKEDLAQSWSNEYLPECVSC*GCRIRA
Trigger: AGCGCGGATCCTGCATCCCCAGCAGCTCACGCACTC...TGGCAGATATTCATTGGACCAGCTTTGGGCCAAATCCTCCTTTATAAATCCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CCA 90 bp GTCTCCCGAAATGCTTCAGTCAGAGGCAGCCAGCAAACACAAAAGGCCTATGGCCAGAGCTCAGTTTCTTaGGTTCCACTGAGTATGATG +
Preference number: 4 (lower is better)
Translates to: VSRNASVRGSQQTQKAYGQSSVS*VPLSMM
Trigger: CATCATACTCAGTGGAACCCAAGAAACTGAGCTCTG...GCCATAGGCCTTTTGTGTTTGCTGGCTGCCTCTGACTGAAGCATTTCGGGAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp TTTGTCTCCCGAAATGCTTCAGTCAGAGGCAGCCAGCAAACACAAAAGGCCTATGACGCTGCTACTAAGTaGGACAGACCTTCTAAAGCC +
Preference number: 4 (lower is better)
Translates to: FVSRNASVRGSQQTQKAYDAATK*DRPSKA
Trigger: GGCTTTAGAAGGTCTGTCTCACTTAGTAGCAGCGTC...ATAGGCCTTTTGTGTTTGCTGGCTGCCTCTGACTGAAGCATTTCGGGAGACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR GCA 90 bp AGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCTGGCCTCCCTCAAGTCAACTATAGAAGTCATTaGAAGAATCTGACAGCCACT +
Preference number: 4 (lower is better)
Translates to: RLQLHQSQRFSPAGLPQVNYRSH*KNLTAT
Trigger: AGTGGCTGTCAGATTCTTGCAATGACTTCTATAGTT...GACTTGAGGGAGGCCAGCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CCA 90 bp AACACAACATTTAGATTTGTCTCCCGAAATGCTTCAGTCAGAGGCAGCCAGCAATTCGGTTCACTACGCTaGAGCCAAACGGGGTCCCAA +
Preference number: 4 (lower is better)
Translates to: NTTFRFVSRNASVRGSQQFGSLR*SQTGSQ
Trigger: TTGGGACCCCGTTTGGCTCCAGCGTAGTGAACCGAA...TTGCTGGCTGCCTCTGACTGAAGCATTTCGGGAGACAAATCTAAATGTTGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CCA 90 bp ACAAGATGCCCTCATCCTCCACTAGCATCACACAGTGAACTCAGAGACGTTGCTGCTGGGAGTGTGGTCTaGACAACTCCAAATCTATCT +
Preference number: 4 (lower is better)
Translates to: TRCPHPPLASHSELRDVAAGSVV*TTPNLS
Trigger: AGATAGATTTGGAGTTGTCCAGACCACACTCCCAGC...AGCAACGTCTCTGAGTTCACTGTGTGATGCTAGTGGAGGATGAGGGCATCTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139560.8
3UTR CAA 72 bp GGGATGTCCACCTGGTTGGCTGAGACTGAAAACTTCTaGCCTCCGAGAAGGAGAATATTGAGAAAGCAGCAT +
Preference number: 4 (lower is better)
Translates to: GMSTWLAETENF*PPRRRILRKQH
Trigger: ATGCTGCTTTCTCAATATTCTCCTTCTCGGAGGCAAGAAGTTTTCAGTCTCAGCCAACCAGGTGGACATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
CDS-3UTR TCA 90 bp ACCAATATACAATGGAGAAAAAGAATGACCCCTCACCTTCCAGGGACTGTACAGAGGAAGGCATTCATCTaGGGCTTCTGCAAAAGGCGG +
Preference number: 4 (lower is better)
Translates to: TNIQWRKRMTPHLPGTVQRKAFI*GFCKRR
Trigger: CCGCCTTTTGCAGAAGCCTCAGATGAATGCCTTCCT...CTGTACAGTCCCTGGAAGGTGAGGGGTCATTCTTTTTCTCCATTGTATATTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp CCAACTTTCACAACACATCAAGAGAACTTCACACACAAGGTAGAGAGGGGACTTTCGGTCCTCTTCTTATaGGCTGAGGACTTTGGGGAG +
Preference number: 4 (lower is better)
Translates to: PTFTTHQENFTHKVERGLSVLFL*AEDFGE
Trigger: CTCCCCAAAGTCCTCAGCTCATAAGAAGAGGACCGA...AAGTCCCCTCTCTACCTTGTGTGTGAAGTTCTCTTGATGTGTTGTGAAAGTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR GCA 90 bp GACAGCCTCCTGCAGAGTCAACAGCGTATGAAGGATAGCTGGGAGTGTGGTCTGAACTATAGAAGTCATTaGAAGAATCTGACAGCCACT +
Preference number: 4 (lower is better)
Translates to: DSLLQSQQRMKDSWECGLNYRSH*KNLTAT
Trigger: AGTGGCTGTCAGATTCTTGCAATGACTTCTATAGTT...CAGACCACACTCCCAGCTATCCTTCATACGCTGTTGACTCTGCAGGAGGCTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149366.2
CDS-3UTR GCA 90 bp CCTGTGGCTTTGTATGTCCCACTAGAGACACACACAGAGGGGCTCGGAGCATGGTCTAAAGCCCAAATATaGATTTGGGCATCTGAAAAA +
Preference number: 4 (lower is better)
Translates to: PVALYVPLETHTEGLGAWSKAQI*IWASEK
Trigger: TTTTTCAGATGCCCAAATGCATATTTGGGCTTTAGA...CCATGCTCCGAGCCCCTCTGTGTGTGTCTCTAGTGGGACATACAAAGCCACAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR GCA 90 bp AGGCCATCACGTCAGCAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCTCTAAAGCCCAAATATaGATTTGGGCATCTGAAAAA +
Preference number: 4 (lower is better)
Translates to: RPSRQQAATSPKPTLLSCSKAQI*IWASEK
Trigger: TTTTTCAGATGCCCAAATGCATATTTGGGCTTTAGA...GCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTGCTGACGTGATGGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CCA 90 bp TTTGTCTCCCGAAATGCTTCAGTCAGAGGCAGCCAGCAAACACAAAAGGCCTATGGATGTCCACCTGGTTaGCTGAGACTGAAAACTTCT +
Preference number: 4 (lower is better)
Translates to: FVSRNASVRGSQQTQKAYGCPPG*LRLKTS
Trigger: AGAAGTTTTCAGTCTCAGCCAACCAGGTGGACATCC...ATAGGCCTTTTGTGTTTGCTGGCTGCCTCTGACTGAAGCATTTCGGGAGACAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CCA 90 bp GTTTTTATTAGCCAGTTAGCACAGCAGAGGCTGCTCCCATGTGAAGACAGACTAATAGCAGTCCAATTGTaGGGATGTCCACCTGGTTGG +
Preference number: 4 (lower is better)
Translates to: VFISQLAQQRLLPCEDRLIAVQL*GCPPGW
Trigger: CCAACCAGGTGGACATCCCCACAATTGGACTGCTAT...TAGTCTGTCTTCACATGGGAGCAGCCTCTGCTGTGCTAACTGGCTAATAAAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp AGCTGGGAAAGACCACCTGCTTTAACTTCTGAGCTGGCTCCACTCTTTTCAAAATATAGCTATAGCCCATaGATGCTCCGGACAGTAGGA +
Preference number: 4 (lower is better)
Translates to: SWERPPALTSELAPLFSKYSYSP*MLRTVG
Trigger: TCCTACTGTCCGGAGCATTCATGGGCTATAGCTATA...TTTTGAAAAGAGTGGAGCCAGCTCAGAAGTTAAAGCAGGTGGTCTTTCCCAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp GTTTTTATTAGCCAGTTAGCACAGCAGAGGCTGCTCCCATGTGAAGACAGACTATATAGCTATAGCCCATaGATGCTCCGGACAGTAGGA +
Preference number: 4 (lower is better)
Translates to: VFISQLAQQRLLPCEDRLYSYSP*MLRTVG
Trigger: TCCTACTGTCCGGAGCATTCATGGGCTATAGCTATA...TAGTCTGTCTTCACATGGGAGCAGCCTCTGCTGTGCTAACTGGCTAATAAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp AGCTGGGAAAGACCACCTGCTTTAACTTCTGAGCTGGCTCCACTCTTTTCAAAACGAGAAGGAGAATATTaGGAAAGCAGCATCAGGTCC +
Preference number: 4 (lower is better)
Translates to: SWERPPALTSELAPLFSKREGEY*ESSIRS
Trigger: GGACCTGATGCTGCTTTCTCAATATTCTCCTTCTCG...TTTTGAAAAGAGTGGAGCCAGCTCAGAAGTTAAAGCAGGTGGTCTTTCCCAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp AGACAAACCGTAGGGAAAGGGAAGTTTCCAGGTCTCCTTTTCCCCTCATTTGAACGAGAAGGAGAATATTaGGAAAGCAGCATCAGGTCC +
Preference number: 4 (lower is better)
Translates to: RQTVGKGKFPGLLFPSFEREGEY*ESSIRS
Trigger: GGACCTGATGCTGCTTTCTCAATATTCTCCTTCTCG...TTCAAATGAGGGGAAAAGGAGACCTGGAAACTTCCCTTTCCCTACGGTTTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR GCA 90 bp GTCTCCCGAAATGCTTCAGTCAGAGGCAGCCAGCAAACACAAAAGGCCTATGGCAGATGGGTTAGAAATTaGAGACACTTGTTGATCAGA +
Preference number: 4 (lower is better)
Translates to: VSRNASVRGSQQTQKAYGRWVRN*RHLLIR
Trigger: TCTGATCAACAAGTGTCTGCAATTTCTAACCCATCT...GCCATAGGCCTTTTGTGTTTGCTGGCTGCCTCTGACTGAAGCATTTCGGGAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR GCA 90 bp AGCAGGCAGACATGGTGTGGTCAATACCTCAGACACAGAACATCCAGAAAGATTTGTTCTGCAGATGCCTaGACAGCGTTCAGATGTTCA +
Preference number: 4 (lower is better)
Translates to: SRQTWCGQYLRHRTSRKICSADA*TAFRCS
Trigger: TGAACATCTGAACGCTGTGCAGGCATCTGCAGAACA...AATCTTTCTGGATGTTCTGTGTCTGAGGTATTGACCACACCATGTCTGCCTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139560.8
CDS-3UTR CCA 90 bp TCTATCAAATATACTTTCACCCAGAGGAAGTGGGAAAGGCAAGAACCTAAACTGTTCGGTTCACTACGCTaGAGCCAAACGGGGTCCCAA +
Preference number: 4 (lower is better)
Translates to: SIKYTFTQRKWERQEPKLFGSLR*SQTGSQ
Trigger: TTGGGACCCCGTTTGGCTCCAGCGTAGTGAACCGAA...CAGTTTAGGTTCTTGCCTTTCCCACTTCCTCTGGGTGAAAGTATATTTGATAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CCA 90 bp AACACAACATTTAGATTTGTCTCCCGAAATGCTTCAGTCAGAGGCAGCCAGCAACGTATGAAGGATAGCTaGGAGTGTGGTCTGGACAAC +
Preference number: 4 (lower is better)
Translates to: NTTFRFVSRNASVRGSQQRMKDS*ECGLDN
Trigger: GTTGTCCAGACCACACTCCCAGCTATCCTTCATACG...TTGCTGGCTGCCTCTGACTGAAGCATTTCGGGAGACAAATCTAAATGTTGTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139560.8
CDS-3UTR TCA 90 bp TCTATCAAATATACTTTCACCCAGAGGAAGTGGGAAAGGCAAGAACCTAAACTGGCCAGCAGCAGGAGGTaGAAGATGACTTGGGAACTA +
Preference number: 4 (lower is better)
Translates to: SIKYTFTQRKWERQEPKLASSRR*KMTWEL
Trigger: TAGTTCCCAAGTCATCTTTCACCTCCTGCTGCTGGC...CAGTTTAGGTTCTTGCCTTTCCCACTTCCTCTGGGTGAAAGTATATTTGATAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp AAAGGATTTATAAAGGAGGATTTGGCCCAAAGCTGGTCCAATGAATATCTGCCAGCCAGCAGCAGGAGGTaGAAGATGACTTGGGAACTA +
Preference number: 4 (lower is better)
Translates to: KGFIKEDLAQSWSNEYLPASSRR*KMTWEL
Trigger: TAGTTCCCAAGTCATCTTTCACCTCCTGCTGCTGGC...TGGCAGATATTCATTGGACCAGCTTTGGGCCAAATCCTCCTTTATAAATCCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp ACAAGATGCCCTCATCCTCCACTAGCATCACACAGTGAACTCAGAGACGTTGCTTTTGAAGAGTATCCATaGGCTATACCAAGTCACCAA +
Preference number: 4 (lower is better)
Translates to: TRCPHPPLASHSELRDVAFEEYP*AIPSHQ
Trigger: TTGGTGACTTGGTATAGCTCATGGATACTCTTCAAA...AGCAACGTCTCTGAGTTCACTGTGTGATGCTAGTGGAGGATGAGGGCATCTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR GCA 90 bp ACAAGATGCCCTCATCCTCCACTAGCATCACACAGTGAACTCAGAGACGTTGCTAGACTGAAAACTTCTTaGCTCCGAGAAGGAGAATAT +
Preference number: 4 (lower is better)
Translates to: TRCPHPPLASHSELRDVARLKTS*LREGEY
Trigger: ATATTCTCCTTCTCGGAGGCAAGAAGTTTTCAGTCT...AGCAACGTCTCTGAGTTCACTGTGTGATGCTAGTGGAGGATGAGGGCATCTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR GCA 90 bp ACTTCACTATTCTTTGAACTCCAAGAATTGCTGAAGTCTTTTCTGATGTTCTGCATGGAGGCCTCTGGGTaGCTCAGCAGTAACAGAGGC +
Preference number: 4 (lower is better)
Translates to: TSLFFELQELLKSFLMFCMEASG*LSSNRG
Trigger: GCCTCTGTTACTGCTGAGGCACCCAGAGGCCTCCAT...GCAGAACATCAGAAAAGACTTCAGCAATTCTTGGAGTTCAAAGAATAGTGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149366.2
CDS-3UTR CCA 90 bp AACACAACATTTAGATTTGTCTCCCGAAATGCTTCAGTCAGAGGCAGCCAGCAAGGATGTCCACCTGGTTaGCTGAGACTGAAAACTTCT +
Preference number: 4 (lower is better)
Translates to: NTTFRFVSRNASVRGSQQGCPPG*LRLKTS
Trigger: AGAAGTTTTCAGTCTCAGCCAACCAGGTGGACATCC...TTGCTGGCTGCCTCTGACTGAAGCATTTCGGGAGACAAATCTAAATGTTGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR CAA 72 bp AAAAGATTCAAACACTCCCTCGAAATAGCAGTCCAATaGTGGGGATGTCCACCTGGTTGGCTGAGACTGAAA +
Preference number: 4 (lower is better)
Translates to: KRFKHSLEIAVQ*WGCPPGWLRLK
Trigger: TTTCAGTCTCAGCCAACCAGGTGGACATCCCCACAATTGGACTGCTATTTCGAGGGAGTGTTTGAATCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030357.15
CDS-3UTR TCA 90 bp AGACAAACCGTAGGGAAAGGGAAGTTTCCAGGTCTCCTTTTCCCCTCATTTGAAATGCATTTGGGCATCTaGAAAAACAGCCTGAATGGA +
Preference number: 4 (lower is better)
Translates to: RQTVGKGKFPGLLFPSFEMHLGI*KNSLNG
Trigger: TCCATTCAGGCTGTTTTTTCAGATGCCCAAATGCAT...TTCAAATGAGGGGAAAAGGAGACCTGGAAACTTCCCTTTCCCTACGGTTTGTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp CCCATAGAGACATTTTTAAGGCTAGCGGGATTCGTTTATAATTTGCCATGTGCTGACGCTGCTACTAAGTaGGACAGACCTTCTAAAGCC +
Preference number: 4 (lower is better)
Translates to: PIETFLRLAGFVYNLPCADAATK*DRPSKA
Trigger: GGCTTTAGAAGGTCTGTCTCACTTAGTAGCAGCGTC...AGCACATGGCAAATTATAAACGAATCCCGCTAGCCTTAAAAATGTCTCTATGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp CCCGAAATGCTTCAGTCAGAGGCAGCCAGCAAACACAAAAGGCCTATGGCTTTATATCAGCACCCGTTTTaGCAAGAAATTCTTAATCTG +
Preference number: 4 (lower is better)
Translates to: PEMLQSEAASKHKRPMALYQHPF*QEILNL
Trigger: CAGATTAAGAATTTCTTGTCAAAACGGGTGCTGATA...TAAAGCCATAGGCCTTTTGTGTTTGCTGGCTGCCTCTGACTGAAGCATTTCGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139560.8
CDS-3UTR TCA 90 bp GTTTTTATTAGCCAGTTAGCACAGCAGAGGCTGCTCCCATGTGAAGACAGACTATTTTCAGGGAGGCCCTaGAAGCAAATCTCAATGTTT +
Preference number: 4 (lower is better)
Translates to: VFISQLAQQRLLPCEDRLFSGRP*KQISMF
Trigger: AAACATTGAGATTTGCTTTCAGGGCCTCCCTGAAAA...TAGTCTGTCTTCACATGGGAGCAGCCTCTGCTGTGCTAACTGGCTAATAAAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139560.8
CDS-3UTR GCA 90 bp CCCATAGAGACATTTTTAAGGCTAGCGGGATTCGTTTATAATTTGCCATGTGCTCTGATGTTCTGCAGATaGCTGCACAGCGTTCAGATG +
Preference number: 4 (lower is better)
Translates to: PIETFLRLAGFVYNLPCALMFCR*LHSVQM
Trigger: CATCTGAACGCTGTGCAGGCATCTGCAGAACATCAG...AGCACATGGCAAATTATAAACGAATCCCGCTAGCCTTAAAAATGTCTCTATGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000139560.8
3UTR CAA 72 bp ATGCCACAGTTCTTTATGGAAACACAACATTTAGATTaGTCTCCCGAAATGCTTCAGTCAGAGGCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: MPQFFMETQHLD*SPEMLQSEAAS
Trigger: GCTGGCTGCCTCTGACTGAAGCATTTCGGGAGACAAATCTAAATGTTGTGTTTCCATAAAGAACTGTGGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp TACTGTGTTTTTATTAGCCAGTTAGCACAGCAGAGGCTGCTCCCATGTGAAGACTTTGAAGAGTATCCATaGGCTATACCAAGTCACCAA +
Preference number: 4 (lower is better)
Translates to: YCVFISQLAQQRLLPCEDFEEYP*AIPSHQ
Trigger: TTGGTGACTTGGTATAGCTCATGGATACTCTTCAAA...GTCTTCACATGGGAGCAGCCTCTGCTGTGCTAACTGGCTAATAAAAACACAGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp ATGTTTCATCTCCAAAGAAATGATCTCATAAGTCATAAAATGACCGCCTGTACAGTCCACAAGGCTTCCTaGAGCTCGGGGTGGTTTACT +
Preference number: 4 (lower is better)
Translates to: MFHLQRNDLISHKMTACTVHKAS*SSGWFT
Trigger: AGTAAACCACCCCGAGCTTCAGGAAGCCTTGTGGAC...TGTACAGGCGGTCATTTTATGACTTATGAGATCATTTCTTTGGAGATGAAACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139560.8
CDS-3UTR GCA 90 bp ACCAATATACAATGGAGAAAAAGAATGACCCCTCACCTTCCAGGGACTGTACAGAGCAGTGCTAATCCATaGTTTGGGAATATGGCCAAA +
Preference number: 4 (lower is better)
Translates to: TNIQWRKRMTPHLPGTVQSSANP*FGNMAK
Trigger: TTTGGCCATATTCCCAAAGCATGGATTAGCACTGCT...CTGTACAGTCCCTGGAAGGTGAGGGGTCATTCTTTTTCTCCATTGTATATTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR GCA 90 bp AGCAGGCAGACATGGTGTGGTCAATACCTCAGACACAGAACATCCAGAAAGATTAGACTGAAAACTTCTTaGCTCCGAGAAGGAGAATAT +
Preference number: 4 (lower is better)
Translates to: SRQTWCGQYLRHRTSRKIRLKTS*LREGEY
Trigger: ATATTCTCCTTCTCGGAGGCAAGAAGTTTTCAGTCT...AATCTTTCTGGATGTTCTGTGTCTGAGGTATTGACCACACCATGTCTGCCTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR GCA 90 bp ACCAATATACAATGGAGAAAAAGAATGACCCCTCACCTTCCAGGGACTGTACAGATGGAGGCCTCTGGGTaGTTACTGAAAAAGTACATT +
Preference number: 4 (lower is better)
Translates to: TNIQWRKRMTPHLPGTVQMEASG*LLKKYI
Trigger: AATGTACTTTTTCAGTAAGCACCCAGAGGCCTCCAT...CTGTACAGTCCCTGGAAGGTGAGGGGTCATTCTTTTTCTCCATTGTATATTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000139560.8
CDS-3UTR TCA 90 bp ATGTTTCATCTCCAAAGAAATGATCTCATAAGTCATAAAATGACCGCCTGTACAAGGAAGGCATTCATCTaGGGCTTCTGCAAAAGGCGG +
Preference number: 4 (lower is better)
Translates to: MFHLQRNDLISHKMTACTRKAFI*GFCKRR
Trigger: CCGCCTTTTGCAGAAGCCTCAGATGAATGCCTTCCT...TGTACAGGCGGTCATTTTATGACTTATGAGATCATTTCTTTGGAGATGAAACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR TCA 90 bp CCCATAGAGACATTTTTAAGGCTAGCGGGATTCGTTTATAATTTGCCATGTGCTATGCATTTGGGCATCTaGAAAAACAGCCTGAATGGA +
Preference number: 4 (lower is better)
Translates to: PIETFLRLAGFVYNLPCAMHLGI*KNSLNG
Trigger: TCCATTCAGGCTGTTTTTTCAGATGCCCAAATGCAT...AGCACATGGCAAATTATAAACGAATCCCGCTAGCCTTAAAAATGTCTCTATGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR GCA 90 bp ACCAATATACAATGGAGAAAAAGAATGACCCCTCACCTTCCAGGGACTGTACAGCGCAAAAATTTGTACTaGTGTATAATAGGAAACGGG +
Preference number: 4 (lower is better)
Translates to: TNIQWRKRMTPHLPGTVQRKNLY*CIIGNG
Trigger: CCCGTTTCCTATTATACAGCAGTACAAATTTTTGCG...CTGTACAGTCCCTGGAAGGTGAGGGGTCATTCTTTTTCTCCATTGTATATTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CCA 90 bp GGTGTGGTCAATACCTCAGACACAGAACATCCAGAAAGATTCATATTTCTATCACTGAATGGAGGCCTCTaGGTGCTTACTGAAAAAGTA +
Preference number: 4 (lower is better)
Translates to: GVVNTSDTEHPERFIFLSLNGGL*VLTEKV
Trigger: TACTTTTTCAGTAAGCACCCAGAGGCCTCCATTCAG...TGATAGAAATATGAATCTTTCTGGATGTTCTGTGTCTGAGGTATTGACCACACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000139560.8
CDS-3UTR TCA 90 bp GGTGTGGTCAATACCTCAGACACAGAACATCCAGAAAGATTCATATTTCTATCACCTCTGGGTGCTTACTaGAAAAGTACATTATCAGCA +
Preference number: 4 (lower is better)
Translates to: GVVNTSDTEHPERFIFLSPLGAY*KSTLSA
Trigger: TGCTGATAATGTACTTTTTCAGTAAGCACCCAGAGG...TGATAGAAATATGAATCTTTCTGGATGTTCTGTGTCTGAGGTATTGACCACACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139560.8
3UTR CAA 72 bp GAAAAAGATAACAGAAAAGGATTTATAAAGGAGGATTaGGCCCAAAGCTGGTCCAATGAATATCTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: EKDNRKGFIKED*AQSWSNEYLPA
Trigger: TGCTGGCAGATATTCATTGGACCAGCTTTGGGCCAAATCCTCCTTTATAAATCCTTTTCTGTTATCTTTTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
3UTR CAA 72 bp GTTTATATTACTTCACTATTCTTTGAACTCCAAGAATaGCTGAAGTCTTTTCTGATGTTCTGCAGATGCCTG +
Preference number: 4 (lower is better)
Translates to: VYITSLFFELQE*LKSFLMFCRCL
Trigger: CAGGCATCTGCAGAACATCAGAAAAGACTTCAGCAATTCTTGGAGTTCAAAGAATAGTGAAGTAATATAAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000149366.2
CDS-3UTR CAA 90 bp GTCTCCCGAAATGCTTCAGTCAGAGGCAGCCAGCAAACACAAAAGGCCTATGGCGAGCTGTACTGGCCCTaGGTCATGATGGCCGCACAC +
Preference number: 5 (lower is better)
Translates to: VSRNASVRGSQQTQKAYGELYWP*VMMAAH
Trigger: GTGTGCGGCCATCATGACCAAGGGCCAGTACAGCTC...GCCATAGGCCTTTTGTGTTTGCTGGCTGCCTCTGACTGAAGCATTTCGGGAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS GCA 90 bp GGGTGCCTCAGCAGTAACAGAGGCGCAAGGAGATGGGTTAGAAATTaGAGACACTTGTTGATCAGAAGTGTGAGTCCACAGCCTCGGTCC +
Preference number: 5 (lower is better)
Translates to: GCLSSNRGARRWVRN*RHLLIRSVSPQPRS
Trigger: GGACCGAGGCTGTGGACTCACACTTCTGATCAACAAGTGTCTGCAATTTCTAACCCATCTCCTTGCGCCTCTGTTACTGCTGAGGCACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149366.2
CDS-3UTR CAA 90 bp CCATCACGTCAGCAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCTGGTGTAGCAGCAGCTTCTaGGTAGAGAACCAGTTTCTG +
Preference number: 5 (lower is better)
Translates to: PSRQQAATSPKPTLLSCWCSSSF*VENQFL
Trigger: CAGAAACTGGTTCTCTACCAAGAAGCTGCTGCTACA...CCAGCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTGCTGACGTGATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CAA 90 bp CATCACGTCAGCAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCTGGCGAGACTGAAAACTTCTaGCCTCCGAGAAGGAGAATA +
Preference number: 5 (lower is better)
Translates to: HHVSRLQLHQSQRFSPAGETENF*PPRRRI
Trigger: TATTCTCCTTCTCGGAGGCAAGAAGTTTTCAGTCTC...GCCAGCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTGCTGACGTGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS CCA 90 bp ATGGAGGCCTCTGGGTGCCTCAGCAGTAACAGAGGCGCAAGGAGATaGGTTAGAAATTGCAGACACTTGTTGATCAGAAGTGTGAGTCCA +
Preference number: 5 (lower is better)
Translates to: MEASGCLSSNRGARR*VRNCRHLLIRSVSP
Trigger: TGGACTCACACTTCTGATCAACAAGTGTCTGCAATTTCTAACCCATCTCCTTGCGCCTCTGTTACTGCTGAGGCACCCAGAGGCCTCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149366.2
CDS-3UTR CAA 90 bp TCTGCAGATGCCTGCACAGCGTTCAGATGTTCACCAAACGTGGTGGTTATACGGGAAATAGCAGTCCAATaGTGGGGATGTCCACCTGGT +
Preference number: 5 (lower is better)
Translates to: SADACTAFRCSPNVVVIREIAVQ*WGCPPG
Trigger: ACCAGGTGGACATCCCCACAATTGGACTGCTATTTC...CCGTATAACCACCACGTTTGGTGAACATCTGAACGCTGTGCAGGCATCTGCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149366.2
CDS-3UTR CAA 90 bp ATAAGGGTGAGTGTCCCGTCACTCTGCACAAGCAGCCTGTGGCTTTGTATGTCCGCAGAGCTCAGTTTCTaGGGTTCCACTGAGTATGAT +
Preference number: 5 (lower is better)
Translates to: IRVSVPSLCTSSLWLCMSAELSF*GSTEYD
Trigger: ATCATACTCAGTGGAACCCAAGAAACTGAGCTCTGC...GGACATACAAAGCCACAGGCTGCTTGTGCAGAGTGACGGGACACTCACCCTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CAA 90 bp CCATCACGTCAGCAGGCTGCAACTTCACCAAAGCCAACGCTTCTCTCCTGCTGGCGGAAACGCAAAAATTaGTACTGCTGTATAATAGGA +
Preference number: 5 (lower is better)
Translates to: PSRQQAATSPKPTLLSCWRKRKN*YCCIIG
Trigger: TCCTATTATACAGCAGTACAAATTTTTGCGTTTCCG...CCAGCAGGAGAGAAGCGTTGGCTTTGGTGAAGTTGCAGCCTGCTGACGTGATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CAA 90 bp CCCGAAATGCTTCAGTCAGAGGCAGCCAGCAAACACAAAAGGCCTATGGCTTTAGCAGAGCTCAGTTTCTaGGGTTCCACTGAGTATGAT +
Preference number: 5 (lower is better)
Translates to: PEMLQSEAASKHKRPMALAELSF*GSTEYD
Trigger: ATCATACTCAGTGGAACCCAAGAAACTGAGCTCTGC...TAAAGCCATAGGCCTTTTGTGTTTGCTGGCTGCCTCTGACTGAAGCATTTCGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CAA 90 bp TTTGTCTCCCGAAATGCTTCAGTCAGAGGCAGCCAGCAAACACAAAAGGCCTATCGGAAACGCAAAAATTaGTACTGCTGTATAATAGGA +
Preference number: 5 (lower is better)
Translates to: FVSRNASVRGSQQTQKAYRKRKN*YCCIIG
Trigger: TCCTATTATACAGCAGTACAAATTTTTGCGTTTCCG...ATAGGCCTTTTGTGTTTGCTGGCTGCCTCTGACTGAAGCATTTCGGGAGACAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CAA 90 bp TCTATCAAATATACTTTCACCCAGAGGAAGTGGGAAAGGCAAGAACCTAAACTGTGTAGCAGCAGCTTCTaGGTAGAGAACCAGTTTCTG +
Preference number: 5 (lower is better)
Translates to: SIKYTFTQRKWERQEPKLCSSSF*VENQFL
Trigger: CAGAAACTGGTTCTCTACCAAGAAGCTGCTGCTACA...CAGTTTAGGTTCTTGCCTTTCCCACTTCCTCTGGGTGAAAGTATATTTGATAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CAA 90 bp ATGTTTCATCTCCAAAGAAATGATCTCATAAGTCATAAAATGACCGCCTGTACAGAAATAGCAGTCCAATaGTGGGGATGTCCACCTGGT +
Preference number: 5 (lower is better)
Translates to: MFHLQRNDLISHKMTACTEIAVQ*WGCPPG
Trigger: ACCAGGTGGACATCCCCACAATTGGACTGCTATTTC...TGTACAGGCGGTCATTTTATGACTTATGAGATCATTTCTTTGGAGATGAAACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2
CDS-3UTR CAA 90 bp ACTTCACTATTCTTTGAACTCCAAGAATTGCTGAAGTCTTTTCTGATGTTCTGCGAGACTGAAAACTTCTaGCCTCCGAGAAGGAGAATA +
Preference number: 5 (lower is better)
Translates to: TSLFFELQELLKSFLMFCETENF*PPRRRI
Trigger: TATTCTCCTTCTCGGAGGCAAGAAGTTTTCAGTCTC...GCAGAACATCAGAAAAGACTTCAGCAATTCTTGGAGTTCAAAGAATAGTGAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149366.2
CDS CAA 72 bp AATGACCACGGCCAGCAGCAGGAGGTGAAAGATGACTaGGGAACTATAGAAGTCATTGCAAGAATGCGCCAA +
Preference number: 6 (lower is better)
Translates to: NDHGQQQEVKDD*GTIEVIARMRQ
Trigger: TTGGCGCATTCTTGCAATGACTTCTATAGTTCCCAAGTCATCTTTCACCTCCTGCTGCTGGCCGTGGTCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030357.15
ENSMUST00000125342.2
CDS CCA 72 bp AAGTCATTGCAAGAATCTGACAGCCACTGTATAGGGTaGAATAAATTGATGCTGCTTAAGACTATAAAGGCT +
Preference number: 6 (lower is better)
Translates to: KSLQESDSHCIG*NKLMLLKTIKA
Trigger: AGCCTTTATAGTCTTAAGCAGCATCAATTTATTCCACCCTATACAGTGGCTGTCAGATTCTTGCAATGACTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139560.8
ENSMUST00000149366.2