Pregenerated sensors for NCR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062524Ensembl transcript IDs: ENSMUST00000006792.6, ENSMUST00000126417.3
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GACATGCACACACAATATAAAATATTGAGGATGGAGCTGGAGATATaGTTTGTAGTTAAGAGCACTTGTTGCTCCTCCAGACAACTTGAG | + |
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Preference number: 1 (lower is better) Translates to: DMHTQYKILRMELEI*FVVKSTCCSSRQLE Trigger: CTCAAGTTGTCTGGAGGAGCAACAAGTGCTCTTAACTACAAACCATATCTCCAGCTCCATCCTCAATATTTTATATTGTGTGTGCATGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| 3UTR-3UTR GCA 90 bp | ATGGAGCTGGAGATATGGTTTGTAGTTAAGAGCACTTGTTGCTCCTCCAGACAACAGTGTCCTTTAGAATaGTTTGCCAAACTTGGTAAC | + |
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Preference number: 2 (lower is better) Translates to: MELEIWFVVKSTCCSSRQQCPLE*FAKLGN Trigger: GTTACCAAGTTTGGCAAAGCATTCTAAAGGACACTG...TTGTCTGGAGGAGCAACAAGTGCTCTTAACTACAAACCATATCTCCAGCTCCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| 3UTR-3UTR GCA 90 bp | AGACCTAAAGTAGGAAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTACAGTGTCCTTTAGAATaGTTTGCCAAACTTGGTAAC | + |
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Preference number: 2 (lower is better) Translates to: RPKVGRKYSHGHHIGTKLQCPLE*FAKLGN Trigger: GTTACCAAGTTTGGCAAAGCATTCTAAAGGACACTG...TAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTTCCTACTTTAGGTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| 3UTR-3UTR CAA 90 bp | AGACCTAAAGTAGGAAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTAAATGCTTTGCCAAACTaGGTAACACTCCTACCCCTT | + |
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Preference number: 3 (lower is better) Translates to: RPKVGRKYSHGHHIGTKLNALPN*VTLLPL Trigger: AAGGGGTAGGAGTGTTACCAAGTTTGGCAAAGCATT...TAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTTCCTACTTTAGGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| 3UTR-3UTR CAA 90 bp | AGGAAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAAATGCTTTGCCAAACTaGGTAACACTCCTACCCCTT | + |
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Preference number: 3 (lower is better) Translates to: RKEIFPWPSHWNEVISRKNALPN*VTLLPL Trigger: AAGGGGTAGGAGTGTTACCAAGTTTGGCAAAGCATT...TTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTTCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| 3UTR TCA 72 bp | TTGCCAAACTTGGTAACACTCCTACCCCTTCATTTCTaGAAAGATCTCTTTCTTTATCCAGGGTACAGCATA | + |
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Preference number: 3 (lower is better) Translates to: LPNLVTLLPLHF*KDLFLYPGYSI Trigger: TATGCTGTACCCTGGATAAAGAAAGAGATCTTTTCAGAAATGAAGGGGTAGGAGTGTTACCAAGTTTGGCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| 3UTR CCA 72 bp | ACACAATATAAAATATTGAGGATGGAGCTGGAGATATaGTTTGTAGTTAAGAGCACTTGTTGCTCCTCCAGA | + |
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Preference number: 3 (lower is better) Translates to: TQYKILRMELEI*FVVKSTCCSSR Trigger: TCTGGAGGAGCAACAAGTGCTCTTAACTACAAACCATATCTCCAGCTCCATCCTCAATATTTTATATTGTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR GCA 90 bp | ATGGAGCTGGAGATATGGTTTGTAGTTAAGAGCACTTGTTGCTCCTCCAGACAAAGTAGGGTCGGTAGGTaGAAGGCTGCTGTTCTCAAC | + |
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Preference number: 4 (lower is better) Translates to: MELEIWFVVKSTCCSSRQSRVGR*KAAVLN Trigger: GTTGAGAACAGCAGCCTTGCACCTACCGACCCTACT...TTGTCTGGAGGAGCAACAAGTGCTCTTAACTACAAACCATATCTCCAGCTCCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CCA 90 bp | TTGAGGATGGAGCTGGAGATATGGTTTGTAGTTAAGAGCACTTGTTGCTCCTCCGTGTCACAGGCTCACTaGGAAAAGACCATGCATAGT | + |
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Preference number: 4 (lower is better) Translates to: LRMELEIWFVVKSTCCSSVSQAH*EKTMHS Trigger: ACTATGCATGGTCTTTTCCCAGTGAGCCTGTGACAC...GGAGGAGCAACAAGTGCTCTTAACTACAAACCATATCTCCAGCTCCATCCTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR TCA 90 bp | GGCTTCCTCTCACAGTGTCCTTTAGAATGCTTTGCCAAACTTGGTAACACTCCTCCAGACCAATTCGAATaGGATTCTGGGTTGTGTGAT | + |
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Preference number: 4 (lower is better) Translates to: GFLSQCPLECFAKLGNTPPDQFE*DSGLCD Trigger: ATCACACAACCCAGAATCTCATTCGAATTGGTCTGG...AGGAGTGTTACCAAGTTTGGCAAAGCATTCTAAAGGACACTGTGAGAGGAAGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR GCA 90 bp | CATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAGACCAGAGTGATCAAAAGTAGGGTCGGTAGGTaGAAGGCTGCTGTTCTCAAC | + |
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Preference number: 4 (lower is better) Translates to: HGHHIGTKLFLGKTRVIKSRVGR*KAAVLN Trigger: GTTGAGAACAGCAGCCTTGCACCTACCGACCCTACT...TTTGATCACTCTGGTCTTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR TCA 90 bp | ATGGAGCTGGAGATATGGTTTGTAGTTAAGAGCACTTGTTGCTCCTCCAGACAATGGATCCTCTCTCCTTaGGCAGAAAGAATTTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: MELEIWFVVKSTCCSSRQWILSP*AERICL Trigger: CAAGCAAATTCTTTCTGCTCAAGGAGAGAGGATCCA...TTGTCTGGAGGAGCAACAAGTGCTCTTAACTACAAACCATATCTCCAGCTCCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR GCA 90 bp | GGCTTCCTCTCACAGTGTCCTTTAGAATGCTTTGCCAAACTTGGTAACACTCCTGAGTTATCAGGATTATaGATGCCAGACCAATTCGAA | + |
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Preference number: 4 (lower is better) Translates to: GFLSQCPLECFAKLGNTPELSGL*MPDQFE Trigger: TTCGAATTGGTCTGGCATGCATAATCCTGATAACTC...AGGAGTGTTACCAAGTTTGGCAAAGCATTCTAAAGGACACTGTGAGAGGAAGCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CCA 90 bp | GGAAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAGGATAAACCCAGAGGTTaGGTGTGTCATACAGACCAG | + |
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Preference number: 4 (lower is better) Translates to: GRKYSHGHHIGTKLFLGKDKPRG*VCHTDQ Trigger: CTGGTCTGTATGACACACCCAACCTCTGGGTTTATC...CTTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CCA 90 bp | CATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAGACCAGAGTGATCAAAGATAAACCCAGAGGTTaGGTGTGTCATACAGACCAG | + |
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Preference number: 4 (lower is better) Translates to: HGHHIGTKLFLGKTRVIKDKPRG*VCHTDQ Trigger: CTGGTCTGTATGACACACCCAACCTCTGGGTTTATC...TTTGATCACTCTGGTCTTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CCA 90 bp | TTAGCAGAGACAGAGAGGTCTGTTAGAGGCTTCCTCTCACAGTGTCCTTTAGAAGAAAGAATTTGCTTGTaGCAGTCTTCAGTTGGCAAA | + |
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Preference number: 4 (lower is better) Translates to: LAETERSVRGFLSQCPLEERICL*QSSVGK Trigger: TTTGCCAACTGAAGACTGCCACAAGCAAATTCTTTC...TTCTAAAGGACACTGTGAGAGGAAGCCTCTAACAGACCTCTCTGTCTCTGCTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CCA 90 bp | TTGAGGATGGAGCTGGAGATATGGTTTGTAGTTAAGAGCACTTGTTGCTCCTCCTATTTATTCTGGATGTaGTTGGATCCTCTCTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: LRMELEIWFVVKSTCCSSYLFWM*LDPLSL Trigger: CAAGGAGAGAGGATCCAACCACATCCAGAATAAATA...GGAGGAGCAACAAGTGCTCTTAACTACAAACCATATCTCCAGCTCCATCCTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CCA 90 bp | TTGAGGATGGAGCTGGAGATATGGTTTGTAGTTAAGAGCACTTGTTGCTCCTCCTTCCCATATTTATTCTaGATGTGGTTGGATCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: LRMELEIWFVVKSTCCSSFPYLF*MWLDPL Trigger: GAGAGGATCCAACCACATCCAGAATAAATATGGGAA...GGAGGAGCAACAAGTGCTCTTAACTACAAACCATATCTCCAGCTCCATCCTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CCA 90 bp | CATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAGACCAGAGTGATCAAAGTGTCACAGGCTCACTaGGAAAAGACCATGCATAGT | + |
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Preference number: 4 (lower is better) Translates to: HGHHIGTKLFLGKTRVIKVSQAH*EKTMHS Trigger: ACTATGCATGGTCTTTTCCCAGTGAGCCTGTGACAC...TTTGATCACTCTGGTCTTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR TCA 90 bp | AGACCTAAAGTAGGAAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTATGGATCCTCTCTCCTTaGGCAGAAAGAATTTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: RPKVGRKYSHGHHIGTKLWILSP*AERICL Trigger: CAAGCAAATTCTTTCTGCTCAAGGAGAGAGGATCCA...TAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTTCCTACTTTAGGTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR TCA 90 bp | GGAAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAGCCAGACCAATTCGAATaGGATTCTGGGTTGTGTGAT | + |
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Preference number: 4 (lower is better) Translates to: GRKYSHGHHIGTKLFLGKPDQFE*DSGLCD Trigger: ATCACACAACCCAGAATCTCATTCGAATTGGTCTGG...CTTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR TCA 90 bp | GGAAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAGGATCTTTCCTCTTGCTaGGCCAGTCTTCAGTCAAAA | + |
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Preference number: 4 (lower is better) Translates to: GRKYSHGHHIGTKLFLGKDLSSC*ASLQSK Trigger: TTTTGACTGAAGACTGGCTCAGCAAGAGGAAAGATC...CTTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR GCA 90 bp | ATGGAGCTGGAGATATGGTTTGTAGTTAAGAGCACTTGTTGCTCCTCCAGACAAGAGTTATCAGGATTATaGATGCCAGACCAATTCGAA | + |
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Preference number: 4 (lower is better) Translates to: MELEIWFVVKSTCCSSRQELSGL*MPDQFE Trigger: TTCGAATTGGTCTGGCATGCATAATCCTGATAACTC...TTGTCTGGAGGAGCAACAAGTGCTCTTAACTACAAACCATATCTCCAGCTCCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CCA 90 bp | TTAGCAGAGACAGAGAGGTCTGTTAGAGGCTTCCTCTCACAGTGTCCTTTAGAAATGGGAAACTCTGCTTaGATGTTCCCATATTTATTC | + |
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Preference number: 4 (lower is better) Translates to: LAETERSVRGFLSQCPLEMGNSA*MFPYLF Trigger: GAATAAATATGGGAACATCCAAGCAGAGTTTCCCAT...TTCTAAAGGACACTGTGAGAGGAAGCCTCTAACAGACCTCTCTGTCTCTGCTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CCA 90 bp | TTCCTCTCACAGTGTCCTTTAGAATGCTTTGCCAAACTTGGTAACACTCCTACCGTAATCCTGATTCATTaGTTGAAAGGTCAAACTCCC | + |
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Preference number: 4 (lower is better) Translates to: FLSQCPLECFAKLGNTPTVILIH*LKGQTP Trigger: GGGAGTTTGACCTTTCAACCAATGAATCAGGATTAC...GGTAGGAGTGTTACCAAGTTTGGCAAAGCATTCTAAAGGACACTGTGAGAGGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR TCA 90 bp | AAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAGACTCTCCTTTTCAGTGTTaGTCCTCTGGCTCAGACATA | + |
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Preference number: 4 (lower is better) Translates to: KEIFPWPSHWNEVISRKDSPFQC*SSGSDI Trigger: TATGTCTGAGCCAGAGGATCAACACTGAAAAGGAGA...GTCTTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006792.6 |
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| CDS-3UTR GCA 90 bp | TTCCTCTCACAGTGTCCTTTAGAATGCTTTGCCAAACTTGGTAACACTCCTACCTTCTCCATCTTCTCCTaGATTCCCAATTTGTTAATC | + |
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Preference number: 4 (lower is better) Translates to: FLSQCPLECFAKLGNTPTFSIFS*IPNLLI Trigger: GATTAACAAATTGGGAATGCAGGAGAAGATGGAGAA...GGTAGGAGTGTTACCAAGTTTGGCAAAGCATTCTAAAGGACACTGTGAGAGGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CCA 90 bp | TTGAGGATGGAGCTGGAGATATGGTTTGTAGTTAAGAGCACTTGTTGCTCCTCCAATTTGTTAATCTGTTaGCCTCTTCATGATCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: LRMELEIWFVVKSTCCSSNLLIC*PLHDLS Trigger: GGAAAGATCATGAAGAGGCCAACAGATTAACAAATT...GGAGGAGCAACAAGTGCTCTTAACTACAAACCATATCTCCAGCTCCATCCTCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CCA 90 bp | CATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAGACCAGAGTGATCAAATTCCCATATTTATTCTaGATGTGGTTGGATCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: HGHHIGTKLFLGKTRVIKFPYLF*MWLDPL Trigger: GAGAGGATCCAACCACATCCAGAATAAATATGGGAA...TTTGATCACTCTGGTCTTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR TCA 90 bp | TATAAAATATTGAGGATGGAGCTGGAGATATGGTTTGTAGTTAAGAGCACTTGTGATCTTTCCTCTTGCTaGGCCAGTCTTCAGTCAAAA | + |
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Preference number: 4 (lower is better) Translates to: YKILRMELEIWFVVKSTCDLSSC*ASLQSK Trigger: TTTTGACTGAAGACTGGCTCAGCAAGAGGAAAGATC...ACAAGTGCTCTTAACTACAAACCATATCTCCAGCTCCATCCTCAATATTTTATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CCA 90 bp | AAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAGACGAAAGAATTTGCTTGTaGCAGTCTTCAGTTGGCAAA | + |
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Preference number: 4 (lower is better) Translates to: KEIFPWPSHWNEVISRKDERICL*QSSVGK Trigger: TTTGCCAACTGAAGACTGCCACAAGCAAATTCTTTC...GTCTTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CCA 90 bp | AGGAAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAGTAATCCTGATTCATTaGTTGAAAGGTCAAACTCCC | + |
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Preference number: 4 (lower is better) Translates to: RKEIFPWPSHWNEVISRKVILIH*LKGQTP Trigger: GGGAGTTTGACCTTTCAACCAATGAATCAGGATTAC...TTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTTCCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CCA 90 bp | AGGAAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAATGGGAAACTCTGCTTaGATGTTCCCATATTTATTC | + |
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Preference number: 4 (lower is better) Translates to: RKEIFPWPSHWNEVISRKMGNSA*MFPYLF Trigger: GAATAAATATGGGAACATCCAAGCAGAGTTTCCCAT...TTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTTCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CCA 90 bp | AGACCTAAAGTAGGAAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTAAATTTGTTAATCTGTTaGCCTCTTCATGATCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: RPKVGRKYSHGHHIGTKLNLLIC*PLHDLS Trigger: GGAAAGATCATGAAGAGGCCAACAGATTAACAAATT...TAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTTCCTACTTTAGGTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| 3UTR CAA 72 bp | ATGCATCCTACAGACATGCACACACAATATAAAATATaGAGGATGGAGCTGGAGATATGGTTTGTAGTTAAG | + |
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Preference number: 4 (lower is better) Translates to: MHPTDMHTQYKI*RMELEIWFVVK Trigger: CTTAACTACAAACCATATCTCCAGCTCCATCCTCAATATTTTATATTGTGTGTGCATGTCTGTAGGATGCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS CCA 90 bp | CAGATGATGGGTTTCGGGAGAGTCTCCTTTTCAGTGTTGATCCTCTaGCTCAGACATAGCCCAAGGCACAGTAGGGCAGTGAGTGTTGGC | + |
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Preference number: 5 (lower is better) Translates to: QMMGFGRVSFSVLIL*LRHSPRHSRAVSVG Trigger: GCCAACACTCACTGCCCTACTGTGCCTTGGGCTATGTCTGAGCCAGAGGATCAACACTGAAAAGGAGACTCTCCCGAAACCCATCATCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006792.6 |
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| CDS CCA 90 bp | CATTCTCCCCCAAGGTTACCTCAGGCTGTGGATAAACCCAGAGGTTaGGTGTGTCATACAGACCAGTTACTACCAGTTTCAGGGGGTTGC | + |
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Preference number: 5 (lower is better) Translates to: HSPPRLPQAVDKPRG*VCHTDQLLPVSGGC Trigger: GCAACCCCCTGAAACTGGTAGTAACTGGTCTGTATGACACACCCAACCTCTGGGTTTATCCACAGCCTGAGGTAACCTTGGGGGAGAATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS TCA 90 bp | GTCATACAGACCAGTTACTACCAGTTTCAGGGGGTTGCTCGACTTTaGCCAGAGCTCTCCACTCTGATAGAAGCAGGTGTAGATCCCTGC | + |
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Preference number: 5 (lower is better) Translates to: VIQTSYYQFQGVARL*PELSTLIEAGVDPC Trigger: GCAGGGATCTACACCTGCTTCTATCAGAGTGGAGAGCTCTGGTCAAAGTCGAGCAACCCCCTGAAACTGGTAGTAACTGGTCTGTATGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CAA 90 bp | GGCTTCCTCTCACAGTGTCCTTTAGAATGCTTTGCCAAACTTGGTAACACTCCTTTATTCTGGATGTGGTaGGATCCTCTCTCCTTGAGC | + |
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Preference number: 5 (lower is better) Translates to: GFLSQCPLECFAKLGNTPLFWMW*DPLSLS Trigger: GCTCAAGGAGAGAGGATCCAACCACATCCAGAATAA...AGGAGTGTTACCAAGTTTGGCAAAGCATTCTAAAGGACACTGTGAGAGGAAGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS TCA 90 bp | GCCATACTAGAGTTATCAGGATTATGCATGCCAGACCAATTCGAATaGGATTCTGGGTTGTGTGATCCCAGAAGGCGGAGTCCTTTTGTA | + |
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Preference number: 5 (lower is better) Translates to: AILELSGLCMPDQFE*DSGLCDPRRRSPFV Trigger: TACAAAAGGACTCCGCCTTCTGGGATCACACAACCCAGAATCTCATTCGAATTGGTCTGGCATGCATAATCCTGATAACTCTAGTATGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CAA 90 bp | GGAAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAGACCATGATGCTGGGTTaGGCCCAGATGATGGGTTTC | + |
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Preference number: 5 (lower is better) Translates to: GRKYSHGHHIGTKLFLGKTMMLG*AQMMGF Trigger: GAAACCCATCATCTGGGCCAAACCCAGCATCATGGT...CTTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006792.6 |
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| CDS-3UTR CAA 90 bp | ATGGAGCTGGAGATATGGTTTGTAGTTAAGAGCACTTGTTGCTCCTCCAGACAATTATTCTGGATGTGGTaGGATCCTCTCTCCTTGAGC | + |
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Preference number: 5 (lower is better) Translates to: MELEIWFVVKSTCCSSRQLFWMW*DPLSLS Trigger: GCTCAAGGAGAGAGGATCCAACCACATCCAGAATAA...TTGTCTGGAGGAGCAACAAGTGCTCTTAACTACAAACCATATCTCCAGCTCCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS TCA 90 bp | AGGATTATGCATGCCAGACCAATTCGAATGAGATTCTGGGTTGTGTaGTCCCAGAAGGCGGAGTCCTTTTGTAATCCTGATTCATTGGTT | + |
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Preference number: 5 (lower is better) Translates to: RIMHARPIRMRFWVV*SQKAESFCNPDSLV Trigger: AACCAATGAATCAGGATTACAAAAGGACTCCGCCTTCTGGGATCACACAACCCAGAATCTCATTCGAATTGGTCTGGCATGCATAATCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CAA 90 bp | GGCTTCCTCTCACAGTGTCCTTTAGAATGCTTTGCCAAACTTGGTAACACTCCTTCCTTCAAAGTACAGTaGATACTCAGAAGCACTCTG | + |
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Preference number: 5 (lower is better) Translates to: GFLSQCPLECFAKLGNTPSFKVQ*ILRSTL Trigger: CAGAGTGCTTCTGAGTATCAACTGTACTTTGAAGGA...AGGAGTGTTACCAAGTTTGGCAAAGCATTCTAAAGGACACTGTGAGAGGAAGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CAA 90 bp | TTGAGGATGGAGCTGGAGATATGGTTTGTAGTTAAGAGCACTTGTTGCTCCTCCTCCTTCAAAGTACAGTaGATACTCAGAAGCACTCTG | + |
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Preference number: 5 (lower is better) Translates to: LRMELEIWFVVKSTCCSSSFKVQ*ILRSTL Trigger: CAGAGTGCTTCTGAGTATCAACTGTACTTTGAAGGA...GGAGGAGCAACAAGTGCTCTTAACTACAAACCATATCTCCAGCTCCATCCTCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS TCA 90 bp | GGATGTTCCCATATTTATTCTGGATGTGGTTGGATCCTCTCTCCTTaGGCAGAAAGAATTTGCTTGTGGCAGTCTTCAGTTGGCAAAAGA | + |
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Preference number: 5 (lower is better) Translates to: GCSHIYSGCGWILSP*AERICLWQSSVGKR Trigger: TCTTTTGCCAACTGAAGACTGCCACAAGCAAATTCTTTCTGCTCAAGGAGAGAGGATCCAACCACATCCAGAATAAATATGGGAACATCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CAA 90 bp | CATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAGACCAGAGTGATCAAAGCAGAAAGAATTTGCTaGTGGCAGTCTTCAGTTGGC | + |
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Preference number: 5 (lower is better) Translates to: HGHHIGTKLFLGKTRVIKAERIC*WQSSVG Trigger: GCCAACTGAAGACTGCCACAAGCAAATTCTTTCTGC...TTTGATCACTCTGGTCTTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CAA 90 bp | CATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAGACCAGAGTGATCAAATGTGGCAGTCTTCAGTaGGCAAAAGAAGGTAACATT | + |
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Preference number: 5 (lower is better) Translates to: HGHHIGTKLFLGKTRVIKCGSLQ*AKEGNI Trigger: AATGTTACCTTCTTTTGCCAACTGAAGACTGCCACA...TTTGATCACTCTGGTCTTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CAA 90 bp | CATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAGACCAGAGTGATCAAAATCCTGATTCATTGGTaGAAAGGTCAAACTCCCAAT | + |
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Preference number: 5 (lower is better) Translates to: HGHHIGTKLFLGKTRVIKILIHW*KGQTPN Trigger: ATTGGGAGTTTGACCTTTCAACCAATGAATCAGGAT...TTTGATCACTCTGGTCTTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CAA 90 bp | AGACCTAAAGTAGGAAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTAATCCTGATTCATTGGTaGAAAGGTCAAACTCCCAAT | + |
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Preference number: 5 (lower is better) Translates to: RPKVGRKYSHGHHIGTKLILIHW*KGQTPN Trigger: ATTGGGAGTTTGACCTTTCAACCAATGAATCAGGAT...TAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTTCCTACTTTAGGTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CAA 90 bp | GGAAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAAGTGTAATCCTGATTCATaGGTTGAAAGGTCAAACTCC | + |
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Preference number: 5 (lower is better) Translates to: GRKYSHGHHIGTKLFLGKCNPDS*VERSNS Trigger: GGAGTTTGACCTTTCAACCAATGAATCAGGATTACA...CTTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTTCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS-3UTR CAA 90 bp | AGGAAGGAAATATTCCCATGGCCATCACATTGGAACGAAGTTATTTCTAGGAAATGTAATCCTGATTCATaGGTTGAAAGGTCAAACTCC | + |
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Preference number: 5 (lower is better) Translates to: RKEIFPWPSHWNEVISRKCNPDS*VERSNS Trigger: GGAGTTTGACCTTTCAACCAATGAATCAGGATTACA...TTTCCTAGAAATAACTTCGTTCCAATGTGATGGCCATGGGAATATTTCCTTCCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS CCA 72 bp | GGTTTCGGGAGAGTCTCCTTTTCAGTGTTGATCCTCTaGCTCAGACATAGCCCAAGGCACAGTAGGGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: GFGRVSFSVLIL*LRHSPRHSRAV Trigger: CACTGCCCTACTGTGCCTTGGGCTATGTCTGAGCCAGAGGATCAACACTGAAAAGGAGACTCTCCCGAAACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006792.6 |
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| CDS TCA 72 bp | ACCAGTTACTACCAGTTTCAGGGGGTTGCTCGACTTTaGCCAGAGCTCTCCACTCTGATAGAAGCAGGTGTA | + |
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Preference number: 6 (lower is better) Translates to: TSYYQFQGVARL*PELSTLIEAGV Trigger: TACACCTGCTTCTATCAGAGTGGAGAGCTCTGGTCAAAGTCGAGCAACCCCCTGAAACTGGTAGTAACTGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS GCA 72 bp | TGTCATACAGACCAGTTACTACCAGTTTCAGGGGGTTaGTCGACTTTGACCAGAGCTCTCCACTCTGATAGA | + |
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Preference number: 6 (lower is better) Translates to: CHTDQLLPVSGG*STLTRALHSDR Trigger: TCTATCAGAGTGGAGAGCTCTGGTCAAAGTCGAGCAACCCCCTGAAACTGGTAGTAACTGGTCTGTATGACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS CCA 72 bp | CCAAGGTTACCTCAGGCTGTGGATAAACCCAGAGGTTaGGTGTGTCATACAGACCAGTTACTACCAGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: PRLPQAVDKPRG*VCHTDQLLPVS Trigger: TGAAACTGGTAGTAACTGGTCTGTATGACACACCCAACCTCTGGGTTTATCCACAGCCTGAGGTAACCTTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS TCA 72 bp | CATGCCAGACCAATTCGAATGAGATTCTGGGTTGTGTaGTCCCAGAAGGCGGAGTCCTTTTGTAATCCTGAT | + |
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Preference number: 6 (lower is better) Translates to: HARPIRMRFWVV*SQKAESFCNPD Trigger: ATCAGGATTACAAAAGGACTCCGCCTTCTGGGATCACACAACCCAGAATCTCATTCGAATTGGTCTGGCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS TCA 72 bp | GAGTTATCAGGATTATGCATGCCAGACCAATTCGAATaGGATTCTGGGTTGTGTGATCCCAGAAGGCGGAGT | + |
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Preference number: 6 (lower is better) Translates to: ELSGLCMPDQFE*DSGLCDPRRRS Trigger: ACTCCGCCTTCTGGGATCACACAACCCAGAATCTCATTCGAATTGGTCTGGCATGCATAATCCTGATAACTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS CAA 72 bp | CTTGAGCAGAAAGAATTTGCTTGTGGCAGTCTTCAGTaGGCAAAAGAAGGTAACATTCTCCCCCAAGGTTAC | + |
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Preference number: 6 (lower is better) Translates to: LEQKEFACGSLQ*AKEGNILPQGY Trigger: GTAACCTTGGGGGAGAATGTTACCTTCTTTTGCCAACTGAAGACTGCCACAAGCAAATTCTTTCTGCTCAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS CAA 72 bp | ATGTGGTTGGATCCTCTCTCCTTGAGCAGAAAGAATTaGCTTGTGGCAGTCTTCAGTTGGCAAAAGAAGGTA | + |
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Preference number: 6 (lower is better) Translates to: MWLDPLSLSRKN*LVAVFSWQKKV Trigger: TACCTTCTTTTGCCAACTGAAGACTGCCACAAGCAAATTCTTTCTGCTCAAGGAGAGAGGATCCAACCACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS CAA 90 bp | TTATTCTGGATGTGGTTGGATCCTCTCTCCTTGAGCAGAAAGAATTaGCTTGTGGCAGTCTTCAGTTGGCAAAAGAAGGTAACATTCTCC | + |
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Preference number: 6 (lower is better) Translates to: LFWMWLDPLSLSRKN*LVAVFSWQKKVTFS Trigger: GGAGAATGTTACCTTCTTTTGCCAACTGAAGACTGCCACAAGCAAATTCTTTCTGCTCAAGGAGAGAGGATCCAACCACATCCAGAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS CAA 90 bp | TGGATGTTCCCATATTTATTCTGGATGTGGTTGGATCCTCTCTCCTaGAGCAGAAAGAATTTGCTTGTGGCAGTCTTCAGTTGGCAAAAG | + |
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Preference number: 6 (lower is better) Translates to: WMFPYLFWMWLDPLS*SRKNLLVAVFSWQK Trigger: CTTTTGCCAACTGAAGACTGCCACAAGCAAATTCTTTCTGCTCAAGGAGAGAGGATCCAACCACATCCAGAATAAATATGGGAACATCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS CCA 72 bp | CCCAGAAGGCGGAGTCCTTTTGTAATCCTGATTCATTaGTTGAAAGGTCAAACTCCCAATAATCAAGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: PRRRSPFVILIH*LKGQTPNNQEK Trigger: CTTCTCTTGATTATTGGGAGTTTGACCTTTCAACCAATGAATCAGGATTACAAAAGGACTCCGCCTTCTGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS CAA 72 bp | CCATATTTATTCTGGATGTGGTTGGATCCTCTCTCCTaGAGCAGAAAGAATTTGCTTGTGGCAGTCTTCAGT | + |
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Preference number: 6 (lower is better) Translates to: PYLFWMWLDPLS*SRKNLLVAVFS Trigger: ACTGAAGACTGCCACAAGCAAATTCTTTCTGCTCAAGGAGAGAGGATCCAACCACATCCAGAATAAATATGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS TCA 72 bp | CATATTTATTCTGGATGTGGTTGGATCCTCTCTCCTTaGGCAGAAAGAATTTGCTTGTGGCAGTCTTCAGTT | + |
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Preference number: 6 (lower is better) Translates to: HIYSGCGWILSP*AERICLWQSSV Trigger: AACTGAAGACTGCCACAAGCAAATTCTTTCTGCTCAAGGAGAGAGGATCCAACCACATCCAGAATAAATATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS TCA 72 bp | TTAATCTGTTGGCCTCTTCATGATCTTTCCTCTTGCTaGGCCAGTCTTCAGTCAAAAGCCATACTAGAGTTA | + |
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Preference number: 6 (lower is better) Translates to: LICWPLHDLSSC*ASLQSKAILEL Trigger: TAACTCTAGTATGGCTTTTGACTGAAGACTGGCTCAGCAAGAGGAAAGATCATGAAGAGGCCAACAGATTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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| CDS CCA 72 bp | AACTCTGCTTGGATGTTCCCATATTTATTCTGGATGTaGTTGGATCCTCTCTCCTTGAGCAGAAAGAATTTG | + |
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Preference number: 6 (lower is better) Translates to: NSAWMFPYLFWM*LDPLSLSRKNL Trigger: CAAATTCTTTCTGCTCAAGGAGAGAGGATCCAACCACATCCAGAATAAATATGGGAACATCCAAGCAGAGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006792.6 ENSMUST00000126417.3 |
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